Citrus Sinensis ID: 003148
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 844 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | yes | no | 0.983 | 0.985 | 0.616 | 0.0 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.812 | 0.929 | 0.395 | 1e-158 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.915 | 0.955 | 0.361 | 1e-157 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.896 | 0.869 | 0.370 | 1e-149 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.925 | 0.918 | 0.347 | 1e-146 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.841 | 0.862 | 0.377 | 1e-145 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.772 | 0.879 | 0.374 | 1e-143 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.931 | 0.992 | 0.320 | 1e-143 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.840 | 0.902 | 0.355 | 1e-142 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.835 | 0.829 | 0.354 | 1e-138 |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/845 (61%), Positives = 661/845 (78%), Gaps = 15/845 (1%)
Query: 5 LNPSPLVLATPTVT--TLTNQHK-AKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLG 61
L+ SP+VLAT T T +L NQ K K TP SLKNCKT++ELK H + KQGL
Sbjct: 8 LHLSPMVLATTTTTKPSLLNQSKCTKATPS------SLKNCKTIDELKMFHRSLTKQGLD 61
Query: 62 HKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVE 121
+ S I+K+V ++GT ESL++A++ F+ ++E+ T FMYNSLIRGY+ GL E
Sbjct: 62 NDVSTITKLVARSCELGTRESLSFAKEVFE----NSESYGTCFMYNSLIRGYASSGLCNE 117
Query: 122 AISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLIN 181
AI L++ + GI PDK+TFPF L+AC KS A G G+Q+HG IVKMG+ +D+FV+N L++
Sbjct: 118 AILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH 177
Query: 182 FYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMV-EEGIKPNSV 240
FY ECG++ R+VFDEMSERNVVSWTS+IC ARRD K+AV LFF MV +E + PNSV
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 241 TMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGEC 300
TMVCVISACAKL++LE G++V A+I G++ N LMV+ALVDMYMKC A+D AK+LF E
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297
Query: 301 KDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGR 360
NL LCN + SNYVR GL REAL + + M+ G RPDR++MLSA+S+ +QL ++L G+
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 361 MCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNG 420
CHGYVLRNG E WD+ICN +IDMYMKC +Q+ A RIFD MSNKTVV+WNS++AG ++NG
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 421 DVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLS-ERIKVDRVTMVGVA 479
+V++A E F MP ++ +SWNT++ GL Q ++FEEA+E+F M S E + D VTM+ +A
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVS 539
SACG+LGALDLAKWIY YIEKNGI D++L T LVDMF+RCGDP+ AM +F + RDVS
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVS 537
Query: 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599
AWTAAIGAMAM GN E+A+ELF++M+ QG+KPD + FVG LTACSHGGLV QG +F SM
Sbjct: 538 AWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSM 597
Query: 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDI 659
+HGVSP+ VHYGCMVDLLGRAGLL EA+ LI+ MP+EPNDVIW SLLAAC+ NV++
Sbjct: 598 LKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEM 657
Query: 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNG 719
AAYAAE+I L PE++G +VLLSN+YASAG+W ++A+VRL MKE+G+RK PG+SSI++ G
Sbjct: 658 AAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRG 717
Query: 720 KVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEK 779
K HEFTSGDESHPEM NI +ML E++ R G+VPDL+NVL+DVDE+EK ++LS HSEK
Sbjct: 718 KTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEK 777
Query: 780 LAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCS 839
LAMA+GLIS++K IR+VKNLR+C DCHSFAK SKVY+REII+RDNNRFH+ RQG CS
Sbjct: 778 LAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCS 837
Query: 840 CSDFW 844
C DFW
Sbjct: 838 CGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1441), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/691 (39%), Positives = 430/691 (62%), Gaps = 5/691 (0%)
Query: 159 QVHGAIVKMGFDRDVFVENCLINF--YGECGDIVDGRRVFDEMSERNVVSWTSLICACAR 216
Q HG +++ G D + + L + R+VFDE+ + N +W +LI A A
Sbjct: 48 QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYAS 107
Query: 217 RDLPKEAVYLFFEMVEEG-IKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANAL 275
P +++ F +MV E PN T +I A A++ +L LG + + + ++
Sbjct: 108 GPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVF 167
Query: 276 MVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHG 335
+ N+L+ Y CG +D+A ++F K++++V N++++ +V+ G +AL + +M
Sbjct: 168 VANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED 227
Query: 336 PRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMAC 395
+ VTM+ +SA A++ +L GR Y+ N + ++ N M+DMY KCG E A
Sbjct: 228 VKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAK 287
Query: 396 RIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEE 455
R+FD M K V+W +++ G + D E+AREV + MP +D ++WN ++ Q E
Sbjct: 288 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNE 347
Query: 456 AMELFR-VMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALV 514
A+ +F + L + +K++++T+V SAC +GAL+L +WI++YI+K+GI + + +AL+
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI 574
M+++CGD +++ +VF +EKRDV W+A IG +AM G G +AV++F +M +KP+ +
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGV 467
Query: 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKS 634
F V ACSH GLV++ LF M +G+ P+ HY C+VD+LGR+G L +A+ I++
Sbjct: 468 TFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEA 527
Query: 635 MPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694
MP+ P+ +WG+LL AC+ H N+++A A R+ EL+P G HVLLSNIYA GKW NV
Sbjct: 528 MPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENV 587
Query: 695 ARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYV 754
+ +R M+ G++K PG SSIE++G +HEF SGD +HP + L E+ +L+ GY
Sbjct: 588 SELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYE 647
Query: 755 PDLTNVLLDVDEQE-KKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKL 813
P+++ VL ++E+E K+ L+ HSEKLA+ +GLIST IRV+KNLR+C DCHS AKL
Sbjct: 648 PEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKL 707
Query: 814 VSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
+S++YDREIIVRD RFH FR G CSC+DFW
Sbjct: 708 ISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust.
Identities = 294/813 (36%), Positives = 459/813 (56%), Gaps = 40/813 (4%)
Query: 32 DSPSIGSLKNCKTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFD 91
+ P+ L+ C +L EL+Q + K GL + + +K+V + G+ + + D
Sbjct: 37 EHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID 96
Query: 92 YYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKS 151
S +Y+++++G++ + +A+ +V + + P + F ++L C
Sbjct: 97 --------SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDE 148
Query: 152 SAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLI 211
+ G ++HG +VK GF D+F L N Y +C + + R+VFD M ER++VSW +++
Sbjct: 149 AELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIV 208
Query: 212 CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMK 271
++ + + A+ + M EE +KP+ +T+V V+ A + L+ + +G + Y G
Sbjct: 209 AGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD 268
Query: 272 ANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEM 331
+ + ALVDMY KCG+++TA+QLF +RN+V N+++ YV+ +EA+ I +M
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM 328
Query: 332 LLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQ 391
L G +P V+++ A+ A A LGDL GR H + GL+ S+ N++I MY KC
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK-- 386
Query: 392 EMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQEN 451
+V++A +F ++ R +SWN M+ G Q
Sbjct: 387 -----------------------------EVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417
Query: 452 MFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT 511
+A+ F M S +K D T V V +A L AKWI+ + ++ + ++ + T
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477
Query: 512 ALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP 571
ALVDM+A+CG A +F M +R V+ W A I G G+ A+ELF EM + IKP
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKP 537
Query: 572 DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDL 631
+ + F+ V++ACSH GLV G F M + + + + HYG MVDLLGRAG L EA D
Sbjct: 538 NGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597
Query: 632 IKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691
I MPV+P ++G++L ACQ H+NV+ A AAER+ EL+P+ G HVLL+NIY +A W
Sbjct: 598 IMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMW 657
Query: 692 TNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDA 751
V +VR+ M QG+RK PG S +E+ +VH F SG +HP+ I + L ++ C +++A
Sbjct: 658 EKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEA 717
Query: 752 GYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFA 811
GYVPD TN++L V+ K+ LLS HSEKLA++FGL++T+ I V KNLR+C DCH+
Sbjct: 718 GYVPD-TNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNAT 776
Query: 812 KLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
K +S V REI+VRD RFH F+ G+CSC D+W
Sbjct: 777 KYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 301/813 (37%), Positives = 454/813 (55%), Gaps = 56/813 (6%)
Query: 38 SLKNCKTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDN 97
SLK+ K ++ + + ++ LG K +S + C L A + FD +
Sbjct: 109 SLKDGKEVDNFIRGNGFVIDSNLGSK---LSLMYTNCGD------LKEASRVFD----EV 155
Query: 98 ETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEG 157
+ LF +N L+ + G +I L+ ++ G+ D +TF V + + + G
Sbjct: 156 KIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG 214
Query: 158 VQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARR 217
Q+HG I+K GF V N L+ FY + + R+VFDEM+ER+V+SW S+I
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274
Query: 218 DLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKA----N 273
L ++ + +F +M+ GI+ + T+V V + CA + + LG V +G+KA
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV----HSIGVKACFSRE 330
Query: 274 ALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333
N L+DMY KCG +D+AK +F E DR++V ++++ Y R GLA EA+ + +EM
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390
Query: 334 HGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWD-SICNTMIDMYMKCGKQE 392
G PD T+ + ++ A+ L G+ H ++ N L G+D + N ++DMY KCG
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL-GFDIFVSNALMDMYAKCGS-- 447
Query: 393 MACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENM 452
++ A VFSEM +D ISWNT++GG ++
Sbjct: 448 -----------------------------MQEAELVFSEMRVKDIISWNTIIGGYSKNCY 478
Query: 453 FEEAMELFRVMLSE-RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT 511
EA+ LF ++L E R D T+ V AC L A D + I+ YI +NG D +A
Sbjct: 479 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538
Query: 512 ALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP 571
+LVDM+A+CG A +F + +D+ +WT I M G G++A+ LFN+M + GI+
Sbjct: 539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598
Query: 572 DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDL 631
D I FV +L ACSH GLV++GW F M + P + HY C+VD+L R G L +A
Sbjct: 599 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 658
Query: 632 IKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691
I++MP+ P+ IWG+LL C+ H +V +A AE++ EL+PE +G +VL++NIYA A KW
Sbjct: 659 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 718
Query: 692 TNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDA 751
V R+R ++ ++G+RK PG S IE+ G+V+ F +GD S+PE NI + LR++ R+ +
Sbjct: 719 EQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE 778
Query: 752 GYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFA 811
GY P L+D +E EK+ L HSEKLAMA G+IS+ IRV KNLR+C DCH A
Sbjct: 779 GYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMA 838
Query: 812 KLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
K +SK+ REI++RD+NRFH F+ G CSC FW
Sbjct: 839 KFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 301/865 (34%), Positives = 456/865 (52%), Gaps = 84/865 (9%)
Query: 26 AKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTY 85
+ + P+ +P + CKT++++K H +L G I + T + T+ S+
Sbjct: 24 STSAPEITPPF--IHKCKTISQVKLIHQKLLSFG-------ILTLNLTSHLISTYISVGC 74
Query: 86 AQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVL 145
A + + A ++ +NSLIR Y G + + L+ + PD +TFPFV
Sbjct: 75 LSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVF 134
Query: 146 NACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVV 205
AC + S+ G H + GF +VFV N L+ Y C + D R+VFDEMS +VV
Sbjct: 135 KACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVV 194
Query: 206 SWTSLICACARRDLPKEAVYLFFEMVEE-GIKPNSVTMVCVISACAKLQNLELGDRVCAY 264
SW S+I + A+ PK A+ +F M E G +P+++T+V V+ CA L LG ++ +
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 265 IDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNY--------- 315
M N + N LVDMY KCG +D A +F +++V N +++ Y
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 314
Query: 316 VRL--------------------------GLAREALAILDEMLLHGPRPDRVTMLSAVSA 349
VRL GL EAL + +ML G +P+ VT++S +S
Sbjct: 315 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG 374
Query: 350 SAQLGDLLCGRMCHGYVLR-------NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMS 402
A +G L+ G+ H Y ++ NG + + N +IDMY KC K + A +FD +S
Sbjct: 375 CASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLS 434
Query: 403 NKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRV 462
K RD ++W M+GG +Q +A+EL
Sbjct: 435 PKE-----------------------------RDVVTWTVMIGGYSQHGDANKALELLSE 465
Query: 463 MLSE--RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC-DMQLATALVDMFAR 519
M E + + + T+ AC L AL + K I+AY +N + + ++ L+DM+A+
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAK 525
Query: 520 CGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGV 579
CG A VF M ++ WT+ + M G GE+A+ +F+EM R G K D + + V
Sbjct: 526 CGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVV 585
Query: 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP 639
L ACSH G+++QG F M + GVSP HY C+VDLLGRAG L AL LI+ MP+EP
Sbjct: 586 LYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEP 645
Query: 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRL 699
V+W + L+ C+ H V++ YAAE+ITEL G + LLSN+YA+AG+W +V R+R
Sbjct: 646 PPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRS 705
Query: 700 QMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTN 759
M+ +G++K PG S +E F GD++HP I +L + R++D GYVP+
Sbjct: 706 LMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGF 765
Query: 760 VLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYD 819
L DVD++EK LL HSEKLA+A+G+++T + IR+ KNLR+C DCH+ +S++ D
Sbjct: 766 ALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIID 825
Query: 820 REIIVRDNNRFHFFRQGSCSCSDFW 844
+II+RD++RFH F+ GSCSC +W
Sbjct: 826 HDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 284/753 (37%), Positives = 430/753 (57%), Gaps = 43/753 (5%)
Query: 96 DNETSATLFMYNSLIRGYSCIGLGVEAISLY-VELAGFGILPDKFTFPFVLNACTKSSAF 154
D+ + ++ +N +I GY G E I + + + G+ PD TFP VL AC
Sbjct: 110 DHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTV 166
Query: 155 GEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICAC 214
+G ++H +K GF DV+V LI+ Y + + R +FDEM R++ SW ++I
Sbjct: 167 IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGY 226
Query: 215 ARRDLPKEAVYLFFEMVEEGIKP-NSVTMVCVISACAKLQNLELGDRVCAYIDELGMKAN 273
+ KEA+ L G++ +SVT+V ++SAC + + G + +Y + G+++
Sbjct: 227 CQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESE 281
Query: 274 ALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333
+ N L+D+Y + G + +++F R+L+ N+I+ Y A+++ EM L
Sbjct: 282 LFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRL 341
Query: 334 HGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWD-SICNTMIDMYMKCGKQE 392
+PD +T++S S +QLGD+ R G+ LR G D +I N ++ MY K G
Sbjct: 342 SRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGL-- 399
Query: 393 MACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENM 452
V+SAR VF+ +P D ISWNT++ G Q
Sbjct: 400 -----------------------------VDSARAVFNWLPNTDVISWNTIISGYAQNGF 430
Query: 453 FEEAMELFRVMLSE-RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT 511
EA+E++ +M E I ++ T V V AC GAL ++ + KNG++ D+ + T
Sbjct: 431 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVT 490
Query: 512 ALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP 571
+L DM+ +CG + A+ +F ++ + + W I G+GE+AV LF EML +G+KP
Sbjct: 491 SLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP 550
Query: 572 DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDL 631
D I FV +L+ACSH GLV++G F M +G++P + HYGCMVD+ GRAG L AL
Sbjct: 551 DHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKF 610
Query: 632 IKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691
IKSM ++P+ IWG+LL+AC+ H NVD+ A+E + E++PE G HVLLSN+YASAGKW
Sbjct: 611 IKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKW 670
Query: 692 TNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDA 751
V +R +G+RK PG SS+EV+ KV F +G+++HP + L + +L+
Sbjct: 671 EGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730
Query: 752 GYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFA 811
GYVPD VL DV++ EK+++L HSE+LA+AF LI+T IR+ KNLR+C DCHS
Sbjct: 731 GYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVT 790
Query: 812 KLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
K +SK+ +REIIVRD+NRFH F+ G CSC D+W
Sbjct: 791 KFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/723 (37%), Positives = 418/723 (57%), Gaps = 71/723 (9%)
Query: 160 VHGAIVKMGFDRDVF-----VENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICAC 214
+H ++K+G + +E C+++ + E + VF + E N++ W ++
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFE--GLPYAISVFKTIQEPNLLIWNTMFRGH 109
Query: 215 ARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANA 274
A P A+ L+ M+ G+ PNS T V+ +CAK + + G ++ ++ +LG +
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 169
Query: 275 LMVNALVDMYMKCGA-------------------------------VDTAKQLFGECKDR 303
+ +L+ MY++ G ++ A++LF E +
Sbjct: 170 YVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK 229
Query: 304 NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCH 363
++V N ++S Y G +EAL + +M+ RPD TM++ VSA AQ G + GR H
Sbjct: 230 DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 289
Query: 364 GYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVE 423
++ +G I N +ID+Y KCG ++E
Sbjct: 290 LWIDDHGFGSNLKIVNALIDLYSKCG-------------------------------ELE 318
Query: 424 SAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACG 483
+A +F +P +D ISWNT++GG T N+++EA+ LF+ ML + VTM+ + AC
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378
Query: 484 YLGALDLAKWIYAYIEK--NGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAW 541
+LGA+D+ +WI+ YI+K G+ L T+L+DM+A+CGD + A QVF + + +S+W
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601
A I AM G + + +LF+ M + GI+PD I FVG+L+ACSH G+++ G H+FR+MT
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 602 IHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAA 661
+ ++P++ HYGCM+DLLG +GL EA ++I M +EP+ VIW SLL AC+ H NV++
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Query: 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKV 721
AE + +++PE G +VLLSNIYASAG+W VA+ R + ++G++K+PG SSIE++ V
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618
Query: 722 HEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLA 781
HEF GD+ HP I ML EM L AG+VPD + VL +++E+ K+ L HHSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678
Query: 782 MAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCS 841
+AFGLIST + +VKNLR+C +CH KL+SK+Y REII RD RFH FR G CSC+
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738
Query: 842 DFW 844
D+W
Sbjct: 739 DYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/831 (32%), Positives = 451/831 (54%), Gaps = 45/831 (5%)
Query: 16 TVTTLTNQHKAKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLGHKPSYISKVVCTCA 75
TV++ T + A K++ + K +++ L Q H I+ G + S ++K+ +
Sbjct: 5 TVSSATAETTAALISKNT-YLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLS 63
Query: 76 QMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVEL-AGFGI 134
+G ++ YA+ F + + +F++N L+RG+S ++S++ L +
Sbjct: 64 DLG---AIYYARDIFLSVQRPD-----VFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDL 115
Query: 135 LPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRR 194
P+ T+ F ++A + G +HG V G D ++ + + ++ Y + + D R+
Sbjct: 116 KPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARK 175
Query: 195 VFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEG-IKPNSVTMVCVISACAKLQ 253
VFD M E++ + W ++I + ++ E++ +F +++ E + ++ T++ ++ A A+LQ
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235
Query: 254 NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMS 313
L LG ++ + + G ++ ++ + +Y KCG + LF E + ++V N ++
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIH 295
Query: 314 NYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEG 373
Y G +L++ E++L G R T++S V S G L+ HGY L++
Sbjct: 296 GYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLS 352
Query: 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMP 433
S+ + +Y K ++ESAR++F E P
Sbjct: 353 HASVSTALTTVYSKLN-------------------------------EIESARKLFDESP 381
Query: 434 GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKW 493
+ SWN M+ G TQ + E+A+ LFR M + VT+ + SAC LGAL L KW
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441
Query: 494 IYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGN 553
++ + + ++TAL+ M+A+CG A ++F M K++ W I + G
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQ 501
Query: 554 GEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG 613
G++A+ +F EML GI P + F+ VL ACSH GLV +G +F SM +G P + HY
Sbjct: 502 GQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYA 561
Query: 614 CMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673
CMVD+LGRAG L AL I++M +EP +W +LL AC+ H++ ++A +E++ ELDP+
Sbjct: 562 CMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPD 621
Query: 674 KSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPE 733
G HVLLSNI+++ + A VR K++ + K PG + IE+ H FTSGD+SHP+
Sbjct: 622 NVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQ 681
Query: 734 MNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTM 793
+ I L ++ ++R+AGY P+ L DV+E+E++ ++ HSE+LA+AFGLI+T
Sbjct: 682 VKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGT 741
Query: 794 PIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
IR++KNLR+C DCH+ KL+SK+ +R I+VRD NRFH F+ G CSC D+W
Sbjct: 742 EIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 278/783 (35%), Positives = 431/783 (55%), Gaps = 74/783 (9%)
Query: 136 PDKFTFPFVLNACT--------KSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECG 187
P + +L CT KS+ VH ++K G V++ N L+N Y + G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 188 DIVDGRRVFDEMSERNVVSWTSLICACARR-----------DLPK--------------- 221
+ R++FDEM R SW +++ A ++R LP+
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123
Query: 222 -----EAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALM 276
+A+ + +MV+EGI+P T+ V+++ A + +E G +V ++I +LG++ N +
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183
Query: 277 VNALVDMYMKCG-------------------------------AVDTAKQLFGECKDRNL 305
N+L++MY KCG +D A F + +R++
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243
Query: 306 VLCNTIMSNYVRLGLAREALAILDEMLLHGP-RPDRVTMLSAVSASAQLGDLLCGRMCHG 364
V N+++S + + G AL I +ML PDR T+ S +SA A L L G+ H
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303
Query: 365 YVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNK--TVVSWNSLIAGLIKNGDV 422
+++ G + + N +I MY +CG E A R+ + K + + +L+ G IK GD+
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363
Query: 423 ESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASAC 482
A+ +F + RD ++W M+ G Q + EA+ LFR M+ + + T+ + S
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423
Query: 483 GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KRDVSAW 541
L +L K I+ K+G + ++ AL+ M+A+ G+ A + F + +RD +W
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSW 483
Query: 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601
T+ I A+A G+ E+A+ELF ML +G++PD I +VGV +AC+H GLVNQG F M D
Sbjct: 484 TSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543
Query: 602 IHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAA 661
+ + P + HY CMVDL GRAGLL EA + I+ MP+EP+ V WGSLL+AC+ H+N+D+
Sbjct: 544 VDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGK 603
Query: 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKV 721
AAER+ L+PE SG + L+N+Y++ GKW A++R MK+ ++K G S IEV KV
Sbjct: 604 VAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663
Query: 722 HEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLA 781
H F D +HPE N I ++++ ++ GYVPD +VL D++E+ K+ +L HHSEKLA
Sbjct: 664 HVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLA 723
Query: 782 MAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCS 841
+AFGLIST +R++KNLR+C DCH+ K +SK+ REIIVRD RFH F+ G CSC
Sbjct: 724 IAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCR 783
Query: 842 DFW 844
D+W
Sbjct: 784 DYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 266/751 (35%), Positives = 423/751 (56%), Gaps = 46/751 (6%)
Query: 106 YNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIV 165
+++++ Y G ++AI ++VE G++P+ + + V+ AC+ S G G G ++
Sbjct: 134 WSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLM 193
Query: 166 KMG-FDRDVFVENCLINFY--GECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKE 222
K G F+ DV V LI+ + GE + +VFD+MSE NVV+WT +I C + P+E
Sbjct: 194 KTGHFESDVCVGCSLIDMFVKGE-NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPRE 252
Query: 223 AVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVD 282
A+ F +MV G + + T+ V SACA+L+NL LG ++ ++ G+ + +LVD
Sbjct: 253 AIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVD 310
Query: 283 MYMKC---GAVDTAKQLFGECKDRNLVLCNTIMSNYVR-LGLAREALAILDEMLLHGP-R 337
MY KC G+VD +++F +D +++ +++ Y++ LA EA+ + EM+ G
Sbjct: 311 MYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVE 370
Query: 338 PDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRI 397
P+ T SA A L D G+ G + GL S+ N++I M++K +
Sbjct: 371 PNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDR------- 423
Query: 398 FDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAM 457
+E A+ F + ++ +S+NT L G + FE+A
Sbjct: 424 ------------------------MEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAF 459
Query: 458 ELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMF 517
+L + + V T + S +G++ + I++ + K G+ C+ + AL+ M+
Sbjct: 460 KLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMY 519
Query: 518 ARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFV 577
++CG A +VF ME R+V +WT+ I A G + +E FN+M+ +G+KP+ + +V
Sbjct: 520 SKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYV 579
Query: 578 GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPV 637
+L+ACSH GLV++GW F SM + H + P++ HY CMVDLL RAGLL +A + I +MP
Sbjct: 580 AILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPF 639
Query: 638 EPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARV 697
+ + ++W + L AC+ H N ++ AA +I ELDP + ++ LSNIYA AGKW +
Sbjct: 640 QADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEM 699
Query: 698 RLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDL 757
R +MKE+ + K G S IEV K+H+F GD +HP + I L + ++ GYVPD
Sbjct: 700 RRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDT 759
Query: 758 TNVLLDVDEQEKKY----LLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKL 813
VL ++E+ + LL HSEK+A+AFGLISTSK+ P+RV KNLR+C DCH+ K
Sbjct: 760 DLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKY 819
Query: 814 VSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
+S V REI++RD NRFH F+ G CSC+D+W
Sbjct: 820 ISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 844 | ||||||
| 224107977 | 845 | predicted protein [Populus trichocarpa] | 0.998 | 0.997 | 0.710 | 0.0 | |
| 225432742 | 836 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.984 | 0.707 | 0.0 | |
| 356540339 | 836 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.997 | 0.661 | 0.0 | |
| 357480925 | 828 | Pentatricopeptide repeat-containing prot | 0.971 | 0.990 | 0.642 | 0.0 | |
| 334185551 | 842 | uncharacterized protein [Arabidopsis tha | 0.983 | 0.985 | 0.616 | 0.0 | |
| 334185549 | 938 | uncharacterized protein [Arabidopsis tha | 0.982 | 0.883 | 0.616 | 0.0 | |
| 297835272 | 904 | pentatricopeptide repeat-containing prot | 0.982 | 0.917 | 0.612 | 0.0 | |
| 297737088 | 668 | unnamed protein product [Vitis vinifera] | 0.657 | 0.830 | 0.559 | 0.0 | |
| 449491161 | 744 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.812 | 0.922 | 0.420 | 1e-173 | |
| 449436619 | 723 | PREDICTED: putative pentatricopeptide re | 0.812 | 0.948 | 0.420 | 1e-173 |
| >gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1263 bits (3267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/846 (71%), Positives = 707/846 (83%), Gaps = 3/846 (0%)
Query: 1 MALTLNPSPLVLATPTVTTLTNQHKAK--TTPKDSPSIGSLKNCKTLNELKQPHCHILKQ 58
MA TL+ S L+ ATPT L NQ++ K T + SP+ GS K CKT+ ELKQ H I K
Sbjct: 1 MAATLHLSTLIPATPTSVALPNQNELKILTKHRSSPT-GSFKKCKTMTELKQLHSQITKN 59
Query: 59 GLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGL 118
GL H P ++ ++ +C +MGTFESL YAQKA + +I+DN T +M++SLIRG+S GL
Sbjct: 60 GLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGL 119
Query: 119 GVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENC 178
G +AI ++ +L G +PD FTFPFVL+ACTKS+A EG QVHGAIVKMGF+RD+FVEN
Sbjct: 120 GYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENS 179
Query: 179 LINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPN 238
LI+FYGECG+I RRVFD+MSERNVVSWTSLI A+R KEAV LFFEMVE GI+PN
Sbjct: 180 LIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPN 239
Query: 239 SVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFG 298
SVTMV VISACAKLQ+L+LG++VC I EL ++ NALMVNALVDMYMKCGA+D A+++F
Sbjct: 240 SVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFD 299
Query: 299 ECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLC 358
EC D+NLVL NTIMSNYVR GLARE LA+L EML HGPRPDR+TMLSAVSA ++L D+ C
Sbjct: 300 ECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSC 359
Query: 359 GRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418
G+ CHGYVLRNGLEGWD++CN +I+MYMKCGKQEMACR+FD M NKT VSWNSLIAG ++
Sbjct: 360 GKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVR 419
Query: 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV 478
NGD+ESA ++FS MP D +SWNTM+G L QE+MF+EA+ELFRVM SE I D+VTMVGV
Sbjct: 420 NGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGV 479
Query: 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDV 538
ASACGYLGALDLAKWI+ YI+K IH DM L TALVDMFARCGDPQ AMQVF +M KRDV
Sbjct: 480 ASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDV 539
Query: 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRS 598
SAWTAAIGAMAMEGNG A+ELF+EML+QGIKPD +VFV +LTA SHGGLV QGWH+FRS
Sbjct: 540 SAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRS 599
Query: 599 MTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVD 658
M DI+G++PQ VHYGCMVDLLGRAGLL EAL LI SM +EPNDVIWGSLLAAC+ H+NVD
Sbjct: 600 MKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVD 659
Query: 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVN 718
IAAYAAERI+ELDPE++G+HVLLSNIYASAG+W +VA+VRL +KE+G K+PGSSSIE+N
Sbjct: 660 IAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEIN 719
Query: 719 GKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSE 778
GK+ EFT+GDESHPEM +I ML+E+ CRLRD GYVPDLTNVLLDV+E+EK+YLLS HSE
Sbjct: 720 GKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSE 779
Query: 779 KLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSC 838
KLA+AF LIST + MPIRV KNLR+C DCHSFAKLVSK Y REIIVRDNNRFHFF+QG C
Sbjct: 780 KLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFC 839
Query: 839 SCSDFW 844
SC D+W
Sbjct: 840 SCGDYW 845
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1232 bits (3187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/824 (70%), Positives = 691/824 (83%), Gaps = 1/824 (0%)
Query: 21 TNQHKAKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTF 80
T +A KDS SL+ CKTLN+LKQ HC I K GL PS ++K+V A++ +
Sbjct: 14 TQIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASP 73
Query: 81 ESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFT 140
ESL YA+KAF+ + +D + LFM NSLIRGYS GLG EAI LYV + G+ P+ +T
Sbjct: 74 ESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYT 133
Query: 141 FPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS 200
FPFVL+ CTK +AF EG+QVHG++VKMG + DVF++NCLI+FY ECG + G +VF+ MS
Sbjct: 134 FPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS 193
Query: 201 ERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDR 260
ERNVVSWTSLIC AR D PKEAV LFFEMVE GI+P+SVTMVCVISACAKL++L++G+R
Sbjct: 194 ERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGER 253
Query: 261 VCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGL 320
VCAYI ELG+K N +MVNALVDMYMKCGA+D AK+LF EC DRNLVL NTI+SNY R GL
Sbjct: 254 VCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGL 313
Query: 321 AREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNT 380
AREALAILDEML GPRPDRVTMLSA+SASAQL DL G++CHGYV+RNGLEGWDSI N
Sbjct: 314 AREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV 373
Query: 381 MIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISW 440
+IDMYMKCGK EMACR+FD MSNKTVVSWNSL AG I+NGDVESA EVF+++P R+ + W
Sbjct: 374 IIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFW 433
Query: 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEK 500
NTM+ GL Q+++FE+A+ELFR M E IK DRVTM+G+ASACGYLGA +LAKW++ YIEK
Sbjct: 434 NTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEK 493
Query: 501 NGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVEL 560
NGI CDM+L TALVDMFARCGDPQ AMQVF +M +RDVSAWTAAIG MAMEGNGE A L
Sbjct: 494 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGL 553
Query: 561 FNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLG 620
FN+ML QG+KPD ++FV VLTACSHGG V QG H+F M D HG+SPQI HYGCMVDLLG
Sbjct: 554 FNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLG 612
Query: 621 RAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680
RAGLL EA DLIKSMP+EPNDV+WGSLLAAC+ H+NV++A YAAERI EL P+++GVHVL
Sbjct: 613 RAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVL 672
Query: 681 LSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSM 740
LSNIYASAGKWT+VARVRL ++E+G+RK+PGSSS++VNG +HEFTSGDESHPEM +I+ M
Sbjct: 673 LSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALM 732
Query: 741 LREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKN 800
L+EMNCR DAG++PDL+NVLLDVDEQEK+YLLS HSEKLA+AFGLI+T ++MPIRVVKN
Sbjct: 733 LQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKN 792
Query: 801 LRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
LR+C DCHSFAK+ S +Y+REIIVRDNNRFHFFRQG CSC D+W
Sbjct: 793 LRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/846 (66%), Positives = 681/846 (80%), Gaps = 12/846 (1%)
Query: 1 MALTLNPSPLVLATPTVTTLTNQHKAKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGL 60
MA TL PS +L ++ +A ++S S L NCKTL ELKQ HC ++K+GL
Sbjct: 1 MATTLFPSSTLLVPASLK------EANPITRNSSS-KLLVNCKTLKELKQLHCDMMKKGL 53
Query: 61 -GHKP-SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGL 118
HKP S ++K++ + Q+GT ESL YA+ AF D+ A+LFMYN LIRGY+ GL
Sbjct: 54 LCHKPASNLNKLIASSVQIGTLESLDYARNAFG---DDDGNMASLFMYNCLIRGYASAGL 110
Query: 119 GVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENC 178
G +AI LYV++ GI+PDK+TFPF+L+AC+K A EGVQVHGA++KMG + D+FV N
Sbjct: 111 GDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNS 170
Query: 179 LINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPN 238
LI+FY ECG + GR++FD M ERNVVSWTSLI + RDL KEAV LFF+M E G++PN
Sbjct: 171 LIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPN 230
Query: 239 SVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFG 298
VTMVCVISACAKL++LELG +VC+YI ELGM+ + +MVNALVDMYMKCG + A+Q+F
Sbjct: 231 PVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFD 290
Query: 299 ECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLC 358
EC ++NLV+ NTIMSNYV A + L ILDEML GPRPD+VTMLS ++A AQLGDL
Sbjct: 291 ECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSV 350
Query: 359 GRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418
G+ H YVLRNGLEGWD+I N +IDMYMKCGK+E AC++F+HM NKTVV+WNSLIAGL++
Sbjct: 351 GKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVR 410
Query: 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV 478
+GD+E A +F EM RD +SWNTM+G L Q +MFEEA+ELFR M ++ I DRVTMVG+
Sbjct: 411 DGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGI 470
Query: 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDV 538
ASACGYLGALDLAKW+ YIEKN IH D+QL TALVDMF+RCGDP AM VF+RMEKRDV
Sbjct: 471 ASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDV 530
Query: 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRS 598
SAWTAAIG MAMEGN E A+ELFNEML Q +KPD +VFV +LTACSHGG V+QG LF S
Sbjct: 531 SAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWS 590
Query: 599 MTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVD 658
M HG+ P IVHYGCMVDLLGRAGLL EA+DLI+SMP+EPNDV+WGSLLAAC+KH+NV+
Sbjct: 591 MEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVE 650
Query: 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVN 718
+A YAAE++T+L PE+ G+HVLLSNIYASAGKWT+VARVRLQMKE+G++K+PGSSSIEV
Sbjct: 651 LAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQ 710
Query: 719 GKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSE 778
G +HEFTSGDESH E +I ML E+NCRL +AGYVPD TNVLLDVDEQEK++LLS HSE
Sbjct: 711 GLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSE 770
Query: 779 KLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSC 838
KLAMA+GLI+T + +PIRVVKNLR+C DCHSFAKLVSK+Y+REI VRDNNR+HFF++G C
Sbjct: 771 KLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFC 830
Query: 839 SCSDFW 844
SC D+W
Sbjct: 831 SCRDYW 836
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/833 (64%), Positives = 652/833 (78%), Gaps = 13/833 (1%)
Query: 18 TTLTNQHKAKT-----TPKDSPSIGSLKNCKTLNELKQPHCHILKQGLGHKPSYISKVVC 72
TT T H++ + T P SL+ CKTL ELKQ HC++LK+G+ + I+K++
Sbjct: 3 TTTTTLHQSSSPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFN----INKLIA 58
Query: 73 TCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELA-G 131
C QMGT ESL YA AF +D T +L+ N+LIRGY+ GL EAI +Y+ +
Sbjct: 59 ACVQMGTHESLNYALNAFK---EDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIV 115
Query: 132 FGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVD 191
GI+PD FTFPF+L+AC+K AF EGVQVHG +VKMG +D+FV N LI+FY CG +
Sbjct: 116 MGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDL 175
Query: 192 GRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAK 251
GR+VFDEM ERNVVSWTSLI + ++ KEAV LFFEMVE G++PN VTMVC ISACAK
Sbjct: 176 GRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAK 235
Query: 252 LQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTI 311
L++LELG +VC + ELG+K+N L+VNAL+DMYMKCG + +++F E D+NLV+ NTI
Sbjct: 236 LKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTI 295
Query: 312 MSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGL 371
MSNYV+ GLA E L +LDEML G RPD+VTMLS ++A AQLGDL G+ H YV RNGL
Sbjct: 296 MSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGL 355
Query: 372 EGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSE 431
E D+I N +IDMYMKCGK+E AC++FD MSNKTVV+WNSLIAGL+++G++E A +F E
Sbjct: 356 ERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGE 415
Query: 432 MPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLA 491
MP + +SWNTM+G + Q +MFEEA++L R M ++ IK DRVTMVG+ASACGYLGALDLA
Sbjct: 416 MPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLA 475
Query: 492 KWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAME 551
KWIY YIEKN IH DMQL TALVDMF+RCGDP AM+VF MEKRDVSAWTAAI A+E
Sbjct: 476 KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVE 535
Query: 552 GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVH 611
GN + A+ELF+EML+Q +K D VFV +LTA SHGG V+QG LF +M IHGVSPQIVH
Sbjct: 536 GNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVH 595
Query: 612 YGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELD 671
YGCMVDLLGRAGLL EA DL+KSMP++PNDVIWGS LAAC+KH+NV+ A YA E+IT+L
Sbjct: 596 YGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLA 655
Query: 672 PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESH 731
PEK G+HVLLSNIYASAGKW +VARVRLQMKE+G +K+ GSSSIEV+G + EFTSGDESH
Sbjct: 656 PEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESH 715
Query: 732 PEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSK 791
E I ML+E+NCR+ GYVPD TNVL+DVDEQEK++LLS HSEKLAMA+GLI+T K
Sbjct: 716 TENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGK 775
Query: 792 TMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
+PIRVVKNLR+C DCHSFAKLVSK+Y REI VRDNNR+HFF++G CSC DFW
Sbjct: 776 GIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana] gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana] gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/845 (61%), Positives = 661/845 (78%), Gaps = 15/845 (1%)
Query: 5 LNPSPLVLATPTVT--TLTNQHK-AKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLG 61
L+ SP+VLAT T T +L NQ K K TP SLKNCKT++ELK H + KQGL
Sbjct: 8 LHLSPMVLATTTTTKPSLLNQSKCTKATPS------SLKNCKTIDELKMFHRSLTKQGLD 61
Query: 62 HKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVE 121
+ S I+K+V ++GT ESL++A++ F+ ++E+ T FMYNSLIRGY+ GL E
Sbjct: 62 NDVSTITKLVARSCELGTRESLSFAKEVFE----NSESYGTCFMYNSLIRGYASSGLCNE 117
Query: 122 AISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLIN 181
AI L++ + GI PDK+TFPF L+AC KS A G G+Q+HG IVKMG+ +D+FV+N L++
Sbjct: 118 AILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH 177
Query: 182 FYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMV-EEGIKPNSV 240
FY ECG++ R+VFDEMSERNVVSWTS+IC ARRD K+AV LFF MV +E + PNSV
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 241 TMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGEC 300
TMVCVISACAKL++LE G++V A+I G++ N LMV+ALVDMYMKC A+D AK+LF E
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297
Query: 301 KDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGR 360
NL LCN + SNYVR GL REAL + + M+ G RPDR++MLSA+S+ +QL ++L G+
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 361 MCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNG 420
CHGYVLRNG E WD+ICN +IDMYMKC +Q+ A RIFD MSNKTVV+WNS++AG ++NG
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 421 DVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLS-ERIKVDRVTMVGVA 479
+V++A E F MP ++ +SWNT++ GL Q ++FEEA+E+F M S E + D VTM+ +A
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVS 539
SACG+LGALDLAKWIY YIEKNGI D++L T LVDMF+RCGDP+ AM +F + RDVS
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVS 537
Query: 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599
AWTAAIGAMAM GN E+A+ELF++M+ QG+KPD + FVG LTACSHGGLV QG +F SM
Sbjct: 538 AWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSM 597
Query: 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDI 659
+HGVSP+ VHYGCMVDLLGRAGLL EA+ LI+ MP+EPNDVIW SLLAAC+ NV++
Sbjct: 598 LKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEM 657
Query: 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNG 719
AAYAAE+I L PE++G +VLLSN+YASAG+W ++A+VRL MKE+G+RK PG+SSI++ G
Sbjct: 658 AAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRG 717
Query: 720 KVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEK 779
K HEFTSGDESHPEM NI +ML E++ R G+VPDL+NVL+DVDE+EK ++LS HSEK
Sbjct: 718 KTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEK 777
Query: 780 LAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCS 839
LAMA+GLIS++K IR+VKNLR+C DCHSFAK SKVY+REII+RDNNRFH+ RQG CS
Sbjct: 778 LAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCS 837
Query: 840 CSDFW 844
C DFW
Sbjct: 838 CGDFW 842
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana] gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/844 (61%), Positives = 660/844 (78%), Gaps = 15/844 (1%)
Query: 5 LNPSPLVLATPTVT--TLTNQHK-AKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLG 61
L+ SP+VLAT T T +L NQ K K TP SLKNCKT++ELK H + KQGL
Sbjct: 8 LHLSPMVLATTTTTKPSLLNQSKCTKATP------SSLKNCKTIDELKMFHRSLTKQGLD 61
Query: 62 HKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVE 121
+ S I+K+V ++GT ESL++A++ F+ ++E+ T FMYNSLIRGY+ GL E
Sbjct: 62 NDVSTITKLVARSCELGTRESLSFAKEVFE----NSESYGTCFMYNSLIRGYASSGLCNE 117
Query: 122 AISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLIN 181
AI L++ + GI PDK+TFPF L+AC KS A G G+Q+HG IVKMG+ +D+FV+N L++
Sbjct: 118 AILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH 177
Query: 182 FYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMV-EEGIKPNSV 240
FY ECG++ R+VFDEMSERNVVSWTS+IC ARRD K+AV LFF MV +E + PNSV
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 241 TMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGEC 300
TMVCVISACAKL++LE G++V A+I G++ N LMV+ALVDMYMKC A+D AK+LF E
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297
Query: 301 KDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGR 360
NL LCN + SNYVR GL REAL + + M+ G RPDR++MLSA+S+ +QL ++L G+
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357
Query: 361 MCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNG 420
CHGYVLRNG E WD+ICN +IDMYMKC +Q+ A RIFD MSNKTVV+WNS++AG ++NG
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 421 DVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLS-ERIKVDRVTMVGVA 479
+V++A E F MP ++ +SWNT++ GL Q ++FEEA+E+F M S E + D VTM+ +A
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVS 539
SACG+LGALDLAKWIY YIEKNGI D++L T LVDMF+RCGDP+ AM +F + RDVS
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVS 537
Query: 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599
AWTAAIGAMAM GN E+A+ELF++M+ QG+KPD + FVG LTACSHGGLV QG +F SM
Sbjct: 538 AWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSM 597
Query: 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDI 659
+HGVSP+ VHYGCMVDLLGRAGLL EA+ LI+ MP+EPNDVIW SLLAAC+ NV++
Sbjct: 598 LKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEM 657
Query: 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNG 719
AAYAAE+I L PE++G +VLLSN+YASAG+W ++A+VRL MKE+G+RK PG+SSI++ G
Sbjct: 658 AAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRG 717
Query: 720 KVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEK 779
K HEFTSGDESHPEM NI +ML E++ R G+VPDL+NVL+DVDE+EK ++LS HSEK
Sbjct: 718 KTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEK 777
Query: 780 LAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCS 839
LAMA+GLIS++K IR+VKNLR+C DCHSFAK SKVY+REII+RDNNRFH+ RQG CS
Sbjct: 778 LAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCS 837
Query: 840 CSDF 843
C DF
Sbjct: 838 CGDF 841
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/843 (61%), Positives = 653/843 (77%), Gaps = 14/843 (1%)
Query: 5 LNPSPLVLATPTVT-TLTNQHK-AKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLGH 62
L+ SP+VLA T +L NQ K K TP SLKNCKT++ELK H + KQGL
Sbjct: 8 LHFSPMVLAISTSKPSLPNQSKRTKATP------SSLKNCKTIDELKMFHLSLTKQGLDD 61
Query: 63 KPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEA 122
S I+K+V ++GT ESL++A++ F+ + E+ T FMYNSLIRGY+ GL EA
Sbjct: 62 DVSAITKLVARSCELGTRESLSFAKEVFE----NGESYGTCFMYNSLIRGYASSGLCKEA 117
Query: 123 ISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182
I L++ + GI PDK+TFPF L+ C KS G G+Q+HG I+KM + +D+FV+N L++F
Sbjct: 118 ILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHF 177
Query: 183 YGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMV-EEGIKPNSVT 241
Y ECG++ R+VFDEMSERNVVSWTS+IC ARR+ K+AV LFF MV +E + PNSVT
Sbjct: 178 YAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVT 237
Query: 242 MVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK 301
MVCVISACAKL++LE G++V +I + G++ N LM++ALVDMYMKC A+D AK+LF E
Sbjct: 238 MVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYG 297
Query: 302 DRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRM 361
NL LCN + SNYVR GL +EAL +L+ M+ G RPDR++MLSA+S+ +QL ++L G+
Sbjct: 298 ASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKS 357
Query: 362 CHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGD 421
CHGYVLRNG E WD+ICN +IDMYMKC +Q+ A RIFD MSNKTVV+WNS++AG I+NG+
Sbjct: 358 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGE 417
Query: 422 VESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSER-IKVDRVTMVGVAS 480
V++A E F+ MP ++ +SWNT++ L QENM+EEA+E+F M S+ + VD VTM+ +AS
Sbjct: 418 VDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIAS 477
Query: 481 ACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSA 540
ACG+LGALDLAKWIY YIEKN I D++L T LVDMF+RCGDP+ AM +F + RDVSA
Sbjct: 478 ACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 537
Query: 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMT 600
WTAAIGAMAM GN E+A+ELFNEM+ QG+KPD +VF+G LTAC HGGLV QG +F SM
Sbjct: 538 WTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSME 597
Query: 601 DIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIA 660
+HGVSP+ VHYGCMVDLLGRAGLL EAL LIK MP EPNDVIW SLLAAC+ NV++A
Sbjct: 598 KLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMA 657
Query: 661 AYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGK 720
A+AAE+I L PE++G +VLLSN+YASAG+W ++A+VRL MKE+G+RK PG+S I++ GK
Sbjct: 658 AFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGK 717
Query: 721 VHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKL 780
HEFTSGDESHPEM I +ML E++ R D G+VPDL+NVL+DVDEQEK ++LS HSEKL
Sbjct: 718 THEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKL 777
Query: 781 AMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSC 840
AMAFGLIS++K IR+VKNLR+C CHSFAK SKVY+REII+RDNNRFHF RQG CSC
Sbjct: 778 AMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSC 837
Query: 841 SDF 843
SDF
Sbjct: 838 SDF 840
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/595 (55%), Positives = 420/595 (70%), Gaps = 40/595 (6%)
Query: 289 AVDTAKQLFGECK-----DRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTM 343
++D A++ F K D L + N+++ Y GL REA+ + ML+ G P+ T
Sbjct: 75 SLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTF 134
Query: 344 LSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN 403
+S ++ G HG V++ GLE I N +I Y +CG + ++F+ MS
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194
Query: 404 KTVVSWNSLIAGL-----------------------------IKNGDVESAREVFSEMPG 434
+ VVSW SLI G +K G +++A+ +F E
Sbjct: 195 RNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVD 254
Query: 435 RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAK-- 492
R+ + +NT+L ++ + EA+ + ML + + DRVTM+ SA L L K
Sbjct: 255 RNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVC 314
Query: 493 ---WIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMA 549
W++ YIEKNGI CDM+L TALVDMFARCGDPQ AMQVF +M +RDVSAWTAAIG MA
Sbjct: 315 HGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMA 374
Query: 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI 609
MEGNGE A LFN+ML QG+KPD ++FV VLTACSHGG V QG H+F M D HG+SPQI
Sbjct: 375 MEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQI 433
Query: 610 VHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE 669
HYGCMVDLLGRAGLL EA DLIKSMP+EPNDV+WGSLLAAC+ H+NV++A YAAERI E
Sbjct: 434 EHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINE 493
Query: 670 LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDE 729
L P+++GVHVLLSNIYASAGKWT+VARVRL ++E+G+RK+PGSSS++VNG +HEFTSGDE
Sbjct: 494 LAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDE 553
Query: 730 SHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLIST 789
SHPEM +I+ ML+EMNCR DAG++PDL+NVLLDVDEQEK+YLLS HSEKLA+AFGLI+T
Sbjct: 554 SHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIAT 613
Query: 790 SKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
++MPIRVVKNLR+C DCHSFAK+ S +Y+REIIVRDNNRFHFFRQG CSC D+W
Sbjct: 614 GRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 289/688 (42%), Positives = 442/688 (64%), Gaps = 2/688 (0%)
Query: 159 QVHGAIVKMGFDRDVFVENCLINF--YGECGDIVDGRRVFDEMSERNVVSWTSLICACAR 216
QVH +K G + + ++N ++ F E GD RR+FDE+ E N+ W ++I +R
Sbjct: 57 QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSR 116
Query: 217 RDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALM 276
D P+ V L+ EM+ G+KP+ T + + LE G ++ ++ + G++ N +
Sbjct: 117 LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFV 176
Query: 277 VNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGP 336
ALV MY+ CG +DTA+ +F C +++ N I+S Y ++G E+ + M
Sbjct: 177 HTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQV 236
Query: 337 RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACR 396
P VT++ +SA ++L DL G+ H YV +E + N MIDMY CG+ + A
Sbjct: 237 LPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALG 296
Query: 397 IFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEA 456
IF M+N+ ++SW ++++G G+++ AR F +MP +D++SW M+ G + N F+EA
Sbjct: 297 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 356
Query: 457 MELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDM 516
+ELFR M + +K D TMV V +AC +LGAL+L +WI YI++N I D+ + AL+DM
Sbjct: 357 LELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDM 416
Query: 517 FARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF 576
+ +CGD +A +FR M +RD WTA I +A+ G+GE+A+++F+ ML+ I PD I +
Sbjct: 417 YFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITY 476
Query: 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP 636
+GVL+AC+H GLV++G F MT HG+ P I HYGC+VDLL RAG L EA ++I++MP
Sbjct: 477 IGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMP 536
Query: 637 VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696
++ N ++WG+LLA C+ ++ D+A ++I EL+P+ V+VLL NIYA+ +W ++
Sbjct: 537 IKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRE 596
Query: 697 VRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPD 756
+R M ++GI+K PG S IE+NG+VHEF +GD SHP+ NI + L +M L+ AGY PD
Sbjct: 597 LRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPD 656
Query: 757 LTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSK 816
++ V LD+ E++K+ + HSEKLA+AFGLI++ + IR+ KNLR+C DCH+ AKLVSK
Sbjct: 657 ISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSK 716
Query: 817 VYDREIIVRDNNRFHFFRQGSCSCSDFW 844
VY+RE+IVRD RFH F+ G CSC D+W
Sbjct: 717 VYNREVIVRDRTRFHHFKHGLCSCKDYW 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 289/688 (42%), Positives = 442/688 (64%), Gaps = 2/688 (0%)
Query: 159 QVHGAIVKMGFDRDVFVENCLINF--YGECGDIVDGRRVFDEMSERNVVSWTSLICACAR 216
QVH +K G + + ++N ++ F E GD RR+FDE+ E N+ W ++I +R
Sbjct: 36 QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSR 95
Query: 217 RDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALM 276
D P+ V L+ EM+ G+KP+ T + + LE G ++ ++ + G++ N +
Sbjct: 96 LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFV 155
Query: 277 VNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGP 336
ALV MY+ CG +DTA+ +F C +++ N I+S Y ++G E+ + M
Sbjct: 156 HTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQV 215
Query: 337 RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACR 396
P VT++ +SA ++L DL G+ H YV +E + N MIDMY CG+ + A
Sbjct: 216 LPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALG 275
Query: 397 IFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEA 456
IF M+N+ ++SW ++++G G+++ AR F +MP +D++SW M+ G + N F+EA
Sbjct: 276 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 335
Query: 457 MELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDM 516
+ELFR M + +K D TMV V +AC +LGAL+L +WI YI++N I D+ + AL+DM
Sbjct: 336 LELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDM 395
Query: 517 FARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF 576
+ +CGD +A +FR M +RD WTA I +A+ G+GE+A+++F+ ML+ I PD I +
Sbjct: 396 YFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITY 455
Query: 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP 636
+GVL+AC+H GLV++G F MT HG+ P I HYGC+VDLL RAG L EA ++I++MP
Sbjct: 456 IGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMP 515
Query: 637 VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696
++ N ++WG+LLA C+ ++ D+A ++I EL+P+ V+VLL NIYA+ +W ++
Sbjct: 516 IKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRE 575
Query: 697 VRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPD 756
+R M ++GI+K PG S IE+NG+VHEF +GD SHP+ NI + L +M L+ AGY PD
Sbjct: 576 LRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPD 635
Query: 757 LTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSK 816
++ V LD+ E++K+ + HSEKLA+AFGLI++ + IR+ KNLR+C DCH+ AKLVSK
Sbjct: 636 ISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSK 695
Query: 817 VYDREIIVRDNNRFHFFRQGSCSCSDFW 844
VY+RE+IVRD RFH F+ G CSC D+W
Sbjct: 696 VYNREVIVRDRTRFHHFKHGLCSCKDYW 723
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 844 | ||||||
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.812 | 0.929 | 0.384 | 1.5e-140 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.694 | 0.771 | 0.347 | 2.1e-128 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.804 | 0.916 | 0.364 | 9.9e-126 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.745 | 0.871 | 0.370 | 1.2e-120 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.650 | 0.882 | 0.394 | 7.7e-116 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.657 | 0.906 | 0.391 | 5e-115 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.864 | 0.928 | 0.335 | 1e-114 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.617 | 0.806 | 0.414 | 2.2e-114 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.778 | 0.841 | 0.355 | 5.8e-114 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.575 | 0.848 | 0.442 | 7.3e-114 |
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1375 (489.1 bits), Expect = 1.5e-140, P = 1.5e-140
Identities = 266/691 (38%), Positives = 419/691 (60%)
Query: 159 QVHGAIVKMGFDRDVFVENCLINF--YGECGDIVDGRRVFDEMSERNVVSWTSLICACAR 216
Q HG +++ G D + + L + R+VFDE+ + N +W +LI A A
Sbjct: 48 QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYAS 107
Query: 217 RDLPKEAVYLFFEMVEEG-IKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANAL 275
P +++ F +MV E PN T +I A A++ +L LG + + + ++
Sbjct: 108 GPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVF 167
Query: 276 MVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHG 335
+ N+L+ Y CG +D+A ++F K++++V N++++ +V+ G +AL + +M
Sbjct: 168 VANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED 227
Query: 336 PRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMAC 395
+ VTM+ +SA A++ +L GR Y+ N + ++ N M+DMY KCG E A
Sbjct: 228 VKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAK 287
Query: 396 RIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEE 455
R+FD M K V+W +++ G + D E+AREV + MP +D ++WN ++ Q E
Sbjct: 288 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNE 347
Query: 456 AMELFR-VMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALV 514
A+ +F + L + +K++++T+V SAC +GAL+L +WI++YI+K+GI + + +AL+
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI 574
M+++CGD +++ +VF +EKRDV W+A IG +AM G G +AV++F +M +KP+ +
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGV 467
Query: 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXXXXXIKS 634
F V ACSH GLV++ LF M +G+ P+ HY C+V I++
Sbjct: 468 TFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEA 527
Query: 635 MPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694
MP+ P+ +WG+LL AC+ H N+++A A R+ EL+P G HVLLSNIYA GKW NV
Sbjct: 528 MPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENV 587
Query: 695 ARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYV 754
+ +R M+ G++K PG SSIE++G +HEF SGD +HP + L E+ +L+ GY
Sbjct: 588 SELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYE 647
Query: 755 PDLTNVLLDVDEQE-KKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKL 813
P+++ VL ++E+E K+ L+ HSEKLA+ +GLIST IRV+KNLR+C DCHS AKL
Sbjct: 648 PEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKL 707
Query: 814 VSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
+S++YDREIIVRD RFH FR G CSC+DFW
Sbjct: 708 ISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 2.1e-128, Sum P(2) = 2.1e-128
Identities = 207/596 (34%), Positives = 340/596 (57%)
Query: 257 LGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK----DRNLVLCNTIM 312
+GD + D + K + + +AL+ Y + G ++ ++ E + + N+V N I+
Sbjct: 167 MGDARKVF-DRMSDK-DVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGIL 224
Query: 313 SNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLE 372
S + R G +EA+ + ++ G PD+VT+ S + + L GR+ HGYV++ GL
Sbjct: 225 SGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLL 284
Query: 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEM 432
+ + MIDMY K G +F+ N+ I GL +NG V+ A E+F
Sbjct: 285 KDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELF 344
Query: 433 PGR----DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGAL 488
+ + +SW +++ G Q EA+ELFR M +K + VT+ + ACG + AL
Sbjct: 345 KEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAAL 404
Query: 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAM 548
+ + + + + ++ + +AL+DM+A+CG + VF M +++ W + +
Sbjct: 405 GHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGF 464
Query: 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ 608
+M G ++ + +F ++R +KPD I F +L+AC GL ++GW F+ M++ +G+ P+
Sbjct: 465 SMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPR 524
Query: 609 IVHYGCMVXXXXXXXXXXXXXXXIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERIT 668
+ HY CMV IK MP EP+ +WG+LL +C+ NVD+A AAE++
Sbjct: 525 LEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLF 584
Query: 669 ELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGD 728
L+PE G +VLLSNIYA+ G WT V +R +M+ G++K PG S I+V +V+ +GD
Sbjct: 585 HLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGD 644
Query: 729 ESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLIS 788
+SHP+++ I+ + E++ +R +G+ P+L L DV+EQE++ +L HSEKLA+ FGL++
Sbjct: 645 KSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLN 704
Query: 789 TSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
T P++V+KNLR+C DCH+ K +S REI +RD NRFH F+ G CSC DFW
Sbjct: 705 TPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 254/696 (36%), Positives = 406/696 (58%)
Query: 160 VHGAIVKMGFDRDVF-----VENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICAC 214
+H ++K+G + +E C+++ + E G + VF + E N++ W ++
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFCILSPHFE-G-LPYAISVFKTIQEPNLLIWNTMFRGH 109
Query: 215 ARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANA 274
A P A+ L+ M+ G+ PNS T V+ +CAK + + G ++ ++ +LG +
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 169
Query: 275 LMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLH 334
+ +L+ MY++ G ++ A ++F + R++V ++ Y G A + DE+
Sbjct: 170 YVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEI--- 226
Query: 335 GPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMA 394
P D V+ + +S A+ G+ +++ + +S T++ + G E+
Sbjct: 227 -PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 395 CRIF----DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQE 450
++ DH + N+LI K G++E+A +F +P +D ISWNT++GG T
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKN--GIHCDMQ 508
N+++EA+ LF+ ML + VTM+ + AC +LGA+D+ +WI+ YI+K G+
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 405
Query: 509 LATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQG 568
L T+L+DM+A+CGD + A QVF + + +S+W A I AM G + + +LF+ M + G
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG 465
Query: 569 IKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXX 628
I+PD I FVG+L+ACSH G+++ G H+FR+MT + ++P++ HYGCM+
Sbjct: 466 IQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 525
Query: 629 XXXIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688
I M +EP+ VIW SLL AC+ H NV++ AE + +++PE G +VLLSNIYASA
Sbjct: 526 EEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASA 585
Query: 689 GKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRL 748
G+W VA+ R + ++G++K+PG SSIE++ VHEF GD+ HP I ML EM L
Sbjct: 586 GRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLL 645
Query: 749 RDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCH 808
AG+VPD + VL +++E+ K+ L HHSEKLA+AFGLIST + +VKNLR+C +CH
Sbjct: 646 EKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 705
Query: 809 SFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
KL+SK+Y REII RD RFH FR G CSC+D+W
Sbjct: 706 EATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 236/637 (37%), Positives = 372/637 (58%)
Query: 215 ARRDLPKEAVYLFFEMVEE-GIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKAN 273
+R P+ A LF++ + G + + + + ++ A +K+ L G + ++ +
Sbjct: 87 SRSSEPR-ATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCD 145
Query: 274 ALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333
+ +DMY CG ++ A+ +F E R++V NT++ Y R GL EA + +EM
Sbjct: 146 PFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKD 205
Query: 334 HGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEM 393
PD + + + VSA + G++ R + +++ N + + ++ MY G +M
Sbjct: 206 SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDM 265
Query: 394 ACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMF 453
A F MS + + ++++G K G ++ A+ +F + +D + W TM+ + +
Sbjct: 266 AREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYP 325
Query: 454 EEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATAL 513
+EA+ +F M IK D V+M V SAC LG LD AKW+++ I NG+ ++ + AL
Sbjct: 326 QEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNAL 385
Query: 514 VDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS 573
++M+A+CG VF +M +R+V +W++ I A++M G A+ LF M ++ ++P+
Sbjct: 386 INMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNE 445
Query: 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXXXXXIK 633
+ FVGVL CSH GLV +G +F SMTD + ++P++ HYGCMV I+
Sbjct: 446 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIE 505
Query: 634 SMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693
SMPV N VIWGSL++AC+ H +++ +AA+RI EL+P+ G VL+SNIYA +W +
Sbjct: 506 SMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWED 565
Query: 694 VARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGY 753
V +R M+E+ + K G S I+ NGK HEF GD+ H + N I + L E+ +L+ AGY
Sbjct: 566 VRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGY 625
Query: 754 VPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMP------IRVVKNLRLCCDC 807
VPD +VL+DV+E+EKK L+ HSEKLA+ FGL++ K IR+VKNLR+C DC
Sbjct: 626 VPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDC 685
Query: 808 HSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
H F KLVSKVY+REIIVRD RFH ++ G CSC D+W
Sbjct: 686 HLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 7.7e-116, Sum P(2) = 7.7e-116
Identities = 217/550 (39%), Positives = 332/550 (60%)
Query: 296 LFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGD 355
+F + ++ NL + N ++ + +A +ML PD +T + AS+++
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 356 LLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAG 415
+L G H ++R G + + N+++ MY CG A RIF M + VVSW S++AG
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192
Query: 416 LIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTM 475
K G VE+ARE+F EMP R+ +W+ M+ G + N FE+A++LF M E + + M
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252
Query: 476 VGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK 535
V V S+C +LGAL+ + Y Y+ K+ + ++ L TALVDMF RCGD ++A+ VF + +
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312
Query: 536 RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHL 595
D +W++ I +A+ G+ +A+ F++M+ G P + F VL+ACSHGGLV +G +
Sbjct: 313 TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372
Query: 596 FRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXXXXXIKSMPVEPNDVIWGSLLAACQKHQ 655
+ +M HG+ P++ HYGC+V I M V+PN I G+LL AC+ ++
Sbjct: 373 YENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYK 432
Query: 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSI 715
N ++A + ++ PE SG +VLLSNIYA AG+W + +R MKE+ ++K PG S I
Sbjct: 433 NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492
Query: 716 EVNGKVHEFTSGDES-HPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLS 774
E++GK+++FT GD+ HPEM I E+ ++R GY + + DVDE+EK+ +
Sbjct: 493 EIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIH 552
Query: 775 HHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFR 834
HSEKLA+A+G++ T IR+VKNLR+C DCH+ KL+S+VY RE+IVRD NRFH FR
Sbjct: 553 MHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFR 612
Query: 835 QGSCSCSDFW 844
G CSC D+W
Sbjct: 613 NGVCSCRDYW 622
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 218/557 (39%), Positives = 340/557 (61%)
Query: 290 VDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGP--RPDRVTMLSAV 347
+D A Q+ + L N+++ + + + ++ +L G +PD T+ V
Sbjct: 56 LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115
Query: 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVV 407
A L G HG +R G + + +I +Y + G + ++F+ + V
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175
Query: 408 SWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSER 467
+++ + GDV AR++F MP RD I+WN M+ G Q EA+ +F +M E
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235
Query: 468 IKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527
+KV+ V M+ V SAC LGALD +W ++YIE+N I ++LAT LVD++A+CGD ++AM
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAM 295
Query: 528 QVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG 587
+VF ME+++V W++A+ +AM G GE+ +ELF+ M + G+ P+++ FV VL CS G
Sbjct: 296 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355
Query: 588 LVNQGWHLFRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXXXXXIKSMPVEPNDVIWGSL 647
V++G F SM + G+ PQ+ HYGC+V I+ MP++P+ +W SL
Sbjct: 356 FVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSL 415
Query: 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIR 707
L A + ++N+++ A++++ EL+ G +VLLSNIYA + W NV+ VR MK +G+R
Sbjct: 416 LHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVR 475
Query: 708 KLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQ 767
K PG S +EVNG+VHEF GD+SHP+ I ++ ++++ RLR AGY D T V+ D+DE+
Sbjct: 476 KQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEE 535
Query: 768 EKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDN 827
EK+ L HSEK A+AFG++S + +PIR+VKNLR+C DCH + ++SK+++REIIVRD
Sbjct: 536 EKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDR 595
Query: 828 NRFHFFRQGSCSCSDFW 844
NRFH F+ G CSC+ FW
Sbjct: 596 NRFHHFKDGHCSCNGFW 612
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 252/752 (33%), Positives = 409/752 (54%)
Query: 102 TLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVH 161
++++ N+L+ YS G + A L+ E+ L F++ VL+A +K +
Sbjct: 48 SVYLMNNLMNVYSKTGYALHARKLFDEMP----LRTAFSWNTVLSAYSKRGDMDSTCEFF 103
Query: 162 GAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNV----VSWTSLICACARR 217
+ + RD +I Y G RV +M + + + T+++ + A
Sbjct: 104 DQLPQ----RDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAAT 159
Query: 218 DLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCA-YIDELGMKANALM 276
+ + +V+ G++ N +++ AK GD + A ++ + + +
Sbjct: 160 RCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC-----GDPMMAKFVFDRMVVRDISS 214
Query: 277 VNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGP 336
NA++ ++M+ G +D A F + +R++V N+++S + + G AL I +ML
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Query: 337 -RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMAC 395
PDR T+ S +SA A L L G+ H +++ G + + N +I MY +CG E A
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETAR 334
Query: 396 RIFDHMSNKT--VVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMF 453
R+ + K + + +L+ G IK GD+ A+ +F + RD ++W M+ G Q +
Sbjct: 335 RLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSY 394
Query: 454 EEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATAL 513
EA+ LFR M+ + + T+ + S L +L K I+ K+G + ++ AL
Sbjct: 395 GEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNAL 454
Query: 514 VDMFARCGDPQRAMQVFRRME-KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD 572
+ M+A+ G+ A + F + +RD +WT+ I A+A G+ E+A+ELF ML +G++PD
Sbjct: 455 ITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD 514
Query: 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXXXXXI 632
I +VGV +AC+H GLVNQG F M D+ + P + HY CMV I
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFI 574
Query: 633 KSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692
+ MP+EP+ V WGSLL+AC+ H+N+D+ AAER+ L+PE SG + L+N+Y++ GKW
Sbjct: 575 EKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWE 634
Query: 693 NVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAG 752
A++R MK+ ++K G S IEV KVH F D +HPE N I ++++ ++ G
Sbjct: 635 EAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMG 694
Query: 753 YVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAK 812
YVPD +VL D++E+ K+ +L HHSEKLA+AFGLIST +R++KNLR+C DCH+ K
Sbjct: 695 YVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIK 754
Query: 813 LVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
+SK+ REIIVRD RFH F+ G CSC D+W
Sbjct: 755 FISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 222/536 (41%), Positives = 336/536 (62%)
Query: 324 ALAILDEMLLHG-PRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMI 382
A+ + EM+ P+R T S + A A+ G + G+ HG L+ G G + + + ++
Sbjct: 111 AITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLV 170
Query: 383 DMYMKCGKQEMACRIF-------DH--MSNKT-----VVSWNSLIAGLIKNGDVESAREV 428
MY+ CG + A +F D M+++ +V WN +I G ++ GD ++AR +
Sbjct: 171 RMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARML 230
Query: 429 FSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGAL 488
F +M R +SWNTM+ G + F++A+E+FR M I+ + VT+V V A LG+L
Sbjct: 231 FDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSL 290
Query: 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAM 548
+L +W++ Y E +GI D L +AL+DM+++CG ++A+ VF R+ + +V W+A I
Sbjct: 291 ELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGF 350
Query: 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ 608
A+ G A++ F +M + G++P + ++ +LTACSHGGLV +G F M + G+ P+
Sbjct: 351 AIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPR 410
Query: 609 IVHYGCMVXXXXXXXXXXXXXXXIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERIT 668
I HYGCMV I +MP++P+DVIW +LL AC+ NV++ A +
Sbjct: 411 IEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILM 470
Query: 669 ELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGD 728
++ P SG +V LSN+YAS G W+ V+ +RL+MKE+ IRK PG S I+++G +HEF D
Sbjct: 471 DMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVED 530
Query: 729 ESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLIS 788
+SHP+ I+SML E++ +LR AGY P T VLL+++E++K+ +L +HSEK+A AFGLIS
Sbjct: 531 DSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLIS 590
Query: 789 TSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
TS PIR+VKNLR+C DCHS KL+SKVY R+I VRD RFH F+ GSCSC D+W
Sbjct: 591 TSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 241/677 (35%), Positives = 382/677 (56%)
Query: 170 DRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFE 229
+RD+ N +I Y ++ R +F+ M ER+V SW +++ A+ +A +F
Sbjct: 123 ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDR 182
Query: 230 MVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMV--NALVDMYMKC 287
M E+ N V+ ++SA +QN ++ + C + N +V N L+ ++K
Sbjct: 183 MPEK----NDVSWNALLSAY--VQNSKM-EEACMLFKS---RENWALVSWNCLLGGFVKK 232
Query: 288 GAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAV 347
+ A+Q F R++V NTI++ Y + G EA + DE P D T + V
Sbjct: 233 KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMV 288
Query: 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVV 407
S Q + R + W N M+ Y++ + EMA +FD M + V
Sbjct: 289 SGYIQNRMVEEARELFDKMPERNEVSW----NAMLAGYVQGERMEMAKELFDVMPCRNVS 344
Query: 408 SWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSER 467
+WN++I G + G + A+ +F +MP RD +SW M+ G +Q EA+ LF M E
Sbjct: 345 TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREG 404
Query: 468 IKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527
+++R + S C + AL+L K ++ + K G + AL+ M+ +CG + A
Sbjct: 405 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 528 QVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG 587
+F+ M +D+ +W I + G GE A+ F M R+G+KPD V VL+ACSH G
Sbjct: 465 DLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 524
Query: 588 LVNQGWHLFRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXXXXXIKSMPVEPNDVIWGSL 647
LV++G F +MT +GV P HY CMV +K+MP EP+ IWG+L
Sbjct: 525 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTL 584
Query: 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIR 707
L A + H N ++A AA++I ++PE SG++VLLSN+YAS+G+W +V ++R++M+++G++
Sbjct: 585 LGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 644
Query: 708 KLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQ 767
K+PG S IE+ K H F+ GDE HPE + I + L E++ R++ AGYV + VL DV+E+
Sbjct: 645 KVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE 704
Query: 768 EKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDN 827
EK+ ++ +HSE+LA+A+G++ S PIRV+KNLR+C DCH+ K ++++ R II+RDN
Sbjct: 705 EKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDN 764
Query: 828 NRFHFFRQGSCSCSDFW 844
NRFH F+ GSCSC D+W
Sbjct: 765 NRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 218/493 (44%), Positives = 315/493 (63%)
Query: 359 GRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418
G+ H +L GL+ + ++++MY CG A R+FD +K + +WNS++ K
Sbjct: 81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAK 140
Query: 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSER-----IKVDRV 473
G ++ AR++F EMP R+ ISW+ ++ G ++EA++LFR M + ++ +
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200
Query: 474 TMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRM 533
TM V SACG LGAL+ KW++AYI+K + D+ L TAL+DM+A+CG +RA +VF +
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 534 -EKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ-GIKPDSIVFVGVLTACSHGGLVNQ 591
K+DV A++A I +AM G ++ +LF+EM I P+S+ FVG+L AC H GL+N+
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINE 320
Query: 592 GWHLFRSMTDIHGVSPQIVHYGCMVXXXXXXXXXXXXXXXIKSMPVEPNDVIWGSLLAAC 651
G F+ M + G++P I HYGCMV I SMP+EP+ +IWGSLL+
Sbjct: 321 GKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGS 380
Query: 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPG 711
+ ++ A +R+ ELDP SG +VLLSN+YA G+W V +R +M+ +GI K+PG
Sbjct: 381 RMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPG 440
Query: 712 SSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKY 771
S +EV G VHEF GDES E I +ML E+ RLR+AGYV D VLLD++E++K+
Sbjct: 441 CSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEI 500
Query: 772 LLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFH 831
LS+HSEKLA+AF L+ T P+R++KNLR+C DCH K++SK++ REI+VRD NRFH
Sbjct: 501 ALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFH 560
Query: 832 FFRQGSCSCSDFW 844
FR GSCSC DFW
Sbjct: 561 HFRDGSCSCRDFW 573
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LUJ2 | PP249_ARATH | No assigned EC number | 0.6165 | 0.9834 | 0.9857 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 844 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-152 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-67 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-56 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-50 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-28 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 5e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 575 bits (1484), Expect = 0.0
Identities = 284/740 (38%), Positives = 407/740 (55%), Gaps = 34/740 (4%)
Query: 103 LFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHG 162
LF +N L+ GY+ G EA+ LY + G+ PD +TFP VL C G +VH
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 163 AIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKE 222
+V+ GF+ DV V N LI Y +CGD+V R VFD M R+ +SW ++I E
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271
Query: 223 AVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVD 282
+ LFF M E + P+ +T+ VISAC L + LG + Y+ + G + + N+L+
Sbjct: 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331
Query: 283 MYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVT 342
MY+ G+ A+++F + ++ V ++S Y + GL +AL M PD +T
Sbjct: 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
Query: 343 MLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMS 402
+ S +SA A LGDL G H R GL + + N +I+MY KC + A +F ++
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
Query: 403 NKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRV 462
K V+SW S+IAGL N N EA+ FR
Sbjct: 452 EKDVISWTSIIAGLRLN-------------------------------NRCFEALIFFRQ 480
Query: 463 MLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGD 522
ML +K + VT++ SAC +GAL K I+A++ + GI D L AL+D++ RCG
Sbjct: 481 MLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 523 PQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA 582
A F EK DV +W + G G AVELFN M+ G+ PD + F+ +L A
Sbjct: 540 MNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDV 642
CS G+V QG F SM + + ++P + HY C+VDLLGRAG L EA + I MP+ P+
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658
Query: 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702
+WG+LL AC+ H++V++ AA+ I ELDP G ++LL N+YA AGKW VARVR M+
Sbjct: 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
Query: 703 EQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLL 762
E G+ PG S +EV GKVH F + DESHP++ I+++L +++ +G ++ +
Sbjct: 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSS-M 777
Query: 763 DVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREI 822
D E K + HSE+LA+AFGLI+T MPI V KNL +C +CH+ K +SK+ REI
Sbjct: 778 DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837
Query: 823 IVRDNNRFHFFRQGSCSCSD 842
VRD +FH F+ G CSC D
Sbjct: 838 SVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 463 bits (1192), Expect = e-152
Identities = 226/634 (35%), Positives = 352/634 (55%), Gaps = 37/634 (5%)
Query: 213 ACARRDLPKEAVYLFFEMVEEG--IKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGM 270
AC R EA+ LF E++E G + T ++ AC L+++ V +++ G
Sbjct: 99 ACGRHR---EALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154
Query: 271 KANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDE 330
+ + M+N ++ M++KCG + A++LF E +RNL TI+ V G REA A+ E
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 331 MLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGK 390
M G + T + + ASA LG G+ H VL+ G+ G + +IDMY KCG
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 391 QEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQE 450
E A +FD M KT V+WNS++AG +G +SE
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHG--------YSE------------------- 307
Query: 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLA 510
EA+ L+ M + +D+ T + L L+ AK +A + + G D+
Sbjct: 308 ----EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 511 TALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIK 570
TALVD++++ G + A VF RM ++++ +W A I G G +AVE+F M+ +G+
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 571 PDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALD 630
P+ + F+ VL+AC + GL QGW +F+SM++ H + P+ +HY CM++LLGR GLL EA
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 631 LIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690
+I+ P +P +W +LL AC+ H+N+++ AAE++ + PEK +V+L N+Y S+G+
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543
Query: 691 WTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRD 750
A+V +K +G+ P + IEV + H F SGD HP+ I L E+ + +
Sbjct: 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603
Query: 751 AGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSF 810
GYV + +L DVDE E+K +HSEKLA+AFGLI+TS+ P+++ ++ R+C DCH
Sbjct: 604 YGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKV 663
Query: 811 AKLVSKVYDREIIVRDNNRFHFFRQGSCSCSDFW 844
K ++ V REI+VRD +RFH F+ G CSC D+W
Sbjct: 664 IKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 6e-67
Identities = 155/591 (26%), Positives = 272/591 (46%), Gaps = 64/591 (10%)
Query: 99 TSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGV 158
+S++ NS +R G +A+ L + + D+ + + C A EG
Sbjct: 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGS 106
Query: 159 QVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRD 218
+V + V + N +++ + G++V VF +M ER++ SW L+ A+
Sbjct: 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166
Query: 219 LPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVN 278
EA+ L+ M+ G++P+ T CV+ C + +L G V A++ G + + +VN
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226
Query: 279 ALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRP 338
AL+ MY+KCG V +A+ +F R+ + N ++S Y G E L + M P
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
Query: 339 DRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIF 398
D +T+ S +SA LGD GR HGYV++ G S+CN++I MY+ G A ++F
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 399 DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAME 458
M K VSW ++I+G KNG +P ++A+E
Sbjct: 347 SRMETKDAVSWTAMISGYEKNG-----------LP--------------------DKALE 375
Query: 459 LFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA 518
+ +M + + D +T+ V SAC LG LD+ ++ E+ G+ + +A AL++M++
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 519 RCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVG 578
+C +A++VF + ++DV +WT+ I + + +A+ F +ML +KP+S+ +
Sbjct: 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIA 494
Query: 579 VLTACSHGGLVNQG----WHLFRSMTDIHGVSPQ-------------------------I 609
L+AC+ G + G H+ R+ G P +
Sbjct: 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV 554
Query: 610 VHYGCMVDLLGRAGLLGEALDLIKSM---PVEPNDVIWGSLLAACQKHQNV 657
V + ++ G A++L M V P++V + SLL AC + V
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (527), Expect = 7e-56
Identities = 125/460 (27%), Positives = 210/460 (45%), Gaps = 35/460 (7%)
Query: 214 CARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKAN 273
C+ L ++A+ L M E + + V + C + +E G RVC+
Sbjct: 62 CSHGQL-EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 274 ALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333
+ NA++ M+++ G + A +FG+ +R+L N ++ Y + G EAL + ML
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 334 HGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEM 393
G RPD T + + DL GR H +V+R G E + N +I MY+KCG
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG---- 236
Query: 394 ACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMF 453
DV SAR VF MP RD ISWN M+ G +
Sbjct: 237 ---------------------------DVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 454 EEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATAL 513
E +ELF M + D +T+ V SAC LG L + ++ Y+ K G D+ + +L
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 514 VDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS 573
+ M+ G A +VF RME +D +WTA I G ++A+E + M + + PD
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIK 633
I VL+AC+ G ++ G L + + G+ +V ++++ + + +AL++
Sbjct: 390 ITIASVLSACACLGDLDVGVKL-HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448
Query: 634 SMPVEPNDVIWGSLLAA-CQKHQNVDIAAYAAERITELDP 672
++P E + + W S++A ++ + + + + L P
Sbjct: 449 NIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-50
Identities = 119/441 (26%), Positives = 201/441 (45%), Gaps = 36/441 (8%)
Query: 121 EAISLYVEL-AGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCL 179
EA+ L+ L AG T+ ++ AC + V+ + GF+ D ++ N +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 180 INFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNS 239
+ + +CG ++D RR+FDEM ERN+ SW ++I +EA LF EM E+G
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224
Query: 240 VTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGE 299
T V ++ A A L + G ++ + + G+ + + AL+DMY KCG ++ A+ +F
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284
Query: 300 CKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCG 359
++ V N++++ Y G + EAL + EM G D+ T + ++L L
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
Query: 360 RMCHGYVLRNGLEGWDSICNT-MIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418
+ H ++R G D + NT ++D+Y K W
Sbjct: 345 KQAHAGLIRTGFP-LDIVANTALVDLYSK---------------------W--------- 373
Query: 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV 478
G +E AR VF MP ++ ISWN ++ G +A+E+F M++E + + VT + V
Sbjct: 374 -GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 479 ASACGYLGALDLAKWIYAYIEKN-GIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KR 536
SAC Y G + I+ + +N I ++++ R G A + RR K
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492
Query: 537 DVSAWTAAIGAMAMEGNGEQA 557
V+ W A + A + N E
Sbjct: 493 TVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 7e-36
Identities = 80/269 (29%), Positives = 133/269 (49%), Gaps = 5/269 (1%)
Query: 86 AQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVL 145
A++ FD + N S + ++I G G EA +L+ E+ G + TF +L
Sbjct: 177 ARRLFDEMPERNLAS-----WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 146 NACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVV 205
A + G Q+H ++K G D FV LI+ Y +CGDI D R VFD M E+ V
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291
Query: 206 SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYI 265
+W S++ A +EA+ L++EM + G+ + T +I ++L LE + A +
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 266 DELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREAL 325
G + + ALVD+Y K G ++ A+ +F +NL+ N +++ Y G +A+
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411
Query: 326 AILDEMLLHGPRPDRVTMLSAVSASAQLG 354
+ + M+ G P+ VT L+ +SA G
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSG 440
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-28
Identities = 78/284 (27%), Positives = 134/284 (47%), Gaps = 22/284 (7%)
Query: 410 NSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIK 469
N++++ ++ G++ A VF +MP RD SWN ++GG + F+EA+ L+ ML ++
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 470 VDRVTMVGVASACGYLGALDLA--KWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527
D T V CG G DLA + ++A++ + G D+ + AL+ M+ +CGD A
Sbjct: 185 PDVYTFPCVLRTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 528 QVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG 587
VF RM +RD +W A I G + +ELF M + PD + V++AC G
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302
Query: 588 LVNQGWHLFRSMTDIH------GVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPND 641
G ++H G + + ++ + G GEA + M E D
Sbjct: 303 DERLG-------REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKD 353
Query: 642 VI-WGSLLAACQKHQNVDIA--AYAAERITELDPEKSGVHVLLS 682
+ W ++++ +K+ D A YA + P++ + +LS
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 5e-21
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 23/132 (17%)
Query: 710 PGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEK 769
PG E + SGD SHP L + R++ G VP+ + DVD +E
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPT---SKEELFQ---RIKVEGVVPETKEIGHDVDAEEF 50
Query: 770 KY------LLSHHSEKLAMAFGLISTSKTMPIRVVKNL-RLCCDCHSFAKLVSKVYDREI 822
+ LL+ H+EK A+A+GL++T R++K L R+C DCH F + ++K REI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 823 IVRDNNRFHFFR 834
IVRD +RFH F+
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 2e-17
Identities = 77/336 (22%), Positives = 147/336 (43%), Gaps = 20/336 (5%)
Query: 342 TMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHM 401
ML +V AS+Q D+ V GL+ + T+I K GK + +F M
Sbjct: 441 NMLMSVCASSQ--DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 402 SNK----TVVSWNSLIAGLIKNGDVESAREVFSEMPGR----DHISWNTMLGGLTQENMF 453
N V ++ +LI G + G V A + M + D + +N ++ Q
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 454 EEAMELFRVMLSER--IKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT 511
+ A ++ M +E I D +T+ + AC G +D AK +Y I + I ++ T
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 512 ALVDMFARCGDPQRAMQVFRRMEKRDVSA----WTAAIGAMAMEGNGEQAVELFNEMLRQ 567
V+ ++ GD A+ ++ M+K+ V ++A + G+ ++A E+ + +Q
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 568 GIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGE 627
GIK ++ + ++ ACS+ + L+ + I + P + ++ L L +
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPK 737
Query: 628 A---LDLIKSMPVEPNDVIWGSLLAACQKHQNVDIA 660
A L +K + + PN + + LL A ++ + D+
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-15
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 3/209 (1%)
Query: 447 LTQENMFEEAMELFRVM-LSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC 505
L EA+ELF ++ + T + AC L ++ K +Y ++E +G
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 506 DMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEML 565
D + ++ M +CG A ++F M +R++++W IG + GN +A LF EM
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 566 RQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL 625
G + FV +L A + G G L + V V ++D+ + G +
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDI 275
Query: 626 GEALDLIKSMPVEPNDVIWGSLLAACQKH 654
+A + MP E V W S+LA H
Sbjct: 276 EDARCVFDGMP-EKTTVAWNSMLAGYALH 303
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-11
Identities = 98/420 (23%), Positives = 178/420 (42%), Gaps = 50/420 (11%)
Query: 213 ACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKA 272
AC ++ KEA + F +++ P T ++S CA Q+++ RV + E G+KA
Sbjct: 415 ACKKQRAVKEA-FRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA 470
Query: 273 NALMVNALVDMYMKCGAVDTAKQLFGECK----DRNLVLCNTIMSNYVRLGLAREALAIL 328
+ + L+ K G VD ++F E + N+ ++ R G +A
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 329 DEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKC 388
M +PDRV + +SA CG+ G V R +D + +M
Sbjct: 531 GIMRSKNVKPDRVVFNALISA--------CGQS--GAVDR----AFD----VLAEM---- 568
Query: 389 GKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHIS-----WNTM 443
K E DH ++ +L+ G V+ A+EV+ +M +I +
Sbjct: 569 -KAETHPIDPDH------ITVGALMKACANAGQVDRAKEVY-QMIHEYNIKGTPEVYTIA 620
Query: 444 LGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGI 503
+ +Q+ ++ A+ ++ M + +K D V + G+ G LD A I K GI
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680
Query: 504 HCDMQLATALVDMFARCGDPQRAMQVFRRME----KRDVSAWTAAIGAMAMEGNG-EQAV 558
++L+ + + ++A++++ ++ + VS A I A+ EGN +A+
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC-EGNQLPKAL 739
Query: 559 ELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618
E+ +EM R G+ P++I + +L A + G L S G+ P +V C+ L
Sbjct: 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL-SQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-10
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 203 NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAK 251
+VV++ +LI ++ +EA+ LF EM + GIKPN T +I K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 404 KTVVSWNSLIAGLIKNGDVESAREVFSEMPGR----DHISWNTMLGGL 447
VV++N+LI G K G VE A ++F+EM R + +++ ++ GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 57/273 (20%), Positives = 105/273 (38%), Gaps = 54/273 (19%)
Query: 23 QHKAKTTPKDSPSIGSLKNCKTLNEL---KQPHCHILKQGLGHK---PSYISKVVCTCAQ 76
Q P I +L C + L K+ H H+L+ G+G P+ + + C +
Sbjct: 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 77 MGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILP 136
M YA F+ + KD + +N L+ GY G G A+ L+ + G+ P
Sbjct: 540 MN------YAWNQFNSHEKD------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 137 DKFTFPFVLNACTKSSAFGEGVQV-HGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRV 195
D+ TF +L AC++S +G++ H K ++ C+++ G G + +
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 196 FDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNL 255
++M I P+ +++AC +++
Sbjct: 648 INKMP----------------------------------ITPDPAVWGALLNACRIHRHV 673
Query: 256 ELGDRVCAYIDELGMKANALMVNALVDMYMKCG 288
ELG+ +I EL + + L ++Y G
Sbjct: 674 ELGELAAQHIFELDPNSVGYYI-LLCNLYADAG 705
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH 585
DV + I +G E+A++LFNEM ++GIKP+ + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 6e-07
Identities = 88/364 (24%), Positives = 146/364 (40%), Gaps = 50/364 (13%)
Query: 140 TFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEM 199
TF +++ C S ++V + + G D + LI+ + G + VF EM
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 200 S----ERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNL 255
E NV ++ +LI CAR +A + M + +KP+ V +ISAC + +
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 256 ELGDRVCAYIDELGMKANA-------LMVNALVDMYMKCGAVDTAKQLFGECKDRNL--- 305
DR + E MKA + V AL+ G VD AK+++ + N+
Sbjct: 559 ---DRAFDVLAE--MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 306 VLCNTIMSNYVRL-GLAREALAILDEMLLHGPRPDRVTMLSA---VSASAQLGDLLCGRM 361
TI N G AL+I D+M G +PD V SA V+ A D +
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV-FFSALVDVAGHAGDLDKAFEIL 672
Query: 362 CH--------GYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMS----NKTVVSW 409
G V + L G + N + A +++ + TV +
Sbjct: 673 QDARKQGIKLGTVSYSSLMG--ACSNA--------KNWKKALELYEDIKSIKLRPTVSTM 722
Query: 410 NSLIAGLIKNGDVESAREVFSEMP--GR--DHISWNTMLGGLTQENMFEEAMELFRVMLS 465
N+LI L + + A EV SEM G + I+++ +L +++ + ++L
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 466 ERIK 469
+ IK
Sbjct: 783 DGIK 786
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 63/270 (23%), Positives = 101/270 (37%), Gaps = 60/270 (22%)
Query: 45 LNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLF 104
L KQ H +++ G + +V ++ G E A+ FD + N L
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED---ARNVFDRMPRKN-----LI 392
Query: 105 MYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAI 164
+N+LI GY G G +A+ ++ + G+ P+ TF VL+AC S
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG------------ 440
Query: 165 VKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICAC-----ARRDL 219
E G +F MSE + + ++ AC R L
Sbjct: 441 ---------LSE--------------QGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477
Query: 220 PKEAVYLFFEMVEEG-IKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGM---KANAL 275
EA + M+ KP +++AC +NLELG + GM K N
Sbjct: 478 LDEA----YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL--YGMGPEKLNNY 531
Query: 276 MVNALVDMYMKCGAVDTAKQLFGECKDRNL 305
+V L+++Y G A ++ K + L
Sbjct: 532 VV--LLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 405 TVVSWNSLIAGLIKNGDVESAREVFSEMP 433
VV++N+LI GL + G V+ A E+ EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNS 239
V++ +LI + +EA+ LF EM E GI+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVT 474
D +++NT++ G ++ EEA++LF M IK + T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-05
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 378 CNTMIDMYMKCGKQEMACRIFDHMSNK----TVVSWNSLIAGLIK 418
NT+ID Y K GK E A ++F+ M + V +++ LI GL K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 407 VSWNSLIAGLIKNGDVESAREVFSEM 432
V++NSLI+G K G +E A E+F EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 8e-05
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 172 DVFVENCLINFYGECGDIVDGRRVFDEMSER----NVVSWTSLICACAR 216
DV N LI+ Y + G + + ++F+EM +R NV +++ LI +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGI 235
V++ SLI + +EA+ LF EM E+G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 14/235 (5%)
Query: 25 KAKTTP--KDSPSIGSL-KNCKTLNEL---KQPHCHILKQGLGHKPSYISKVVCTCAQMG 78
KA+T P D ++G+L K C ++ K+ + I + + P + V +C+Q G
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 79 TFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDK 138
++ +A +D K +F +++L+ G +A + + GI
Sbjct: 629 DWD---FALSIYDDMKKKGVKPDEVF-FSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 139 FTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDE 198
++ ++ AC+ + + + ++++ I + V N LI E + V E
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 199 MSER----NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISAC 249
M N ++++ L+ A R+D + L + E+GIKPN V C+ C
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 438 ISWNTMLGGLTQENMFEEAMELFRVMLSERIKVD 471
+++NT++ GL + EEA+ELF+ M I+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 304 NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVT 342
++V NT++ Y + G EAL + +EM G +P+ T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 438 ISWNTMLGGLTQENMFEEAMELFRVMLSERI 468
+++N+++ G + EEA+ELF+ M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 7/214 (3%)
Query: 134 ILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGR 193
I PD T ++ AC + +V+ I + V +N + GD
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 194 RVFDEMSERNV----VSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISAC 249
++D+M ++ V V +++L+ +A + + ++GIK +V+ ++ AC
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 250 AKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLC- 308
+ +N + + I + ++ +NAL+ + + A ++ E K L LC
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK--RLGLCP 752
Query: 309 NTIMSNYVRLGLAREALAILDEMLLHGPRPDRVT 342
NTI + + + R+ A + LL + D +
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 6e-04
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 106 YNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTK 150
YN+LI GY G EA+ L+ E+ GI P+ +T+ +++ K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS 573
+ I + G E+A+ELF EM +GI+PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 204 VVSWTSLICACARRDLPKEAVYLFFEMVEEGIKP 237
+ ++ +L+ A A+ P A+ + EM G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 8e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 407 VSWNSLIAGLIKNGDVESAREVFSEMPGRDH 437
V++N+LI GL K G VE A E+F EM R
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 511 TALVDMFARCGDPQRAMQVFRRMEKRDVSA 540
AL+ A+ GDP A+ V M+ +
Sbjct: 5 NALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 406 VVSWNSLIAGLIKNGDVESAREVFSEM 432
+ ++N+L+ L K GD + A V EM
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEM 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 844 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.34 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.3 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.29 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.29 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.11 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.1 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.08 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.06 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.04 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.03 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.01 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.0 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.96 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.96 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.93 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.92 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.66 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.63 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.6 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.45 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.45 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.42 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.39 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.3 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.89 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.88 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.69 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.69 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.64 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.57 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.54 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.52 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.44 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.35 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.27 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.24 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.13 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.11 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.01 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.01 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.0 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.0 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.85 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.72 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.71 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.59 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.53 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.47 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.42 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.42 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.38 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.35 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.35 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.16 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.15 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.14 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.05 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.94 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.72 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.32 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.1 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.62 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.36 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.25 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.22 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.22 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.16 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.94 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.8 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.61 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.74 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.68 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.39 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.99 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.82 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.8 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.41 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.33 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.12 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.09 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.79 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 89.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.93 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.72 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.6 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.53 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.38 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.21 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.14 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.59 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 86.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.26 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.13 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.11 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.86 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.05 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.62 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.31 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.76 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 83.7 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.45 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.25 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 83.0 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.68 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.45 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.16 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.32 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.16 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.83 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.75 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 80.61 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-148 Score=1324.04 Aligned_cols=772 Identities=37% Similarity=0.656 Sum_probs=754.4
Q ss_pred CCCCcchHHHHhcccC---hhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCccc
Q 003148 29 TPKDSPSIGSLKNCKT---LNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFM 105 (844)
Q Consensus 29 ~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~ 105 (844)
.|+..++..+++.|.. +..+.++|..+++.|+.+++.++|+||++|+++|+ ++.|+++|+ +|+.||+++
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~---~~~A~~~f~-----~m~~~d~~~ 154 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE---LVHAWYVFG-----KMPERDLFS 154 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC---hHHHHHHHh-----cCCCCCeeE
Confidence 4566677777877753 67789999999999999999999999999999999 999999999 999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 003148 106 YNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGE 185 (844)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 185 (844)
||+||++|++.|++++|+++|++|...|+.||.+||++++++|++.+++..+.++|..+++.|+.+|+.++|+||++|++
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 003148 186 CGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYI 265 (844)
Q Consensus 186 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 265 (844)
+|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|+++|..|
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 003148 266 DELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLS 345 (844)
Q Consensus 266 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 345 (844)
.+.|+.||..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 003148 346 AVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESA 425 (844)
Q Consensus 346 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 425 (844)
++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------------------- 452 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---------------------- 452 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC
Q 003148 426 REVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC 505 (844)
Q Consensus 426 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 505 (844)
+|+++||+||.+|+++|+.++|+.+|++|.. +++||.+||+++|.+|++.|.++.++++|..+.+.|+.+
T Consensus 453 ---------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 453 ---------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred ---------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 7888888888888889999999999999986 599999999999999999999999999999999999999
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH 585 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (844)
|..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
.|++++|.++|+.|.+.+|+.|+..||++|+++|+|+|++++|.+++++|+++||..+|++|+++|+.+|+.+.|+.+++
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999977999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Q 003148 666 RITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMN 745 (844)
Q Consensus 666 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 745 (844)
++++++|++++.|+.|+|+|+..|+|++|.++++.|+++|++|.||+|||++++++|.|++||++||+.++||.+|++|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccCCCCCcccccchHHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccCCchhhhhHhhhcccceeEEee
Q 003148 746 CRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVR 825 (844)
Q Consensus 746 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~ 825 (844)
.+|++.||+||+..++ +++|++|+..|++||||||+|||||+||+|+||||+||||||+|||+++||||++++||||||
T Consensus 762 ~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 840 (857)
T PLN03077 762 EKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840 (857)
T ss_pred HHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEe
Confidence 9999999999999888 558889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCccccCCC
Q 003148 826 DNNRFHFFRQGSCSCSD 842 (844)
Q Consensus 826 d~~~~h~~~~g~csc~~ 842 (844)
|.+|||||++|+|||||
T Consensus 841 d~~rfh~f~~g~csc~d 857 (857)
T PLN03077 841 DTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCcceeCCCCcccCCC
Confidence 99999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-125 Score=1098.44 Aligned_cols=613 Identities=36% Similarity=0.620 Sum_probs=602.8
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHH
Q 003148 201 ERNVVSWTSLICACARRDLPKEAVYLFFEMVEEG-IKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNA 279 (844)
Q Consensus 201 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 279 (844)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhH
Q 003148 280 LVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCG 359 (844)
Q Consensus 280 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 359 (844)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..|+++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 003148 360 RMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHIS 439 (844)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 439 (844)
+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.+ +|+++
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------------------------------KTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------------CChhH
Confidence 99999999999999999999999999999999999999999988 77888
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 519 (844)
||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|+++|..+.+.|+.||..++|+||++|+|
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 520 CGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
.+++|+.|+..+|++||++|+++|++++|.++|++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCccCCCCC
Q 003148 680 LLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTN 759 (844)
Q Consensus 680 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~ 759 (844)
.|+++|++.|+|++|.++++.|+++|++|.||+|||++++++|.|++||.+||+.++||.+|.++..+|++.||+||+.+
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccCCchhhhhHhhhcccceeEEeecCCccccccCcccc
Q 003148 760 VLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCS 839 (844)
Q Consensus 760 ~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~cs 839 (844)
++||+++++|+..|++||||||+|||||++|+|+||||+||||||+|||+|+||||++++|+|||||.+|||||++|+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 003148 840 CSDFW 844 (844)
Q Consensus 840 c~~~w 844 (844)
|||||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-85 Score=782.33 Aligned_cols=686 Identities=25% Similarity=0.397 Sum_probs=615.6
Q ss_pred CCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 003148 99 TSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENC 178 (844)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 178 (844)
+.++..++|.+|.+|++.|++++|+.+|+.|.+.|++|+..+|..++++|.+.+.++.|.++|..+.+.|..+++.++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHH
Q 003148 179 LINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELG 258 (844)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 258 (844)
||++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003148 259 DRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRP 338 (844)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 338 (844)
.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+.|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 003148 339 DRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418 (844)
Q Consensus 339 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 418 (844)
|..||++++.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------- 351 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--------------- 351 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHH
Q 003148 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYI 498 (844)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 498 (844)
+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+
T Consensus 352 ----------------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 352 ----------------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred ----------------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH
Q 003148 499 EKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVG 578 (844)
Q Consensus 499 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 578 (844)
.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|.++|+.++|+++|++|.+ +++||.+||.+
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 69999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 658 (844)
++.+|++.|.+++|.+++..+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.+
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHH
Confidence 99999999999999999999998 899999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEecCCCCCcchH
Q 003148 659 IAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK-EQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMN 735 (844)
Q Consensus 659 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~ 735 (844)
+|.++++++.+ ..|+. .+|..+..+|.+.|++++|.++++.|+ +.|+.+....- ...-
T Consensus 572 ~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y------------------~~lv 632 (857)
T PLN03077 572 MAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY------------------ACVV 632 (857)
T ss_pred HHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH------------------HHHH
Confidence 99999999987 45654 688899999999999999999999999 56764432100 0011
Q ss_pred HHH---HHHHHHHHHHHHcCccCCCCCcccccchHHHhhhhhhhhHHHH-HHHHhcCCCCCCcEEEEeccccCCchhhhh
Q 003148 736 NIS---SMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLA-MAFGLISTSKTMPIRVVKNLRLCCDCHSFA 811 (844)
Q Consensus 736 ~i~---~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~ 811 (844)
.++ ..+++..+.+++++..||...|..-+..+...+.+- -.|+.| ..+.+.|...+.-+-+..-....|+-.++.
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 111 134555666667789999877655555443322111 112222 335566655555544444456788899999
Q ss_pred HhhhcccceeEEe-------ecCCccccccCcccc
Q 003148 812 KLVSKVYDREIIV-------RDNNRFHFFRQGSCS 839 (844)
Q Consensus 812 ~~~s~~~~~~~~~-------~d~~~~h~~~~g~cs 839 (844)
+.-..|..+.+-. --.+..|-|..|--|
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 9888777662221 113567888666544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-71 Score=646.18 Aligned_cols=475 Identities=25% Similarity=0.387 Sum_probs=458.2
Q ss_pred CCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 003148 99 TSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFG-ILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN 177 (844)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 177 (844)
..++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34677899999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchH
Q 003148 178 CLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLEL 257 (844)
Q Consensus 178 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 257 (844)
+|+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003148 258 GDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPR 337 (844)
Q Consensus 258 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 337 (844)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 003148 338 PDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLI 417 (844)
Q Consensus 338 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 417 (844)
||..||++++.+|++.|+++.|+++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------------- 388 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------------- 388 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHH
Q 003148 418 KNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAY 497 (844)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 497 (844)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++|.++|..
T Consensus 389 -----------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 389 -----------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred -----------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-h
Q 003148 498 IEK-NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-I 574 (844)
Q Consensus 498 ~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ 574 (844)
|.+ .|+.|+..+|++++++|+++|++++|.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+. .
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~ 529 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN 529 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc
Confidence 975 6999999999999999999999999999999998 78999999999999999999999999999976 77864 6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
+|..+++.|++.|++++|.++++.|.+ .|+.+
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 899999999999999999999999988 67653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-70 Score=636.49 Aligned_cols=534 Identities=17% Similarity=0.207 Sum_probs=482.9
Q ss_pred CCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 003148 60 LGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKF 139 (844)
Q Consensus 60 ~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 139 (844)
-.++...+..++..+.++|+ +++|+++|++|.+.....++...++.++.+|.+.|..++|+.+|+.|.. ||..
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~---l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGR---IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcC---HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 34578889999999999999 9999999996665444556666777888899999999999999999975 9999
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcccHHHHHHHHH
Q 003148 140 TFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS----ERNVVSWTSLICACA 215 (844)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~ 215 (844)
+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||.++||+||.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 589999999999999
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhcCCHHHH
Q 003148 216 RRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDE--LGMKANALMVNALVDMYMKCGAVDTA 293 (844)
Q Consensus 216 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A 293 (844)
+.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999987 67899999999999999999999999
Q ss_pred HHHHHhcCCC----CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHh
Q 003148 294 KQLFGECKDR----NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRN 369 (844)
Q Consensus 294 ~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 369 (844)
.++|++|.+. +.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|..|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999864 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccc
Q 003148 370 GLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ 449 (844)
Q Consensus 370 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 449 (844)
|+.||..+|++||++|+++|++++|.++|++|...+.. ||.++||+||.+|++
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~---------------------------PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR---------------------------PTVSTMNALITALCE 731 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------------------------CCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999642211 788888888899999
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhH----HhcCCHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMF----ARCGDPQR 525 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~k~g~~~~ 525 (844)
.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .++++..+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 44555544
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC
Q 003148 526 AMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGV 605 (844)
Q Consensus 526 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 605 (844)
+...|+.+...+...|+ ++|+.+|++|++.|+.||.+||..++.++...+..+.+..+++.|.. .+.
T Consensus 812 ~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~ 878 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SAD 878 (1060)
T ss_pred hhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCC
Confidence 54555444444444454 56999999999999999999999999777788888888888877765 567
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCCCChH
Q 003148 606 SPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVEPNDV 642 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~~~ 642 (844)
.|+..+|++||+++++. .++|..++++| ++.|+..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77888999999998532 46899999999 7888765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=601.37 Aligned_cols=552 Identities=19% Similarity=0.264 Sum_probs=471.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccH-----HHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 003148 170 DRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSW-----TSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVC 244 (844)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 244 (844)
.++...|..+++.++++|++++|+++|++|++++.+.| +.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 46677888889999999999999999999988766544 5566779999999999999999864 89999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCceehHHHHHHHHHcCC
Q 003148 245 VISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK----DRNLVLCNTIMSNYVRLGL 320 (844)
Q Consensus 245 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 320 (844)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4789999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH--hCCCchhhHHHHHHHHHHHcCCHHHHHHHH
Q 003148 321 AREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLR--NGLEGWDSICNTMIDMYMKCGKQEMACRIF 398 (844)
Q Consensus 321 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (844)
+++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhH
Q 003148 399 DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV 478 (844)
Q Consensus 399 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 478 (844)
+.|.+.++. ++..+||++|.+|++.|++++|+++|++|.+.|+.||.+||+.+
T Consensus 603 ~~M~e~gi~---------------------------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 603 QMIHEYNIK---------------------------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred HHHHHcCCC---------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999874432 57788888888888899999999999999999999999999999
Q ss_pred HHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCCh
Q 003148 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME----KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 479 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 554 (844)
+.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++.|+.
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999995 68999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hcC-------
Q 003148 555 EQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLG----RAG------- 623 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g------- 623 (844)
++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++++++. +++
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~ 814 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVV 814 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999988 899999999999987743 222
Q ss_pred ------------ChHHHHHHHHhC---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHH
Q 003148 624 ------------LLGEALDLIKSM---PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE-LDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 624 ------------~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~ 687 (844)
..++|..+|++| ++.||..+|+.+++++.+.+..+.+..+++.+.. -.+.+..+|..|.+.+
T Consensus 815 ~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~-- 892 (1060)
T PLN03218 815 SFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF-- 892 (1060)
T ss_pred hhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--
Confidence 236799999999 8999999999999777788888888888876542 3445567888888876
Q ss_pred cCCc-hHHHHHHHHHHhCCCccCCcc-cEEEECCEEEEEecCCCCCcchHH--HHHHHHHHHHHHHHcCccCCCCCcccc
Q 003148 688 AGKW-TNVARVRLQMKEQGIRKLPGS-SSIEVNGKVHEFTSGDESHPEMNN--ISSMLREMNCRLRDAGYVPDLTNVLLD 763 (844)
Q Consensus 688 ~g~~-~~a~~~~~~m~~~~~~~~~~~-s~~~~~~~~~~f~~~~~~~~~~~~--i~~~l~~l~~~~~~~g~~~~~~~~~~~ 763 (844)
|++ ++|..+++.|.+.|+.+.... .+ .+.-.++.|-. -+.+ +...|..+.+.+...-..|.....++.
T Consensus 893 -~~~~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~~------~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 893 -GEYDPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELPV------FAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred -ccChHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCcc------hhHHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 444 589999999999998655431 11 22222333322 2222 334555666555443355665554555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=351.52 Aligned_cols=645 Identities=12% Similarity=0.051 Sum_probs=478.1
Q ss_pred cChhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHH
Q 003148 43 KTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEA 122 (844)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 122 (844)
+....+..+...+++.. +++...+..+...+...|+ .+.|...|+.++ ...+.+...|..++..+...|++++|
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~--~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 173 NRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGN---IELALAAYRKAI--ALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCC---HHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44555555554444332 2234444445555555555 555555555444 22233444455555555555555555
Q ss_pred HHHHHHHHhCCC--------------------------------CCCc-ccHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 003148 123 ISLYVELAGFGI--------------------------------LPDK-FTFPFVLNACTKSSAFGEGVQVHGAIVKMGF 169 (844)
Q Consensus 123 ~~~~~~m~~~g~--------------------------------~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 169 (844)
...++.+.+... .|+. ..+..+...+...|+++.|...+..+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 325 (899)
T TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA- 325 (899)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 555555443221 1221 112223334455666777777777666654
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 003148 170 DRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVI 246 (844)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 246 (844)
+.+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 404 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLG 404 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34556666777777788888888888877653 345567777888888888888888888877643 12344556666
Q ss_pred HHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCceehHHHHHHHHHcCChHH
Q 003148 247 SACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD---RNLVLCNTIMSNYVRLGLARE 323 (844)
Q Consensus 247 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 323 (844)
..+...|+.+.|.+.+..+.+... .+......++..|.+.|++++|.++++++.. .+..+|+.+...|...|++++
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 677778888888888888777652 2344556677888888888888888888764 355678888888999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 003148 324 ALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN 403 (844)
Q Consensus 324 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 403 (844)
|.+.|.++.+... .+...+..+...+...|+.+.|.+.+..+++.. +.+..++..+...|.+.|+.++|...|+++..
T Consensus 484 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988876532 234456667777788889999999988887764 33567788888899999999999999988754
Q ss_pred ---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHh
Q 003148 404 ---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVG 477 (844)
Q Consensus 404 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 477 (844)
.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..
T Consensus 562 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3556778888999999999999999988764 356688889999999999999999999987643 224556777
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 554 (844)
+..++...|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+. ..+...|..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 7778888999999999998887754 4457788889999999999999999999887 34567788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 555 EQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
++|++.|+++.+ ..|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|+.++|.+.|++
T Consensus 720 ~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999998 5677777888889999999999999999998872 234477888899999999999999999998
Q ss_pred C-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+ ...| +..+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8 3344 67789999999999999 889999999999999999999999999999999999999999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=352.03 Aligned_cols=606 Identities=13% Similarity=0.105 Sum_probs=507.7
Q ss_pred hhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHH
Q 003148 83 LTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHG 162 (844)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (844)
++.|...|+.+++. .+.+...+..+...+...|++++|...|+++.... +.+...+..+...+...|+++.|...+.
T Consensus 277 ~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 277 YEDARETLQDALKS--APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555544321 11122233444456677888888888888877643 3345567777888889999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc
Q 003148 163 AIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNS 239 (844)
Q Consensus 163 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 239 (844)
.+.+.. +.+..+++.+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|++.|+++.+.... +.
T Consensus 354 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 431 (899)
T TIGR02917 354 PALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LG 431 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-ch
Confidence 998776 56778899999999999999999999998764 34567888889999999999999999999876533 23
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCceehHHHHHHHH
Q 003148 240 VTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD---RNLVLCNTIMSNYV 316 (844)
Q Consensus 240 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 316 (844)
.....++..+.+.|+++.|.+++..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...+..+...+.
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 510 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 445567778889999999999999998753 55778999999999999999999999998754 35567888899999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHH
Q 003148 317 RLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACR 396 (844)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 396 (844)
..|++++|.+.|+++..... .+..++..+...+...|+.+.+...+..+.+.. +.+...+..++..|.+.|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999988643 356678888888899999999999999988765 3456677889999999999999999
Q ss_pred HHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHHHHHHHHhCCccc
Q 003148 397 IFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKV 470 (844)
Q Consensus 397 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 470 (844)
+++.+.+ .+...|..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 9999874 4677899999999999999999999998754 356678889999999999999999999998742 33
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAM 548 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 548 (844)
+..++..+...+...|+++.|..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL 746 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 46778888888999999999999999998876 4567788889999999999999999999886 45557788899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 627 (844)
.+.|+.++|.+.++++++ ..|+ ...+..+...|...|+.++|.++|+++.+. .+++...+..+..++.+.|+ .+
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HH
Confidence 999999999999999998 4455 467888888999999999999999999882 23457789999999999999 88
Q ss_pred HHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 628 ALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 628 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|+++++++ ...| +..+|..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999988 5555 4568888888999999999999999999999999999999999999999999999999998863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=245.38 Aligned_cols=106 Identities=63% Similarity=1.003 Sum_probs=98.3
Q ss_pred cccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCccCCCCCcccccchHHH--------hhhhhhhhHHHHH
Q 003148 711 GSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEK--------KYLLSHHSEKLAM 782 (844)
Q Consensus 711 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~h~e~la~ 782 (844)
|+||+++ |.|++||.+||+. ++..++...||.|++..++|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899977 9999999999998 456677888999999999999888766 5688999999999
Q ss_pred HHHhcCCCCCCcEEEEecc-ccCCchhhhhHhhhcccceeEEeecCCcccccc
Q 003148 783 AFGLISTSKTMPIRVVKNL-RLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFR 834 (844)
Q Consensus 783 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 834 (844)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-24 Score=267.04 Aligned_cols=610 Identities=10% Similarity=-0.007 Sum_probs=410.2
Q ss_pred HHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH----------
Q 003148 72 CTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTF---------- 141 (844)
Q Consensus 72 ~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---------- 141 (844)
..+...++ .+.|++.++++. .+.+.|...+..++..+.+.|+.++|...++++.+.. |+...+
T Consensus 36 ~~~~~~~~---~d~a~~~l~kl~--~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 36 RLGEATHR---EDLVRQSLYRLE--LIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHhhCC---hHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 34445555 666666666554 3444455556666666666666666666666666533 333221
Q ss_pred -------HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCChHHHHHHHhhcCC--C-CcccHHHH
Q 003148 142 -------PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN-CLINFYGECGDIVDGRRVFDEMSE--R-NVVSWTSL 210 (844)
Q Consensus 142 -------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~l 210 (844)
....+.+...|++++|.+.++.+.+.. +++..... -+.......|+.++|++.|+++.. | +...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 112234555666666666666666543 22221111 111112234666666666666553 2 23345556
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCC----------------CCCcch---HHHHHHHHHhcCCchHHHHHHHHHHHhCCC
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGI----------------KPNSVT---MVCVISACAKLQNLELGDRVCAYIDELGMK 271 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~----------------~pd~~t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 271 (844)
...+...|++++|+..|+++..... .++... +...+..+-.....+.+...+....+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 6666666666666666666644211 000000 111111111112233444455444433323
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh-hhHH---
Q 003148 272 ANALMVNALVDMYMKCGAVDTAKQLFGECKD--R-NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDR-VTML--- 344 (844)
Q Consensus 272 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~--- 344 (844)
|+.. ...+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|++.|++..+....... ..+.
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3322 22445667788999999999988754 3 5667888889999999999999999998875432211 1111
Q ss_pred ---------HHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CcchHHHH
Q 003148 345 ---------SAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-TVVSWNSL 412 (844)
Q Consensus 345 ---------~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~l 412 (844)
..-..+...|++++|...+..+++... .+...+..|...|.+.|++++|++.|++..+ | +...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 112345678899999999999887643 3556677889999999999999999998875 3 44566667
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC------------ccccccccccccccCChHHHHHHHHHHHhCCcccC-hhhHHhHH
Q 003148 413 IAGLIKNGDVESAREVFSEMPGRD------------HISWNTMLGGLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVA 479 (844)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 479 (844)
...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+.
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA 502 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLA 502 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 77774 467899999888776421 123444566778899999999999999874 464 34556677
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC----Hh---------HHHHHHH
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD----VS---------AWTAAIG 546 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~----~~---------~~~~li~ 546 (844)
..+...|+.++|...++.+.+... .+...+..+...+.+.|+.++|...++.++... .. .+..+..
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 788999999999999999887542 344445555556778999999999999886321 11 1234566
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCh
Q 003148 547 AMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 547 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 625 (844)
.+...|+.++|+.+++. ..++...+..+...+...|+.++|+..|+.+.+ ..|+ ...+..++.+|...|++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCH
Confidence 78899999999999871 233445677788899999999999999999988 4565 77888999999999999
Q ss_pred HHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCchHHHHH
Q 003148 626 GEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG------VHVLLSNIYASAGKWTNVARV 697 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~ 697 (844)
++|++.+++. ...|+ ...+..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|.+.
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999987 45554 556777888889999999999999999998776543 556679999999999999999
Q ss_pred HHHHHh
Q 003148 698 RLQMKE 703 (844)
Q Consensus 698 ~~~m~~ 703 (844)
++....
T Consensus 734 y~~Al~ 739 (1157)
T PRK11447 734 YKDAMV 739 (1157)
T ss_pred HHHHHh
Confidence 988854
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-22 Score=248.05 Aligned_cols=613 Identities=11% Similarity=0.032 Sum_probs=442.6
Q ss_pred cChhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccH----------------
Q 003148 43 KTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMY---------------- 106 (844)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~---------------- 106 (844)
.+...+++....++..- +.|+.++..+...+.+.|+ .+.|.+.++++.+.. +.+...+
T Consensus 42 ~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~---~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 42 HREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGD---SDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred CChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhH
Confidence 34566666666665432 2367778888899999999 999999999877433 2332222
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 003148 107 NSLIRGYSCIGLGVEAISLYVELAGFGILPDKF-TFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGE 185 (844)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 185 (844)
-.+...+.+.|++++|+..|+.+.... +|+.. ............++.++|...++.+++.. +.+...+..|...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 223446888999999999999998753 33322 11111222234689999999999999886 5677888999999999
Q ss_pred cCChHHHHHHHhhcCCCCc------ccHH-----------------HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH
Q 003148 186 CGDIVDGRRVFDEMSERNV------VSWT-----------------SLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM 242 (844)
Q Consensus 186 ~g~~~~A~~~f~~m~~~~~------~~~~-----------------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 242 (844)
.|+.++|...|+++..... ..|- ..+..+-......+|...+.++......|+...
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~- 272 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA- 272 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-
Confidence 9999999999998754211 1121 111111112223445555555544322333221
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc---eehHHH------
Q 003148 243 VCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNL---VLCNTI------ 311 (844)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l------ 311 (844)
...-.++...|++++|...++..++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 122345667899999999999999875 34678899999999999999999999998765 221 123322
Q ss_pred ------HHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHH
Q 003148 312 ------MSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMY 385 (844)
Q Consensus 312 ------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 385 (844)
...+.+.|++++|++.|++..+... .+...+..+-..+...|+.+.|.+.+..+++... .+...+..+...|
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3456789999999999999998632 2344566677888899999999999999987643 2345566677777
Q ss_pred HHcCCHHHHHHHHhhcCCCC------------cchHHHHHHHHHhcCCHHHHHHHHhhCCCC---Ccccccccccccccc
Q 003148 386 MKCGKQEMACRIFDHMSNKT------------VVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQE 450 (844)
Q Consensus 386 ~~~g~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~ 450 (844)
. .++.++|...++.+.... ...+..+...+...|++++|.+.|++..+. +...+..+...|.+.
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5 467899999998876421 123555678889999999999999988653 445677788899999
Q ss_pred CChHHHHHHHHHHHhCCcccCh-hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCch---------hHHhHHhhhHHhc
Q 003148 451 NMFEEAMELFRVMLSERIKVDR-VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDM---------QLATALVDMFARC 520 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---------~~~~~li~~y~k~ 520 (844)
|++++|...|+++.+. .|+. ..+..+...+...++.++|...+..+......++. .....+.+.+...
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999998864 3433 22323333456678889998888765433222221 1223456778899
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 521 GDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
|+.++|.++++.- ..+...+..+...+.+.|+.++|++.|++.++ ..|+. ..+..+...+...|+.++|.+.++..
T Consensus 587 G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 587 GKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999843 34566778889999999999999999999999 67775 67889999999999999999999988
Q ss_pred HhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 003148 600 TDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-------NDVIWGSLLAACQKHQNVDIAAYAAERITE- 669 (844)
Q Consensus 600 ~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 669 (844)
.+ ..|+ ...+..+..++.+.|++++|.++++++ ...| +..++..+...+...|+.++|+..+++++.
T Consensus 664 l~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 664 PA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred hc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 76 4555 556777888999999999999999987 3222 224666677888999999999999999985
Q ss_pred --cCCCCCc
Q 003148 670 --LDPEKSG 676 (844)
Q Consensus 670 --~~p~~~~ 676 (844)
+.|..+.
T Consensus 741 ~~~~~~~p~ 749 (1157)
T PRK11447 741 SGITPTRPQ 749 (1157)
T ss_pred cCCCCCCCC
Confidence 4454444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-21 Score=229.13 Aligned_cols=592 Identities=11% Similarity=0.015 Sum_probs=408.5
Q ss_pred hcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChH
Q 003148 76 QMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFG 155 (844)
Q Consensus 76 ~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 155 (844)
..|+ .+.|...|+.++ +..+.+...+..|...|.+.|++++|+..+++..+. .|+...|..++... ++..
T Consensus 56 ~~Gd---~~~A~~~l~~Al--~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 56 KNND---EATAIREFEYIH--QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEV 125 (987)
T ss_pred hCCC---HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccCh
Confidence 3488 999999999887 556667888999999999999999999999999875 45555555555333 8889
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHH--------HHhcCChHHHHHHHhhcCCCC--cccHHH-HHHHHHhCCCchHHH
Q 003148 156 EGVQVHGAIVKMGFDRDVFVENCLINF--------YGECGDIVDGRRVFDEMSERN--VVSWTS-LICACARRDLPKEAV 224 (844)
Q Consensus 156 ~a~~~~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~ 224 (844)
.|..+++++++.. +.+..++..+... |.+.+...++++ .....|+ ...... +...|.+.|++++|+
T Consensus 126 kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 126 KSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred hHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999986 5566677767666 888777677776 3333343 433344 488999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHh-cCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003148 225 YLFFEMVEEGIKPNSVTMVCVISACAK-LQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR 303 (844)
Q Consensus 225 ~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 303 (844)
+++.++.+.+... ..-...+-.++.. .++ +.+..++.. .+..|..+..++++.|.+.|+.++|.+++++++.-
T Consensus 203 ~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999986433 3335555556666 356 666666442 34468889999999999999999999999998641
Q ss_pred -----CceehH------------------------------HHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003148 304 -----NLVLCN------------------------------TIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVS 348 (844)
Q Consensus 304 -----~~~~~~------------------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 348 (844)
+..+|- .++..+.+.++++-+.++. .+.|..... .+.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r 348 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EER 348 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHH
Confidence 111111 1234455556665444331 134444432 222
Q ss_pred HHh--hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C----CcchHHHHHHHHHhcC
Q 003148 349 ASA--QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K----TVVSWNSLIAGLIKNG 420 (844)
Q Consensus 349 ~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~----~~~~~~~li~~~~~~g 420 (844)
... ..+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|+.... + +...-+-++..|.+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 222 2345556666666655541 11333333444456778999999999988765 1 2234456777777776
Q ss_pred C---HHHHHHHHh-------------------------hCCC---C--CccccccccccccccCChHHHHHHHHHHHhCC
Q 003148 421 D---VESAREVFS-------------------------EMPG---R--DHISWNTMLGGLTQENMFEEAMELFRVMLSER 467 (844)
Q Consensus 421 ~---~~~A~~~~~-------------------------~m~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 467 (844)
. ..++..+-. .... . +...|..+..++.. ++.++|+..|.+....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~- 505 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR- 505 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence 6 333333211 1111 1 34456666666665 7888888877777654
Q ss_pred cccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH---
Q 003148 468 IKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA--- 544 (844)
Q Consensus 468 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l--- 544 (844)
.|+......+..++...|++++|...+..+... +|+...+..+...+.+.|++++|...|+...+.+...++..
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~L 582 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWL 582 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 366544334444456788888888888876544 23333445666777888888888888887764433333322
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG 623 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 623 (844)
.......|++++|+..|++.++ ..|+...+..+..++.+.|+.++|...+++..+ ..|+ ...+..+...+...|
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 2233345888888888888888 677777788888888888888888888888877 5566 567777888888888
Q ss_pred ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 624 LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 624 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..+....+++.....+++.+.+-+++.
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 5556 45678888888888888888888888888888888888888888888888888888877666
Q ss_pred HhCC
Q 003148 702 KEQG 705 (844)
Q Consensus 702 ~~~~ 705 (844)
-...
T Consensus 738 ~~~~ 741 (987)
T PRK09782 738 WTFS 741 (987)
T ss_pred hhcC
Confidence 5443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-21 Score=223.15 Aligned_cols=574 Identities=11% Similarity=0.013 Sum_probs=399.0
Q ss_pred cHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 105 MYNSLIRGY--SCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 105 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
++..+..++ ...|++++|+..|++..+.... +..++..+.+.+...|+.++|+...++.++.. +.|...+..| ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH
Confidence 444455543 3459999999999999885422 35678888999999999999999999999875 3455555554 22
Q ss_pred HHhcCChHHHHHHHhhcCC--CC-cccHHHHHHH--------HHhCCCchHHHHHHHHHHHcCCCCCcchHHHH-HHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSE--RN-VVSWTSLICA--------CARRDLPKEAVYLFFEMVEEGIKPNSVTMVCV-ISACA 250 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~ 250 (844)
+ ++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ .......|+....... ...+.
T Consensus 121 i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred h---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 2 899999999999874 43 3334333333 6665 55555555 3333344455555555 88999
Q ss_pred hcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHH
Q 003148 251 KLQNLELGDRVCAYIDELGMKANALMVNALVDMYMK-CGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILD 329 (844)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 329 (844)
..++++.+..++..+.+.+.. +......|...|.. .++ +.|..+++...+.+...+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999743 45556677778888 477 999999876555688899999999999999999999999
Q ss_pred HHHhcCCC-CChhhHHHHHHHHhhcCChhh-HHHHHHHHHHhCCCch-hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---
Q 003148 330 EMLLHGPR-PDRVTMLSAVSASAQLGDLLC-GRMCHGYVLRNGLEGW-DSICNTMIDMYMKCGKQEMACRIFDHMSN--- 403 (844)
Q Consensus 330 ~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--- 403 (844)
++...-.. |+..++.-++. +.+.... +..-+ .+ .+.++ ....-.+++.+.+.+.++.+.++...-+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLS---KYSANPVQALANY---TV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred hCcccccCCCccHHHHHHHH---hccCchhhhccch---hh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 98765433 66666554443 3332210 00000 00 00011 11223346666666666666655332111
Q ss_pred --------------------------C---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCC--Cc----ccccccccccc
Q 003148 404 --------------------------K---TVVSWNSLIAGLIKNGDVESAREVFSEMPGR--DH----ISWNTMLGGLT 448 (844)
Q Consensus 404 --------------------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~~~~~li~~~~ 448 (844)
. +....--+.-...+.|+.++|..+|+..... +. ..-+-++..|.
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 0 1111222223356788999999999877652 21 12224455555
Q ss_pred ccCC---hHHHHHH----------------------HHHHHh-CCcccC---hhhHHhHHHHccccCchHHHHHHHHHHH
Q 003148 449 QENM---FEEAMEL----------------------FRVMLS-ERIKVD---RVTMVGVASACGYLGALDLAKWIYAYIE 499 (844)
Q Consensus 449 ~~g~---~~~A~~l----------------------~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 499 (844)
..+. ..+++.+ +..... .+..|+ ...+..+..++. .+..++|...+....
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHH
Confidence 5554 3333333 111111 122233 333333333333 378888888777766
Q ss_pred HhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-HH
Q 003148 500 KNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI-VF 576 (844)
Q Consensus 500 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 576 (844)
... |+......+...+...|++++|...|+++. .++...|..+...+.+.|+.++|...|++.++ ..|+.. .+
T Consensus 504 ~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~--l~P~~~~l~ 579 (987)
T PRK09782 504 QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ--RGLGDNALY 579 (987)
T ss_pred HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCccHHHH
Confidence 554 443333344555568999999999999776 34556677888889999999999999999998 456653 33
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhc
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKH 654 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 654 (844)
..+.......|++++|...+++..+ +.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444556677999999999999988 6788888999999999999999999999998 67775 55778888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-21 Score=195.65 Aligned_cols=449 Identities=14% Similarity=0.120 Sum_probs=301.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 003148 207 WTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMK 286 (844)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 286 (844)
-..|..-..+.|++++|++.-...-+++. .+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 34455566778888888886554433321 111122222223334444444333222222221 2345678888888989
Q ss_pred cCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HhhcCChhhHHHH
Q 003148 287 CGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSA-SAQLGDLLCGRMC 362 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~i 362 (844)
.|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+.- ....|.+.+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999887652 5678888889999999999999998888763 5555443222221 1223444555444
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccc
Q 003148 363 HGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRD---HIS 439 (844)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~ 439 (844)
+...++... .-. +.|+.|...+..+|+...|..-|++...-| ...
T Consensus 207 YlkAi~~qp-~fA-------------------------------iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 207 YLKAIETQP-CFA-------------------------------IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred HHHHHhhCC-cee-------------------------------eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 444433211 112 344444444444444444444444443322 224
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccCh-hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDR-VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA 518 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (844)
|-.|...|...+.+++|+..|.+... .+|+. +.+..+...|-..|.++.|...+++.+.... .-+..|+.|..++-
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALK 331 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHH
Confidence 44455555555555555555555443 23432 3444444445555555555555555554331 12456777777777
Q ss_pred hcCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHH
Q 003148 519 RCGDPQRAMQVFRRME--K-RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 594 (844)
..|++.+|...+.... . .-..+.+.|...|...|..++|..+|....+ +.|.- ..++.|...|-+.|++++|+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 7888888888887766 2 3456788899999999999999999999998 88987 679999999999999999999
Q ss_pred HHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 595 LFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 595 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.+++..+ ++|. ...|+.|...|-..|+.+.|...+.++ .+.|. ....+.|...+.-.|++.+|+..++.+++++
T Consensus 410 ~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 410 CYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999987 8998 789999999999999999999999988 77775 4578899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHH
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
|+.+.+|..|+..+.-.-+|.+-.+.++
T Consensus 487 PDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred CCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 9999999999888777777877433333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=180.53 Aligned_cols=415 Identities=14% Similarity=0.154 Sum_probs=301.1
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHH
Q 003148 248 ACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREA 324 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A 324 (844)
-..+.|++.+|++--..+-..+ +.+....-.+-..|.+..+++....--....+. ...+|..+...+-..|++++|
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHH
Confidence 3445566666665433332221 222222223334455555555443332222222 234677777777777777777
Q ss_pred HHHHHHHHhcCCCCC-hhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 003148 325 LAILDEMLLHGPRPD-RVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN 403 (844)
Q Consensus 325 ~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 403 (844)
+.+++.|++. +|+ ...|..+..++...|+.+.|.+.+...++.. |+..-
T Consensus 136 l~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~c-------------------------- 185 (966)
T KOG4626|consen 136 LALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYC-------------------------- 185 (966)
T ss_pred HHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhh--------------------------
Confidence 7777777764 333 2345555555555555555555555444331 11111
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccccccccccccccCChHHHHHHHHHHHhCCcccCh-hhHHhHH
Q 003148 404 KTVVSWNSLIAGLIKNGDVESAREVFSEMPG--R-DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR-VTMVGVA 479 (844)
Q Consensus 404 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 479 (844)
..+.+.......|++++|...+.+..+ + -.+.|+.|...+..+|+...|++.|++... +.|+. -.|..+-
T Consensus 186 ----a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLG 259 (966)
T KOG4626|consen 186 ----ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLG 259 (966)
T ss_pred ----hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHH
Confidence 111122333334555555555444333 2 367899999999999999999999999876 45653 3566666
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHH
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK--RD-VSAWTAAIGAMAMEGNGEQ 556 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 556 (844)
..+...+.++.|...+..+.... +....++..|.-.|-..|.+|-|+..+++..+ |+ ...|+.|..++...|+..+
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence 77777777777777776665543 23456677788889999999999999998873 33 5799999999999999999
Q ss_pred HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 557 AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 557 A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
|...|.+.+. +.|+. ...+.|..++...|.+++|..+|....+ +.|+ ....+.|...|-..|++++|+.-+++
T Consensus 339 a~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 339 AVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 9999999999 88988 6899999999999999999999999887 7788 67889999999999999999999998
Q ss_pred C-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
. .++|+. ..++.+.+.|...|++..|.+.+.+++.++|.-+.++..|+.+|-..|+..+|..-++...+..
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 8 888974 4899999999999999999999999999999999999999999999999999999998887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-17 Score=187.77 Aligned_cols=417 Identities=14% Similarity=0.062 Sum_probs=274.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHc
Q 003148 242 MVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRL 318 (844)
Q Consensus 242 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~ 318 (844)
+...-..+.+.|+++.|...+...++. .|+...|..+..+|.+.|++++|++.++...+. +...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 444555566677777777777776654 355666667777777777777777777665442 334566666677777
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHH
Q 003148 319 GLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIF 398 (844)
Q Consensus 319 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (844)
|++++|+.-|......+.. +..... .++.-+.+......+...+
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~-----------------------------------~~~~~~l~~~a~~~~~~~l 251 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSA-----------------------------------QAVERLLKKFAESKAKEIL 251 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHH-----------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 7777777666554432111 100000 0011011101112223333
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccc------cccCChHHHHHHHHHHHhCC-cccC
Q 003148 399 DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGL------TQENMFEEAMELFRVMLSER-IKVD 471 (844)
Q Consensus 399 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~------~~~g~~~~A~~l~~~m~~~g-~~p~ 471 (844)
+.-+ ++..++..+.. |......+.+..-+....+.+...-...+..+ ...+++++|++.|++....+ ..|+
T Consensus 252 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~ 329 (615)
T TIGR00990 252 ETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK 329 (615)
T ss_pred hcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh
Confidence 2211 22223332222 21111111111111111111111111111100 12367899999999988764 3443
Q ss_pred -hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 472 -RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 472 -~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
...+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|...|+... ..+...|..+...
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555566677899999999999888764 2345577788888999999999999999776 3467889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCh
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 625 (844)
+...|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|++..+ ..|+ ...|..+..+|...|++
T Consensus 409 ~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCH
Confidence 9999999999999999999 67876 5677788889999999999999999987 3455 67888999999999999
Q ss_pred HHHHHHHHhC-CCCCCh-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 003148 626 GEALDLIKSM-PVEPND-VI-------WGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~-~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
++|++.|++. .+.|+. .+ ++..+..+...|++++|+..++++++++|++...+..++.+|.+.|++++|.+
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999986 444431 11 12222233446999999999999999999998899999999999999999999
Q ss_pred HHHHHHhC
Q 003148 697 VRLQMKEQ 704 (844)
Q Consensus 697 ~~~~m~~~ 704 (844)
.+++..+.
T Consensus 564 ~~e~A~~l 571 (615)
T TIGR00990 564 LFERAAEL 571 (615)
T ss_pred HHHHHHHH
Confidence 99988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=183.92 Aligned_cols=298 Identities=13% Similarity=0.111 Sum_probs=171.2
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCc---chhHHHHHHHHHHhcCCHH
Q 003148 215 ARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKA---NALMVNALVDMYMKCGAVD 291 (844)
Q Consensus 215 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~ 291 (844)
...|++++|+..|.++.+.+. .+..++..+...+...|+++.|..+++.+++.+..+ ...++..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344555555555555554321 122234444444455555555555555554432111 1245677888888888888
Q ss_pred HHHHHHHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 003148 292 TAKQLFGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLR 368 (844)
Q Consensus 292 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 368 (844)
+|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..+....
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------------- 178 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------------- 178 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------------
Confidence 88888888865 3556788888888888999999988888877543322110
Q ss_pred hCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccccccccccc
Q 003148 369 NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLT 448 (844)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 448 (844)
....+..+...|.+.|++++|...|+++.+.+. .+...+..+...|.
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----------------------------~~~~~~~~la~~~~ 225 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAADP----------------------------QCVRASILLGDLAL 225 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc----------------------------CCHHHHHHHHHHHH
Confidence 011234566677778888888888877654110 12233444555555
Q ss_pred ccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQ 528 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 528 (844)
+.|++++|+++|+++...+......++..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHH
Confidence 666666666666666543211112234444445555555555555555544432 333344556666666666666666
Q ss_pred HHHhcC--CCCHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChh
Q 003148 529 VFRRME--KRDVSAWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSI 574 (844)
Q Consensus 529 ~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 574 (844)
+|+++. .|+...++.++..+.. +|+.++++.++++|.+.+++|+..
T Consensus 304 ~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 304 LLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666554 3555666666655543 446666666666666666555554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-18 Score=185.54 Aligned_cols=291 Identities=14% Similarity=0.154 Sum_probs=199.9
Q ss_pred HHHHHcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHH
Q 003148 383 DMYMKCGKQEMACRIFDHMSNK---TVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 383 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 459 (844)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~--------------------------- 95 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL--------------------------- 95 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------------------
Confidence 3455667777777777777642 2234455555555555555555555444
Q ss_pred HHHHHhCCcccC---hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC
Q 003148 460 FRVMLSERIKVD---RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR 536 (844)
Q Consensus 460 ~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 536 (844)
...+..++ ...+..+...+...|+++.|..++..+.+.. +.+...++.++.+|.+.|++++|.+.|+.+.+.
T Consensus 96 ----l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 96 ----LSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred ----hcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 33211111 1223334444444555555555555544432 234556667777777777777777777776532
Q ss_pred C--------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 537 D--------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 537 ~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
+ ...|..+...+.+.|+.++|+..|+++.+ ..|+. ..+..+...+.+.|++++|.++++++.+ ..|
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p 245 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDP 245 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCh
Confidence 1 12355677778888999999999999887 45654 5677777888889999999999999886 234
Q ss_pred C--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 608 Q--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 608 ~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|+.++|...++++++..|++.. +..+...
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~ 324 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDY 324 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHH
Confidence 4 456778889999999999999999987 56677777788888899999999999999999999998764 4444444
Q ss_pred HHH---cCCchHHHHHHHHHHhCCCccCCc
Q 003148 685 YAS---AGKWTNVARVRLQMKEQGIRKLPG 711 (844)
Q Consensus 685 ~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 711 (844)
+.. .|+.+++..+++.|.+++++++|.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 432 568999999999999988888887
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-15 Score=165.09 Aligned_cols=584 Identities=14% Similarity=0.085 Sum_probs=321.8
Q ss_pred hhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCC--chHHHHHHHHHHhCCCCCCcccHHHHHHHHh--cCCChHHHH
Q 003148 83 LTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGL--GVEAISLYVELAGFGILPDKFTFPFVLNACT--KSSAFGEGV 158 (844)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~ 158 (844)
...|..+|+.+-+-.|-.+........ .|...|. .+.|...|....+.. |+ .....+.+||. ..+++..+.
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~s--p~-Nil~LlGkA~i~ynkkdY~~al 184 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQS--PD-NILALLGKARIAYNKKDYRGAL 184 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhC--Cc-chHHHHHHHHHHhccccHHHHH
Confidence 456777787443223322222222221 2333343 488999998887753 22 23455677776 456899999
Q ss_pred HHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHH------hCCCchHHHHHHHHH
Q 003148 159 QVHGAIVKMG--FDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACA------RRDLPKEAVYLFFEM 230 (844)
Q Consensus 159 ~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m 230 (844)
.+|..++... ..+|+.+.. -..+.++|+.+.|+..|....+-|+..-++++.-.. ....+..++.++...
T Consensus 185 ~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 185 KYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 9999977653 556766543 356779999999999999988766655555543221 122344555555554
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCc--chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C-
Q 003148 231 VEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKA--NALMVNALVDMYMKCGAVDTAKQLFGECKDR---N- 304 (844)
Q Consensus 231 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~- 304 (844)
-... .-|++..+.|.+.+...|++..+..+...+....... -...|--+..+|-..|+++.|...|.+..+. +
T Consensus 263 y~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~ 341 (1018)
T KOG2002|consen 263 YKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF 341 (1018)
T ss_pred Hhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc
Confidence 4332 2366677778888888889998888888887764221 1234666788888888999998888776542 2
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHhhcC----ChhhHHHHHHHHHHhCCCchhhHHH
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDR-VTMLSAVSASAQLG----DLLCGRMCHGYVLRNGLEGWDSICN 379 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~ 379 (844)
+..+--+...|...|+.+++...|...... .||. .|...+-..|+..+ ..+.|..+.+...+.- ..|...|-
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l 418 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWL 418 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 344556777888888888888888888775 3444 44444444444443 2344444444444432 33555566
Q ss_pred HHHHHHHHcCCH------HHHHHHHhhcC-CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC-------Ccc------c
Q 003148 380 TMIDMYMKCGKQ------EMACRIFDHMS-NKTVVSWNSLIAGLIKNGDVESAREVFSEMPGR-------DHI------S 439 (844)
Q Consensus 380 ~Li~~y~~~g~~------~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~------~ 439 (844)
.+..+|....-. ..|..++..-. ...+...|.+...+...|++++|...|.+.... |.. +
T Consensus 419 ~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 666666554332 22332222221 234456666666677777777777666655432 110 0
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHc-cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASAC-GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA 518 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (844)
-..+...+-..++++.|.+.|...... .|..++-..=+.+. -..+.+.++...+..+.... ..++.+++-+.+.|.
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHH
Confidence 111223334445555666666555543 34333211111111 12234444544444444322 234444444555555
Q ss_pred hcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 003148 519 RCGDPQRAMQVFRRME-----KRDVSAWTAAIGAMAM------------EGNGEQAVELFNEMLRQGIKPDS-IVFVGVL 580 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 580 (844)
+...+.-|.+-|..+. .+|..+.-+|...|.+ .+..++|+++|.+.++ ..|-. ..-+.+.
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIG 653 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchh
Confidence 5555555555444333 1233343344443322 1234555555555555 34432 4445555
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----CCCCChHHHHHHHHHHHhcCC
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPNDVIWGSLLAACQKHQN 656 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~ 656 (844)
-.++..|++.+|+.+|.+..+.. .....+|-.+.+.|..+|++-.|++.|+.. .-+.+..+.+-|..++...|.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 55556666666666666665521 122344555566666666666666666544 112244455555556666666
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
+.+|.+.+..++.+.|.++..-..++-+
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 6666666666666666665544444433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-15 Score=163.13 Aligned_cols=592 Identities=14% Similarity=0.086 Sum_probs=404.6
Q ss_pred hhHHHHhhCccccCCCCCCCcccHHHHHHHH--HcCCCchHHHHHHHHHHhC--CCCCCcccHHHHHHHHhcCCChHHHH
Q 003148 83 LTYAQKAFDYYIKDNETSATLFMYNSLIRGY--SCIGLGVEAISLYVELAGF--GILPDKFTFPFVLNACTKSSAFGEGV 158 (844)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~ 158 (844)
+++|.+.|...++. .++|+.. .+..++ ...+++..|+.+|...... ..+||... .+-.++.+.++.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~--sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 57888888877632 3345432 233343 4568999999999996653 34555543 2335567889999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhcC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 003148 159 QVHGAIVKMGFDRDVFVENCLINFYGECG---DIVDGRRVFDEMS---ERNVVSWTSLICACARRDLPKEAVYLFFEMVE 232 (844)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 232 (844)
..|.++.+.. +.++.++-.|--+-.... .+..+..++...- ..|++..+.|-.-|.-.|+++.++.+...+..
T Consensus 220 ~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9999998765 223333333322222222 3344555554332 35888999999999999999999999999877
Q ss_pred cCCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ccee
Q 003148 233 EGIK--PNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVL 307 (844)
Q Consensus 233 ~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~ 307 (844)
.... .-...|-.+-+++-..|+++.|.+.+-...+..-..-+..+-.|..+|.+.|+++.|...|+.+... +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 5311 1233477788888899999999999988877643322455667899999999999999999998653 4456
Q ss_pred hHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHH----HHHhCCCchhhHHH
Q 003148 308 CNTIMSNYVRLG----LAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGY----VLRNGLEGWDSICN 379 (844)
Q Consensus 308 ~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~ 379 (844)
...+...|...+ ..+.|..++.+..+.- ..|...|..+-..+ ..++.......+.. +...+-.+.+.+.|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL-EQTDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 666666676665 4566666666665542 22444554444443 33444444544443 34556668888999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC-------CCc------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccccccccc
Q 003148 380 TMIDMYMKCGKQEMACRIFDHMSN-------KTV------VSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGG 446 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 446 (844)
.+...+...|+++.|...|+.... +|. .+--.+...+-..++.+.|.+.+..+....+ ..|.+
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp----~YId~ 532 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP----GYIDA 532 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc----hhHHH
Confidence 999999999999999999987653 222 1222344555666789999999988876432 23444
Q ss_pred cccc-------CChHHHHHHHHHHHhC-CcccChhhHHhHHHHccccCchHHHHHHHHHHHHhC-CCCchhHHhHHhhhH
Q 003148 447 LTQE-------NMFEEAMELFRVMLSE-RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNG-IHCDMQLATALVDMF 517 (844)
Q Consensus 447 ~~~~-------g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y 517 (844)
|.+. +...+|..++.+.... .-.|+..+| +-..+.....+..|..-+..+.+.- ..+|++..-+|.+.|
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 4444 5677888888887663 345555444 2223444455666666555554432 235777777777765
Q ss_pred Hh------------cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003148 518 AR------------CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA 582 (844)
Q Consensus 518 ~k------------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 582 (844)
.. .+..+.|.++|..+. .+|...-|-+...++..|++.+|..+|.+..+... -+..+|..+...
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHC 689 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHH
Confidence 42 345788999999877 34666777788899999999999999999999643 345678899999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHH--HHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVI--WGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~--~~~ll~~~~~~g~~~~ 659 (844)
|...|++-.|+++|+...+++.-.-+.....+|..++.++|++.+|.+..... ...|...+ +|.. ..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a----------~v 759 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA----------LV 759 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH----------HH
Confidence 99999999999999999887876777889999999999999999999988776 45553332 2211 12
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
..+..+.+++..+. .+=.+....+..++|.++|..|.+.+-
T Consensus 760 ~kkla~s~lr~~k~------t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 760 LKKLAESILRLEKR------TLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23344455555551 223345566788999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-15 Score=178.53 Aligned_cols=185 Identities=9% Similarity=0.052 Sum_probs=134.7
Q ss_pred HhcCCHHHHHHHHHhcCCCC--Hh--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCc
Q 003148 518 ARCGDPQRAMQVFRRMEKRD--VS--AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-----IVFVGVLTACSHGGL 588 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~ 588 (844)
...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.+. .|.. .....+..++...|+
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhccc
Confidence 34577777777777766331 11 1111455677778888888888877663 3322 334555556777888
Q ss_pred HHHHHHHHHHhHhhcC----------CCCC---cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 589 VNQGWHLFRSMTDIHG----------VSPQ---IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
+++|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++ ...| +...|..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 8888888887766211 0122 123456778888999999999999987 4455 46688888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|+.++|+..++++++++|+++..+..++.++...|+|++|.++++.+.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-16 Score=178.66 Aligned_cols=353 Identities=13% Similarity=0.020 Sum_probs=223.5
Q ss_pred hcCCHHHHHHHHHhcCCC------CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhH
Q 003148 286 KCGAVDTAKQLFGECKDR------NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCG 359 (844)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 359 (844)
|..+++.-.-+|..-+++ +..-...++..+.+.|++++|+.++...+.....+... +..++.+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHH
Confidence 344444444445444431 22234445666777788888888877777654333222 22222333345555555
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 003148 360 RMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHIS 439 (844)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 439 (844)
...+..+++... .+...+..+...|.+.|++++|...|++...-+ ..+...
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNSQI 146 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHH
Confidence 555555544321 123344455555556666666666555554310 013334
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 519 (844)
|..+...+...|++++|...++++... .|+.......+..+...|++++|...+..+.+....++......+...+.+
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555556666666666666655443 222222111122345556666666666665554333333344445667778
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQ----AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQ 591 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 591 (844)
.|++++|...|+... ..+...+..+...|.+.|++++ |+..|++.++ ..|+. ..+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888888766 3356778888888888898885 7899999988 67776 577888888999999999
Q ss_pred HHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGS-LLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
|..++++..+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|...+++++
T Consensus 303 A~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999887 4565 456677888999999999999999887 45676544443 4567888999999999999999
Q ss_pred hcCCCCC
Q 003148 669 ELDPEKS 675 (844)
Q Consensus 669 ~~~p~~~ 675 (844)
+.+|++.
T Consensus 380 ~~~P~~~ 386 (656)
T PRK15174 380 QARASHL 386 (656)
T ss_pred HhChhhc
Confidence 9999864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-15 Score=173.64 Aligned_cols=250 Identities=14% Similarity=0.061 Sum_probs=181.1
Q ss_pred cccccccccccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhh
Q 003148 438 ISWNTMLGGLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDM 516 (844)
Q Consensus 438 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (844)
..|+.+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...+..+++.. +.+..++..+...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34555555566666666666666666543 343 2345555555666677777777777666553 3356777888889
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 592 (844)
|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHH
Confidence 999999999999998876 33567788888999999999999999999988 56765 6788888899999999999
Q ss_pred HHHHHHhHhhcCCCCCc-ch-------HHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQI-VH-------YGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~-~~-------~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~ 662 (844)
+..|++..+ +.|+. .. ++.....+...|++++|.+++++. ...|+. ..|..+...+...|++++|..
T Consensus 487 ~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 487 IEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999887 44431 11 112223344579999999999986 666754 478889999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 663 AAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 663 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.+++++++.+..... .....|.+|.++....++
T Consensus 564 ~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 564 LFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 999999988764331 123345566666555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=175.27 Aligned_cols=312 Identities=9% Similarity=0.011 Sum_probs=238.4
Q ss_pred HHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAME 458 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 458 (844)
..+.|+.++|..+++.... .+...+..++.+....|++++|...|+++.. .+...|..+...+.+.|++++|+.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555555544432 1233344444444555555555555555543 245567777888889999999999
Q ss_pred HHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC-
Q 003148 459 LFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR- 536 (844)
Q Consensus 459 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~- 536 (844)
.|+++... .|+ ...+..+..++...|+.++|...+..+......+.. .+..+. .+.+.|++++|...++.+.+.
T Consensus 132 ~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~-~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 132 LAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCL-SFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHH-HHHHcCCHHHHHHHHHHHHhcC
Confidence 99998764 554 456667778889999999999999988776544333 333333 478899999999999987643
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHH----HHHHHHHhHhhcCCCCC
Q 003148 537 ---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQ----GWHLFRSMTDIHGVSPQ 608 (844)
Q Consensus 537 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~ 608 (844)
+...+..+...+...|++++|+..|+++.+ ..|+. ..+..+..++...|++++ |...|+++.+ +.|+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~ 282 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSD 282 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCC
Confidence 233445566788899999999999999998 56765 567788889999999986 8999999987 5566
Q ss_pred -cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 609 -IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 609 -~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
...+..+..+|.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++++.+|+++..+..++.++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 678889999999999999999999988 55665 557788888999999999999999999999999887777789999
Q ss_pred HHcCCchHHHHHHHHHHhCC
Q 003148 686 ASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 686 ~~~g~~~~a~~~~~~m~~~~ 705 (844)
...|++++|.+.++...+..
T Consensus 363 ~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-13 Score=154.44 Aligned_cols=431 Identities=11% Similarity=0.079 Sum_probs=203.5
Q ss_pred HhcCChHHHHHHHhhcCCCCcc---cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHH---HHHHHhcCCchH
Q 003148 184 GECGDIVDGRRVFDEMSERNVV---SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCV---ISACAKLQNLEL 257 (844)
Q Consensus 184 ~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~a~~~~~~~~~ 257 (844)
.+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555544432111 12244444444455555555555444 2222211111 223334455555
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHH--cCChHHHHHHHHHHHhcC
Q 003148 258 GDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVR--LGLAREALAILDEMLLHG 335 (844)
Q Consensus 258 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g 335 (844)
|.++++.+.+.. +.+..++..|+..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+.
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~- 198 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL- 198 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh-
Confidence 555555555443 22355556777788888888888888888876544333334444444 45555588888888876
Q ss_pred CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC-CCcchHHHHHH
Q 003148 336 PRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN-KTVVSWNSLIA 414 (844)
Q Consensus 336 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~ 414 (844)
.|+...+ +..++....+.|-...|.++...-++ -+...+.-+
T Consensus 199 -~P~n~e~----------------------------------~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-- 241 (822)
T PRK14574 199 -APTSEEV----------------------------------LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-- 241 (822)
T ss_pred -CCCCHHH----------------------------------HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--
Confidence 3443222 23333444444444444444444332 000000000
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCccccccccccccccCCh---HHHHHHHHHHHhC-CcccCh-hhH----HhHHHHcccc
Q 003148 415 GLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMF---EEAMELFRVMLSE-RIKVDR-VTM----VGVASACGYL 485 (844)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~p~~-~t~----~~ll~a~~~~ 485 (844)
+.+.|.+..+....+ .-...+++ +.|+.-++.+... +-.|.. .-+ .--+-++...
T Consensus 242 ------~~~~~a~~vr~a~~~----------~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 242 ------ERDAAAEQVRMAVLP----------TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred ------HHHHHHHHHhhcccc----------cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 000111111000000 00011222 4444444444431 111221 111 1122233334
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEML 565 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 565 (844)
++..++...++.+...+.+....+--+ ..++|...+++++|+.+|+++.
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a-------------------------------~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRW-------------------------------AASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHh
Confidence 444444444444444443323333344 4455555555555555555554
Q ss_pred HCCC----CCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcC------------CCCC-cchHHHHHHHHHhcCChHH
Q 003148 566 RQGI----KPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHG------------VSPQ-IVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 566 ~~g~----~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~g~~~e 627 (844)
.... .|+. .....|.-++..++++++|..+++.+.+... -.|| ...+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 3210 1111 2234455555555555555555555544100 0111 2233345555666677777
Q ss_pred HHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 628 ALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 628 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++.++++ ...| |...+..+...+...|+..+|+..++.+..++|++......++.++...|+|++|.++.+...+.
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77776666 3334 45566666666666777777777776666667776666666666666777777776666655543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=162.41 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=62.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHh
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQK 653 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~ 653 (844)
..+...+...|+.++|++.++++.. ..|+ ...+..+..++...|+.++|++.+++. ...|| ...+..+......
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 3444556666666777766666655 2333 455666666777777777777777766 45564 3455555556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCch
Q 003148 654 HQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
.|++++|+..++++++..|+++.+
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777777777777777777543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-13 Score=138.01 Aligned_cols=339 Identities=14% Similarity=0.125 Sum_probs=222.4
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh--cCCChH-HHHHHHHHHHHhCCCCChhHHHH
Q 003148 102 TLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACT--KSSAFG-EGVQVHGAIVKMGFDRDVFVENC 178 (844)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~ 178 (844)
.+++=|.|+.. ..+|...++.-+|++|...|+..+...-..+++..+ ...++. .-.+.|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 34566666654 456889999999999999998877766555554333 222222 2234444555555 3333343
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHH
Q 003148 179 LINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELG 258 (844)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 258 (844)
|.|++.+ -+|+..| +...++.+||.|+++-...+.|.+++++-.....+.+..+||.+|.+-+-. .+
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 4565554 4455444 566789999999999999999999999999998999999999999886533 34
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003148 259 DRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRP 338 (844)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 338 (844)
+++..+|+...+.||..|+|+++.+.++.|+++.|++. |++++.+|.+-|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCc
Confidence 89999999999999999999999999999999988765 455666666666666
Q ss_pred ChhhHHHHHHHHhhcCChhh-HHHHHHHHHHh----CCC----chhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchH
Q 003148 339 DRVTMLSAVSASAQLGDLLC-GRMCHGYVLRN----GLE----GWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSW 409 (844)
Q Consensus 339 ~~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~~----g~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~ 409 (844)
.-.+|..+|..+.+.++... +..+...+... .+. .|...+..-++.+.+..+.+-|.++-.-....+
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---- 386 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---- 386 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC----
Confidence 66666666666665555432 22222222211 111 122333333444444444444444433322100
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 410 NSLIAGLIKNGDVESAREVFSEMPG--RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
++ ..|.. ....-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.
T Consensus 387 -----------N~-------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~ 448 (625)
T KOG4422|consen 387 -----------NW-------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR 448 (625)
T ss_pred -----------ch-------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc
Confidence 00 00000 01122333444556666677778888888877788888999999999988899
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 003148 488 LDLAKWIYAYIEKNGIHCD 506 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~ 506 (844)
++...+++..++..|....
T Consensus 449 ~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 449 LEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred chhHHHHHHHHHHhhhhhh
Confidence 9998888888888774433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-11 Score=125.41 Aligned_cols=606 Identities=14% Similarity=0.101 Sum_probs=436.7
Q ss_pred CCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHH
Q 003148 79 TFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGV 158 (844)
Q Consensus 79 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 158 (844)
+..++..|+.++..+. +..+.+...|-+-.+.--..|.+..|..+..+=-+. .+-+.-.| |.++ +....+.|+
T Consensus 263 dl~DikKaR~llKSvr--etnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Leai-RLhp~d~aK 335 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVR--ETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEAI-RLHPPDVAK 335 (913)
T ss_pred cHHHHHHHHHHHHHHH--hcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHHH-hcCChHHHH
Confidence 3445788999988776 444556666766555555666666666554332221 11122222 3332 344456677
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 003148 159 QVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE--R-NVVSWTSLICACARRDLPKEAVYLFFEMVEEGI 235 (844)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (844)
.+....++.- +.++..|-.-.+. ..+...-.+++.+..+ | ++..|-.. +.-...+.|.-++.+..+.
T Consensus 336 ~vvA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAvec-- 405 (913)
T KOG0495|consen 336 TVVANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVEC-- 405 (913)
T ss_pred HHHHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHh--
Confidence 7777776653 3344444322221 1223333445544432 3 34445443 3445566677777777653
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----Ccee
Q 003148 236 KPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD----R----NLVL 307 (844)
Q Consensus 236 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~----~~~~ 307 (844)
-|. -.-|.-|+++...++.|+.++....+. ++.+..+|.+-...--..|+.+...++.++-.. . |...
T Consensus 406 cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 406 CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 222 234556777778888888888877664 456777777666666777888887777765321 1 2233
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHH
Q 003148 308 CNTIMSNYVRLGLAREALAILDEMLLHGPRPD--RVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMY 385 (844)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 385 (844)
|-.=...+-..|..--+..+....+.-|+.-. ..|+...-..|.+.+.++.++.++...++. ++.+..+|...+..-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHH
Confidence 55555566666666666667777766666433 358888889999999999999999998876 455677888888888
Q ss_pred HHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccccccccccccCChHHHHHH
Q 003148 386 MKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 386 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 459 (844)
-..|..++-..+|++... +..+.|-.....+...|++..|..++....+. +...|-+-+..-..+.++++|..+
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 889999999999998875 35567888888899999999999998877653 456788888888999999999999
Q ss_pred HHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-
Q 003148 460 FRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK--R- 536 (844)
Q Consensus 460 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~- 536 (844)
|.+.... .|+...|.--...--.++..++|.++++..++. ++.-...|-.+.+.|-+.++++.|.+.|..-.+ |
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 9998764 566555554444445578899999999888876 344567888889999999999999999987663 3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
.+..|-.|...--+.|..-+|..++++..- -.|+. ..|...+..=.+.|+.++|.....++.+ ..+.+...|.--
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEa 793 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEA 793 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHH
Confidence 466898888888889999999999999987 35654 7788999999999999999999998887 355557789999
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
|.+..+.++-..+.+.+++.. .|+.+.-+....+....+++.|...|++++..+|++..+|..+-..+...|.-++-.
T Consensus 794 I~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred HHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 999999999888888888874 355666677777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCcccEEEE
Q 003148 696 RVRLQMKEQGIRKLPGSSSIEV 717 (844)
Q Consensus 696 ~~~~~m~~~~~~~~~~~s~~~~ 717 (844)
+++++..... +.-|..|+-+
T Consensus 872 ev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 872 EVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHhccC--CCCCcHHHHH
Confidence 9998877643 3345566543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-11 Score=132.69 Aligned_cols=614 Identities=12% Similarity=0.065 Sum_probs=353.1
Q ss_pred HHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 003148 73 TCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSS 152 (844)
Q Consensus 73 ~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 152 (844)
.+++ |+ ++.|.+++..++ ...+.+...|..|-..|-+.|+.++++..+-..-.. .+-|..-|..+-.-..+.|
T Consensus 149 lfar-g~---~eeA~~i~~EvI--kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 149 LFAR-GD---LEEAEEILMEVI--KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHh-CC---HHHHHHHHHHHH--HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcc
Confidence 3444 88 899999998777 445677888999999999999988888765444332 2334456777777778888
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCc-ccH-------HHHHHHHHhCCCchHHH
Q 003148 153 AFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNV-VSW-------TSLICACARRDLPKEAV 224 (844)
Q Consensus 153 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-~~~-------~~li~~~~~~g~~~~A~ 224 (844)
++++|.-.+.++++.. +++....---..+|-+.|+...|..-|.++-+.+. +.| -.++..|...+..+.|+
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8999999999998886 55555555566788888999888888877654222 111 22345566666667788
Q ss_pred HHHHHHHHc-CCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHh---------------------------CCCcchhH
Q 003148 225 YLFFEMVEE-GIKPNSVTMVCVISACAKLQNLELGDRVCAYIDEL---------------------------GMKANALM 276 (844)
Q Consensus 225 ~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~ 276 (844)
+.+...... +-..+..+++.++..+.+...++.+....-.+... ++.++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 877776652 22334445666666666666666665554444431 12222223
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhcCC----CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 003148 277 -VNALVDMYMKCGAVDTAKQLFGECKD----RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 277 -~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
...+--...+.+...+++.-|-.... -++..|.-+..+|.+.|++.+|+.+|..+.....--+.+.|..+-.++-
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 11111122233344444433322221 1334567777888888888888888888877655555667777777777
Q ss_pred hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcc------------hHHHHHHHHHhc
Q 003148 352 QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVV------------SWNSLIAGLIKN 419 (844)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~------------~~~~li~~~~~~ 419 (844)
..+..+.|.+.+..++... +.+..+.-.|...|-+.|+.++|.+++..+..||.. ..-...+.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 8888888888888877653 223444557777888888888888888887766521 112224556666
Q ss_pred CCHHHHHHHHhhCCCC--------------------------CccccccccccccccCChHHHHH------HHHHHHhCC
Q 003148 420 GDVESAREVFSEMPGR--------------------------DHISWNTMLGGLTQENMFEEAME------LFRVMLSER 467 (844)
Q Consensus 420 g~~~~A~~~~~~m~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~------l~~~m~~~g 467 (844)
|+.++=..+-..|..+ ....-...+.+-.+.++.....+ .+..-...|
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 6666533333222210 00000111111111111110000 000011112
Q ss_pred cccCh--hhHHhHHHHccccCchHHHHHHHHHHHHhCC--CCch---hHHhHHhhhHHhcCCHHHHHHHHHhcCCC----
Q 003148 468 IKVDR--VTMVGVASACGYLGALDLAKWIYAYIEKNGI--HCDM---QLATALVDMFARCGDPQRAMQVFRRMEKR---- 536 (844)
Q Consensus 468 ~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~---~~~~~li~~y~k~g~~~~A~~~~~~~~~~---- 536 (844)
+.-+. .-+.-++.+.++.+.+++|..+...+..... .++. ..-...+.+....+++..|...++.|...
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 22211 1233344555666777777776655544321 1111 22334445555667777777777766533
Q ss_pred -C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH--HHHhccCcHHHHHHHHHHhHhhcCCCCCcc
Q 003148 537 -D---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVL--TACSHGGLVNQGWHLFRSMTDIHGVSPQIV 610 (844)
Q Consensus 537 -~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 610 (844)
+ ...||...+.+.++|+-.--..++..... ..|+......++ .-....+.+..|.+++-.... ..|+..
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~P 774 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSP 774 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCc
Confidence 2 24566666666665554444444444333 233331111111 123345677777777666655 557644
Q ss_pred hHH-HHHHHHH----------hcCChHHHHHHHHhC-CC-CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 611 HYG-CMVDLLG----------RAGLLGEALDLIKSM-PV-EP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 611 ~~~-~li~~~~----------~~g~~~eA~~~~~~m-~~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.++ ||.-++. |.-..-.+..++++- .. .+ -..++..+..+|..-|=+..|...++++++..|.+.
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~ 854 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV 854 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence 443 3332221 111233445555443 11 12 344666788899999999999999999999866432
Q ss_pred ------------chHHHHHHHHHHcCCchHHHHHHHH
Q 003148 676 ------------GVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 676 ------------~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
.+-..|.-+|-+.|+..-|.++.++
T Consensus 855 ~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 855 TDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 1334677789999999998888754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-12 Score=146.39 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=152.9
Q ss_pred cccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCC-----CCchhHHhHHhhh
Q 003148 442 TMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGI-----HCDMQLATALVDM 516 (844)
Q Consensus 442 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~~~~~~~~~li~~ 516 (844)
-.+.++...|++.++++.|+.|...|.+....+-..+..++...+.+++|..++..+..... .++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 35567888999999999999999988765556788889999999999999999988866431 2233334556666
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHH
Q 003148 517 FARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 595 (844)
|...+++++|..+++.+.+..+ |. +.-+ |... ....||-.. +..+...+...|++.+|.+.
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p--~~--~~~~---~~~~-----------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTP--YQ--VGVY---GLPG-----------KEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCC--cE--Eecc---CCCC-----------CCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666666543111 10 0000 0000 012333333 34455567888999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
++.+.. ..|. ......+.+++...|+..+|++.++.+ ...|+. .+...+..+....|++.+|....+.+++..|
T Consensus 439 le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999977 4454 778888999999999999999999776 566754 4666677777888999999999999999999
Q ss_pred CCCch
Q 003148 673 EKSGV 677 (844)
Q Consensus 673 ~~~~~ 677 (844)
+++..
T Consensus 516 e~~~~ 520 (822)
T PRK14574 516 EDIPS 520 (822)
T ss_pred CchhH
Confidence 98743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-13 Score=131.54 Aligned_cols=248 Identities=16% Similarity=0.170 Sum_probs=184.3
Q ss_pred CCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 003148 98 ETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN 177 (844)
Q Consensus 98 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 177 (844)
..+++..+|.+||.++++-...+.|.++|++-.....+.+..+||.+|.+-+ +..++.+..+|+...+.||.+++|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHH
Confidence 3446778999999999999999999999999999888999999999998764 455689999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHh----hcC----CCCcccHHHHHHHHHhCCCchH-HHHHHHHHHHc----CCCC----Ccc
Q 003148 178 CLINFYGECGDIVDGRRVFD----EMS----ERNVVSWTSLICACARRDLPKE-AVYLFFEMVEE----GIKP----NSV 240 (844)
Q Consensus 178 ~Li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~p----d~~ 240 (844)
++++..++.|+++.|++.+- +|. +|...+|..+|.-+.+.++..+ |..++.+.... .++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999999988876553 443 4788888888888888877754 44444444432 2333 445
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHH
Q 003148 241 TMVCVISACAKLQNLELGDRVCAYIDELG----MKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYV 316 (844)
Q Consensus 241 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 316 (844)
.|.+.+..|.+..+.+.|.++++.+.... +.|+. + ...-|..+....+
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-----------------------~-----~~fYyr~~~~lic 409 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-----------------------H-----RNFYYRKFFDLIC 409 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------------H-----HHHHHHHHHHHHH
Confidence 57778888888888888888887665421 11110 0 0112334555566
Q ss_pred HcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhH
Q 003148 317 RLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSI 377 (844)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 377 (844)
+....+.-+.+|..|.-.-+-|+..+...++++....+.++...+++..++..|......+
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6667777788888887777778888888888888888888888888887777765443333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-11 Score=129.74 Aligned_cols=534 Identities=12% Similarity=0.100 Sum_probs=327.5
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCCchHHHHHHH
Q 003148 152 SAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEM---SERNVVSWTSLICACARRDLPKEAVYLFF 228 (844)
Q Consensus 152 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 228 (844)
|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 67777777777777665 455566667777777777777766654322 22345566666666667777777777777
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHH----HHHHHHhcCCHHHHHHHHHhcCC--
Q 003148 229 EMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNA----LVDMYMKCGAVDTAKQLFGECKD-- 302 (844)
Q Consensus 229 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~m~~-- 302 (844)
+.++.. +++...+--=...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 766542 12222222333445566777777766666666543223222222 33445555666777777766554
Q ss_pred C---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhh----------------------H----HHHHHHHhhc
Q 003148 303 R---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVT----------------------M----LSAVSASAQL 353 (844)
Q Consensus 303 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------------------~----~~ll~~~~~~ 353 (844)
. +...+|.++..|.+...++.|......+.....++|..- | .-+.-+..+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2 334577888888888888888887777766222222211 1 1222233455
Q ss_pred CChhhHHHHHHHHHHhC--CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHH
Q 003148 354 GDLLCGRMCHGYVLRNG--LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN----KTVVSWNSLIAGLIKNGDVESARE 427 (844)
Q Consensus 354 ~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~ 427 (844)
...+....+.....+.. ...++..+.-+.++|...|.+.+|.++|..+.. .+...|-.+...|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 66666666666676666 455677889999999999999999999999876 366789999999999999999999
Q ss_pred HHhhCCCCCcccc---ccccccccccCChHHHHHHHHHHHh--------CCcccChhhHHhHHHHccccCchHHHHHHHH
Q 003148 428 VFSEMPGRDHISW---NTMLGGLTQENMFEEAMELFRVMLS--------ERIKVDRVTMVGVASACGYLGALDLAKWIYA 496 (844)
Q Consensus 428 ~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 496 (844)
.|+....-++... .+|-..|.+.|+.++|++.+..+.. .+..|+..........+...|+.++=..+-.
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9998876444433 3455678899999999999988642 2233444333344444555566555333322
Q ss_pred HHHHhC----------------------CCCchhHHhHHhhhHHhcCCHHHHHHHHH--------hcCCCCHhHH----H
Q 003148 497 YIEKNG----------------------IHCDMQLATALVDMFARCGDPQRAMQVFR--------RMEKRDVSAW----T 542 (844)
Q Consensus 497 ~~~~~g----------------------~~~~~~~~~~li~~y~k~g~~~~A~~~~~--------~~~~~~~~~~----~ 542 (844)
.++... ..........++.+-.+.++.....+-.. ....-...-| .
T Consensus 551 ~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~ 630 (895)
T KOG2076|consen 551 TLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFR 630 (895)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHH
Confidence 222110 01111122223333333333222211111 1111123334 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCh-h-HH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHH
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGI--KPDS-I-VF-VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGC 614 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ 614 (844)
-++..+++.++.++|+.+...+.+.-. .++. . .+ ...+.++...+++.+|..+++.|...++...+ ...|++
T Consensus 631 e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~ 710 (895)
T KOG2076|consen 631 ELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNL 710 (895)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 457788899999999999998887542 2222 1 23 34455677899999999999999886444433 456776
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAA--CQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
....+.+.|+-.--..++... ..+|+......++.+ ....+.+.-|...+-++....|++|.+..+|+-++.+
T Consensus 711 ~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 711 DFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 667777777655555555554 333333222222222 3456677789999999999999999888888777644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-13 Score=134.77 Aligned_cols=451 Identities=16% Similarity=0.197 Sum_probs=283.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH-HHHHHHhcCCchHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHh
Q 003148 212 CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVC-VISACAKLQNLELGDRVCAYIDELGMKAN----ALMVNALVDMYMK 286 (844)
Q Consensus 212 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~~ 286 (844)
.-|.-+....+|+..|+-.++...-||.-.... +-..+.+.+.+..|.+.+...+..-...+ ..+.+.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 445556666777777777766666665543321 11223444555666666665554422111 2233444445667
Q ss_pred cCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHH
Q 003148 287 CGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHG 364 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 364 (844)
.|.+++|+.-|+...+ ||..+--.|+-++.--|+.++..+.|.+|..-...||..-|.
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------------------- 348 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------------------- 348 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc--------------------
Confidence 7778888877776543 555543334444445677777777777777655555544331
Q ss_pred HHHHhCCCchhhHHHH-----HHHHHHHcCC--HHHHH----HHHhhcCCCCcc---hHH----------H--------H
Q 003148 365 YVLRNGLEGWDSICNT-----MIDMYMKCGK--QEMAC----RIFDHMSNKTVV---SWN----------S--------L 412 (844)
Q Consensus 365 ~~~~~g~~~~~~~~~~-----Li~~y~~~g~--~~~A~----~~f~~m~~~~~~---~~~----------~--------l 412 (844)
+..-.|+....|. .+.-..+... .++++ +++.-...|+.. -|. . -
T Consensus 349 ---~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~k 425 (840)
T KOG2003|consen 349 ---KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINK 425 (840)
T ss_pred ---CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence 0111122222111 1111111111 11111 122222222221 011 0 1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccccccc-----ccccc-CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccC
Q 003148 413 IAGLIKNGDVESAREVFSEMPGRDHISWNTMLG-----GLTQE-NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLG 486 (844)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~-----~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 486 (844)
..-|.++|+++.|.+++.-...+|..+-.+-.. -|.+- .++.+|.+.-+...... +-|......--......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 235789999999999988777665443222111 12222 34556655555443221 111111111112233468
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 003148 487 ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNE 563 (844)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 563 (844)
+++.|.+.+.+.....-......||. .-.|-+.|++++|+..|-.+. ..++...-.+.+.|....+..+|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999887665444555553 334778999999999998765 55677777788889999999999999988
Q ss_pred HHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh
Q 003148 564 MLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND 641 (844)
Q Consensus 564 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~ 641 (844)
... +.|+. ..+.-|...|-+.|+-.+|.+++-.--+ -++-+.++...|..-|....-+++|+.+|++. -++|+.
T Consensus 584 ~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 777 77766 6677788899999999999998765433 13445788888888888899999999999998 678999
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc
Q 003148 642 VIWGSLLAAC-QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691 (844)
Q Consensus 642 ~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 691 (844)
.-|..++..| ++.|++..|...++..-..-|++....-.|..++...|.-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999887 6689999999999999999999998888888888888754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-11 Score=133.04 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=143.9
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHH--hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-HhHHHHH
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEK--NGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD-VSAWTAA 544 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-~~~~~~l 544 (844)
..|..++.-|.....++.|..+.+++.. ..+..|...+..+.+...+.+...++..++.++.+ ++ ..+.--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 3467778888888888888888877643 34556777788888999999999999998888873 21 2334445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC------------------------------CChhHHHHHHHH------------
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIK------------------------------PDSIVFVGVLTA------------ 582 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~------------------------------p~~~t~~~ll~a------------ 582 (844)
+.+-+..|+.+...++++-+...|+. |.......+.+.
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~ 651 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKT 651 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHH
Confidence 66667777777777766665544432 111111111111
Q ss_pred ---------HhccCcHHHHHHHHHHhHhhcCCC---------------C---------CcchHHHHHHHHHhcCChHHHH
Q 003148 583 ---------CSHGGLVNQGWHLFRSMTDIHGVS---------------P---------QIVHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 583 ---------~~~~g~~~~a~~~~~~m~~~~~~~---------------p---------~~~~~~~li~~~~~~g~~~eA~ 629 (844)
|.+.|++.++..+.+ ..|+. | +..+..-|+..|.+.|+++.|.
T Consensus 652 mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~ 727 (1088)
T KOG4318|consen 652 MDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERAS 727 (1088)
T ss_pred HhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHH
Confidence 222333333322221 11111 0 1112233667899999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 630 DLIKSMPVEPNDVIWGSLLAACQKHQ---NVDIAAYAAERITELDPEKSG---VHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 630 ~~~~~m~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.++.++++-|+..+...|...++++. ++-++....+++.++.|..+. .|.-.+-+..+...-+-|.+.+.+..+
T Consensus 728 glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~ee 807 (1088)
T KOG4318|consen 728 GLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEE 807 (1088)
T ss_pred hHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999998899988888888887754 556677777777777665433 333333434444445578888988887
Q ss_pred CC
Q 003148 704 QG 705 (844)
Q Consensus 704 ~~ 705 (844)
+.
T Consensus 808 q~ 809 (1088)
T KOG4318|consen 808 QL 809 (1088)
T ss_pred cc
Confidence 74
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-09 Score=115.94 Aligned_cols=485 Identities=13% Similarity=0.121 Sum_probs=320.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchH
Q 003148 146 NACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKE 222 (844)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 222 (844)
++.....+.+.|+-++.+.++.- +.+...| -+|++...++.|.+++++..+ .+...|.+-..---.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 33344455555666666666542 3333333 345556666777777766553 355667666555566777776
Q ss_pred HHHHHHH----HHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHhcCCHHHHHHH
Q 003148 223 AVYLFFE----MVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKAN--ALMVNALVDMYMKCGAVDTAKQL 296 (844)
Q Consensus 223 A~~l~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~ 296 (844)
...++.+ +...|+..+..-|..=..+|-..|..-....+...++..|++.. -.+++.-.+.+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 6666554 33457777777777777777777777777777777777666442 34666666777777777777777
Q ss_pred HHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCc
Q 003148 297 FGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEG 373 (844)
Q Consensus 297 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 373 (844)
|....+ .+...|...+..--..|..++-..+|++....-.+
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk------------------------------------ 582 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK------------------------------------ 582 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc------------------------------------
Confidence 766554 24455666666666667777777777776654221
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccccccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-TVVSWNSLIAGLIKNGDVESAREVFSEMPG--RDHISWNTMLGGLT 448 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~ 448 (844)
....+-....-+-..|++..|+.++...-+ | +...|-.-+.....+.++++|..+|.+... +....|.--+..--
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 122223333334444555555555544432 1 233455555555555555555555554443 34445554444445
Q ss_pred ccCChHHHHHHHHHHHhCCcccChhh-HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRVT-MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 527 (844)
-.+..++|++++++.++. -|+..- |..+-..+-+.++++.|+..|..-.+. .+..+..|-.|.+.=-+.|.+-.|.
T Consensus 663 ~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHH
Confidence 567778888888777653 455443 334444556667777777776544443 2446678888888889999999999
Q ss_pred HHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc
Q 003148 528 QVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH 603 (844)
Q Consensus 528 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 603 (844)
.+|++.. .+|...|-..|..-.+.|+.+.|..+..+.++. -|+. ..|..-|....+.++-......+ .+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DAL---kk-- 812 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KK-- 812 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHH---Hh--
Confidence 9999876 447789999999999999999999999988873 4544 67777777666666644333333 22
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 604 GVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 604 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
.+-|....-.+..++....+++.|.+.|.+. ...||. .+|.-+...+.+||.-+.-.+++.+...-+|.....|...
T Consensus 813 -ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 813 -CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred -ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 4556667777888899999999999999998 667764 4899899999999999999999999999999987777655
Q ss_pred H
Q 003148 682 S 682 (844)
Q Consensus 682 ~ 682 (844)
+
T Consensus 892 S 892 (913)
T KOG0495|consen 892 S 892 (913)
T ss_pred h
Confidence 4
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=148.92 Aligned_cols=256 Identities=18% Similarity=0.191 Sum_probs=113.6
Q ss_pred ccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHH-HccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC
Q 003148 443 MLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVAS-ACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG 521 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 521 (844)
+...+.+.|++++|++++++.......|+...|-.++. .+-..++.+.|.+.+..+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35566777888888888765544432455555544433 344567788888888877766533 55667777777 6889
Q ss_pred CHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccCcHHHHHHHHHH
Q 003148 522 DPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI-KPDSIVFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 522 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
++++|.+++...- .++...|..++..+.+.|+++++.++++++....- .++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887764 45667788888999999999999999999876432 34456677788888999999999999999
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..+ ..|+ ......++.++...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++++.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 988 6676 677888999999999999988888776 2234667899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.....+++++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999977654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-11 Score=130.09 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=92.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChHHHHHHHHHH
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP-----VEPNDVIWGSLLAAC 651 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~~~ 651 (844)
+.++..|.+.-+..++...-+.... +-+ | ..|..||+.+.+..++++|..+.++.. ..-|..-+..+.+..
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 4455566666566666654444333 111 2 679999999999999999999998873 223555677788888
Q ss_pred HhcCCHHHHHHHHHHHHh---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 003148 652 QKHQNVDIAAYAAERITE---LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRK 708 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 708 (844)
.+++....+..+++...+ ..|.-......+.|..+..|+.+.-.+..+-+...|+.-
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888888888877765 334334556677788889999999999999998888754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-12 Score=135.53 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=78.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH-
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC- 614 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~- 614 (844)
.+.+|-++...|.-+++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|...|+.... .+..||++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHH
Confidence 344555555555555555555555555555 4442 24444444444444455555555554433 33333332
Q ss_pred --HHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 615 --MVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 615 --li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
|.-.|.|.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|++.+++++-++|.|+-.-+..+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 334455555555555555554 44442 22333333344445555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHh
Q 003148 691 WTNVARVRLQMKE 703 (844)
Q Consensus 691 ~~~a~~~~~~m~~ 703 (844)
+++|.+.++.+++
T Consensus 573 ~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 573 YVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=122.44 Aligned_cols=130 Identities=8% Similarity=-0.010 Sum_probs=74.1
Q ss_pred hhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc----cH
Q 003148 66 YISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKF----TF 141 (844)
Q Consensus 66 ~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~ 141 (844)
+...|.+.|..... ..+|+..++-+.+..|.+..-..--.+-..+.+...+..|+.+|+.....-...+.. .+
T Consensus 203 vl~nlaqqy~~ndm---~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEANDM---TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhhhHH---HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34445556665555 667777777666555543222222223345667777777777776555432112222 23
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 003148 142 PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS 200 (844)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 200 (844)
+.+-..+.+.|.++.|..-|++..+.. |+..+.-.|+-.+.--|+-+..++.|.+|.
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 333344556777777777777776653 665555555555666677777777777664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-09 Score=109.18 Aligned_cols=500 Identities=12% Similarity=0.083 Sum_probs=307.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003148 172 DVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISA 248 (844)
Q Consensus 172 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 248 (844)
+..+|-....-=...+++..|+.+|+.... ++...|---+..=.++.....|..++++.+..=.+.|..=| .-+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHH
Confidence 334444333333455677888888887654 56667777777778888888888888887654222232222 22222
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCceehHHHHHHHHHcCChHHHHH
Q 003148 249 CAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGEC--KDRNLVLCNTIMSNYVRLGLAREALA 326 (844)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~ 326 (844)
=-..|++..|+++|..-.+ ..|+...+++.|++=.+...++.|+.++++. ..|++..|--...---++|+...|..
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 2345777777777776654 3677777777777777777777777777764 35677777666666667777777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHh----hcCChhhHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHcCCHHHHHHHHhhc
Q 003148 327 ILDEMLLHGPRPDRVTMLSAVSASA----QLGDLLCGRMCHGYVLRNGLEG-WDSICNTMIDMYMKCGKQEMACRIFDHM 401 (844)
Q Consensus 327 l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m 401 (844)
+|....+. -.|...-..++.+++ +....+.++-++...+..-... ...+|..+...--+.|+........-.-
T Consensus 229 VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 77666543 111221122222222 2334444444554444432111 1223333333333333322221111000
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccccccccccccCChHHHHHHHHHHHhCCcccCh------
Q 003148 402 SNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR------ 472 (844)
Q Consensus 402 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------ 472 (844)
.. --++.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.
T Consensus 307 Rk-----------------------~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~ 362 (677)
T KOG1915|consen 307 RK-----------------------FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWR 362 (677)
T ss_pred hh-----------------------hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHH
Confidence 00 001111112 3345555555555667777777777777654 44421
Q ss_pred -hhHHhHHHHc---cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH----hcCCHHHHHHHHHhcC--CCCHhHHH
Q 003148 473 -VTMVGVASAC---GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA----RCGDPQRAMQVFRRME--KRDVSAWT 542 (844)
Q Consensus 473 -~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~ 542 (844)
..|.-+=-+| ....+++.+++++...++ -++...+++.-+--||+ ++.++..|.+++.... .|....+.
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 1111111122 345688888899988887 35556667766666665 6789999999998776 56677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR 621 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 621 (844)
..|..-.+.++++....++++.++ ..|.. .+|......=...|+.|.|..+|+-+++...+.-....|.+.||-=..
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 888888889999999999999999 67755 788888777788999999999999988743333335577788888889
Q ss_pred cCChHHHHHHHHhC-CCCCChHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHh----cCCCCCc--hH
Q 003148 622 AGLLGEALDLIKSM-PVEPNDVIWGSLLAACQ-----KHQ-----------NVDIAAYAAERITE----LDPEKSG--VH 678 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~ 678 (844)
.|.++.|..++++. ...+...+|-++..--. +.+ ++..|..+|+++.. .+|.... ..
T Consensus 520 ~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LL 599 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLL 599 (677)
T ss_pred cchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999988 44555668888765433 334 66788888888875 3332211 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
-..-+.-..-|.-.+...+-.+|.+
T Consensus 600 Eaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 600 EAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHHHHHhcCchhhHHHHHHhccH
Confidence 2333444566777777777776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-10 Score=114.19 Aligned_cols=360 Identities=13% Similarity=0.096 Sum_probs=233.3
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHH--HH
Q 003148 269 GMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTML--SA 346 (844)
Q Consensus 269 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~l 346 (844)
+...|.+.+-...-.+-+.|....|+..|.....+-...|.+.+....-..+.+.+. .... |...|..-+. -+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHHH
Confidence 345555555555556667788888998888877655555555443222222222211 1111 1111111111 12
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHH
Q 003148 347 VSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAR 426 (844)
Q Consensus 347 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 426 (844)
..++-.....+++.+-.......|+..+..+-+-...++-...+++.|+.+|+++.+.|
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD--------------------- 292 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND--------------------- 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC---------------------
Confidence 23333444555555555555555655555554444444455555555555555554411
Q ss_pred HHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCc
Q 003148 427 EVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCD 506 (844)
Q Consensus 427 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 506 (844)
+.- --|..||+.+|-+-.....+.---+....+- +--
T Consensus 293 ----------PYR-----------------------------l~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR 329 (559)
T KOG1155|consen 293 ----------PYR-----------------------------LDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYR 329 (559)
T ss_pred ----------CCc-----------------------------chhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCC
Confidence 110 0123344444433221111111111111111 123
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTA 582 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 582 (844)
+.++..+.+-|+-.++.++|...|++..+ +-...|+-|..-|....+...|++-++..++ +.|- ...|.+|..+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 45666777888888999999999998874 3457899999999999999999999999999 7774 4899999999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~ 659 (844)
|.-.+...-|+-+|++..+ ++|+ ...|.+|.+.|.+.++++||++-|++. .-+.+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999987 6675 889999999999999999999999998 222345788889999999999999
Q ss_pred HHHHHHHHHh-------cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 660 AAYAAERITE-------LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 660 a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
|...+++-++ .+|+-..+..-|+.-+.+.++|++|..+.....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999887 344444455678888999999999988765543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-11 Score=120.23 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=173.1
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 003148 485 LGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELF 561 (844)
Q Consensus 485 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 561 (844)
.|+.-.+.+-+..+++....++ ..|--+..+|....+.++-.+.|+... ..|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4677777888888877654433 235566677999999999999998876 346677877777777788999999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003148 562 NEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP 639 (844)
Q Consensus 562 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p 639 (844)
++.+. +.|+. ..|.-+..+..+.+.++++...|+..+++ ++--++.|+.....+...++++.|.+.++.. .+.|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999 88877 67888888888999999999999999984 4444789999999999999999999999987 5555
Q ss_pred C---------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 640 N---------DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 640 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+ +.+-.+++-.-. .+++.+|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 222233332223 38999999999999999999999999999999999999999999987654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-11 Score=119.45 Aligned_cols=327 Identities=16% Similarity=0.134 Sum_probs=247.0
Q ss_pred hCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccc-ccccccc
Q 003148 369 NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISW-NTMLGGL 447 (844)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~li~~~ 447 (844)
.+...|...+-...-.+-+.|..+.|+..|......-+..|.+-+....-..+.+.+..+....+..+...- --+..+|
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344555555555556677888999999999888776666677766666666666666666555543321111 1233455
Q ss_pred cccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCC--CCchhHHhHHhhhHHhcC--CH
Q 003148 448 TQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGI--HCDMQLATALVDMFARCG--DP 523 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~k~g--~~ 523 (844)
....+.+++++-.......|+.-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++ |.+.. ++
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skL 315 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHH
Confidence 55567888888888888877665555444444555677899999999999998743 13667777665 44433 22
Q ss_pred H-HHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 524 Q-RAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 524 ~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
. -|..+++ +.+=-+.|.-.+.+-|...++.++|...|++.++ +.|.. ..|+.+..-|....+...|++-++.+++
T Consensus 316 s~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 2 2333332 2222344555566778888999999999999999 88887 5677777789999999999999999988
Q ss_pred hcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 602 IHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 602 ~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
+.|. -..|-.|+.+|.-.+...-|+-+|+++ .++| |...|.+|...|.+.++.++|++.+.+++.....+..++
T Consensus 393 ---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 ---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5564 678999999999999999999999999 7778 678999999999999999999999999999888888899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+.|+++|-+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-12 Score=135.01 Aligned_cols=252 Identities=15% Similarity=0.088 Sum_probs=193.8
Q ss_pred ccccccccCChHHHHHHHHHHHhCC-cc-cChhhHHhHHHHccccCchHHHHHHHH-HHHHhCCCCchhHHhHHhhhHHh
Q 003148 443 MLGGLTQENMFEEAMELFRVMLSER-IK-VDRVTMVGVASACGYLGALDLAKWIYA-YIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~li~~y~k 519 (844)
+..+|...+++++|.++|+...+.. .. -+...|+++|--.-+ +.+...+. .+++. -+..+.+|.++.+.|.-
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhh
Confidence 3445555566666666666655421 11 133445554432211 11122222 12222 24568899999999999
Q ss_pred cCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHH
Q 003148 520 CGDPQRAMQVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
+++.+.|++.|++..+- ...+|+-+..-+.....+|.|...|+..+. +.|.. -.|..+...|.+.++++.|.-.
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHH
Confidence 99999999999998854 456778777788889999999999999987 88877 6899999999999999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
|+++.+ +.|. .....++...+-+.|+.|+|+.+++++ .++| |+..--.-+..+...+++++|+..+|++.++-|
T Consensus 512 fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 512 FQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 999987 7787 566777888999999999999999998 5555 444444455667778899999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 673 EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 673 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++..|.+++.+|-+.|+.+.|..-+..|.+.
T Consensus 589 ~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 99999999999999999999999988887764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-08 Score=106.20 Aligned_cols=410 Identities=13% Similarity=0.096 Sum_probs=221.5
Q ss_pred chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCC-CCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH
Q 003148 65 SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNET-SATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPF 143 (844)
Q Consensus 65 ~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 143 (844)
.+|-.-+....+.|. +..-++.|++++. .+| ......|...|.-....+-++-++.+|++-.+. .| ..-.-
T Consensus 103 RIwl~Ylq~l~~Q~~---iT~tR~tfdrALr-aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~ee 174 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL---ITRTRRTFDRALR-ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREE 174 (835)
T ss_pred HHHHHHHHHHHhcch---HHHHHHHHHHHHH-hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHH
Confidence 344444555556666 7777777877654 233 233456777777777777777888888777653 22 22445
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHHhhcCC--CCc--ccHHHH
Q 003148 144 VLNACTKSSAFGEGVQVHGAIVKMG------FDRDVFVENCLINFYGECGDI---VDGRRVFDEMSE--RNV--VSWTSL 210 (844)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~--~~~--~~~~~l 210 (844)
-|.-+++.+++++|.+.+..++... .+.+-..|+-+.+..++.-+. -....++..+.. +|. ..|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 5666667777777777777665321 134455666665555554322 223334444443 232 368888
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCH
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAV 290 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 290 (844)
.+.|.+.|.++.|.++|++-.+.- ....-|+.+.++|+.-.....+..+- ...+.+..+. ..-++
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl 319 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDL 319 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhH
Confidence 888888888888888888766542 23444666666665432221111111 0001111110 00122
Q ss_pred HHHHHHHHhcCC---------------CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh------hhHHHHHHH
Q 003148 291 DTAKQLFGECKD---------------RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDR------VTMLSAVSA 349 (844)
Q Consensus 291 ~~A~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~ 349 (844)
+-...-|+.+.+ .++..|..-+. +..|+..+-+..|.+.... +.|-. ..|..+-..
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 333333443332 13444554443 3456777888888887664 33322 135556666
Q ss_pred HhhcCChhhHHHHHHHHHHhCCCch---hhHHHHHHHHHHHcCCHHHHHHHHhhcCC-C--------------------C
Q 003148 350 SAQLGDLLCGRMCHGYVLRNGLEGW---DSICNTMIDMYMKCGKQEMACRIFDHMSN-K--------------------T 405 (844)
Q Consensus 350 ~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~--------------------~ 405 (844)
|-..|+++.|+.+|....+..++.- ..+|..-.++-.+..+++.|.++.+.... | +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 7778888888888888877655432 55677777777778888888887776543 1 1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccc---cccccCChHHHHHHHHHHHhCCcccChh-hHHhHHHH
Q 003148 406 VVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLG---GLTQENMFEEAMELFRVMLSERIKVDRV-TMVGVASA 481 (844)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 481 (844)
...|...++.--..|-++....+++.+.+--+.|=-.+++ -+-.+..++++.+.+++-+..--.|+.. .|++.|.-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 2234444555555566666666666655422221111111 1223344566666665543332233332 22222222
Q ss_pred c---cccCchHHHHHHHHHHHH
Q 003148 482 C---GYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 482 ~---~~~~~~~~a~~i~~~~~~ 500 (844)
+ .....++.++.+|+++.+
T Consensus 557 fi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh
Confidence 1 112256666666666666
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-09 Score=112.11 Aligned_cols=195 Identities=15% Similarity=0.104 Sum_probs=152.4
Q ss_pred CCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHH
Q 003148 504 HCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGV 579 (844)
Q Consensus 504 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 579 (844)
+....+|-++.--|.-.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..+...-+ +-|.. ..+..+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHH
Confidence 3345556666666777788888888887766333 45788899999999999999988887776 44543 445556
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--C------CCC-ChHHHHHHHH
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--P------VEP-NDVIWGSLLA 649 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~------~~p-~~~~~~~ll~ 649 (844)
.--|...++.+-|.++|.++.. +-|. +..++-+.-+....+.+.+|..+|+.. + -.+ -..+|+.|..
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 6678888999999999988865 6565 556666666677788888888888776 1 112 2346888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+.+.|...+.+...
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-10 Score=123.88 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
..+.+...++++.++ +.++.....+..++...|+.++|.+++++..+ ..||... .++.+....++.+++.+..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHH
Confidence 344556666666665 34677778888888888888888888888887 3454421 1233334558888888888
Q ss_pred HHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 597 RSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 597 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
+...+ -.|+ ...+.++..++.+.|++++|.+.|+++ ...|+...+..|...+.+.|+.++|...+++.+.+.
T Consensus 318 e~~lk---~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 318 RQQIK---QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88877 3344 556778888889999999999999887 777888888888888889999999999999888753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-09 Score=118.35 Aligned_cols=246 Identities=10% Similarity=0.015 Sum_probs=168.4
Q ss_pred cccCChHHHHHHHHHHHhCCcccChhhHH--hHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHH
Q 003148 448 TQENMFEEAMELFRVMLSERIKVDRVTMV--GVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQR 525 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 525 (844)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|...++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555556666666555442 33332222 11234455566666666666665554 3356667777788888888888
Q ss_pred HHHHHHhcCCCCH-----------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 526 AMQVFRRMEKRDV-----------SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 526 A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
|.+++..+.+... ..|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888877763221 13333444444445556666666665442 23355678888899999999999999
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
.+++..+ ..|+... .++......|+.+++.+.+++. ...|+ ...+..+...|...|++++|+..++++++.+|
T Consensus 285 ~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9998877 3444421 1223333558999999999887 55665 44677888889999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 673 EKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 673 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
++ ..+..|+.++.+.|+.++|.+.+++-..
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87 4678999999999999999999987654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-10 Score=114.36 Aligned_cols=197 Identities=16% Similarity=0.065 Sum_probs=166.0
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 580 (844)
.....+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.+++..+ ..|+. ..+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 345667778899999999999999999776 33567888899999999999999999999998 44544 6677788
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHH
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 658 (844)
..+...|++++|.++++++.+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999999873222223556778889999999999999999987 44454 567888888999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+|...++++++..|.++..+..++.++...|++++|..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999888888888999999999999999999887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=128.38 Aligned_cols=255 Identities=13% Similarity=0.164 Sum_probs=106.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhhc-CCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHH
Q 003148 380 TMIDMYMKCGKQEMACRIFDHM-SNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAME 458 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 458 (844)
.+..++.+.|++++|.++++.. .... +..|...|..+.......+++++|++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---------------------------~~~~~~~~~~~a~La~~~~~~~~A~~ 65 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---------------------------PPDDPEYWRLLADLAWSLGDYDEAIE 65 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---------------------------cccccccccccccccccccccccccc
Confidence 4566677777777777777432 2210 00234445555555555666666666
Q ss_pred HHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC----
Q 003148 459 LFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---- 534 (844)
Q Consensus 459 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---- 534 (844)
.++++...+.. +...+..++.. ...++++.|.++.....+.. ++...+..++..|.+.|+++++.++++.+.
T Consensus 66 ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 66 AYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 66666554322 22233333333 45566666666655443332 345556677788888899999988888754
Q ss_pred -CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchH
Q 003148 535 -KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHY 612 (844)
Q Consensus 535 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 612 (844)
+.+...|..+...+.+.|+.++|++.+++.++ ..|+. .....++..+...|+.+++.++++...+.. +.+...+
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~ 217 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLW 217 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHH
Confidence 34677888889999999999999999999999 78875 567788889999999999999998887732 4556778
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
..+..+|...|+.++|+..+++. ...| |+.+...+..++...|+.++|..+.+++++
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88999999999999999999998 4455 667778888899999999999999888765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-10 Score=122.85 Aligned_cols=250 Identities=12% Similarity=0.034 Sum_probs=162.4
Q ss_pred ccCChHHHHHHHHHHHhCCcccChh-hHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRV-TMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 527 (844)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777666553 34332 223334455666888888888877765543333334444577777888888888
Q ss_pred HHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH---hccCcHHHHHHHHHHhHh
Q 003148 528 QVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTAC---SHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 528 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~ 601 (844)
..++.+. ..+...+..+...|.+.|++++|.+++.++.+.++.+.......-..++ ...+..+++.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888776 3356677788888888888888888888888876433222111111111 222333344445555544
Q ss_pred hcC--CCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 602 IHG--VSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVI---WGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 602 ~~~--~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
... .+.+...+..++..+...|+.++|.+.+++. ...||... +..........++.+.+++.+++.++..|+++
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 110 1125677888888888888888888888887 44555442 11111122334677888888888888888888
Q ss_pred --chHHHHHHHHHHcCCchHHHHHHHH
Q 003148 676 --GVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 676 --~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
.....++++|.+.|+|++|.+.+++
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7778888888888888888888884
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-09 Score=118.84 Aligned_cols=279 Identities=13% Similarity=0.044 Sum_probs=144.2
Q ss_pred HcCCHHHHHHHHhhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc--cccccccccccccCChHHHHHH
Q 003148 387 KCGKQEMACRIFDHMSN--KTV-VSWNSLIAGLIKNGDVESAREVFSEMPG--RDH--ISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 387 ~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~l 459 (844)
..|+++.|.+.+....+ |+. ..+-.....+.+.|+.+.|.+.+.+..+ ++. ...-.....+.+.|++++|+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666655443 221 2223334445555666666666655422 121 1112234455566777777777
Q ss_pred HHHHHhCCccc-ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHh-------HHhhhHHhcCCHHHHHHHHH
Q 003148 460 FRVMLSERIKV-DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT-------ALVDMFARCGDPQRAMQVFR 531 (844)
Q Consensus 460 ~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-------~li~~y~k~g~~~~A~~~~~ 531 (844)
++++.+.. | +...+..+...+...|+++.+.+.+....+.+..+...... .+++.-......+...+.++
T Consensus 176 l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77776643 4 33345555666666777777777777666665433222211 11111112222344444555
Q ss_pred hcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH---HHHHHHHhccCcHHHHHHHHHHhHhhcCC
Q 003148 532 RMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF---VGVLTACSHGGLVNQGWHLFRSMTDIHGV 605 (844)
Q Consensus 532 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 605 (844)
..++ .+...+..+...+...|+.++|.+++++.++ ..||.... ..........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 5542 3667777777778888888888888887777 45555321 11111222335555666666555552211
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHh--C-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 606 SPQIVHYGCMVDLLGRAGLLGEALDLIKS--M-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
.|+.....++..++.+.|++++|.+.|++ . ...||...+..+...+.+.|+.++|.+++++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12113334555555555555555555552 2 3445555555555555555555555555555443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-09 Score=105.01 Aligned_cols=384 Identities=16% Similarity=0.174 Sum_probs=229.2
Q ss_pred cCCHHHHHHHHHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHH
Q 003148 287 CGAVDTAKQLFGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCH 363 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 363 (844)
.+++..|+.+|++... +++..|--.+..-.++.+...|..++++.+..=+..|..-| --+..=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 4567788888887764 57778888888888888888888888887764333333222 2222233456666677666
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccc
Q 003148 364 GYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMS--NKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWN 441 (844)
Q Consensus 364 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 441 (844)
..-.+ .+|+...+++.|++-.+...++.|+.++++.. .|++.+|-....--.++|++..|..+|+...+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~------ 236 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF------ 236 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH------
Confidence 65544 35666777777777777777777777777643 466666666666666666666666665543321
Q ss_pred cccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC-chhHHhHHhhhHHhc
Q 003148 442 TMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC-DMQLATALVDMFARC 520 (844)
Q Consensus 442 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~ 520 (844)
.|+-.++..+ |.+...--.....++.++-++..+++.-... ...+|..+...=-+-
T Consensus 237 --------~~~d~~~e~l---------------fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 237 --------LGDDEEAEIL---------------FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred --------hhhHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 0001111111 1111111122345566666666666543222 133444444333334
Q ss_pred CCHHHHHHHH---Hh-----cC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHH---HH-HH-H
Q 003148 521 GDPQRAMQVF---RR-----ME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFV---GV-LT-A 582 (844)
Q Consensus 521 g~~~~A~~~~---~~-----~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~---~l-l~-a 582 (844)
|+....+.+. ++ +. .-|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|. .| ++ +
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHH
Confidence 4433333222 11 11 225567777777777777888888888877763 44522 1111 11 11 2
Q ss_pred H---hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH----HhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHh
Q 003148 583 C---SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLL----GRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQK 653 (844)
Q Consensus 583 ~---~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~----~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~ 653 (844)
| ....+++.+.++++...+ +.|. ..+++-+--+| .|+.++..|.+++-.+ |.-|-..++...+..-.+
T Consensus 373 lyeEle~ed~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 2 235677777777777776 4444 44554443333 3667777787777766 667777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.++++....++++.++..|.+..++...+..-...|++|.|+.+|+...++..
T Consensus 450 L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 77788888888888888887777777777777777888888888777776543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-11 Score=89.71 Aligned_cols=50 Identities=36% Similarity=0.508 Sum_probs=47.7
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 003148 202 RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAK 251 (844)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 251 (844)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-07 Score=99.52 Aligned_cols=443 Identities=16% Similarity=0.110 Sum_probs=245.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 003148 168 GFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVC 244 (844)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 244 (844)
.+.-|..+|-.|.-+...+|+++.+-+.|++... .....|+.+-..|.-.|....|+.+.+.-......|+..+---
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4566888999999999999999999999987653 3445799999999999999999999988765443454444333
Q ss_pred H-HHHHH-hcCCchHHHHHHHHHHHhC--C--CcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHc
Q 003148 245 V-ISACA-KLQNLELGDRVCAYIDELG--M--KANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRL 318 (844)
Q Consensus 245 l-l~a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 318 (844)
+ -+.|. +.+..++|...-..+++.. . ......|-.+.-+|...- +...+|.- +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HH
Confidence 3 33444 3456666665555554421 1 111222222222222110 00000100 11
Q ss_pred CChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHH
Q 003148 319 GLAREALAILDEMLLHG-PRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRI 397 (844)
Q Consensus 319 g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (844)
....++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+.....++.+-..+...+.-|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 12356677777766543 234433333322 334455555555555555554444555555555555555555555555
Q ss_pred HhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhC--CcccChhhH
Q 003148 398 FDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSE--RIKVDRVTM 475 (844)
Q Consensus 398 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~ 475 (844)
.+...+. .. .|-+....-+..-..-++.++|+.....+... ...|-..+.
T Consensus 536 vd~al~E---------------------------~~-~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 536 VDAALEE---------------------------FG-DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred HHHHHHH---------------------------hh-hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 4443220 00 11111111122223356667777666665431 000100000
Q ss_pred HhHHHHccccCchHHHHHHHHHHHHhCCC-------CchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHH
Q 003148 476 VGVASACGYLGALDLAKWIYAYIEKNGIH-------CDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAM 548 (844)
Q Consensus 476 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-------~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 548 (844)
. .|.. .+ .+.|.. ..+.++..+.. ++..-
T Consensus 588 ----~----~g~~---~~-----lk~~l~la~~q~~~a~s~sr~ls~----------------------------l~a~~ 623 (799)
T KOG4162|consen 588 ----D----EGKL---LR-----LKAGLHLALSQPTDAISTSRYLSS----------------------------LVASQ 623 (799)
T ss_pred ----h----hhhh---hh-----hhcccccCcccccccchhhHHHHH----------------------------HHHhh
Confidence 0 0000 00 000100 00111111110 11000
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh--------hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDS--------IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLL 619 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 619 (844)
.+.-..+.. |...-+.|+. ..|......+...+..++|...+.+..+ +.|- ...|.-....+
T Consensus 624 ~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 624 LKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLL 694 (799)
T ss_pred hhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHH
Confidence 000000000 1111112221 1233445567778888888888777765 4444 55666677888
Q ss_pred HhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 620 GRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAY--AAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
...|+++||.+.|... .+.||.+ +..++...+.+.|+-..|.. ++..+++++|.++.+|..|+.++-+.|+.++|.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 8999999999999887 7788654 77888888899998888887 999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCcccE
Q 003148 696 RVRLQMKEQGIRKLPGSSS 714 (844)
Q Consensus 696 ~~~~~m~~~~~~~~~~~s~ 714 (844)
+.|....+..- ..|-.+|
T Consensus 775 ecf~aa~qLe~-S~PV~pF 792 (799)
T KOG4162|consen 775 ECFQAALQLEE-SNPVLPF 792 (799)
T ss_pred HHHHHHHhhcc-CCCcccc
Confidence 99998876532 3444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-06 Score=93.67 Aligned_cols=492 Identities=13% Similarity=0.138 Sum_probs=289.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC--CCcccHHHH-----HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003148 176 ENCLINFYGECGDIVDGRRVFDEMSE--RNVVSWTSL-----ICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISA 248 (844)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 248 (844)
+..+.+.|.+.|-...|.+.+..+.. |.++ .+.+ +-+|.-.-.++++++.++.|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556777888888888888877653 2222 1111 22344455678899999999998888887777666666
Q ss_pred HHhcCCchHHHHHHHHHHHh-----------CCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------------
Q 003148 249 CAKLQNLELGDRVCAYIDEL-----------GMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--------------- 302 (844)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------- 302 (844)
|...-..+.-.++|+..... ++..|+.+.--.|.+.++.|++.+..++-++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55544444444555443321 3456677777889999999999998888765321
Q ss_pred ----C------------Ccee--h----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhh-------------HHHHH
Q 003148 303 ----R------------NLVL--C----NTIMSNYVRLGLAREALAILDEMLLHGPRPDRVT-------------MLSAV 347 (844)
Q Consensus 303 ----~------------~~~~--~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------------~~~ll 347 (844)
| |.+. | -..|..|++.=++.+.-.+.-.+++..+ +... ..-+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHHH
Confidence 1 1111 1 1123344443222222222222221111 1111 11222
Q ss_pred HHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHH-HH-----------HHhhcCCCCc---------
Q 003148 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMA-CR-----------IFDHMSNKTV--------- 406 (844)
Q Consensus 348 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~-----------~f~~m~~~~~--------- 406 (844)
.-+-+.+++..-...++..+..|.. |+.++|+|...|...++-.+- ++ -+.+-.+|..
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 3344445555555566666667755 778889998888765432211 10 0111111100
Q ss_pred ------------chHHHHHHHHHhcCCHHHHHHHHhhC----------------CC-CCccccccccccccccCChHHHH
Q 003148 407 ------------VSWNSLIAGLIKNGDVESAREVFSEM----------------PG-RDHISWNTMLGGLTQENMFEEAM 457 (844)
Q Consensus 407 ------------~~~~~li~~~~~~g~~~~A~~~~~~m----------------~~-~~~~~~~~li~~~~~~g~~~~A~ 457 (844)
..|.....-+.+..+.+-=.+++.+- ++ .|+..-..-+.++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 11222233344444444333333211 11 35555556678888888889999
Q ss_pred HHHHHHHhCCccc-ChhhHHhHHH--H--------------------------ccccCchHHHHHHHHHHHHhCCCCchh
Q 003148 458 ELFRVMLSERIKV-DRVTMVGVAS--A--------------------------CGYLGALDLAKWIYAYIEKNGIHCDMQ 508 (844)
Q Consensus 458 ~l~~~m~~~g~~p-~~~t~~~ll~--a--------------------------~~~~~~~~~a~~i~~~~~~~g~~~~~~ 508 (844)
+++++..-..-.- ....+..+|- | +...+..++|..||.. +..+..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~n~~ 1079 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDMNVS 1079 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hcccHH
Confidence 9988876432111 1111111111 1 1111122222222221 112222
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGL 588 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 588 (844)
..+.||+ .-++++.|.++-++..+ ...|..+..+-.+.|...+|++-|-+ .-|...|..++.++++.|.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCc
Confidence 2223332 23556666666555544 35799999999999999999987742 2345789999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
+++-..++....+ ..-+|.++ +.||-+|++.+++.|-++++. .||..-......-|...|.++.|.-++..
T Consensus 1149 ~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-- 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN-- 1219 (1666)
T ss_pred HHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--
Confidence 9999999987776 45556654 579999999999999988874 47888888889999999999988877763
Q ss_pred hcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 669 ELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 669 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.+.|..|+..+...|.+..|..--++..
T Consensus 1220 ------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1220 ------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4578888888888998888876665543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-06 Score=90.62 Aligned_cols=545 Identities=11% Similarity=0.085 Sum_probs=293.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHhC-CCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 104 FMYNSLIRGYSCIGLGVEAISLYVELAGF-GILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
..|-.-+....++|+...-...|++.... .+......|...++-..+.+-++.+..++.+.++.. +..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 47888888888999999999999886653 344455679999999889999999999999998653 3446777888
Q ss_pred HHhcCChHHHHHHHhhcCCCC----------cccHHHHHHHHHhCCCchH---HHHHHHHHHHcCCCCCcc--hHHHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSERN----------VVSWTSLICACARRDLPKE---AVYLFFEMVEEGIKPNSV--TMVCVIS 247 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~~~----------~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~pd~~--t~~~ll~ 247 (844)
+++.+++++|.+.+......| -..|+-+-.-.+++.+.-. ...+++.+.. .-||.. .|.+|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHH
Confidence 899999999999998876432 2346666555555443322 2223333322 223332 3556666
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCceehHHHHHHHHHcCCh
Q 003148 248 ACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK------DRNLVLCNTIMSNYVRLGLA 321 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~ 321 (844)
-|.+.|.++.|+.+++..+..- ..+.-++.+-+.|+....-.-+.++= +. +.+.+.+
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl------------- 319 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL------------- 319 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH-------------
Confidence 6666666666666666555432 23333444444444432211111110 00 0111111
Q ss_pred HHHHHHHHHHHhcCC-----------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhC-----CCchhhHHHHHHHHH
Q 003148 322 REALAILDEMLLHGP-----------RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNG-----LEGWDSICNTMIDMY 385 (844)
Q Consensus 322 ~~A~~l~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~Li~~y 385 (844)
+-.+.-|+.+...+. .-+..+|..-... ..|+..+-...+..+++.- ...-...+..+.+.|
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 122223333332211 1111222211111 1233333344444444421 112234577788888
Q ss_pred HHcCCHHHHHHHHhhcCCCCc-------chHHHHHHHHHhcCCHHHHHHHHhhCCC-CCccccccccccccccCChHHHH
Q 003148 386 MKCGKQEMACRIFDHMSNKTV-------VSWNSLIAGLIKNGDVESAREVFSEMPG-RDHISWNTMLGGLTQENMFEEAM 457 (844)
Q Consensus 386 ~~~g~~~~A~~~f~~m~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~ 457 (844)
-..|+++.|+.+|++..+-+- .+|..-..+-.+..+++.|.++.+.... |.... ..|...+.+.++.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQAR 472 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHHH
Confidence 888888888888888766222 2344444555566666677766665432 11000 1222222222211
Q ss_pred HHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---
Q 003148 458 ELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--- 534 (844)
Q Consensus 458 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--- 534 (844)
+++ +...|+..+.---..|-++..+.+++.+++..+.....+-| ..-.+-...-++++.+++++-.
T Consensus 473 -lhr---------SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 473 -LHR---------SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred -HHH---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccC
Confidence 111 11223333333334467778888888888777643333322 2222345566788888888755
Q ss_pred -CCCH-hHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhHHHHHHHH--HhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 535 -KRDV-SAWTAAIGAMAME---GNGEQAVELFNEMLRQGIKPDSIVFVGVLTA--CSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 535 -~~~~-~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
-|++ ..|++.+.-+.+. -..+.|..+|++.++ |..|...-+..|+-| =-.-|....|..+++++.. ++++
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~ 618 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKE 618 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCH
Confidence 2343 4688877666542 367888888888888 677766433333322 2245788888888888765 3444
Q ss_pred C--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHH---HHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHH
Q 003148 608 Q--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGS---LLAACQKHQNVDIAAYAAERITEL-DPE-KSGVHV 679 (844)
Q Consensus 608 ~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~ 679 (844)
. ...|+..|.--...=-...-.++++++ ..-||..+-.. +...-.+.|.++.|..++...-++ +|. ++..|.
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH
Confidence 3 445555443221111112223333333 22344332221 222235567777777777776664 443 344566
Q ss_pred HHHHHHHHcCCch
Q 003148 680 LLSNIYASAGKWT 692 (844)
Q Consensus 680 ~l~~~~~~~g~~~ 692 (844)
.--+--.+-|+-+
T Consensus 699 twk~FEvrHGned 711 (835)
T KOG2047|consen 699 TWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHhcCCHH
Confidence 6655556667633
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-11 Score=85.02 Aligned_cols=50 Identities=32% Similarity=0.535 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 003148 536 RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH 585 (844)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (844)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-09 Score=108.04 Aligned_cols=211 Identities=15% Similarity=0.060 Sum_probs=154.7
Q ss_pred CchHHHHHHHHHHHHhC-CCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHH
Q 003148 486 GALDLAKWIYAYIEKNG-IHC--DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVE 559 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 559 (844)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666665432 222 24567778888999999999999998876 3467899999999999999999999
Q ss_pred HHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC--C
Q 003148 560 LFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM--P 636 (844)
Q Consensus 560 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~ 636 (844)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 78876 6788888889999999999999999987 5565432222223345678899999999765 3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 637 VEPNDVIWGSLLAACQKHQNVDIAAYAAERIT-------ELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 637 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..|+...|. ......|+...+ ..++.+. ++.|+.+..|..|+.+|.+.|++++|...+++..+..
T Consensus 195 ~~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 334433332 222334555443 2333333 4566777899999999999999999999999988654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=97.23 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=162.4
Q ss_pred cccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHH
Q 003148 448 TQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 527 (844)
.-.|+.-.|...|+..+.....++.. |.-+-.++....+.++..+.|..+.+.+. -++.+|---..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 33566777777777777654333332 55566667777888888888888877653 35666766777788889999999
Q ss_pred HHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc
Q 003148 528 QVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH 603 (844)
Q Consensus 528 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 603 (844)
.=|++...- ++..|-.+-.+.-+.+++++++..|++.++ --|+. ..|+.....+...+++++|.+.|+..++
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 999987743 456676676676777899999999999998 46766 6788888899999999999999999987
Q ss_pred CCCCCc---------chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 604 GVSPQI---------VHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 604 ~~~p~~---------~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
++|+. .+.-.++-+- -.+++.+|+++++++ .+.|. ...+.+|...-.+.|++++|+++|++...+-.
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55551 1111122111 238899999999998 77774 45788888888999999999999999887543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-08 Score=97.36 Aligned_cols=281 Identities=14% Similarity=0.103 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHH
Q 003148 318 LGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRI 397 (844)
Q Consensus 318 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (844)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.+...+-+..-+++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554443 2233344444555566666666666655554455555566666666777777777666
Q ss_pred HhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccCh-----
Q 003148 398 FDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR----- 472 (844)
Q Consensus 398 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----- 472 (844)
.+++.+ |..+++.........|.+.|++.+.+.+..+|.+.|+--|.
T Consensus 176 v~~ll~----------------------------~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l 227 (400)
T COG3071 176 VDQLLE----------------------------MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL 227 (400)
T ss_pred HHHHHH----------------------------hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH
Confidence 655443 11133444444555555556666666666666555533322
Q ss_pred --hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 473 --VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 473 --~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
.++..++.-+... +..+.-...++..+ +.++..-.+++.-
T Consensus 228 e~~a~~glL~q~~~~-----------------------------------~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 228 EQQAWEGLLQQARDD-----------------------------------NGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHHHHHHHhcc-----------------------------------ccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 1233333322222 22222233344443 2234444455555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 627 (844)
+.+.|+.++|.++.++..+.+..|+- ..+-.+.+-++...-++..+...+.++..| ..+.+|..+|.+.+.+.+
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHH
Confidence 66666666666666666665555551 222244455555555555555554344333 455566666666666666
Q ss_pred HHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 628 ALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 628 A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
|.+.|+.. +..|+...|+-+..++.+.|+.++|.+..++.+
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66666654 555666666666666666666666666665555
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=115.49 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=176.7
Q ss_pred ChHHHHHHHHHHHhCCcccChhh-HHhHHHHc---------cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC
Q 003148 452 MFEEAMELFRVMLSERIKVDRVT-MVGVASAC---------GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG 521 (844)
Q Consensus 452 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~---------~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 521 (844)
..++|+.+|++..+. .|+... +..+..++ ...++.++|...+..+++.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457788888887763 554432 22222221 13345788888888888765 346677788888899999
Q ss_pred CHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHH
Q 003148 522 DPQRAMQVFRRME--K-RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 522 ~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
++++|...|++.. . .+...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 3 3466888899999999999999999999999 778763 33344555667899999999999
Q ss_pred HhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 598 SMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 598 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
++.+. ..|+ ...+..+...|...|+.++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 2354 445777888999999999999999987 5556544 4555555667667 47777777777643333
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 675 SGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33333477788888998888877 6666653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=109.85 Aligned_cols=230 Identities=14% Similarity=0.151 Sum_probs=170.4
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHHh-----C-CCCch-hHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C-C
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEKN-----G-IHCDM-QLATALVDMFARCGDPQRAMQVFRRMEK-------R-D 537 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g-~~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~-~ 537 (844)
.|+..+...|...|+++.|...+....+. | ..|.+ ...+.+...|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777665543 2 12222 2234467788899999999999988761 1 1
Q ss_pred ---HhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 538 ---VSAWTAAIGAMAMEGNGEQAVELFNEMLR-----QGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 538 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
..+++.|..+|...|++++|...+++..+ .|..+.. .-+..+...|...+.+++|..+++...+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 35678888899999999998888877654 2333332 3467777789999999999999998877554222
Q ss_pred --C----cchHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 003148 608 --Q----IVHYGCMVDLLGRAGLLGEALDLIKSM---------PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITE-- 669 (844)
Q Consensus 608 --~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 669 (844)
+ ..+|+.|..+|...|+++||+++++++ ...+. ...++.|..+|.+.++.++|.+.|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2 457899999999999999999999887 11232 34677888899999999999999888875
Q ss_pred --cCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 670 --LDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 670 --~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
..|+++ .+|..|+-+|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345554 467899999999999999999988875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-06 Score=91.67 Aligned_cols=577 Identities=13% Similarity=0.075 Sum_probs=318.3
Q ss_pred hhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHH-----HHHHHcCCCchHHHHHHHHHHhCCCCCCcccH
Q 003148 67 ISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSL-----IRGYSCIGLGVEAISLYVELAGFGILPDKFTF 141 (844)
Q Consensus 67 ~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 141 (844)
+-.+-+.|.+.|- +..|++.+..+- .+ .+. +..+.+ +-.|.-.-.++++++.++.|...+++.|..+.
T Consensus 609 ra~IAqLCEKAGL---~qraLehytDl~--DI-KR~-vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~ 681 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGL---LQRALEHYTDLY--DI-KRV-VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIV 681 (1666)
T ss_pred HHHHHHHHHhcch---HHHHHHhcccHH--HH-HHH-HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4556667777777 777777666221 00 011 111111 12333344677888888888887777776555
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH-----------hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---------
Q 003148 142 PFVLNACTKSSAFGEGVQVHGAIVK-----------MGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE--------- 201 (844)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------- 201 (844)
.-+..-|...-..+.-.++|+.... -++..|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 682 VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNf 761 (1666)
T KOG0985|consen 682 VQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNF 761 (1666)
T ss_pred HHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHH
Confidence 4444444433333333344443322 13567777888889999999999888887654320
Q ss_pred ----------------------CCcccH------HHHHHHHHhCCCchHHHHHHHHHHHcCCC-----------CCcchH
Q 003148 202 ----------------------RNVVSW------TSLICACARRDLPKEAVYLFFEMVEEGIK-----------PNSVTM 242 (844)
Q Consensus 202 ----------------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------pd~~t~ 242 (844)
+|.+.| --.|..|++.-++...-.+.-.+.+-... -..+..
T Consensus 762 LkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~ 841 (1666)
T KOG0985|consen 762 LKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPV 841 (1666)
T ss_pred HHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCCh
Confidence 111111 12244455443333322222222211110 011122
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHH----------HHHHHhcCCCCce------
Q 003148 243 VCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTA----------KQLFGECKDRNLV------ 306 (844)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A----------~~~f~~m~~~~~~------ 306 (844)
.-+..-+-+.+++..-...++..+..| ..|+.++|+|...|....+-.+- ..+=+-..+||..
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEee
Confidence 334444556667777777777777777 45888999998888765432211 0000001111110
Q ss_pred -----------------ehHHHHHHHHHcCChH---HHH--------HHHHHHHhcCCC--CChhhHHHHHHHHhhcCCh
Q 003148 307 -----------------LCNTIMSNYVRLGLAR---EAL--------AILDEMLLHGPR--PDRVTMLSAVSASAQLGDL 356 (844)
Q Consensus 307 -----------------~~~~li~~~~~~g~~~---~A~--------~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~ 356 (844)
.|....+-+....+.+ +.+ .+.++..+.++. -|....+....++-..+-.
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCc
Confidence 0111111222222211 111 223333333221 1222333444555544444
Q ss_pred hhHHHHHHHHHH--hCCCchhhHHHHHHHHHHH---------------------------cCCHHHHHHHHhhcCCCCcc
Q 003148 357 LCGRMCHGYVLR--NGLEGWDSICNTMIDMYMK---------------------------CGKQEMACRIFDHMSNKTVV 407 (844)
Q Consensus 357 ~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~---------------------------~g~~~~A~~~f~~m~~~~~~ 407 (844)
.+-.++++.++- +.+..+....|.|+-.-.| .+-+++|..+|+...- +..
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-n~~ 1079 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-NVS 1079 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc-cHH
Confidence 444444444431 1223333333444333333 3334445555444321 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 408 SWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
..+.||. .-+.+++|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCc
Confidence 1122221 22445555555554433 456888888888899999988877553 366778889999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+++-...+.++.+..-+|.+. +.||-+|+|.+++.+-++++ ..||+.-......-|-..|.++.|.-+|...-
T Consensus 1149 ~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-- 1221 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS-- 1221 (1666)
T ss_pred HHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh--
Confidence 999988888888877666543 57888899998888877664 35666666677777778888887777665432
Q ss_pred CCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCC--CChHHHH
Q 003148 568 GIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVE--PNDVIWG 645 (844)
Q Consensus 568 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~ 645 (844)
-|..|...+.+.|.++.|...-+++ .+..+|.-.-.++...+.+.-|. -.++. -...-..
T Consensus 1222 -------N~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1222 -------NFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELE 1283 (1666)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHH
Confidence 3666666777777777776655443 23456666666665544433221 11321 1233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
-|+.-|...|-+++-+..++..+.++..+-+.+.-|+-+|++-
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 6777788888899999999988888888888888888877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=116.33 Aligned_cols=211 Identities=9% Similarity=-0.028 Sum_probs=164.2
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH---------hcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFA---------RCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN 553 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 553 (844)
+.+++|...+...++.... +...+..+..+|. ..+++++|...+++.. ..+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3567888888888776422 3445555554443 2345889999999877 3467788889889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCChHHHHHH
Q 003148 554 GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV-HYGCMVDLLGRAGLLGEALDL 631 (844)
Q Consensus 554 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~ 631 (844)
+++|+..|++.++ ..|+. ..+..+..++...|++++|...++++.+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 77886 5677788899999999999999999988 566632 333445567778999999999
Q ss_pred HHhC--CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 632 IKSM--PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 632 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++. ...|+ ...+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22454 4456667777889999999999999998888888878888888888888 5888877777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-07 Score=88.99 Aligned_cols=266 Identities=12% Similarity=0.085 Sum_probs=182.1
Q ss_pred CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHH---HHHHHhcCCHHHHHHHHhhCCCC---Ccccccccc
Q 003148 371 LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSL---IAGLIKNGDVESAREVFSEMPGR---DHISWNTML 444 (844)
Q Consensus 371 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li 444 (844)
+..++....++.+.|...|+.++|...|++..--|+.+...| .-.+.+.|+.+....+...+... ....|-.-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 455677778899999999999999999998765443332222 22344556666555555444332 223344434
Q ss_pred ccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHH
Q 003148 445 GGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQ 524 (844)
Q Consensus 445 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 524 (844)
...-...+++.|+.+-++.++. .|+ +...+-.-...+...|+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~--~~r----------------------------------~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS--EPR----------------------------------NHEALILKGRLLIALERHT 351 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc--Ccc----------------------------------cchHHHhccHHHHhccchH
Confidence 4444555666666665555432 121 1111111123345568888
Q ss_pred HHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH-HHHh-ccCcHHHHHHHHHH
Q 003148 525 RAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVL-TACS-HGGLVNQGWHLFRS 598 (844)
Q Consensus 525 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll-~a~~-~~g~~~~a~~~~~~ 598 (844)
+|.-.|+... .-+..+|.-|+..|...|+..+|.-+-+.... .-|+. .+...+. ..|. ....-++|..++++
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 8888887655 34778899999999999999999888877666 34444 4444442 2333 33346789999988
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
..+ +.|+ ....+.+..++.+.|+.+++..++++. ...||...-+.|....+..+.+.+|...|..++.++|++-.
T Consensus 430 ~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 430 SLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 876 7888 666778889999999999999999987 67789999999999999999999999999999999998853
Q ss_pred h
Q 003148 677 V 677 (844)
Q Consensus 677 ~ 677 (844)
+
T Consensus 507 s 507 (564)
T KOG1174|consen 507 T 507 (564)
T ss_pred H
Confidence 3
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=95.60 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=141.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 618 (844)
...|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44567789999999999999999999 78887 6888888899999999999999999987 6776 6788889999
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 619 LGRAGLLGEALDLIKSMPVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
+|..|++++|...|+++-..|+ ..+|..+.....+.|+.+.|+..+++.++++|+.+.....++......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999833332 457888877778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
..+++.....+
T Consensus 193 r~~~~~~~~~~ 203 (250)
T COG3063 193 RLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHhcc
Confidence 99999887765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=97.46 Aligned_cols=296 Identities=13% Similarity=0.169 Sum_probs=180.9
Q ss_pred cCCHHHHHHHHhhcCCCCcchH---HHHHHHHHhcCCHHHHHHHHhhCCCCCccccc-------cccccccccCChHHHH
Q 003148 388 CGKQEMACRIFDHMSNKTVVSW---NSLIAGLIKNGDVESAREVFSEMPGRDHISWN-------TMLGGLTQENMFEEAM 457 (844)
Q Consensus 388 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~li~~~~~~g~~~~A~ 457 (844)
..+.++|.++|-+|.+.|..++ -+|.+.|.+.|.++.|.++.+.+.++...|++ .+..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678899999999887555444 45777888888888888888776654333322 2334455555556666
Q ss_pred HHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC
Q 003148 458 ELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD 537 (844)
Q Consensus 458 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~ 537 (844)
.+|..+.+.+. .-.....-|+..|-+..++++|+++-+++.+-+
T Consensus 128 ~~f~~L~de~e------------------------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDEGE------------------------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcchh------------------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 66655544321 011222345556666666666666655444221
Q ss_pred Hh--------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC
Q 003148 538 VS--------AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ 608 (844)
Q Consensus 538 ~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 608 (844)
.. -|--+...+....+.++|..++.+..+ ..|+.+- =..+.......|+++.|.+.++...+ -.|+
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e---Qn~~ 246 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLE---QNPE 246 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHH---hChH
Confidence 11 233344555556677777777777777 5566533 23344566677788888888877766 2343
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 609 --IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 609 --~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
.++...|..+|...|+.++...++.++ ...++...-..+...-..+.-.+.|...+.+-+...|.--+.|..+---.
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 556667777788888888877777766 44444444444444433344456666666666777776544444443323
Q ss_pred --HHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEE
Q 003148 686 --ASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEF 724 (844)
Q Consensus 686 --~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f 724 (844)
+..|++.+..-.++.|....++..|.+.....+-..|.|
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 345778888889999988878777776555544444444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-06 Score=91.87 Aligned_cols=437 Identities=14% Similarity=0.105 Sum_probs=229.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHH--HHHHH--Hh
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNA--LVDMY--MK 286 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y--~~ 286 (844)
+.-+.++|++++|.....++...+ +-|...+..=+-+..+.+.++.|..+. .+.+.. .+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~~---~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI---KKNGAL---LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcchh---hhcchhhHHHHHHHHH
Confidence 455677888888888888887765 233444555555666777777776333 222210 11111 23333 35
Q ss_pred cCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhcCChhhHHHHHHH
Q 003148 287 CGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRV-TMLSAVSASAQLGDLLCGRMCHGY 365 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~ 365 (844)
.+..|+|...++....-+..+-..-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-+.. .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----H
Confidence 6777777777774444443344444556667777777777777776654321111 111111111100 000 1
Q ss_pred HHHhCCCc--hhhHHHHHHHHHHHcCCHHHHHHHHhhcC--------CCCc-----chHHHHHHHHHhcCCHHHHHHHHh
Q 003148 366 VLRNGLEG--WDSICNTMIDMYMKCGKQEMACRIFDHMS--------NKTV-----VSWNSLIAGLIKNGDVESAREVFS 430 (844)
Q Consensus 366 ~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--------~~~~-----~~~~~li~~~~~~g~~~~A~~~~~ 430 (844)
+......| +-..+-.....+...|++.+|+++++... +.|. ..--..
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~------------------ 225 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP------------------ 225 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH------------------
Confidence 11111111 11111112333455566666666655541 1100 000000
Q ss_pred hCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhH---HHHccccCchHH--------------HHH
Q 003148 431 EMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV---ASACGYLGALDL--------------AKW 493 (844)
Q Consensus 431 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~--------------a~~ 493 (844)
.---|.-.+...|+.++|.+++...++.. .+|....... |.+...-.++-. +..
T Consensus 226 --------IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 226 --------IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred --------HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 00112223444566666666665555442 2232111111 111111111110 000
Q ss_pred HHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC-HhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCC
Q 003148 494 IYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD-VSAWTAAIGAMAM--EGNGEQAVELFNEMLRQGIK 570 (844)
Q Consensus 494 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~ 570 (844)
....+.. .-.....--++++.+|. +..+.+.++-...+... ...+.+++....+ .....+|.+++...-+ -.
T Consensus 297 ~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~ 371 (652)
T KOG2376|consen 297 LLSKLSK-KQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GH 371 (652)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cC
Confidence 1111100 00112223356677765 45577777777777433 3445555544322 2357778888887776 35
Q ss_pred CCh--hHHHHHHHHHhccCcHHHHHHHHH--------HhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-----
Q 003148 571 PDS--IVFVGVLTACSHGGLVNQGWHLFR--------SMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----- 635 (844)
Q Consensus 571 p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----- 635 (844)
|.. +.....+......|+++.|.+++. ...+ .+..| .+...++.+|.+.++-+-|..++.+.
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 555 344455556778999999999998 5544 33344 45667889999888766666666554
Q ss_pred ---CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 636 ---PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 636 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
...+. ..+|.-+...-.++|+.++|...++++++.+|++....+.+..+|+.. +.+.|..+-
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 22222 224444555556789999999999999999999999999999988865 345555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-06 Score=87.59 Aligned_cols=378 Identities=14% Similarity=0.127 Sum_probs=216.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh--cCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 003148 278 NALVDMYMKCGAVDTAKQLFGE--CKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGD 355 (844)
Q Consensus 278 ~~Li~~y~~~g~~~~A~~~f~~--m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 355 (844)
-+-|..|.|.|..-.|.+.-.. ..-.|......+..++.+...+++|-++|+++.. +-..+..+-+...
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 3456778888877777665422 1112333344444555555555555555555432 1111222222222
Q ss_pred hhhHHHHHHHHHHhCCCchhh-HHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 003148 356 LLCGRMCHGYVLRNGLEGWDS-ICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPG 434 (844)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (844)
+-.|.++-... ++..++ .-.+-.+-+...|+++.|..-|-+... .-..+.+-.....+.+|..+++.+..
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 22222222111 111111 112233344455666666665544322 12234455566667777777776666
Q ss_pred CCcc--ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhH
Q 003148 435 RDHI--SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATA 512 (844)
Q Consensus 435 ~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (844)
+++. -|..+...|+..|+++.|.++|-+.- .+.-.+..|.+.|.++.|..+-... .|.+.....|-+
T Consensus 761 qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIA 829 (1636)
T ss_pred hccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHH
Confidence 5433 35555666777777777777775531 2334555666777776665554332 233444555555
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVN 590 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 590 (844)
-..-.-+.|++.+|++++-.+..|+. .|..|-++|..++.+++.++ ..|+. .|-..+..-+...|+++
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChh
Confidence 55666778888888888877777764 36678888888887777664 34444 56666777788888888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCC-C---ChHHHHHHH------HHHHhcCCHHHH
Q 003148 591 QGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVE-P---NDVIWGSLL------AACQKHQNVDIA 660 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p---~~~~~~~ll------~~~~~~g~~~~a 660 (844)
.|.+.|-+..+ |.+-+++|-.++.+++|..+-+.-+-. . -...|.--+ ..+.++|-++.|
T Consensus 900 aae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~ 969 (1636)
T KOG3616|consen 900 AAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAA 969 (1636)
T ss_pred HHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHH
Confidence 88887765543 566788888889999998887765311 0 122343222 234456666666
Q ss_pred HHH------HHHHHh-----cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 661 AYA------AERITE-----LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~------~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
... |+-+++ ....-+..++.++.-+-..|++++|.+-+-...+.
T Consensus 970 id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 970 IDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 542 222222 22334567888888889999999998877666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-06 Score=90.69 Aligned_cols=547 Identities=14% Similarity=0.103 Sum_probs=317.4
Q ss_pred chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 003148 65 SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFV 144 (844)
Q Consensus 65 ~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 144 (844)
+-..+++.+..+. +..|..+|- + .|. -..-|..|....+|++|+.+-+. .|.+.-...-.+-
T Consensus 534 ykvra~lail~kk-----fk~ae~ifl-----e---qn~--te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy 595 (1636)
T KOG3616|consen 534 YKVRAMLAILEKK-----FKEAEMIFL-----E---QNA--TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSY 595 (1636)
T ss_pred HHHHHHHHHHHhh-----hhHHHHHHH-----h---ccc--HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHH
Confidence 3344455544442 667777776 2 111 13456777777788888776433 2222111122334
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh--hcCCCCcccHHHHHHHHHhCCCchH
Q 003148 145 LNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFD--EMSERNVVSWTSLICACARRDLPKE 222 (844)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~--~m~~~~~~~~~~li~~~~~~g~~~~ 222 (844)
++++...|.-+.|-++ ..+.--.-+-|..|.+.|....|.+.-. +-...|......+..++.+..-+++
T Consensus 596 ~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHh
Confidence 4555555554444332 1111122356889999999888876543 2223455556666677777777888
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 223 AVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANAL-MVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 223 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
|-++|+++.. +...+.++.+...+..|.++-... ++..++ .-...-+-+...|+++.|..-|-+..
T Consensus 667 agdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 667 AGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred hhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 8888887653 333444444444455555544332 222222 12233344455677777777664432
Q ss_pred CCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHH
Q 003148 302 DRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTM 381 (844)
Q Consensus 302 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 381 (844)
. .-..|.+-....++.+|+.+++.++..... ..-|..+...|+..|+++.|.++|... ..++--
T Consensus 734 ~-----~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~da 797 (1636)
T KOG3616|consen 734 C-----LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDA 797 (1636)
T ss_pred h-----HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHH
Confidence 1 122345667778899999999988876433 344677788899999999999887543 234678
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCC--CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHH
Q 003148 382 IDMYMKCGKQEMACRIFDHMSNK--TVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 382 i~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 459 (844)
|+||.+.|++++|.++-.+...| .++.|-+-..-.-++|++.+|++++-.+.+|+. -|..|-+.|..++.+++
T Consensus 798 i~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHH
Confidence 99999999999999999887765 455677777788899999999999988877764 46788899999999888
Q ss_pred HHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC--
Q 003148 460 FRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD-- 537 (844)
Q Consensus 460 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-- 537 (844)
..+-.-.-+. .|-..+..-+...|++..|+.-|-... -+.+-++||-..+.+++|.++-+.--..|
T Consensus 873 v~k~h~d~l~---dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~ 940 (1636)
T KOG3616|consen 873 VEKHHGDHLH---DTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAE 940 (1636)
T ss_pred HHHhChhhhh---HHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHH
Confidence 8765322111 233344445556788887776654332 24567889999999999998876543222
Q ss_pred ---HhHHHHH------HHHHHhcCChHHHH-------------HHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 003148 538 ---VSAWTAA------IGAMAMEGNGEQAV-------------ELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 538 ---~~~~~~l------i~~~~~~g~~~~A~-------------~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
...|.-- +..+-++|..++|+ ++-+-..+.. .|. ...-+..-+...|++++|...
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHh
Confidence 2234322 22233344444433 3322222211 111 122233345678899999887
Q ss_pred HHHhHhhcCCCCCcchHHH-------------------HHHHHHhcCChHHHHHHHHhCCCCCCh--HHHHHHHHHHHhc
Q 003148 596 FRSMTDIHGVSPQIVHYGC-------------------MVDLLGRAGLLGEALDLIKSMPVEPND--VIWGSLLAACQKH 654 (844)
Q Consensus 596 ~~~m~~~~~~~p~~~~~~~-------------------li~~~~~~g~~~eA~~~~~~m~~~p~~--~~~~~ll~~~~~~ 654 (844)
+-+.++.. .-..+|.. -+.++.+..+++.|..+-+.- -||. .++..-..+....
T Consensus 1018 yveaikln---tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aiee 1092 (1636)
T KOG3616|consen 1018 YVEAIKLN---TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIEE 1092 (1636)
T ss_pred hHHHhhcc---cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhccccc
Confidence 77666511 11111111 123344444444444444332 1221 1233333333445
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
|++-.|+..+-++ ..|+ ...+-|...+.|.+|.++-+.
T Consensus 1093 ~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1093 GDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred cchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 6666665543222 2332 234557889999999887643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-07 Score=94.97 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=198.3
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
.|+|.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.++.++.+..-.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888876665444 3345555566677889999999998888875577778888888888899999999887
Q ss_pred HHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 530 FRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-------IVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 530 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
.+... .++.........+|.+.|++.+...++.+|.+.|+--|. .++..++.-+.+.+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 76554 667888899999999999999999999999998876654 46788888888888877777888877
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
..+ .+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. . ..+-.+.+-++.+.-++..++.+...|++|..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 663 4455566678888999999999999998877 3222333 2 223346677888888899999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..|+..|.+.+.|.+|.+.++...+.+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 999999999999999999998766543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-07 Score=91.07 Aligned_cols=244 Identities=12% Similarity=0.138 Sum_probs=180.4
Q ss_pred cCChHHHHHHHHHHHhCCcccCh-hhHHhHHHHccccCchHHHHHHHHHHHHhC-CCCc--hhHHhHHhhhHHhcCCHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDR-VTMVGVASACGYLGALDLAKWIYAYIEKNG-IHCD--MQLATALVDMFARCGDPQR 525 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~li~~y~k~g~~~~ 525 (844)
+++.++|.++|-+|.+. .|.. .+-.++-+-+-+.|.++.|..+|+-+.+.. ...+ ....-.|..-|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46788888888888763 2222 233345556677888999999998776642 2222 2234457778999999999
Q ss_pred HHHHHHhcCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCcHHHHHHHHHH
Q 003148 526 AMQVFRRMEKRDV---SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 526 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
|+.+|..+.+.+. .....|+..|.+..++++|++.-+++...|-++..+ .|.-+........+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999886443 456678999999999999999999999977666553 366677777778899999999999
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND--VIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
..+ ..|+ +..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|.+.|+.++++..+.++.+..+..
T Consensus 206 Alq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 887 4455 444556789999999999999999988 455653 377888899999999999999999999988865
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHH
Q 003148 675 SGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
. .-..++..-....-.++|.....
T Consensus 283 ~-~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 283 D-AELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred c-HHHHHHHHHHHhhChHHHHHHHH
Confidence 4 34444444444444444544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-06 Score=93.57 Aligned_cols=582 Identities=14% Similarity=0.035 Sum_probs=277.0
Q ss_pred hhhHHHHHHhhcCCCCc-chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHH
Q 003148 48 LKQPHCHILKQGLGHKP-SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLY 126 (844)
Q Consensus 48 ~~~~~~~~~~~g~~~~~-~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 126 (844)
...+|..+....+.++. ..+..|=..|...-+ .-.|++.|+.+. +....+..+|......|++..+++.|..+.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAF--eLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAF--ELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHh--cCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34455555444444432 456666666665555 778888888776 666778888888889999999999888873
Q ss_pred HHHHhCC-CCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 003148 127 VELAGFG-ILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVV 205 (844)
Q Consensus 127 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 205 (844)
-..-+.. ...-...|..+--.+-..++...+..-|+...+.. +-|...|..|..+|.++|+...|.++|++...-++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 2222111 00011122233333445566666666666666655 456677788888888888888888888776654444
Q ss_pred cHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHH
Q 003148 206 SWTSLI---CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVD 282 (844)
Q Consensus 206 ~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 282 (844)
+|-.-- ..-+..|.+.+|++.+......- .++ ..+....|+.+.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-----s~e--------~~~q~gLaE~~ir~ak---------------- 679 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAF-----SLE--------RTGQNGLAESVIRDAK---------------- 679 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHH--------HHhhhhHHHHHHHHHH----------------
Confidence 333221 22345677777777766654320 000 0111111221111111
Q ss_pred HHHhcCC-------HHHHHHHHHhcCC----CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 003148 283 MYMKCGA-------VDTAKQLFGECKD----RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 283 ~y~~~g~-------~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
.+.-.|- ++++.+.|--... .+...|-.+- .|..+|-...- . .|+......+..-.-
T Consensus 680 d~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e~-~-~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 680 DSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEEP-S-IVNMHYLIILSKQLE 747 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhcc-c-chHHHHHHHHHHHHH
Confidence 1111111 2222222221111 1122222221 22233332220 0 222211111111122
Q ss_pred hcCCh---h---hHHHHHHHHHHhCCCchhhHHHHHHHHHHH----cC----CHHHHHHHHhhcCC---CCcchHHHHHH
Q 003148 352 QLGDL---L---CGRMCHGYVLRNGLEGWDSICNTMIDMYMK----CG----KQEMACRIFDHMSN---KTVVSWNSLIA 414 (844)
Q Consensus 352 ~~~~~---~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g----~~~~A~~~f~~m~~---~~~~~~~~li~ 414 (844)
..+.. + .|-+.+..-++ +..+...+..|..-|.+ +| +...|...+....+ .+...||.|.-
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV 825 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV 825 (1238)
T ss_pred hcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 22222 1 11111111111 11123333333333332 22 23456666666543 67788888866
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCccccccccccccccCChHHHHHHHHHHHhCCccc-ChhhHHhHHHHccccCchHH
Q 003148 415 GLIKNGDVESAREVFSEMP---GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKV-DRVTMVGVASACGYLGALDL 490 (844)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~ 490 (844)
. ...|++.-|.-.|-+-. +.+..+|..+...+.++.+++.|...|...+.. .| |.+.+..........|+.-+
T Consensus 826 l-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred h-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHH
Confidence 6 66677777777665443 247789999999999999999999999888763 44 44444333322334455555
Q ss_pred HHHHHHHH--H--HhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-------------CCCHhHHHHHHHHHHhcCC
Q 003148 491 AKWIYAYI--E--KNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-------------KRDVSAWTAAIGAMAMEGN 553 (844)
Q Consensus 491 a~~i~~~~--~--~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~~~~~g~ 553 (844)
...++..- . ..|--++..-+-+-.......|+.++-+..-+.+. ..+...|.......-+.+.
T Consensus 903 ~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~e 982 (1238)
T KOG1127|consen 903 RLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEE 982 (1238)
T ss_pred HHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHH
Confidence 55555442 1 12222222222222222334455444333333222 1233455555555555566
Q ss_pred hHHHHHHHHHHHHC-CCCCChhHHHH----HHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH--HhcCChH
Q 003148 554 GEQAVELFNEMLRQ-GIKPDSIVFVG----VLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLL--GRAGLLG 626 (844)
Q Consensus 554 ~~~A~~l~~~m~~~-g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~ 626 (844)
+++|.++..+.+.- ..+-|..+|+. ....+...|.++.|..-+ +..|-.+--..+...+ .-.|+++
T Consensus 983 y~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~-------~~~~~evdEdi~gt~l~lFfkndf~ 1055 (1238)
T KOG1127|consen 983 YRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS-------WKEWMEVDEDIRGTDLTLFFKNDFF 1055 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh-------cccchhHHHHHhhhhHHHHHHhHHH
Confidence 66666655554320 01223333332 112233344444333322 2222211111111111 2256667
Q ss_pred HHHHHHHhC-C---CCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 627 EALDLIKSM-P---VEPNDVI-WGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 627 eA~~~~~~m-~---~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
++.+.|+++ . -..|.++ ...++......+.-+.|...+-+...+.|.+......|.-++.-.
T Consensus 1056 ~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1056 SSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHh
Confidence 777777666 1 1223222 233333334555556666666666666665555555555554433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-08 Score=97.04 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=132.2
Q ss_pred HHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 003148 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE 555 (844)
Q Consensus 479 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 555 (844)
...+...|+++.+...+..+.+.. +.+...+..+...|...|++++|.+.|++.. ..+...|..+...+...|+++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHH
Confidence 334444455555555555444432 2234556667777788888888888887665 335567777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
+|++.|++..+....|.. ..+..+...+...|++++|...+++..+ ..|+ ...+..+...+...|++++|.+.++
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888874333332 4566677778888899999999888877 3343 5567788888888999999988888
Q ss_pred hC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 634 SM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 634 ~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+. ...| +...+..+...+...|+.+.|....+.+.+..|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 194 RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 76 3333 445666666777788899998888877766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5e-07 Score=89.07 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=88.1
Q ss_pred HHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHHhcCCc
Q 003148 180 INFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMV-CVISACAKLQNL 255 (844)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~~ 255 (844)
...|.+.|++++|..++.-+.+ ++...|--|...+.--|.+.+|..+-... |+..... .++...-+.++-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 3455566777777776665432 34445555555555566666666554432 2222222 333334456666
Q ss_pred hHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHH-HHHHHcCChHHHHHHHHHHH
Q 003148 256 ELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIM-SNYVRLGLAREALAILDEML 332 (844)
Q Consensus 256 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~ 332 (844)
++....|+.+...- .-.-+|..+..-.-.+.+|++++.++.. |+....|.-+ -+|.+..-++-+.++++--+
T Consensus 138 k~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 66666666654321 2223444444444467888888888764 4445555533 46677777777777777666
Q ss_pred hcCCCCChhhHHHHHHHHh
Q 003148 333 LHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 333 ~~g~~p~~~t~~~ll~~~~ 351 (844)
+. .||+ |+..=|.+|.
T Consensus 213 ~q--~pdS-tiA~NLkacn 228 (557)
T KOG3785|consen 213 RQ--FPDS-TIAKNLKACN 228 (557)
T ss_pred Hh--CCCc-HHHHHHHHHH
Confidence 54 3443 4444455554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-07 Score=95.03 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccccccccccccccCChHHHHHHHHHHHhC--C-cccChhhHHhHH
Q 003148 406 VVSWNSLIAGLIKNGDVESAREVFSEMPGRD---HISWNTMLGGLTQENMFEEAMELFRVMLSE--R-IKVDRVTMVGVA 479 (844)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g-~~p~~~t~~~ll 479 (844)
..+|-++.--|...|+..+|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. | -.| +.-+-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlg 387 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLG 387 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHH
Confidence 4455555555555566666666665443332 347888888888888888888887776542 1 111 11112
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHH
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVE 559 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 559 (844)
--|.+.++++.|.+.+.++.... +.|+.+.+-+.-++.+.+.+. +|..
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~-------------------------------~A~~ 435 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP-------------------------------EALK 435 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH-------------------------------HHHH
Confidence 22344455555555555444332 334444444444444444444 4444
Q ss_pred HHHHHHHC----C-CCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHH
Q 003148 560 LFNEMLRQ----G-IKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLI 632 (844)
Q Consensus 560 l~~~m~~~----g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~ 632 (844)
+|+..++. + -++ -..+++.|..+|.+.+.+++|+..+++... ..| +..+|+++.-.|...|+++.|.+.|
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 44443310 0 011 223455555566666666666666666554 222 3555566666666666666666666
Q ss_pred HhC-CCCCChHHHHHHHH
Q 003148 633 KSM-PVEPNDVIWGSLLA 649 (844)
Q Consensus 633 ~~m-~~~p~~~~~~~ll~ 649 (844)
.+. .++||..+-..+++
T Consensus 513 hKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 513 HKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHhcCCccHHHHHHHH
Confidence 655 55665555444444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-06 Score=86.50 Aligned_cols=277 Identities=12% Similarity=0.051 Sum_probs=178.3
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhh----HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVT----MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT 511 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 511 (844)
|+.....+...+...|+..+|+..|++.+. +.|+.++ |..+| ...|+.+....+...+....-. ....|-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~~-ta~~wf 304 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKVKY-TASHWF 304 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhhhc-chhhhh
Confidence 444455555666666666666666666544 2333322 21222 3345555555544443322100 111111
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccC
Q 003148 512 ALVDMFARCGDPQRAMQVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGG 587 (844)
Q Consensus 512 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 587 (844)
.-........+++.|..+-++..+- ++..+-.-...+.+.|+.++|.-.|+..+. +.|.. ..|..|+..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 1111223446777888877776643 344444445667888999999999999988 78765 78999999999999
Q ss_pred cHHHHHHHHHHhHhhcCCCCCcchHHHHH-HHHHh-cCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHH
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQIVHYGCMV-DLLGR-AGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYA 663 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 663 (844)
...||.-.-+...+..+ .+..+.+.+. +.+.- .---++|.+++++. .++|+-. ..+.+...|...|..+.++..
T Consensus 383 ~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99999887776665322 2233333331 22222 22357889998887 7778744 566777788899999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Q 003148 664 AERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLRE 743 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 743 (844)
+++.+...|++ ..++.|++++.....+.+|...|...... +|+.+....-++.
T Consensus 461 Le~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHH
Confidence 99999988876 68899999999999999999998776643 5666666666677
Q ss_pred HHHHHH
Q 003148 744 MNCRLR 749 (844)
Q Consensus 744 l~~~~~ 749 (844)
++++++
T Consensus 514 lEK~~~ 519 (564)
T KOG1174|consen 514 LEKSDD 519 (564)
T ss_pred HHhccC
Confidence 666655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-07 Score=101.73 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhc----C-CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIH----G-VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--------PVEPN 640 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~ 640 (844)
++..+...|.+.|++++|.++|+++++.. | ..+. ..+++.|...|.+.++.++|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 45556666666666666666666554421 1 1111 334556666677777777666666654 33455
Q ss_pred h-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 641 D-VIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 641 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
. .+|..|...|...|++|.|+++.++++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 4889999999999999999999888874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-05 Score=86.62 Aligned_cols=462 Identities=14% Similarity=0.117 Sum_probs=256.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCC
Q 003148 142 PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRD 218 (844)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g 218 (844)
..+++.| ..+.+..+....+.+++ +++....+.....-.+...|+-++|......-.. ++.++|..+.-.+-...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 3334433 34556666666666666 3333333333222334556778888777665443 56688998888888888
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 219 LPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFG 298 (844)
Q Consensus 219 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 298 (844)
++++|+..|+.....+ ||.. .++.-|.-.-++.|+++.....-.
T Consensus 90 ~Y~eaiKcy~nAl~~~--~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE--KDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred hHHHHHHHHHHHHhcC--CCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8999999998877642 3321 122222222222223332222222
Q ss_pred hcC---CCCceehHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCChhhHHHHHH------HHhhcCChhhHHHHHHHHHH
Q 003148 299 ECK---DRNLVLCNTIMSNYVRLGLAREALAILDEMLLHG-PRPDRVTMLSAVS------ASAQLGDLLCGRMCHGYVLR 368 (844)
Q Consensus 299 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~ 368 (844)
... ...-..|.....++.-.|+...|..++++..+.. -.|+...+.-... .....|.++.+.+......+
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 221 1244678888888888888888888888887654 2455544433222 22345555555544433222
Q ss_pred hCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCcchHHH-HHHHHHhcCCHHHHH-HHHhhCCCC---Cccccc
Q 003148 369 NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--KTVVSWNS-LIAGLIKNGDVESAR-EVFSEMPGR---DHISWN 441 (844)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~---~~~~~~ 441 (844)
. +.......-.-.+.+.+.+++++|..++..+.. ||-.-|.- +..++.+-.+.-++. .+|....+. ....-.
T Consensus 214 ~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 214 Q-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred H-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 1 222233344567788889999999999998876 44444444 344443343433443 555555431 100000
Q ss_pred cccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC
Q 003148 442 TMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG 521 (844)
Q Consensus 442 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 521 (844)
.=++......-.+..-+.+..+.+.|+.+-...+.++.. . .+... +.-.++..|...-
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~---p~k~~----------------~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---D---PEKVA----------------FLEKLVTSYQHSL 350 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---c---hhHhH----------------HHHHHHHHHHhhc
Confidence 001111112223334445566677776664333333321 1 11100 1112222222111
Q ss_pred CHHHHHHHHHh--cCCCCHhHHHH--HHHHHHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHH
Q 003148 522 DPQRAMQVFRR--MEKRDVSAWTA--AIGAMAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 522 ~~~~A~~~~~~--~~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.-..+....+. ...|....|.. ++..|-..|+++.|+.+++..+. ..|..+ -|..-...+.|.|++++|..++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 10000000000 22456666766 56778889999999999999988 788874 5666678999999999999999
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCC--CC----hHHHHHHH--HHHHhcCCHHHHHHHHH
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVE--PN----DVIWGSLL--AACQKHQNVDIAAYAAE 665 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~--p~----~~~~~~ll--~~~~~~g~~~~a~~~~~ 665 (844)
+...+ =-.||...-+--+.-..|+.+.++|.++.... +.. .| .-.|-.+- .+|.+.|++.+|++-+.
T Consensus 429 ~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 429 DEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 99887 12355444445666778999999999987665 210 01 22565553 35777788877776554
Q ss_pred HHH
Q 003148 666 RIT 668 (844)
Q Consensus 666 ~~~ 668 (844)
.+.
T Consensus 507 ~i~ 509 (700)
T KOG1156|consen 507 EIE 509 (700)
T ss_pred hHH
Confidence 443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-08 Score=95.93 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=141.3
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhc
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARC 520 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 520 (844)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+- ..|.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLs-----------------------------------kvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLS-----------------------------------KVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHH-----------------------------------HHHHHh
Confidence 34566666666666666666665543 23233444444 445555
Q ss_pred CCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHH
Q 003148 521 GDPQRAMQVFRRMEK--R-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 521 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.....|..+|.+..+ | |+....-+...+...++.++|++++++..+ ..|+. .....+...|.-.++++-|..++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHH
Confidence 555555555554441 2 222223344445555566666666666655 34433 34444555555566666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
+++.+ .|+. +.+.|+.+.-.+.-.++++-++.-|++. .-.|+ ..+|..|.....-.||+..|.+.++-++..+
T Consensus 348 RRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 66655 3332 2344555555555556666666666555 22343 4589888888888999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++...++.|+-+-.+.|+.++|+.++...++.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999999999888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-07 Score=93.92 Aligned_cols=221 Identities=13% Similarity=-0.009 Sum_probs=159.6
Q ss_pred cccccCChHHHHHHHHHHHhCC-cccCh--hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCC
Q 003148 446 GLTQENMFEEAMELFRVMLSER-IKVDR--VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGD 522 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~ 522 (844)
.....+..+.++.-+.+++... ..|+. ..+...-..+...|+.+.|...+...++.. +.+...++.+...|...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3444567788888888887642 23332 345555566778899999999999888865 3467889999999999999
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 523 PQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 523 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
+++|...|+...+ .+...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|.+.|++.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999998863 3567888899999999999999999999998 6787653222233345678899999999776
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHH--HHHHHhC-C----CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEA--LDLIKSM-P----VEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA--~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.. ...|+... ..++.. ..|++.++ .+.+.+. . ..| ....|..+...+...|+.++|+..++++++.+
T Consensus 192 ~~--~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 54 23343222 233333 34555443 3333322 1 122 23579999999999999999999999999999
Q ss_pred CCC
Q 003148 672 PEK 674 (844)
Q Consensus 672 p~~ 674 (844)
|.+
T Consensus 267 ~~~ 269 (296)
T PRK11189 267 VYN 269 (296)
T ss_pred Cch
Confidence 744
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.1e-08 Score=102.15 Aligned_cols=219 Identities=18% Similarity=0.171 Sum_probs=164.1
Q ss_pred cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003148 483 GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVE 559 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 559 (844)
.+.|++..|.-.|+..++.. +.+...|--|.-.-...++-..|+..+++..+ .|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777665 33666777777777777777777777777663 355666777777888888888888
Q ss_pred HHHHHHHCCCCCChhHHHHH--------HHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 003148 560 LFNEMLRQGIKPDSIVFVGV--------LTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDL 631 (844)
Q Consensus 560 l~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 631 (844)
.++.-+.. .|...-...- -....+........++|-.+....+.++|..++.+|.-+|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88777652 2211100000 0122233344555666666665566668888999999999999999999999
Q ss_pred HHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 632 IKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 632 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|+.+ .++| |...||-|...+....+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9988 7788 56799999999999999999999999999999999999999999999999999999988766543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.4e-05 Score=74.61 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHH-HHHHHhcCChHHHHHHHH
Q 003148 487 ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR---DVSAWTAA-IGAMAMEGNGEQAVELFN 562 (844)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~l~~ 562 (844)
.++...-.+..+...-...|.+.+| +..+++..|+..+|+++|-.+..+ |-.+|.++ ...|.++++++.|-.++-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4455555555555554555666665 778889999999999999888754 55677665 457888999988866654
Q ss_pred HHHHCCCCCChhHH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHH
Q 003148 563 EMLRQGIKPDSIVF-VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG 613 (844)
Q Consensus 563 ~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 613 (844)
++ .-..+..+. ..+.+-|.+.+.+--|-+.|+.+.. ..|+++.|.
T Consensus 453 k~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 453 KT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWE 498 (557)
T ss_pred hc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccC
Confidence 43 323344444 3445578899998888888888876 778888774
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-05 Score=87.87 Aligned_cols=519 Identities=12% Similarity=0.029 Sum_probs=277.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchH
Q 003148 168 GFDRD-VFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKP-NSVTM 242 (844)
Q Consensus 168 g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~ 242 (844)
.+.++ ...|..|...|...-+...|.+.|+..-+ -|..+|.....-|++..+++.|..+.-.--+. .| -...+
T Consensus 486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~ 563 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKE 563 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHh
Confidence 33344 35788899999988899999999998765 46678999999999999999999983222221 11 11112
Q ss_pred HH--HHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHH---HHHHHHH
Q 003148 243 VC--VISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNT---IMSNYVR 317 (844)
Q Consensus 243 ~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~---li~~~~~ 317 (844)
+. .--.+...++...+..-++...+.. +.|...+..|..+|.++|++..|.++|.+...-+..+|-. ....-+.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 22 2222345566666777777666654 4478899999999999999999999998877654444332 2233456
Q ss_pred cCChHHHHHHHHHHHhcC------CCCChhhHHHHHHHHhhcCCh-------hhHHHHHHHHHHhCCCchhhHHHHHHHH
Q 003148 318 LGLAREALAILDEMLLHG------PRPDRVTMLSAVSASAQLGDL-------LCGRMCHGYVLRNGLEGWDSICNTMIDM 384 (844)
Q Consensus 318 ~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 384 (844)
.|.+.+|++.+......- ..--..++......+...|-. +...+.+.-++......+...+-.+-
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-- 720 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-- 720 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--
Confidence 788999988887765421 111111222222222222222 22222222222222111111111111
Q ss_pred HHHcCCHHHHHHHHhhcC--------------------C---------------------CCcchHHHHHHHHHh----c
Q 003148 385 YMKCGKQEMACRIFDHMS--------------------N---------------------KTVVSWNSLIAGLIK----N 419 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~--------------------~---------------------~~~~~~~~li~~~~~----~ 419 (844)
+|..+|-... . .+..+|..++..|.+ .
T Consensus 721 --------dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 721 --------DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred --------HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 1111222111 0 123444444433332 1
Q ss_pred ----CCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHH
Q 003148 420 ----GDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAK 492 (844)
Q Consensus 420 ----g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 492 (844)
.+...|...+..... .+...||.|.-. ..-|.+.-|...|-+-... -+.+..+|..+--.|....+++.|.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhh
Confidence 112234444433222 345556555433 3334444444444333221 1223445555555555566666666
Q ss_pred HHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhc-----C---CCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003148 493 WIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRM-----E---KRDVSAWTAAIGAMAMEGNGEQAVELFNEM 564 (844)
Q Consensus 493 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 564 (844)
+.+.......+ .+..-|--..-.-...|+.-++..+|..- . -++..-|-.-..-..++|+.++-+...+.+
T Consensus 871 ~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 66665544321 12222211111122345555555555431 1 123444444444455666665544433332
Q ss_pred HHC--------CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH----HHHHHHhcCChHHHHHH
Q 003148 565 LRQ--------GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC----MVDLLGRAGLLGEALDL 631 (844)
Q Consensus 565 ~~~--------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~eA~~~ 631 (844)
-.. +-.|+. ..|...+....+.+.+.+|.+...+.+.-...+-+...|+. ...++...|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 211 123444 67777777788888888887777766543233444445553 34455667788877777
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH---HHHHHHHHcCCchHHHHHHHHHHh
Q 003148 632 IKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV---LLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 632 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+...+..-|..+-.+-++. .-.|+++++.+.|++++.+-.++....+ .++......+.-+.|....-..+.
T Consensus 1030 ~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 7666554455544444444 4457899999999999987655443223 334445566777777766655544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.1e-05 Score=79.17 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=82.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--h
Q 003148 110 IRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENC--LINFYG--E 185 (844)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~ 185 (844)
++-+..+|.+++|.....++...+ +-|...+..-+-+..+.+.++.|..+.. +.+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 456677889999999998888765 4455567777788888888888874432 2221 112222 244555 6
Q ss_pred cCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 003148 186 CGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGI 235 (844)
Q Consensus 186 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (844)
.+..++|...++....-+..+-..=...+.+.|++++|+++|+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 78899999988855554544555555677888999999999999877654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=92.95 Aligned_cols=230 Identities=12% Similarity=0.082 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 410 NSLIAGLIKNGDVESAREVFSEMPG--RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
+.|...|.+.|.+.+|.+.|+...+ +-+.+|-.+-..|.+..+++.|+.+|.+-.+. .|-.+|+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~---------- 294 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL---------- 294 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----------
Confidence 5688999999999999999997765 46778888999999999999999999887653 676666632
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEM 564 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 564 (844)
-+...+...++.++|.++++...+ .++.+...+..+|--.+++|-|+..++++
T Consensus 295 ------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 ------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 122223334556666666666553 24444555566677777888888888888
Q ss_pred HHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 003148 565 LRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN- 640 (844)
Q Consensus 565 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~- 640 (844)
++.|+. +...|..+.-.|...+++|-++.-|++... .--.|+ ..+|-.+.......|++.-|..-|+-. .-.|+
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 887743 445666777777777888888887777766 222343 456777777777778888888877765 33343
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
...++.|.-.-.+.|++++|...+..+....|+-...
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 4467777666677888888888888887777764433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00023 Score=78.15 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=55.7
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 003148 308 CNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMK 387 (844)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 387 (844)
|.-...-+-..|+.+.|+.+|....+ |-++.+..+-.|+.+.|-++-..- .|....--|..+|-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhh
Confidence 33333444456888888888877654 445566666778888877765442 244556678899999
Q ss_pred cCCHHHHHHHHhhcC
Q 003148 388 CGKQEMACRIFDHMS 402 (844)
Q Consensus 388 ~g~~~~A~~~f~~m~ 402 (844)
.|++.+|...|-+..
T Consensus 980 ~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-05 Score=87.33 Aligned_cols=421 Identities=14% Similarity=0.113 Sum_probs=239.7
Q ss_pred CChhHHHHHHH--HHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHc-C--------CCCCc
Q 003148 171 RDVFVENCLIN--FYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEE-G--------IKPNS 239 (844)
Q Consensus 171 ~~~~~~~~Li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~pd~ 239 (844)
-|..+..++++ .|..-|++|.|.+-.+-+. +.+.|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666665 4777888888877766554 3456888888888888877776666666432 1 1122
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-ceehHHHHHHHHHc
Q 003148 240 VTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRN-LVLCNTIMSNYVRL 318 (844)
Q Consensus 240 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~ 318 (844)
.+=..+.-.....|.+++|+.++...++.. .|=..|-..|.+++|.++-+.-..-. -.+|..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 232333333456788888888888877643 34456777888888888754322111 12344444445556
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHH
Q 003148 319 GLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIF 398 (844)
Q Consensus 319 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (844)
++.+.|++.|++-... -...+ -+|.- +.. ++-.++.+ ..|...|.--..-.-..|+++.|+.+|
T Consensus 872 ~Di~~AleyyEK~~~h----afev~-rmL~e-----~p~---~~e~Yv~~---~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVH----AFEVF-RMLKE-----YPK---QIEQYVRR---KRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ccHHHHHHHHHhcCCh----HHHHH-HHHHh-----ChH---HHHHHHHh---ccchHHHHHHHHHHhcccchHHHHHHH
Confidence 7788888877754211 00000 01100 000 11111111 123344444444455678899999988
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhH
Q 003148 399 DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV 478 (844)
Q Consensus 399 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 478 (844)
....+ |-+++...|-.|+.++|.++-++- .|......+...|-..|++.+|+.+|-+.+ +|...
T Consensus 936 ~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnA 999 (1416)
T KOG3617|consen 936 SSAKD-----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNA 999 (1416)
T ss_pred HHhhh-----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHH
Confidence 88765 777788888889999988888765 345555667888888999999999988764 34445
Q ss_pred HHHccccCchH---------------HHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---------
Q 003148 479 ASACGYLGALD---------------LAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--------- 534 (844)
Q Consensus 479 l~a~~~~~~~~---------------~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------- 534 (844)
|+.|-..+.-+ .+-.+|+ +.|... .--+..|-|.|.+.+|+++--+-.
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 55443332221 1122222 222111 123446777888777776532222
Q ss_pred -----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-
Q 003148 535 -----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ- 608 (844)
Q Consensus 535 -----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 608 (844)
..|+...+--..-+..+.++++|..++-...+ |...+..|...|. .--.++-+.|.-...-.|+
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCCccH
Confidence 12444555555566677778888877766654 3445555554432 1112222222211111122
Q ss_pred ---cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 003148 609 ---IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 609 ---~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 659 (844)
......+.+.+.++|.+..|-+-|.+++-+ . ..+.++.+.||.++
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--l----~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--L----SAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--H----HHHHHHHhcCCcce
Confidence 234556677788888888888888777533 1 12334455666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-05 Score=72.97 Aligned_cols=380 Identities=15% Similarity=0.089 Sum_probs=214.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q 003148 278 NALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLG 354 (844)
Q Consensus 278 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 354 (844)
++.+.-+.+..++++|++++..-.++ +....+.+..+|....++..|-+.+.++-.. .|...-|..
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl--------- 82 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL--------- 82 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH---------
Confidence 44444455666677777776655543 3344556666677777777777777766543 232222210
Q ss_pred ChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CcchHHHHHHH--HHhcCCHHHHHHHHhh
Q 003148 355 DLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNK-TVVSWNSLIAG--LIKNGDVESAREVFSE 431 (844)
Q Consensus 355 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~ 431 (844)
--...+-+.+.+.+|.++...|.+. +...-..-+.+ .-..+++..+..+.++
T Consensus 83 -------------------------Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 83 -------------------------YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred -------------------------HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh
Confidence 0112234456667777777776652 22111111222 2345677777777777
Q ss_pred CCC-CCccccccccccccccCChHHHHHHHHHHHh-CCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchh-
Q 003148 432 MPG-RDHISWNTMLGGLTQENMFEEAMELFRVMLS-ERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQ- 508 (844)
Q Consensus 432 m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~- 508 (844)
.+. .+..+.+.......+.|+++.|++-|+...+ .|..| ...|+..+.-+ +.++...|....+++++.|+...+.
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 774 4555556666666788888888888888776 44444 45565555433 4567777777777777766532111
Q ss_pred --------------------HHhHHh-------hhHHhcCCHHHHHHHHHhcCCC-----CHhHHHHHHHHHHhcCChHH
Q 003148 509 --------------------LATALV-------DMFARCGDPQRAMQVFRRMEKR-----DVSAWTAAIGAMAMEGNGEQ 556 (844)
Q Consensus 509 --------------------~~~~li-------~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~ 556 (844)
.-++++ ..+.+.|+.+.|.+.+..|+.+ |+++...+.-.- ..+++.+
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~ 294 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTE 294 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccc
Confidence 122333 3456889999999999999944 677766553322 2455656
Q ss_pred HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC-CCcchHHHHHHHHHh-cCChHHHHHHHH
Q 003148 557 AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVS-PQIVHYGCMVDLLGR-AGLLGEALDLIK 633 (844)
Q Consensus 557 A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~-~g~~~eA~~~~~ 633 (844)
..+-+.-+++ +.|=. .||..++-.|++..-++-|-.++.+-.. .-.+ .+...|+ |++.+.- .-..++|++-++
T Consensus 295 g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~ 370 (459)
T KOG4340|consen 295 GFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLD 370 (459)
T ss_pred cHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHH
Confidence 6665666666 56644 7999999999999999888887754221 0000 1122222 3344433 335566666555
Q ss_pred hCCCCCChHHHHHHH-HH-HHhcCCHHH----HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 634 SMPVEPNDVIWGSLL-AA-CQKHQNVDI----AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 634 ~m~~~p~~~~~~~ll-~~-~~~~g~~~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+.-.- ..-.+.+. .. -.++.+-++ +.+-+++.+++-- .....-+++|.+..++.-+.++|+.-.+-
T Consensus 371 ~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 371 GLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 441000 00111111 00 112222222 3334455554321 24456778899999999999999776653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-07 Score=91.85 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=105.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc---hHHHHHHHHHhcC
Q 003148 547 AMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV---HYGCMVDLLGRAG 623 (844)
Q Consensus 547 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g 623 (844)
.+...|++++|++++++- .+.......+..+.+.+++|.|.+.++.|.+ +..|.. ...+.+..+.-.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCch
Confidence 345567888887777542 2334555566677788888888888888876 444422 1223333333344
Q ss_pred ChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 003148 624 LLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW-TNVARVRLQ 700 (844)
Q Consensus 624 ~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 700 (844)
.+.+|.-+|+++ ...+++.+.+.+..+....|++++|+..++++++.+|+++.+...++-+....|+. +.+.+.+..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 789999999998 44567788888888889999999999999999999999999999999888999998 667788888
Q ss_pred HHhC
Q 003148 701 MKEQ 704 (844)
Q Consensus 701 m~~~ 704 (844)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-06 Score=77.45 Aligned_cols=188 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+-|++.+. +.|+. ...|....-+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCC
Confidence 333455556666666555555522 234555555556666666666666666555 45544 344555555555556
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
+++|...|+.....-...-...+|..++-+-.++|+.+.|.+.+++. ...|+ ..+.-.+.......|++-.|...+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 66666666655542111112345555555555666666666666554 33332 33444455555555566666655555
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
...-.+-......+.+.+-...|+-+.+.++=..+.
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555444444444444444555555555555544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5e-07 Score=82.65 Aligned_cols=122 Identities=8% Similarity=-0.009 Sum_probs=95.5
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-
Q 003148 558 VELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM- 635 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m- 635 (844)
..+|++.++ +.|+. +.....++...|++++|...|+.+.. +.|+ ...|..+..++.+.|++++|...|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666666 66765 44556677788888888888888876 5554 667788888888888888888888887
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 636 PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 636 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5555 56678888888888999999999999999999999888888777654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-05 Score=76.39 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHH---HHHHHhcCCHHHHHHHHhhCCCCCcccccc---ccccccccCCh
Q 003148 380 TMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSL---IAGLIKNGDVESAREVFSEMPGRDHISWNT---MLGGLTQENMF 453 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~ 453 (844)
.|...+...|++.+|+.-|....+-|+..|.++ ...|...|+...|..-+....+.-+..+.+ -...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 455555666777778777777777666666655 345666666666655555544322111111 12345677888
Q ss_pred HHHHHHHHHHHhCCcccChh----------------hHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhH
Q 003148 454 EEAMELFRVMLSERIKVDRV----------------TMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMF 517 (844)
Q Consensus 454 ~~A~~l~~~m~~~g~~p~~~----------------t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 517 (844)
++|..-|+..++.. |+.- .....+..+...|+...+......+++.. +.|...+..-.++|
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 88888887776642 2111 11222333344566666666666666543 44666777777778
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 003148 518 ARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 573 (844)
...|++..|+.-++... ..+....--+-..+.+-|+.+.++...++.++ +.||.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 88888887776665443 44556666666667777888888888887777 77776
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.6e-05 Score=81.10 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVD 617 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 617 (844)
.|......+...++.++|...+.+... +.|-. ..|......+...|..++|.+.|..... +.|+ +....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 355555566666666666666666555 44544 3344444556667777777777777665 6666 566777788
Q ss_pred HHHhcCChHHHHH--HHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 618 LLGRAGLLGEALD--LIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 618 ~~~~~g~~~eA~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
++.+.|+..-|.. ++..+ .+.| +...|..|.....+.|+.+.|-+.|.-++++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8888886655555 66666 6666 5779999999999999999999999999999988774
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-06 Score=86.23 Aligned_cols=178 Identities=13% Similarity=0.055 Sum_probs=111.0
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-CH---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK--R-DV---SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VF 576 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 576 (844)
...+-.+...|.+.|++++|...|+++.. | +. ..|..+..++.+.|++++|+..++++++ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 44455556666677777777777766552 2 11 3456666677777777777777777776 445432 34
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH
Q 003148 577 VGVLTACSHG--------GLVNQGWHLFRSMTDIHGVSPQIV-HYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL 647 (844)
Q Consensus 577 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 647 (844)
..+..++... |+.++|.+.|+.+.+ ..|+.. .+..+.. .+....... .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~----~~~~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKR----MDYLRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHH----HHHHHHHHH-----------HHHHHH
Confidence 4444444443 566667777776665 234321 1111111 110110000 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+...|+.++|...++++++..|+++ ..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999999877654 68889999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.3e-05 Score=80.36 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
-.++..|-+.|+++.|+++++.+ +-.|..+ .|..-...+...|++++|...++++.+++-.|-.....-++-..++.+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 35566677777777777777776 4445443 343444556667777777777777777776554333345555567777
Q ss_pred chHHHHHHHHHHhCC
Q 003148 691 WTNVARVRLQMKEQG 705 (844)
Q Consensus 691 ~~~a~~~~~~m~~~~ 705 (844)
.++|.++..+..+.|
T Consensus 455 i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREG 469 (700)
T ss_pred cHHHHHHHHHhhhcc
Confidence 777777777766655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.9e-05 Score=77.86 Aligned_cols=213 Identities=13% Similarity=0.090 Sum_probs=124.7
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHh----------HHHHHHHH
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVS----------AWTAAIGA 547 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~----------~~~~li~~ 547 (844)
+.++.-+..+++.+.+-+....... .+..-++.....|...|...+....-....+..-. +..-+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444555666666666555544 45555555666666666666555554443322211 12223446
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCChH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV-HYGCMVDLLGRAGLLG 626 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~ 626 (844)
|.+.++++.|+..|.+.+..-..||..+ +....+++....+...- +.|+.. -.-.-...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHH
Confidence 6667778888888877666444443322 12223333333333222 334321 1112255666777777
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...+.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..-+-++....+|++|.+.+....+.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777776 4445 45566666666677777777777777778888877777777777777777788777777666553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-05 Score=88.01 Aligned_cols=242 Identities=13% Similarity=0.118 Sum_probs=109.9
Q ss_pred HHHHHHcCCHHHHHHHHhhcCC--CCcc-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--c-ccccccccc-----cc
Q 003148 382 IDMYMKCGKQEMACRIFDHMSN--KTVV-SWNSLIAGLIKNGDVESAREVFSEMPGRDHI--S-WNTMLGGLT-----QE 450 (844)
Q Consensus 382 i~~y~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~-~~~li~~~~-----~~ 450 (844)
...+...|++++|+..++.-.. .|.. ........+.+.|+.++|..++..+..+|+. . |..+..+.. ..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3456778888888888877554 3333 3344566677777777777777777664433 2 222222221 11
Q ss_pred CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCch-HHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGAL-DLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
...+...++|+++...- |.......+.-.+.....+ ..+........+.|++ .+++.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455566666665432 3333332222222221122 2233344444555543 2444455555544333333333
Q ss_pred HHhcC------------------CCCHhHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 530 FRRME------------------KRDVSAW--TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 530 ~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+.... .|....| .-+...|...|++++|++++++.++ ..|.. ..|..-...+.+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 33221 0111122 2223334444555555555554444 34443 234444444445555
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
+++|.+.++...+ +.+. ...-+-.+.-+.|+|+.++|.+.+.
T Consensus 244 ~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 244 LKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555554444443 2221 2222333344444444444444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-05 Score=85.66 Aligned_cols=248 Identities=13% Similarity=0.108 Sum_probs=145.0
Q ss_pred HHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCcchH-HHHHHHHHhc-----
Q 003148 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--KTVVSW-NSLIAGLIKN----- 419 (844)
Q Consensus 348 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~~~~~----- 419 (844)
..+...|+.+.|.+.+....+. +.....+.......|.+.|+.++|..++..+.+ |+-..| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3456678888887777553332 344556667778888888888888888888775 333333 3333333111
Q ss_pred CCHHHHHHHHhhCCCCCccc--cccccccccccCChH-HHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHH
Q 003148 420 GDVESAREVFSEMPGRDHIS--WNTMLGGLTQENMFE-EAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYA 496 (844)
Q Consensus 420 g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 496 (844)
.+.+...++++++....+.+ ..-+.-.+.....+. .+...+..+...|+++ +|+.+-.-|......+...++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 24566677777665533221 111222222222333 3444556666777654 34444444444444444444444
Q ss_pred HHHHh----C----------CCCch--hHHhHHhhhHHhcCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHHH
Q 003148 497 YIEKN----G----------IHCDM--QLATALVDMFARCGDPQRAMQVFRRMEK--RD-VSAWTAAIGAMAMEGNGEQA 557 (844)
Q Consensus 497 ~~~~~----g----------~~~~~--~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 557 (844)
..... + -+|+. .++.-+...|-..|+.++|.+++++..+ |. +..|..-...+.+.|+.++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 43322 1 12333 2334556777788888888888887663 32 44666677778888888888
Q ss_pred HHHHHHHHHCCCCCChhHHH-HHHHHHhccCcHHHHHHHHHHhHh
Q 003148 558 VELFNEMLRQGIKPDSIVFV-GVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.+.++...+ +.+...-.| -....+.+.|++++|.+++....+
T Consensus 248 a~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 248 AEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 888888887 555443333 344456688888888888877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-05 Score=82.13 Aligned_cols=216 Identities=11% Similarity=0.082 Sum_probs=153.0
Q ss_pred ccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC-CHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG-DPQRAM 527 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~ 527 (844)
-.+++.+|...|+.....+ +..+.|..+...+++... .+..+++.-..++.+.| ++++++
T Consensus 32 y~~~~~~a~~~~ra~l~~~------------------e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASD------------------ERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred eCHHHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHH
Confidence 3456667777766655432 344566666666665432 23344554455555666 578899
Q ss_pred HHHHhcC---CCCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 528 QVFRRME---KRDVSAWTAAIGAMAMEGNG--EQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 528 ~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
..++++. .++...|+...-.+.+.|+. ++++.+++++++ ..|+. .+|.....++.+.|+++++++.++++++
T Consensus 93 ~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 93 DFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9888776 44566788766666666653 678999999998 67765 7888888888899999999999999988
Q ss_pred hcCCCCC-cchHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc----CCHHHHHHHHHHH
Q 003148 602 IHGVSPQ-IVHYGCMVDLLGRA---GLL----GEALDLIKSM-PVEP-NDVIWGSLLAACQKH----QNVDIAAYAAERI 667 (844)
Q Consensus 602 ~~~~~p~-~~~~~~li~~~~~~---g~~----~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~ 667 (844)
..|+ ...|+....++.+. |.. ++++++.+++ ...| |...|+-+.+.+... ++..+|...+.++
T Consensus 171 ---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 171 ---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred ---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 3343 56677666666554 323 4677777555 5566 567999999888774 3456788999999
Q ss_pred HhcCCCCCchHHHHHHHHHHc
Q 003148 668 TELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 668 ~~~~p~~~~~~~~l~~~~~~~ 688 (844)
++.+|+++-+...|+++|.+.
T Consensus 248 ~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcccCCcHHHHHHHHHHHHhh
Confidence 999999988999999999864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00017 Score=76.05 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=118.0
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEK--RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV 589 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 589 (844)
+...|.+.++.+.|...|.+... ++.. ...+....++++...+...- +.|+. .-...-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 45578888999999999987542 1211 11223445666666665555 55655 2233346678899999
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
.+|...+.++++ ..|+ ...|+...-+|.+.|.+.+|++=.+.. .+.|+.. .|.--..++....+++.|.+.+++
T Consensus 375 ~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 3355 788999999999999999998877766 5566543 555555666677899999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~ 687 (844)
.++.+|++..+...+...+..
T Consensus 452 ale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHH
Confidence 999999988777776665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=77.58 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=93.3
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 594 HLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.++++..+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555555 5565 3556788999999999999999998 5666 57799999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
|+++..+..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0024 Score=78.55 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=88.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--CCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchH-----HH
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQG--IKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHY-----GC 614 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~ 614 (844)
+...+...|++++|...+++..... ..|.. ..+..+.......|+.++|.+.++.+............+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 3444555577777776666654421 11211 233334445566777777777777665421111111111 01
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-C-CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCchHHHHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSMPV-E-PND----VIWGSLLAACQKHQNVDIAAYAAERITELDP------EKSGVHVLLS 682 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~ 682 (844)
....+...|+.+.|.+.+..... . ... ..+..+..++...|+.++|...++++++... .....+..++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 12334556777777777766521 1 111 1133455566677888888888887776421 1223566777
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 003148 683 NIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 683 ~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+|...|+.++|.+.+.+..+.
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888777664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.8e-06 Score=80.01 Aligned_cols=146 Identities=8% Similarity=0.098 Sum_probs=107.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG 623 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 623 (844)
+..|...|+++.+....+.+.. |. ..+...+..+++...++...+ ..|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 3456777777665443322211 11 012235666777777777766 3444 778888888899999
Q ss_pred ChHHHHHHHHhC-CCCC-ChHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 624 LLGEALDLIKSM-PVEP-NDVIWGSLLAAC-QKHQN--VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 624 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
++++|.+.+++. ...| +..+|..+..++ ...|+ .++|..+++++++.+|+++.++..|+..+.+.|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887 5666 456777777764 66676 589999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 003148 699 LQMKEQG 705 (844)
Q Consensus 699 ~~m~~~~ 705 (844)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9988753
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-07 Score=61.05 Aligned_cols=33 Identities=36% Similarity=0.579 Sum_probs=28.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 003148 168 GFDRDVFVENCLINFYGECGDIVDGRRVFDEMS 200 (844)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 200 (844)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=60.77 Aligned_cols=33 Identities=42% Similarity=0.654 Sum_probs=28.7
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 269 GMKANALMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 269 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888999999999999999988884
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.9e-05 Score=81.06 Aligned_cols=255 Identities=11% Similarity=0.005 Sum_probs=150.6
Q ss_pred ccccCChHHHHHHHHHHHhCCcccChh-hHHh---HHHHccccCchHHHHHHHHHHHHhCCCC-chhHHhHHhhhHHhcC
Q 003148 447 LTQENMFEEAMELFRVMLSERIKVDRV-TMVG---VASACGYLGALDLAKWIYAYIEKNGIHC-DMQLATALVDMFARCG 521 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~---ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g 521 (844)
+...|++++|.+.+++..+. .|+.. .+.. ........+..+.+.+.... .....| .......+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 44566777777777776654 34322 2221 11111223444444444433 111222 2334445566788899
Q ss_pred CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh--hHHHHHHHHHhccCcHHHHHHH
Q 003148 522 DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI-KPDS--IVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
++++|...+++.. ..+...+..+...|...|++++|+.++++...... .|+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998776 33466778888888999999999999998887321 1222 2355677788889999999999
Q ss_pred HHHhHhhcCCCCCcchH-H--HHHHHHHhcCChHHHHHH---HHhC-CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 596 FRSMTDIHGVSPQIVHY-G--CMVDLLGRAGLLGEALDL---IKSM-PVEPN---DVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 596 ~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
+++........+..... + .+...+...|....+... .... +..|+ .........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99876411111111111 1 233334444533332222 2111 11111 1222345556677889999999888
Q ss_pred HHHhcCC---------CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 666 RITELDP---------EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 666 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.+....- .........+.++...|++++|.+.+......+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8765221 123456778888999999999999998887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0012 Score=69.86 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHhC-CcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC-chhHHhHHhhhHHhcCCHHHHHHHH
Q 003148 453 FEEAMELFRVMLSE-RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC-DMQLATALVDMFARCGDPQRAMQVF 530 (844)
Q Consensus 453 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~ 530 (844)
.+.....++++... .+.|+ .+|...++..-+...++.|+.+|..+.+.+..+ ++.++++++.-|+ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 34445555555443 23343 456667777777788889999999988887766 8888999998776 57788888998
Q ss_pred HhcCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcC-
Q 003148 531 RRMEK--RD-VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHG- 604 (844)
Q Consensus 531 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 604 (844)
+.-.+ +| ..--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86552 23 333455666777778888888889888888777776 5788888888888888888888777766554
Q ss_pred -CCCCcchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 605 -VSPQIVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 605 -~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
.++...+-..+++.|.-.+....-..-++.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4444455566677777666554444444433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.4e-06 Score=84.48 Aligned_cols=154 Identities=14% Similarity=0.204 Sum_probs=101.7
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh----ccCcHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACS----HGGLVN 590 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 590 (844)
.+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...|. +...+..++. ..+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHH
Confidence 4456677777777776654 4455555567777788888888888888876 44443 3333444333 234678
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 003148 591 QGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNV-DIAAYAAERI 667 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 667 (844)
+|..+|+++.+. ..+++...+.+.-+....|++++|.+++++. ...| |..++..++..+...|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888887763 3456677777888888888888888888775 4445 445666677766777766 6677888888
Q ss_pred HhcCCCCC
Q 003148 668 TELDPEKS 675 (844)
Q Consensus 668 ~~~~p~~~ 675 (844)
....|+++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 88888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0019 Score=79.53 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=53.6
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCh-hHHHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDV-------SAWTAAIGAMAMEGNGEQAVELFNEMLRQ----GIKPDS-IVFVGVLTA 582 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a 582 (844)
..+...|+.+.|...+.....+.. ..+..+..++...|++++|..++++.... |..++. .+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334557778888777766553211 11334556677778888888888776652 222222 345555566
Q ss_pred HhccCcHHHHHHHHHHhHh
Q 003148 583 CSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~ 601 (844)
+...|+.++|...+.+..+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777766
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-05 Score=92.23 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=167.8
Q ss_pred CCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH
Q 003148 504 HCDMQLATALVDMFARCGDPQRAMQVFRRMEKR--------DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV 575 (844)
Q Consensus 504 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 575 (844)
+.+...|-..+......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+ .---...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 334566777777888899999999999987622 346899999998889988999999999998 3333467
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLLAAC 651 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~ 651 (844)
|..|+..|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-+.|.++++++ ..-|- .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 89999999999999999999999999777 55678999999999999999999999887 33343 33445555566
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.++|+.+.|..+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999988765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=71.77 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
.+..-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..+.++..++|+++..+..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444445677788999999999999987 5566 56689999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Q 003148 687 SAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLR 749 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 749 (844)
..|+.++|++-|+...... + .+|+..++..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 9999999999998877642 1 26777777776666655543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-05 Score=76.50 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=116.7
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHH
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 592 (844)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++.++ ..|+. ..|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456778888777655443322211 012235677888888888888 66766 6788888899999999999
Q ss_pred HHHHHHhHhhcCCCCC-cchHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQ-IVHYGCMVDL-LGRAGL--LGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
...|++..+ +.|+ ...+..+..+ |.+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887 5665 7778888886 467787 59999999998 6666 566888888889999999999999999
Q ss_pred HHhcCCCCCchHHHH
Q 003148 667 ITELDPEKSGVHVLL 681 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l 681 (844)
++++.|.+..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999988776554433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.9e-06 Score=85.87 Aligned_cols=214 Identities=14% Similarity=0.174 Sum_probs=160.9
Q ss_pred HHHHcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccccccccccccCChHHHH
Q 003148 384 MYMKCGKQEMACRIFDHMSNK---TVVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQENMFEEAM 457 (844)
Q Consensus 384 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~ 457 (844)
-+.+.|++.+|.-.|+..... +...|.-|.......++-..|...+++..+- |....-+|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788899998888887653 4568888988888888888888888776653 5556666777788899999999
Q ss_pred HHHHHHHhCCcc-----c---ChhhHHhHHHHccccCchHHHHHHH-HHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHH
Q 003148 458 ELFRVMLSERIK-----V---DRVTMVGVASACGYLGALDLAKWIY-AYIEKNGIHCDMQLATALVDMFARCGDPQRAMQ 528 (844)
Q Consensus 458 ~l~~~m~~~g~~-----p---~~~t~~~ll~a~~~~~~~~~a~~i~-~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 528 (844)
..++.-+....+ + +..+-.. ........+....++| +.....+..+|+.+...|.-.|--.|+++.|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653210 0 1000000 1122223344445554 445556666888889999999999999999999
Q ss_pred HHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 529 VFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 529 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.|+... ..|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|..+|-.+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999877 34788999999999999999999999999999 99998 4566777789999999999998877655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00014 Score=76.21 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH-HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT-ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMV 616 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 616 (844)
..|.-....+...|+.++|+..++.++. -.||...|..+.. .+...++.++|.+.++++.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 3344444455677999999999999988 6888877666554 78899999999999999988 6677 55666788
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 617 DLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
++|.+.|+..+|..++++. ..+-|+..|..|..+|...|+..++..+. +..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHH
Confidence 9999999999999999987 33447889999999999999988776653 4567889999999
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
.......+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99999888763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-05 Score=88.83 Aligned_cols=139 Identities=8% Similarity=-0.009 Sum_probs=117.5
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHH
Q 003148 536 RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYG 613 (844)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 613 (844)
.++..+-.|.....+.|++++|+.+++...+ +.||. .....+..++.+.+.+++|....++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577788888889999999999999999999 89998 5677788899999999999999999887 5676 66777
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
.+..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.++|..+|+++++...+....|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8888999999999999999998 34454 678999999999999999999999999987665544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-05 Score=78.57 Aligned_cols=180 Identities=16% Similarity=0.087 Sum_probs=126.0
Q ss_pred hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-CHh---HHHH
Q 003148 472 RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGDPQRAMQVFRRMEK--R-DVS---AWTA 543 (844)
Q Consensus 472 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~---~~~~ 543 (844)
...+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++.+ | +.. .|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3455666677888999999999999987765321 124567788999999999999999998863 2 222 4555
Q ss_pred HHHHHHhc--------CChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH
Q 003148 544 AIGAMAME--------GNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC 614 (844)
Q Consensus 544 li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 614 (844)
+..++.+. |+.++|++.|+++.+ ..|+..- ...+..... .. .... .....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~------~~~~---------~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LR------NRLA---------GKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HH------HHHH---------HHHHH
Confidence 56666654 788999999999998 6777632 221111100 00 0000 11235
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CC---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PV---EP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+.+.|.+.|++++|...+++. .. .| ....|..+..++...|+.++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677889999999999998887 22 33 245888899999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1e-05 Score=87.96 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=91.9
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHh
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACS 584 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 584 (844)
|...|..+.|......-++.|.++++....+--..|+.+ ...+++++++.+.|+.-.+ +.|-. .+|.....+..
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAAL 530 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHH
Confidence 333444444444333444555555544432211112111 1225677777777776666 55544 56666666666
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCC-CChHHHHHHHHHHHhcCCHHHHH
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVE-PNDVIWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~ 661 (844)
+.++++.|.+.|..-.. ..|+ .+.|+.+-.+|.+.|+..+|...++++ ... -+..+|-...-....-|+.++|.
T Consensus 531 qlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 77777777777776665 5565 566777777777777777777776666 222 23446666666666777777777
Q ss_pred HHHHHHHhcC
Q 003148 662 YAAERITELD 671 (844)
Q Consensus 662 ~~~~~~~~~~ 671 (844)
+++.+++++.
T Consensus 608 ~A~~rll~~~ 617 (777)
T KOG1128|consen 608 KAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhh
Confidence 7777777643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0019 Score=69.87 Aligned_cols=195 Identities=9% Similarity=-0.092 Sum_probs=96.8
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCCcccH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH---HH
Q 003148 105 MYNSLIRGYSCIGLGVEAISLYVELAGFGI-LPDKFTF-PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN---CL 179 (844)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~L 179 (844)
.|..+...+...|+++++...+.+...... .++.... ......+...|+++.+..+++..++.. +.|...++ .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444455555666665554444433211 1111111 111122345566777777777666653 33333333 12
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcc---cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCch
Q 003148 180 INFYGECGDIVDGRRVFDEMSERNVV---SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLE 256 (844)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 256 (844)
.......+..+.+.+.++.....+.. .+..+...+...|++++|...+++..+.. +.+...+..+-..+...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 22222344555555555542221221 22233345666777777777777776643 223334455555566666666
Q ss_pred HHHHHHHHHHHhCC-Ccch--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 257 LGDRVCAYIDELGM-KANA--LMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 257 ~a~~~~~~~~~~g~-~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
+|...+....+... .++. ..+..+...+...|+.++|..+|++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666655432 1222 234456666666777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.6e-05 Score=73.34 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=100.0
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHH
Q 003148 569 IKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGS 646 (844)
Q Consensus 569 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ 646 (844)
..|+......+-.++...|+-++...+...... ....|......++....+.|++.+|...|++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 455443225555667777777777777766543 12233444555778888888888888888887 44457778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+..+|-+.|+.++|...+.+++++.|+++.++..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888887776543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.9e-05 Score=76.80 Aligned_cols=183 Identities=11% Similarity=0.145 Sum_probs=135.7
Q ss_pred hhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc-
Q 003148 515 DMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEG-NGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL- 588 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 588 (844)
..+.+.+..++|..+...+.+ .+...|+.-...+...| +.++++..++++++ ..|+. .+|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCch
Confidence 334556778888888887763 35567877766777777 67999999999998 56665 456655555556665
Q ss_pred -HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc---CC----H
Q 003148 589 -VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH---QN----V 657 (844)
Q Consensus 589 -~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~ 657 (844)
.+++..+++++.+ ..|+ ...|+....++.+.|++++|++.++++ ...| |...|+.....+... |. .
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3678888988887 5565 678888888999999999999999998 4444 667888877666554 22 2
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHc----CCchHHHHHHHHHH
Q 003148 658 DIAAYAAERITELDPEKSGVHVLLSNIYASA----GKWTNVARVRLQMK 702 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~ 702 (844)
+.+.....++++++|+|.++|..+..++... ++..+|.++.....
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 4677788899999999999999999999773 34455666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.22 E-value=9e-06 Score=73.91 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=80.7
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
..|+ ......++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4444 345566777788888888888888876 4445 566788888888888999999999999999999998999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 003148 682 SNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999877764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00011 Score=70.79 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=87.7
Q ss_pred HhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++... ..|+. .+++.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 4444455555555555555433 23444555566666667777777777776666 44433 566666666667777
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCC-C-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVE-P-NDVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
.++|..-|.+..+ +.|+ ...++.|.-.|.-.|+++.|..++...-.. + |..+-..|.-+....|++++|+.+..
T Consensus 150 ~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777766666666 3333 445556666666666666666666665221 1 45555666666666666666666654
Q ss_pred H
Q 003148 666 R 666 (844)
Q Consensus 666 ~ 666 (844)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00017 Score=82.81 Aligned_cols=143 Identities=12% Similarity=0.070 Sum_probs=118.2
Q ss_pred CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HH
Q 003148 502 GIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KR-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FV 577 (844)
Q Consensus 502 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 577 (844)
.+..+...+-.|.+.....|..++|+.+++... .| +...+..+...+.+.+++++|+..+++.+. ..|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 345567788888899999999999999999887 34 466788899999999999999999999999 7898854 55
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHH
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLA 649 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~ 649 (844)
.+..++.+.|.+++|..+|+++.. -.|+ ...+..+..++-+.|+.++|...|++. ...|....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 666678899999999999999987 3344 778889999999999999999999998 34455555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=84.96 Aligned_cols=215 Identities=16% Similarity=0.176 Sum_probs=152.8
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-ccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN--------KTVVSWNSLIAGLIKNGDVESAREVFSEMPGR-D-HISWNTM 443 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~l 443 (844)
+...|-..|......++++.|++++++... .-...|.++++.-...|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344556666666677777777777776543 12246777777777777777777777766552 2 3456677
Q ss_pred cccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCC-CchhHHhHHhhhHHhcCC
Q 003148 444 LGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIH-CDMQLATALVDMFARCGD 522 (844)
Q Consensus 444 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~ 522 (844)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+...-+.|+.++.++.+.-.. -.+.+..-.+++-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77888888888888888888764 2344556667777777777777888888777665322 245566667788889999
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLV 589 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 589 (844)
.+.++.+|+... .+-...|+..|..-.++|+.+.+..+|++.+..++.|-. ..|.-.|.-=...|+-
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 999999999877 446789999999999999999999999999998888865 3444444433333443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-05 Score=81.40 Aligned_cols=194 Identities=14% Similarity=0.203 Sum_probs=106.4
Q ss_pred CCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003148 503 IHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA 582 (844)
Q Consensus 503 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 582 (844)
++|-...-..+.+.+.++|-...|..+|++. ..|-..|-.|...|+..+|.++..+-++ -+||..-|..++..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444445555666677777777777777654 3466666677777777777777666666 45666666666666
Q ss_pred HhccCcHHHHHHHHHHhHhhc-------------------------CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-
Q 003148 583 CSHGGLVNQGWHLFRSMTDIH-------------------------GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM- 635 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~-------------------------~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m- 635 (844)
.-..-.+++|+++++...... .+.|- ..+|-.+.-+..+.+++..|.+.|...
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 655555666666655443310 01121 233334444444455555555555544
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 636 PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 636 ~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
...||. ..||++-.+|.+.|+-.+|...+.++++-+-++...+.+..-+..+.|.|++|.+.+.++.+
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 444432 35555555555555555555555555555544444444444444555555555555555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-06 Score=54.85 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc
Q 003148 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNS 239 (844)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 239 (844)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=77.98 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=103.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
..+++..+...+++++|.++|+++.+ ..|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~---~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE---RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh---cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 45667777788999999999999987 2354 5556888888889999999999887 3344 56667766777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.++.+.|+.+++++.++.|++...|..|+.+|.+.|+|++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0012 Score=65.73 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=144.9
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccC
Q 003148 512 ALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA---IGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGG 587 (844)
Q Consensus 512 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g 587 (844)
-+...+...|.+.+|+.-|....+-|+..|.++ ...|...|+...|+.-+.+.++ ++||-.. -..-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 355556667889999999998888888877776 4568888999999999999999 8998743 333444678899
Q ss_pred cHHHHHHHHHHhHhhcCCCCC----cchHHH------------HHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHH
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQ----IVHYGC------------MVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLA 649 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~----~~~~~~------------li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~ 649 (844)
.+++|..-|+.+.+ -.|+ .+++.- .+.-+.-.|+...|++++..+ .+.|-.. .+..-..
T Consensus 121 ele~A~~DF~~vl~---~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQ---HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHh---cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 99999999999887 2332 222221 223355678999999999987 7777444 4444445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...|+...|+.-++.+-++..++...+.-++.++...|+.++++...+...+.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 6677899999999999999999999999999999999999999998877666553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00034 Score=73.35 Aligned_cols=124 Identities=21% Similarity=0.197 Sum_probs=108.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHh
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQK 653 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~ 653 (844)
....-.+...|..++|+..++.+.+ -.|+ +..+...++.+.+.++.++|.+.++++ ...|+ ...|-.+..++.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3344456678999999999999887 4565 556677889999999999999999998 67787 6788899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.|+..+|+..++..+.-+|+++..|..|+.+|...|+-.++..-+..+-.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.034 Score=62.92 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=112.8
Q ss_pred cHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 105 MYNSLIRGY--SCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 105 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
.|...+.++ .+.|+.++|..+++.....+.. |..|+..+-..|...+..+++..++++..+.. |+......+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFma 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHH
Confidence 455566654 4678888888887776655444 67778888888888888888888888887653 556677777778
Q ss_pred HHhcCChH----HHHHHHhhcCCCCcccHHHHHHHHHhC-CCch---------HHHHHHHHHHHcCCCC-CcchHHHHHH
Q 003148 183 YGECGDIV----DGRRVFDEMSERNVVSWTSLICACARR-DLPK---------EAVYLFFEMVEEGIKP-NSVTMVCVIS 247 (844)
Q Consensus 183 y~~~g~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~---------~A~~l~~~m~~~g~~p-d~~t~~~ll~ 247 (844)
|++-+++. .|.+++...+++--.-|+.+ +.+.+. ...+ -|...++.+.+.+-+. +..-..--+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 88776654 46667776666555556543 333322 1122 2333444444432111 1111111122
Q ss_pred HHHhcCCchHHHHHHH-HHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003148 248 ACAKLQNLELGDRVCA-YIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD 302 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 302 (844)
.+...|.+++|..++. ...+.-...+...-+--++++.+.+++.+-.++-.++..
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 2334566777777763 233332334555556667777777777666655555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=9e-06 Score=53.69 Aligned_cols=35 Identities=40% Similarity=0.719 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 573 (844)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=66.63 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=89.1
Q ss_pred HHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-C
Q 003148 560 LFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-P 636 (844)
Q Consensus 560 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 636 (844)
+|++.++ ..|+. .....+...+...|++++|.+.|+.+.+ ..| +...+..+...|.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 66665 4456666778888999999999988877 334 4677788888999999999999988877 4
Q ss_pred CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 637 VEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 637 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 455 46678888888899999999999999999999988653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=71.45 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=71.6
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 659 (844)
..+.+++++|+..|..+++ +.|. ..-|..-..+|.+.|.+++|.+-.+.. .+.|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4456677777777777776 5655 444555667777777777777777666 56665 3478888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
|++.|+++++++|++..+...|..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888887655555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=51.78 Aligned_cols=34 Identities=44% Similarity=0.753 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 003148 204 VVSWTSLICACARRDLPKEAVYLFFEMVEEGIKP 237 (844)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 237 (844)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999888887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=75.23 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=104.4
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcc
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHG 586 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 586 (844)
....+|+..+...++++.|..+|+++.+.+...+..|+..+...++-.+|++++++.++ ..|+. ..+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 33445666777788999999999999977777777788888888999999999999987 45654 4455555668889
Q ss_pred CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003148 587 GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEP 639 (844)
Q Consensus 587 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 639 (844)
++++.|..+.+++.+ ..|+ ..+|..|+..|...|++++|+..++.+|+.|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999988 6777 6699999999999999999999999997655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=76.07 Aligned_cols=218 Identities=11% Similarity=0.120 Sum_probs=143.7
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHH-ccccCchHHHHHHHHHHHHhCCCCchhHHhHHh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASA-CGYLGALDLAKWIYAYIEKNGIHCDMQLATALV 514 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 514 (844)
+...|..|+..|...+++++|.++.++..+ ..|+...+..++.. +.+.+....+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 445677888888889999999999886655 36666554433322 2222222222222 344
Q ss_pred hhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHH
Q 003148 515 DMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQ 591 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 591 (844)
+...+..++.....+...|. ..+......+..+|.+.|+.++|...++++++ +.|+. ...+.+...++.. ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHH
Confidence 44444444433333333333 12334667788889999999999999999999 56766 6788888888888 9999
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC---------------------ChHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP---------------------NDVIWGSLLA 649 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p---------------------~~~~~~~ll~ 649 (844)
|.+++.++... |....++.++.+++.++ ...| -..+|--+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99999888762 33333444555544444 2222 2334444556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 693 (844)
-|...++++++..+++.+++.+|.|..+..-++..|. +++.+
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 6778889999999999999999999888888887775 44444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0002 Score=76.46 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=49.8
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
.+...|++++|+++++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344555556666555555 3334 23455555555556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHh
Q 003148 696 RVRLQMKE 703 (844)
Q Consensus 696 ~~~~~m~~ 703 (844)
+.++...+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 66655554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.5e-05 Score=50.43 Aligned_cols=33 Identities=39% Similarity=0.694 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP 571 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 571 (844)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00028 Score=58.89 Aligned_cols=92 Identities=23% Similarity=0.229 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
+..++..+...|++++|.+.+++. ...|+ ...|..+...+...|+.++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999988876 44443 4677777778888899999999999999999988888899999999999
Q ss_pred CchHHHHHHHHHHh
Q 003148 690 KWTNVARVRLQMKE 703 (844)
Q Consensus 690 ~~~~a~~~~~~m~~ 703 (844)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998877654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=74.01 Aligned_cols=140 Identities=16% Similarity=0.060 Sum_probs=70.1
Q ss_pred CCCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcc--------CcHHHHHHHHHHh
Q 003148 534 EKRDVSAWTAAIGAMAM--EG---NGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHG--------GLVNQGWHLFRSM 599 (844)
Q Consensus 534 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m 599 (844)
...|...|...+.|... .+ ..++|+.+|++.++ ..||.. .+..+..++... +.+.++.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567777777776443 22 36689999999999 788873 444333322111 1122222222222
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
........+...|..+.-.....|++++|...++++ .+.|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 220011112234444444444445555555555554 4445544555555555555555555555555555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0056 Score=58.80 Aligned_cols=163 Identities=14% Similarity=0.183 Sum_probs=112.8
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA---IGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
++-+..-+|+.+.|...++.+..+-+-|.... ..-+-..|++++|+++++.+++.. |+. +++.--+.+.-..|.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCC
Confidence 33344456777777777776552212121111 112455788999999999998854 544 777766666677777
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC---CHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ---NVDIAAYA 663 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~ 663 (844)
.-+|++-+....+ .+..|.+.|.-+.++|...|+++.|.-.++++ -..| ++..+..+...+.-.| |++.+.+.
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788888877776 35677889999999999999999999888888 4455 4555566666544433 77888999
Q ss_pred HHHHHhcCCCCCchHH
Q 003148 664 AERITELDPEKSGVHV 679 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~ 679 (844)
+++++++.|.+...+.
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999996654444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.6e-05 Score=58.14 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG-KWTNVARVRLQMKE 703 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 703 (844)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988765
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00078 Score=61.83 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=60.2
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 659 (844)
.++.+.+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+.. ...||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555553222110 122223445555666666666666655 112332 233344555566667777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22223344566777777777777777777754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.8e-05 Score=62.91 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=55.3
Q ss_pred cCChHHHHHHHHhC-CCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH
Q 003148 622 AGLLGEALDLIKSM-PVEP---NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARV 697 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 697 (844)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777766 2223 445666677778888888888888887 777777766777778888888888888888
Q ss_pred HHH
Q 003148 698 RLQ 700 (844)
Q Consensus 698 ~~~ 700 (844)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.027 Score=57.43 Aligned_cols=249 Identities=20% Similarity=0.196 Sum_probs=164.0
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
.|++++|.+-|+.|... ...-..-+..+.-..-+.|..+.++++-+..-..-. .-.....+.++..+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHH
Confidence 46677777777777542 000112233333344567787888777766654432 1245667888889999999999999
Q ss_pred HHhcC-----CCCHh--HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHH
Q 003148 530 FRRME-----KRDVS--AWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 530 ~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
.+.-. ++|+. .-..|+.+-+. .-+...|...-.+..+ +.||-+ .-..-..++.+.|++.+|-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98654 44443 23334443322 3456677777777666 889874 445556689999999999999999
Q ss_pred hHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 599 MTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 599 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+-+ .+|.+..+. ...+.|.|+. +..-+++. .++|| .....+...+-...|++..|....+.+..+.|.
T Consensus 289 aWK---~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 289 AWK---AEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHh---cCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 987 566665543 2334566642 22222222 45665 445666677778889999999999999999997
Q ss_pred CCchHHHHHHHHHHc-CCchHHHHHHHHHHhCCCccCCcc
Q 003148 674 KSGVHVLLSNIYASA-GKWTNVARVRLQMKEQGIRKLPGS 712 (844)
Q Consensus 674 ~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~ 712 (844)
. ++|.+|+++-... |+-.+++.++.+..+. ..+|.+
T Consensus 362 e-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 362 E-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred h-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 6 6899999997554 9999888887766553 244543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0034 Score=60.68 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred HhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH-H
Q 003148 620 GRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA-R 696 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~ 696 (844)
...++..+|.-+|++| ...|+..+.+....+|...|++++|+.+++.++..+|+++.+...+.-.--..|+-.++. +
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 3345677788888888 367888888888888889999999999999999999999988888877777888876654 3
Q ss_pred HHHHHH
Q 003148 697 VRLQMK 702 (844)
Q Consensus 697 ~~~~m~ 702 (844)
.....+
T Consensus 264 ~l~QLk 269 (299)
T KOG3081|consen 264 NLSQLK 269 (299)
T ss_pred HHHHHH
Confidence 344443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=64.87 Aligned_cols=196 Identities=14% Similarity=0.071 Sum_probs=143.4
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH-HHHHHhcc
Q 003148 511 TALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVG-VLTACSHG 586 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~ 586 (844)
++.+.-+.+..++++|++++..-.+ ++......|...|-...++..|-..++++-. ..|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 3444445566778888887765543 3455667777788888888888888988887 6777655433 23456677
Q ss_pred CcHHHHHHHHHHhHhhcCCCCCcch--HHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 003148 587 GLVNQGWHLFRSMTDIHGVSPQIVH--YGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAA 664 (844)
Q Consensus 587 g~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 664 (844)
+.+.+|+++...|.. .|.... ...-.......|++..+..++++.+-+.+..+.+...-...+.|++|.|.+-|
T Consensus 92 ~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 888888888877754 122111 11112234567888889999999875556666666655567899999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcc
Q 003148 665 ERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGS 712 (844)
Q Consensus 665 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 712 (844)
+.+++..--+|..-..++-++.+.|+++.|.+....+.++|++..|..
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 999998877777778888899999999999999999999999887743
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.1e-05 Score=48.39 Aligned_cols=31 Identities=39% Similarity=0.507 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 003148 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGI 235 (844)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (844)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=69.64 Aligned_cols=89 Identities=22% Similarity=0.194 Sum_probs=78.9
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 003148 616 VDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 693 (844)
.+-+.+.+++++|+..+.++ .+.| |.+.|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35567889999999999998 7777 556666677789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003148 694 VARVRLQMKEQ 704 (844)
Q Consensus 694 a~~~~~~m~~~ 704 (844)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999877653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00089 Score=60.54 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=78.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 691 (844)
....-+...|++++|..+|+-+ -..| |..-|..|...|...+++++|...+..+..++++||..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444566799999999999877 3333 5667888988899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 003148 692 TNVARVRLQMKE 703 (844)
Q Consensus 692 ~~a~~~~~~m~~ 703 (844)
++|+..|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0019 Score=59.32 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHH
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCM 615 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l 615 (844)
..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.+ ....|. ....-.|
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 3344444 367777777777777773 3433 2233344566777888888888887776 222222 1233446
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
..++...|++++|+..++..+-.+ ....+......+...|+.++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677777888888888887653222 34455666667788888888888877653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00054 Score=60.41 Aligned_cols=93 Identities=16% Similarity=0.056 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK---SGVHVLLSN 683 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 683 (844)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|++++|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555666666666666555 22232 2244445555666666666666666666666654 334556666
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 003148 684 IYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 684 ~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0054 Score=58.88 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=124.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVL-TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLL 619 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 619 (844)
+..++-+....|+.+.|...++++... .|.+.-...+- .-+-..|++++|.++++...++. +.|..+|---+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 334455666789999999999998884 37663322222 23456789999999999998832 34466777777777
Q ss_pred HhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC---chHH
Q 003148 620 GRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK---WTNV 694 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~a 694 (844)
-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+|+++-+.|.++-.+..+++++...|- .+-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788877888777665 4556899999999999999999999999999999999999999999999877764 4456
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
++++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 67777766543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.22 Score=56.70 Aligned_cols=159 Identities=12% Similarity=0.062 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 540 AWTAAIGAMAMEGNGE---QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
+-|.|+..+.+.++.. +|+-+++.-+. ..|.. .+-..++..|+-.|-+..|.+.|..+-- ..+.-|..-|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-H
Confidence 3466778888877755 45555555554 34433 4556677788888888888888887754 34555532221 2
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHHcC
Q 003148 616 VDLLGRAGLLGEALDLIKSM-PV-EPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK----SGVHVLLSNIYASAG 689 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 689 (844)
...+...|++..|...++.. .+ .-+..----++.--.++|.+..-.++..---.+.-.. ..+-....+.....+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666666665544 10 0000001112233345666665544322111121111 112224556667778
Q ss_pred CchHHHHHHHHHH
Q 003148 690 KWTNVARVRLQMK 702 (844)
Q Consensus 690 ~~~~a~~~~~~m~ 702 (844)
+.++-.+.+..|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8887777777776
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.011 Score=68.99 Aligned_cols=172 Identities=10% Similarity=0.104 Sum_probs=121.5
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccccccccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN--KTV-VSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQE 450 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 450 (844)
+...+..|+..|...+++++|..+.+...+ |+. ..|-.+...+.+.++.+++..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 345567788888888888888888876554 333 3444444466666665554333 344444555
Q ss_pred CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVF 530 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 530 (844)
.++.-...+...|... .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5564444444555542 2344567778888889999999999999999888 66888899999999998 999999988
Q ss_pred HhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH
Q 003148 531 RRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV 575 (844)
Q Consensus 531 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 575 (844)
.+.. ..|...+++.++.+++.++.+ ..|+.+.
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~~d~d 204 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNSDDFD 204 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHh--cCcccch
Confidence 7653 347777788889999998888 6666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.4e-05 Score=47.35 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGI 569 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 569 (844)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=58.60 Aligned_cols=102 Identities=11% Similarity=0.010 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLA 649 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 649 (844)
+..+...+...|++++|.+.|+.+.+.+.-.+. ...+..+..++.+.|++++|.+.++++ ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455556666666666665542211111 234445666677777777777777665 22333 345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
++...|+.++|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7788888888888888888888877543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00097 Score=68.19 Aligned_cols=162 Identities=9% Similarity=0.050 Sum_probs=119.2
Q ss_pred hHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcch-----
Q 003148 539 SAWTAAI-GAMAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVH----- 611 (844)
Q Consensus 539 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----- 611 (844)
.+|.-+- ..+...|++++|...--..++ +.+... ....-..++...++.+.|...|++..+ +.|+-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHh
Confidence 4444442 345667899999888777776 444442 222222245567888999999988776 5555221
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 612 --------YGCMVDLLGRAGLLGEALDLIKSM-PVEPN-----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 612 --------~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
+.--.+...+.|++.+|.+.+.+. .+.|+ ...|.....+..+.|+.++|+.-.+++++++|.-...
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 222235567899999999999987 55554 4455555666778999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 678 HVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 678 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
|..-++.|...++|++|.+-+++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998887653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00082 Score=71.78 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=61.4
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 659 (844)
+...|++++|++.|+++.+ ..|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3344555555555555554 3333 344555556666666666666666665 4444 34466666667777777777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
|+..++++++++|+++.....+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77777777777777776666655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00022 Score=54.96 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888888888888877653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=61.53 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=84.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD--SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYG 613 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 613 (844)
....+..+...+...|++++|+..|++.++....|. ...+..+...+.+.|++++|..++++..+ ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566777777778888888888888876433322 24566677777778888888888877776 3443 44555
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 614 CMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666666655544333221 012577888999999999887 5555555555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0007 Score=64.01 Aligned_cols=94 Identities=14% Similarity=-0.084 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777888888888888877 33333 3478888889999999999999999999999999888888898
Q ss_pred HHH-------HcCCchHHHHHHHHHH
Q 003148 684 IYA-------SAGKWTNVARVRLQMK 702 (844)
Q Consensus 684 ~~~-------~~g~~~~a~~~~~~m~ 702 (844)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887766665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00098 Score=63.28 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
.+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666666677766666655 22222 346777778888889999999999999999998888888888888
Q ss_pred HHcCC
Q 003148 686 ASAGK 690 (844)
Q Consensus 686 ~~~g~ 690 (844)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.012 Score=57.06 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCC
Q 003148 558 VELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPV 637 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 637 (844)
-++.+.+.......|.+....-...|.+.|++++|....... -+.+....=+..+.|..+++-|.+.+++|.-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345556665545555455555556799999999999988652 2344555556778899999999999999943
Q ss_pred CCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 638 EPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 638 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
--+..+.+.|..++.+ .+.+..|.-+|+++-+.-|..+......+.++...|+|++|..+.+...++.
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3466677777777654 3467889999999999777777788889999999999999999999887753
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0006 Score=52.54 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=51.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999988 56674 56888899999999999999999999999999874
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00045 Score=53.80 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=44.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788889999999999999998888889999999999999999888776653
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.39 Score=51.62 Aligned_cols=210 Identities=12% Similarity=0.095 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC---CHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 003148 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFARCG---DPQRAMQVFRRME----KRDVSAWTAAIGAMAMEGNGEQAVELF 561 (844)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 561 (844)
+++..+++..+..-...+..+|.++.+.=-..- ..+.....+++.. ..-..+|-.++..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554443444555554443211111 1333333444333 222346777888777888889999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 003148 562 NEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PV 637 (844)
Q Consensus 562 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~ 637 (844)
.+..+.+..+-. ....+++. |.-.++..-|.++|+.-.+.+|-.| .--.+.++-+.+.++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999999988844 44555554 4456789999999998877565444 33456788899999999999999998 24
Q ss_pred CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 638 EPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS----GVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 638 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
.|| ..+|..++.--..-|+++...++-++....-|.+- ..-..+.+.|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 554 35999999999999999999998888776555211 12345556677777776555555444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=55.83 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=54.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 003148 538 VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD--SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGC 614 (844)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 614 (844)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|+.++|+..+++..+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44567777777888888888888888877322222 13677777788888888888888887776 3444 344455
Q ss_pred HHHHHH
Q 003148 615 MVDLLG 620 (844)
Q Consensus 615 li~~~~ 620 (844)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0058 Score=62.93 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA-CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998532 2233445544444 4446777779999999998544 45667888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.+.+.|+.+.|..+|++. ..-|.. .+|..++.--.++|+++....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 323333 4999999999999999999999999999988754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0025 Score=52.87 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
|..+...+...|++++|+..+++..+ ..|+. ..+..+...+...|++++|.++++...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555556666666666666555 33333 3344444444444555555555544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.002 Score=64.10 Aligned_cols=102 Identities=15% Similarity=0.028 Sum_probs=86.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh-cC--CHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 606 SPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK-HQ--NVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~-~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
+-|.+-|-.|...|.+.|+.++|..-|.+. .+.| +...+..+..++.. .| ...++..++++++.++|.|......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 344889999999999999999999999988 4555 56677777776543 22 5678999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCc
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 707 (844)
|+-.+...|++.+|...++.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00025 Score=46.00 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 003148 664 AERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.092 Score=57.04 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=134.5
Q ss_pred HHHHHHHHhcCCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCC
Q 003148 141 FPFVLNACTKSSAFGEGVQV--HGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRD 218 (844)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 218 (844)
|+..-++|.+..++.--+-+ ++.+.+.|-.|+... +...++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554433322 455666776677654 33456677889999988864 67
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 219 LPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFG 298 (844)
Q Consensus 219 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 298 (844)
....|+++|..|+-- -...-+...|..++-+.+...-.+- ..|+---.+-..++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 777888888777531 1112233333333333222211110 011111123345555666666666553
Q ss_pred hcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHH
Q 003148 299 ECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSIC 378 (844)
Q Consensus 299 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 378 (844)
..+|-.+-++++-+++-. .+..++..+-.-+.+...+..|.++|..+-..
T Consensus 727 -----------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 233434444444443322 13334444444444555666666666655332
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHH
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAME 458 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 458 (844)
.+++++....+++++|..+-++.++--...|-.-.+-++...++++|.+.| .+.|+..+|.+
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf------------------hkAGr~~EA~~ 838 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF------------------HKAGRQREAVQ 838 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH------------------HHhcchHHHHH
Confidence 467778888888888888888887743344455556666777777776654 45577778888
Q ss_pred HHHHHHhC
Q 003148 459 LFRVMLSE 466 (844)
Q Consensus 459 l~~~m~~~ 466 (844)
+++++...
T Consensus 839 vLeQLtnn 846 (1081)
T KOG1538|consen 839 VLEQLTNN 846 (1081)
T ss_pred HHHHhhhh
Confidence 87776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0012 Score=52.21 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 649 AACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 649 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..+.+.+++++|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788899999999999999999999999999999999999999999998887653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0099 Score=66.40 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=98.3
Q ss_pred CCCChhHHHHHHHHHhc--c---CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------CChHHHHHHHHh
Q 003148 569 IKPDSIVFVGVLTACSH--G---GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA--------GLLGEALDLIKS 634 (844)
Q Consensus 569 ~~p~~~t~~~ll~a~~~--~---g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~~~~~ 634 (844)
...|...|...+.+... . +..++|..+|+++.+ ..|+ ...|..+..+|... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45566788888887543 2 347799999999998 7888 45555554444322 234455555555
Q ss_pred C---C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M---P-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
. + ...+..++.++.-.....|+.++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3 2 223556777776667778999999999999999999 46799999999999999999999998887654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0078 Score=54.34 Aligned_cols=85 Identities=8% Similarity=-0.053 Sum_probs=35.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGR 621 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 621 (844)
+..-+.+.|++++|..+|+-+.. +.|.. .-|..|...|-..|++++|+..|..... +.|+ +..+-.+...|..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHH
Confidence 33334444444444444444444 44443 2233333333344444444444444443 2232 3333334444444
Q ss_pred cCChHHHHHHHH
Q 003148 622 AGLLGEALDLIK 633 (844)
Q Consensus 622 ~g~~~eA~~~~~ 633 (844)
.|+.+.|.+-|+
T Consensus 116 lG~~~~A~~aF~ 127 (157)
T PRK15363 116 CDNVCYAIKALK 127 (157)
T ss_pred cCCHHHHHHHHH
Confidence 444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00048 Score=53.65 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=31.1
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 621 RAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
..|++++|+++|+++ ...| +..++..+..+|.+.|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345555555555554 2233 344555555555555555666555555555555554444333
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0016 Score=53.27 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChH
Q 003148 551 EGNGEQAVELFNEMLRQGIKP---DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLG 626 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 626 (844)
.|+++.|+.+|+++.+ ..| +...+..+..++.+.|++++|..+++. .+ ..|+ ....-.+...|.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHH
Confidence 4566666666666666 233 223344455566666666666666655 22 1222 122223355555566666
Q ss_pred HHHHHHHh
Q 003148 627 EALDLIKS 634 (844)
Q Consensus 627 eA~~~~~~ 634 (844)
+|++.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.22 Score=51.10 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=51.9
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC----CCCCChH--HHHHHHHHH---Hhc
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPNDV--IWGSLLAAC---QKH 654 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~~~--~~~~ll~~~---~~~ 654 (844)
+.|..+.|+++-+.... ..|. .-.+...++..+..|+++.|+++++.- .+.||.. .--.|+.+- .-.
T Consensus 166 r~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 166 RLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred hcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 44555555554444432 3333 223344444555555555555555433 2233322 111222221 112
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
-+...|.....++.++.|+-...-+.-+..|.+.|+..++-.+++.+-+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 3444455555555555555544445555555555555555555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.096 Score=56.90 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=28.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP-VEPND 641 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~ 641 (844)
+.+...+.-|-++|.+|-. ...++++....++++||..+-++.| +.||+
T Consensus 757 lk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 3344455566666666543 2346666777777777777777763 44443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.59 Score=48.78 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=85.7
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 592 (844)
.|.-+...|+...|.++-.+..-||-.-|-..+.+++..+++++-..+... +-.++-|-..+.+|...|..++|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344455678888888888888888888888889999999988876654331 22347788888888888888888
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 003148 593 WHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQK 653 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~ 653 (844)
..+...+ .+..-+.+|.++|++.+|.+.--+.. |...+..+...|..
T Consensus 257 ~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 257 SKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCC
Confidence 8887652 22456788888888888877755442 55555544444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0049 Score=62.94 Aligned_cols=257 Identities=14% Similarity=0.048 Sum_probs=149.7
Q ss_pred ccccCChHHHHHHHHHHHhCCcc---cChhhHHhHHHHccccCchHHHHHHHHHH--HHh--CCC-CchhHHhHHhhhHH
Q 003148 447 LTQENMFEEAMELFRVMLSERIK---VDRVTMVGVASACGYLGALDLAKWIYAYI--EKN--GIH-CDMQLATALVDMFA 518 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~--~~~--g~~-~~~~~~~~li~~y~ 518 (844)
+++.|+....+.+|+..++.|.. .=...|..+-.|+..++++++|.++|..= ... |-. ........|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 45666677777777777665522 11223444555666667777777765431 111 100 01112222334444
Q ss_pred hcCCHHHHHHHHHhcC-------CC--CHhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH----
Q 003148 519 RCGDPQRAMQVFRRME-------KR--DVSAWTAAIGAMAMEGN--------------------GEQAVELFNEML---- 565 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~---- 565 (844)
-.|.+++|.-...+-. ++ ....+..+...|...|+ .+.|.+.|.+=+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666654433221 10 11233345555544332 233444444322
Q ss_pred HCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhH---hhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-----
Q 003148 566 RQGIKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMT---DIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----- 635 (844)
Q Consensus 566 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----- 635 (844)
..|-.- -...|..|.+.|.-.|++++|+..++.=. +.+|-... ...++.+.+.+.-.|+++.|.+.++..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 222111 12456677777777899999998876532 23554433 557788899999999999999988765
Q ss_pred CCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC--CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 636 PVE---PNDVIWGSLLAACQKHQNVDIAAYAAERITEL----DP--EKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 636 ~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.+. -......+|.+.|....+++.|+..+.+=+.+ +. ....++..|+++|...|.-++|..+.++-++
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 111 13446677888888888899998877665542 22 2345788999999999999999888776654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0015 Score=50.96 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=52.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQ-NVDIAAYAAERITELDP 672 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 672 (844)
...|..+...+.+.|++++|+..|++. .+.|+ ...|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 346777788888888888888888887 55564 558888888899999 79999999999999988
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.013 Score=50.92 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSM---PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPE---KSGVHVLLSNIYA 686 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 686 (844)
+..++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|..++++.++-.|+ +....+.++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566677777777777765 22221 235566777888888888888888888887777 5566677778888
Q ss_pred HcCCchHHHHHHHHH
Q 003148 687 SAGKWTNVARVRLQM 701 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m 701 (844)
..|+++||.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888876443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.11 Score=47.57 Aligned_cols=151 Identities=10% Similarity=0.016 Sum_probs=100.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
.+.=+++....-..+-.+ ..|....-..|..+....|+..||...|++... --+.-|....-.+..+....++..+|
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHH
Confidence 333444444443333333 566666666777888888888888888888765 22334455666677777778888888
Q ss_pred HHHHHhC-CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 629 LDLIKSM-PVEPN---DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 629 ~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
...+++. ...|+ +..--.+...+...|..+.|+..++.++.--|+- ..-...+..++++|+.+++..-+..+.+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 8888776 22221 2233445667888899999999999999887753 4455566778889988888765555444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.025 Score=51.71 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=91.4
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCc
Q 003148 602 IHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KSG 676 (844)
Q Consensus 602 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~ 676 (844)
+..+.|++.+--.|...+.+.|+..||...|++. .+.-|....-.+..+...-++...|...++.+.+.+|. .|.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 3456788888889999999999999999999988 45568888888999999999999999999999998884 667
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
....++.+|...|++++|+.-++...+.-
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 88899999999999999999999887653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0084 Score=60.54 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLS 682 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 682 (844)
.|..-+..+.+.|++++|...|+.. ...|+. ..+..+..++...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444455555567777777776666 333432 3555566677777888888888888887777653 3455667
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 003148 683 NIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 683 ~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+|...|++++|.++++...+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777788888888888777654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.81 Score=47.76 Aligned_cols=109 Identities=23% Similarity=0.279 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 408 SWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
+.+..|.-+...|+...|.++-.+..-+|-.-|-..+.+|+..++|++-.++... +-.++.|-.++.+|...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444455556666666666666666666777777777777777777766554321 1234677777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHh
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRR 532 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 532 (844)
..+|..+... + .+..-+.+|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777666554 1 124567889999999999776433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0056 Score=64.75 Aligned_cols=65 Identities=14% Similarity=-0.098 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV---HVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|+.+..+|...|++++|+..++++++++|++... |..++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35577777777777777777777777777777777643 777777777777777777777777664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=62.03 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCC-C-----CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003148 175 VENCLINFYGECGDIVDGRRVFDEMSE-R-----NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISA 248 (844)
Q Consensus 175 ~~~~Li~~y~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 248 (844)
....+++......+++++..++-+... | -..|..++|+.|.+.|..++++++++.=...|+-||.+||+.+++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 333344444444455555555544432 1 1224457777777777777777777777777888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 003148 249 CAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKC 287 (844)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 287 (844)
+.+.|++..|.++...|...+.-.+..++..-+..+.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888777777776666666665555555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.016 Score=62.12 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=81.1
Q ss_pred CCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC----CCccc
Q 003148 133 GILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMG--FDRDVFVENCLINFYGECGDIVDGRRVFDEMSE----RNVVS 206 (844)
Q Consensus 133 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~ 206 (844)
+.+.+......++..+....+++.+..++-+..... ...-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344555666777777777777777777666666542 222234455777777777777777777765432 77777
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 003148 207 WTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKL 252 (844)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 252 (844)
+|.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777776666777776666666544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.6 Score=49.03 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=67.2
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
.-+...|+..+|.++-.+..-+|-..|---+.+++..+++++-+++-+.+. ..+-|.-...+|.+.|+.+||..
T Consensus 692 ~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhh
Confidence 334556777788888777777777777777777777777776555444332 14455566777778888888877
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLI 632 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 632 (844)
|+.+... +.-.+.+|.+.|++.+|.++-
T Consensus 766 Yiprv~~----------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGG----------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCC----------hHHHHHHHHHhccHHHHHHHH
Confidence 7754422 114667777777777776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0052 Score=48.53 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=52.3
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
.+|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999999888 5666 45577778888899999999999999999999988655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.034 Score=48.41 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHH
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLG 620 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 620 (844)
+..++-..|+.++|+.+|++.++.|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998877653 5677888889999999999999998877432111 1122223445677
Q ss_pred hcCChHHHHHHHHh
Q 003148 621 RAGLLGEALDLIKS 634 (844)
Q Consensus 621 ~~g~~~eA~~~~~~ 634 (844)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888877654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.074 Score=55.01 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=72.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-CcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHH
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHG-GLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLL 619 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 619 (844)
+..|...|++..|-..+.+ +...|... |++++|.++|++..+.+..... ...+..+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4555555555555544444 44467777 8999999999988774432222 34566778889
Q ss_pred HhcCChHHHHHHHHhCC---CCCC-----hH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 620 GRAGLLGEALDLIKSMP---VEPN-----DV-IWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m~---~~p~-----~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.+.|++++|.++|++.. ...+ .. .+-..+-.+...||...|...+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 99999999999998871 1111 11 111122234557899999999999999988543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0035 Score=43.66 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
.+|..+..++...|+.++|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888999999999999999999999999999988887764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.03 Score=53.07 Aligned_cols=118 Identities=17% Similarity=0.252 Sum_probs=83.1
Q ss_pred ccChhhHHhHHHHcc-----ccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHH
Q 003148 469 KVDRVTMVGVASACG-----YLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTA 543 (844)
Q Consensus 469 ~p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~ 543 (844)
..|..+|..++..+. +.|.++-....+..|.+.|++.|..+|+.|++.+=| |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 456677777777664 457788888889999999999999999999998875 3322 11222211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc-HHHHHHHHHHhHh
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGL-VNQGWHLFRSMTD 601 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~ 601 (844)
-. -...+.+-|++++++|...|+-||..|+..|++.+.+.+. +.+.++..--|.+
T Consensus 112 -F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 -FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 1124556789999999999999999999999999887665 3344444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.023 Score=58.86 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKV 721 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 721 (844)
.++..|...|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 356667777788999999999999999999999999999999999999999999999999874
Q ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 003148 722 HEFTSGDESHPEMNNISSMLREMNCRLRD 750 (844)
Q Consensus 722 ~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 750 (844)
.|..+.|...|..+.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 45556666666666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.26 Score=49.46 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=103.5
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCC--C-HhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhc
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKR--D-VSA---WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSH 585 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~--~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 585 (844)
...+.+.|++++|.+.|+.+... + ... .-.++.+|-+.+++++|+..|++.++ ..|+. +.+...+.+.++
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHhh
Confidence 33455678888888888887632 2 111 23355667788888888888888888 55554 344444443331
Q ss_pred --cC---------------c---HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHH-
Q 003148 586 --GG---------------L---VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIW- 644 (844)
Q Consensus 586 --~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~- 644 (844)
.+ + ..+|...|+.+++.+ |+ +.-..+|...+..+. +...-
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~---~~la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK---DRLAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH---HHHHHH
Confidence 10 1 234445555555422 33 222334444333321 00000
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 645 -GSLLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 645 -~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
-....-|.+.|++.-|..-++.+++--|+.+ .+...+..+|...|..++|.++......
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1233447788999999999999999888754 4667888999999999999998876643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.4 Score=46.47 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=58.5
Q ss_pred HHHHHHhCCCCC----ChHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 628 ALDLIKSMPVEP----NDVIWGSLLAA--CQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 628 A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
-+.++++.++.| +...-|.|..| +..+|++.++.-...=+.++.| ++.+|.++|-.+....+++||..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345566666665 33456666666 4679999999988888889999 7889999999999999999999999654
Q ss_pred H
Q 003148 702 K 702 (844)
Q Consensus 702 ~ 702 (844)
.
T Consensus 522 P 522 (549)
T PF07079_consen 522 P 522 (549)
T ss_pred C
Confidence 3
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.02 Score=48.92 Aligned_cols=89 Identities=18% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHHcCC
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS----GVHVLLSNIYASAGK 690 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 690 (844)
-+++..|++++|++.|.+. .+-| +...||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4577889999999999887 4444 677899999999999999999999999999754433 368889999999999
Q ss_pred chHHHHHHHHHHhCC
Q 003148 691 WTNVARVRLQMKEQG 705 (844)
Q Consensus 691 ~~~a~~~~~~m~~~~ 705 (844)
-|.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999999988776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.8 Score=48.06 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=12.5
Q ss_pred cccccCChHHHHHHHHHHHh
Q 003148 446 GLTQENMFEEAMELFRVMLS 465 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~ 465 (844)
.+.+.|++-+|.+++.+|.+
T Consensus 932 ~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 932 KDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhhhcccchhHHHHHHHHhH
Confidence 34456666667777777744
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.38 Score=50.65 Aligned_cols=160 Identities=19% Similarity=0.133 Sum_probs=105.8
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCC---CH----hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003148 512 ALVDMFARCGDPQRAMQVFRRMEKR---DV----SAWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 512 ~li~~y~k~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 581 (844)
.++-.|....+++...++++.+... ++ ..-....-++-+ .|+.++|+.++..++...-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444578888888888888888743 11 111223344555 7899999999999777666777788877766
Q ss_pred HHhc---------cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChH----HHHHHH---Hh-----CCCCC-
Q 003148 582 ACSH---------GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLG----EALDLI---KS-----MPVEP- 639 (844)
Q Consensus 582 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----eA~~~~---~~-----m~~~p- 639 (844)
.|-. ....++|+..|.+.-+ +.|+..+--.++.++..+|... +..++- .. -...+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 3357788888876644 6677555445555666666422 222222 11 11223
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 640 -NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 640 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
|--.+.+++.++.-.||.+.|.+++++++.+.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44455788899999999999999999999998754
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.029 Score=46.96 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=67.4
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCChhH
Q 003148 105 MYNSLIRGYSCIGLGVEAISLYVELAGFGI-LPDKFTFPFVLNACTKSS--------AFGEGVQVHGAIVKMGFDRDVFV 175 (844)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 175 (844)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777777999999999999999999 899999999999987643 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 003148 176 ENCLINFYGE 185 (844)
Q Consensus 176 ~~~Li~~y~~ 185 (844)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.2 Score=44.00 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=143.3
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRME-----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 581 (844)
..........+...+.+..+...+.... ......+..+...+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4566677778888888888888887654 33455677777778888889999999999888433331 22222223
Q ss_pred -HHhccCcHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--hHHHHHHHHHHHh
Q 003148 582 -ACSHGGLVNQGWHLFRSMTDIHGVSP----QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN--DVIWGSLLAACQK 653 (844)
Q Consensus 582 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~ 653 (844)
++...|.++++...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 78889999999999998854 333 2334444445567788999999998887 44444 5677888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.++.+.|...+..+++..|.....+..++..+...|.++++...+....+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999986666777777777778899999888777664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.14 Score=54.71 Aligned_cols=158 Identities=9% Similarity=0.112 Sum_probs=104.2
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCChh-HHHHHHHHHh---------ccCcHHHHHHHHHHhH
Q 003148 539 SAW--TAAIGAMAME-----GNGEQAVELFNEMLR-QGIKPDSI-VFVGVLTACS---------HGGLVNQGWHLFRSMT 600 (844)
Q Consensus 539 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 600 (844)
..| ..++.|.... -..+.|+.+|.+.+. +.+.|+.. .|..+...+. ......+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 4455554431 134678889999882 22788764 3333322211 1234566777777776
Q ss_pred hhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 601 DIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 601 ~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
+ +.|+ ......+..+++-.|+++.|..+|++. .+.||. .+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 6 4444 556666777778888899999999988 677864 477777777788899999999999999999977655
Q ss_pred HHHHH--HHHHHcCCchHHHHHHHH
Q 003148 678 HVLLS--NIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 678 ~~~l~--~~~~~~g~~~~a~~~~~~ 700 (844)
-+.-. ++|... ..++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 54433 345544 45667766643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=47.21 Aligned_cols=79 Identities=20% Similarity=0.135 Sum_probs=64.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhcC--------CchHHHHHHHHHHHhCCCcchhHHH
Q 003148 208 TSLICACARRDLPKEAVYLFFEMVEEGI-KPNSVTMVCVISACAKLQ--------NLELGDRVCAYIDELGMKANALMVN 278 (844)
Q Consensus 208 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 278 (844)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 899999999999887653 2345678888899999999999999
Q ss_pred HHHHHHHh
Q 003148 279 ALVDMYMK 286 (844)
Q Consensus 279 ~Li~~y~~ 286 (844)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.03 Score=53.06 Aligned_cols=97 Identities=20% Similarity=0.348 Sum_probs=70.9
Q ss_pred HHHHHhc--CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-------------
Q 003148 527 MQVFRRM--EKRDVSAWTAAIGAMAME-----GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHG------------- 586 (844)
Q Consensus 527 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 586 (844)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445544 355666677777666543 66676777788888888888888888888766442
Q ss_pred ---CcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 587 ---GLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 587 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
.+.+-|+.++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234568888999987 8999999999999988887764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=2.3 Score=47.19 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHH
Q 003148 381 MIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELF 460 (844)
Q Consensus 381 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 460 (844)
.++.|.+..++++-+.+-..+++ +....-.|.+++.+.|.-++|.+.|-+-..|. +-+..+...++|.+|.++-
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443 33334455556666666666655554433321 1233455566677777666
Q ss_pred HHH
Q 003148 461 RVM 463 (844)
Q Consensus 461 ~~m 463 (844)
+..
T Consensus 902 q~~ 904 (1189)
T KOG2041|consen 902 QRF 904 (1189)
T ss_pred Hhc
Confidence 554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.14 Score=53.01 Aligned_cols=107 Identities=9% Similarity=0.060 Sum_probs=67.7
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHhC-----C-CCCC--hHHHHHHHHHHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA-GLLGEALDLIKSM-----P-VEPN--DVIWGSLLAACQ 652 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m-----~-~~p~--~~~~~~ll~~~~ 652 (844)
.|...|++..|-..+.. +..+|... |++++|.+.+++. . -.+. ..++..+...+.
T Consensus 103 ~y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 45555555555555444 44566666 7888888887776 1 1111 235666777788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 653 KHQNVDIAAYAAERITELDPEKS-------GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.|++++|...+++.....-+++ ..+...+-++...|+...|.+.++.....
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999987433222 13345555677889999999999887754
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.65 Score=48.34 Aligned_cols=145 Identities=15% Similarity=0.088 Sum_probs=93.8
Q ss_pred cccCchHHHHHHHHHHHHhCCCCchhHHhHHhh--hHHhcCCHHHHHHHHHhcCCCCHh---------------HHHHHH
Q 003148 483 GYLGALDLAKWIYAYIEKNGIHCDMQLATALVD--MFARCGDPQRAMQVFRRMEKRDVS---------------AWTAAI 545 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~--~y~k~g~~~~A~~~~~~~~~~~~~---------------~~~~li 545 (844)
...++.+.+.++-..+.+..-. ..+..++. ++--.++.+.|...|++...-|.. .|.-=.
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 5567777887776666654321 12222222 233457788888888877633221 233333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDS-----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLL 619 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 619 (844)
.-..++|++.+|.+.|.+.+. +.|+. ..|.....+..+.|+.++|+.--+...+ +.|. +..|-.-..++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCH 331 (486)
T ss_pred hhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHH
Confidence 445678999999999999987 56654 4466666677889999999998888766 5444 33333334455
Q ss_pred HhcCChHHHHHHHHhC
Q 003148 620 GRAGLLGEALDLIKSM 635 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m 635 (844)
.-.++|++|.+-+++.
T Consensus 332 l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567888888888876
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.14 E-value=2.3 Score=45.05 Aligned_cols=457 Identities=12% Similarity=0.061 Sum_probs=225.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHhhcCCC-CcccHHHHHHHH--HhCCCc
Q 003148 150 KSSAFGEGVQVHGAIVKMGFDRD------VFVENCLINFYGECGDIVDGRRVFDEMSER-NVVSWTSLICAC--ARRDLP 220 (844)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~ 220 (844)
+.+++.++..+|.++.+.- ..+ ....+.++++|.-. +++.-.....+..+. ....|-.+..+. .+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 4566667777776666543 111 23455666776543 233333333333221 123455555443 467788
Q ss_pred hHHHHHHHHHHHc--CCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCC----cchhHHHHHHH
Q 003148 221 KEAVYLFFEMVEE--GIKP------------NSVTMVCVISACAKLQNLELGDRVCAYIDELGMK----ANALMVNALVD 282 (844)
Q Consensus 221 ~~A~~l~~~m~~~--g~~p------------d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~Li~ 282 (844)
.+|++.+....+. +-.| |-+.=+..+.++...|.+.+|+.++..++..=++ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888887776654 3222 1122244566777889999999999888766444 78889999888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc--CChhhHH
Q 003148 283 MYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQL--GDLLCGR 360 (844)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~ 360 (844)
++++.=-++- -+.+...=..-|--||..|.+.=+.-++. .=..+.|...-+..++....-. ..+.--.
T Consensus 176 mlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 176 MLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred HHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 8877522221 11111112234566666665432211110 0001222222222222221111 1111122
Q ss_pred HHHHHHHHhCCCchh-hHHHHHHHHHHHcCCHHHHHHHHhhcC--------CCCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 003148 361 MCHGYVLRNGLEGWD-SICNTMIDMYMKCGKQEMACRIFDHMS--------NKTVVSWNSLIAGLIKNGDVESAREVFSE 431 (844)
Q Consensus 361 ~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 431 (844)
+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-+.+. +.=+.++..++....+.++...|...+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 223222333333332 223334444433 3334333333322 12334666777777777777777766655
Q ss_pred CCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCch-hHH
Q 003148 432 MPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDM-QLA 510 (844)
Q Consensus 432 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~ 510 (844)
+..-|+..|- .+..--..+.++.|... |...++. +..=..++..+....+..-. ++|
T Consensus 324 L~~ldp~~sv--------s~Kllls~~~lq~Iv~~----DD~~~Tk----------lr~yL~lwe~~qs~DiDrqQLvh~ 381 (549)
T PF07079_consen 324 LKILDPRISV--------SEKLLLSPKVLQDIVCE----DDESYTK----------LRDYLNLWEEIQSYDIDRQQLVHY 381 (549)
T ss_pred HHhcCCcchh--------hhhhhcCHHHHHHHHhc----chHHHHH----------HHHHHHHHHHHHhhcccHHHHHHH
Confidence 4432322220 01111112233333321 2222211 11112222333222222111 000
Q ss_pred -hHHhhhHHhcCC-HHHHHHHHHhcC---CCCHhHHHHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCChhH---
Q 003148 511 -TALVDMFARCGD-PQRAMQVFRRME---KRDVSAWTAAI----GAMAME---GNGEQAVELFNEMLRQGIKPDSIV--- 575 (844)
Q Consensus 511 -~~li~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t--- 575 (844)
---..-+-+.|. -++|.++++.+. .-|...-|... .+|.+. ....+-+.+-+-+.+.|+.|-.+.
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 011122344555 677788877665 34554444322 123221 123334444444556787775432
Q ss_pred -HHHHHHH--HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH
Q 003148 576 -FVGVLTA--CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL 647 (844)
Q Consensus 576 -~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 647 (844)
-+.+..| +...|++.++..+-.-+.+ +.|++.+|..++-.+....+++||.+++.+.| |+..+|++-
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 3333333 3467888888887777766 88999999888888888889999999999885 566666653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.048 Score=55.13 Aligned_cols=92 Identities=11% Similarity=-0.035 Sum_probs=55.4
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNV 657 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~ 657 (844)
...|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+++ ...|+ ...|..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445555555555555552211110 124445666666666666666666665 22222 33455556667788899
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 003148 658 DIAAYAAERITELDPEKS 675 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~ 675 (844)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999998888764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.084 Score=54.39 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=60.4
Q ss_pred HHhHHHHccccCchHHHHHHHHHHHHhC-CCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHh
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIEKNG-IHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAM 550 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 550 (844)
|..++..+-+.+.++.++.+|..+.+.+ ...++.+..+++..+ -.++.+.|.++|+... ..+...|...+.-+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4444555555555666666666655332 122333333333221 1344444666666554 3455556666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.|+.+.|..+|++.+.. .|.. ..|...+.-=.+.|+++....+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666553 2222 2455555544555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=3.5 Score=46.45 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=89.8
Q ss_pred CCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH
Q 003148 568 GIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL 647 (844)
Q Consensus 568 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 647 (844)
|..-...|.+-.+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-+++. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 3334445666677778889999999988776643 888888888899999999999999888772 24556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
..+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.+.--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 88999999999998886654322 25678899999999998876443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.2 Score=48.55 Aligned_cols=136 Identities=12% Similarity=0.142 Sum_probs=90.0
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCc-----hhHHhHHh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCD-----MQLATALV 514 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-----~~~~~~li 514 (844)
-+.++..+...|.+.-.+.++.+.++....-+......+.+.--+.|+.+.+...++...+..-..| ..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455666666777777777888877765455666667777777778888888888887765433333 33333333
Q ss_pred hhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFV 577 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 577 (844)
-.|.-++++..|...|.+++. .|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 446667788888888887773 3455555544444556888888888888888 566654433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.19 Score=50.30 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=71.2
Q ss_pred CCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC---ChHHHHHHHHhC-CCCCChH-
Q 003148 570 KPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG---LLGEALDLIKSM-PVEPNDV- 642 (844)
Q Consensus 570 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g---~~~eA~~~~~~m-~~~p~~~- 642 (844)
.|+. ..|..|..+|...|+.+.|..-|....+ +.|+ ...+..+..++..+. .-.++.++|+++ ..+|+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 4544 6777777777777777777777777766 4443 455556666554433 345778888887 6667554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
...-|..++...|++.+|...++++++..|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 444455578889999999999999998877654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.11 Score=55.32 Aligned_cols=117 Identities=7% Similarity=0.017 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGR---------AGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 466888899999844458888 5566655544321 22345677777766 5555 5666666666777888
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++.|...++++..++|+.+..+...+++..-.|+.++|.+..++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.4 Score=43.67 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=74.2
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH-HHHHH
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRME-----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF-VGVLT 581 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 581 (844)
.++..+++.-.+..-++.|+.+|-+.. .+++..++++|.-++ .|+..-|..+|+--.. .-||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 344444554445555555555555443 234444555554443 3445555555555444 34444332 23333
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcC
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQ 655 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 655 (844)
-+...++-..|+.+|+..+++ +..+ ...|..||+-=..-|++..+..+=++| ..-|...+...+.+-|....
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 444556666666666654431 2222 346666676667778887777776666 34455444444445555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.014 Score=46.75 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITEL----DPEK---SGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+++.+...+...|++++|+..+++++++ .+++ ..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777777888888888888877753 2222 34677888889999999999888877653
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1 Score=43.87 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=99.6
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCC--CCHhH--------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEK--RDVSA--------WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGV 579 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 579 (844)
+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.++++.++....-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 34555555544444444444443322 22223 345556666677777888889998885444455667778
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH-----HHHHHhcCChHHHHHHHHhCC-CCC-ChHHHHHHHHHHH
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM-----VDLLGRAGLLGEALDLIKSMP-VEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~~~~ 652 (844)
.+.-.+.|+.+.|..+|++..+..+ +.+....+.+ ...|.-+.++.+|...+.+.+ ..| |...-|.-.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999998776432 2332233333 334555667777777777763 233 3333333332333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003148 653 KHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
-.|+...|.+..+.+++..|...
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccc
Confidence 45777888888888888777644
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.14 Score=46.83 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=70.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVS--PQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 660 (844)
....|+.+.+...++.+...+.-. |+... ..-.....+.++++ -..+...++..+...|+.++|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 344566777777777766644211 22111 11122222333332 123556677778889999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 661 AYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
...+++++..+|-+...|..+..+|...|+..+|.++++.++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998865
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.016 Score=46.40 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-------P-VEPN-DVIWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
.|+.+...|.+.|++++|++.+++. + -.|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444445555555555555544443 1 1122 346666777777788888888887777654
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.23 Score=53.08 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=94.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh---H
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL---G 626 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~ 626 (844)
+..+.++-+++-++.++ +.||..+-..++ +--.+..+.++.+++++..+... . .|.+.... .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----H-------hhchhhhhhccc
Confidence 45667777888888888 889886654444 33345568899999988876110 0 01111100 0
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 627 EALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 627 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-.+...|...+...+.+.++..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111211122233444455777778899999999999999987774 4457788999999999999999999887654
Q ss_pred CCccCCccc
Q 003148 705 GIRKLPGSS 713 (844)
Q Consensus 705 ~~~~~~~~s 713 (844)
...|....+
T Consensus 325 ~lpkSAti~ 333 (539)
T PF04184_consen 325 SLPKSATIC 333 (539)
T ss_pred cCCchHHHH
Confidence 444444333
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.51 E-value=4 Score=43.12 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 521 GDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQG-IKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
|+++.-.+++-.-..+=...|...+..-.+..-.+.|..+|-+..+.| +.++...+.+.+.-++ .|+...|..+|+.-
T Consensus 380 ~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelG 458 (660)
T COG5107 380 NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELG 458 (660)
T ss_pred CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHH
Confidence 445444443333233446678888888888888999999999999999 5566677887776554 57888999999877
Q ss_pred HhhcCCCCCcchH-HHHHHHHHhcCChHHHHHHHHhC--CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 600 TDIHGVSPQIVHY-GCMVDLLGRAGLLGEALDLIKSM--PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 600 ~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
... -||...| .-..+-+.+-++-+.|..+|++. .+..+ ..+|..++.--..-|++..+..+-+++.+.-|+.
T Consensus 459 l~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 459 LLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 662 3554443 34567778899999999999966 23323 4589999998899999999999999999999986
Q ss_pred CchHH
Q 003148 675 SGVHV 679 (844)
Q Consensus 675 ~~~~~ 679 (844)
...-+
T Consensus 536 n~~ev 540 (660)
T COG5107 536 NLIEV 540 (660)
T ss_pred hHHHH
Confidence 43333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.1 Score=53.69 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=84.1
Q ss_pred HHhHHHHccccCchHHHHHHHHHHH----HhCCC-CchhHHhHHhhhHHhcCCHHHHHHHHHhcC-------CCC--HhH
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIE----KNGIH-CDMQLATALVDMFARCGDPQRAMQVFRRME-------KRD--VSA 540 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~--~~~ 540 (844)
|..+-..+.-+|+++.+...|+.-. +.|-. .....++.|.++|.-.|+++.|.+.++... .+. ..+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555678888887776432 22321 123455667788888889998888877543 332 345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLR----QG-IKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
..+|...|.-..++++|+.++.+=+. .+ ..-....+.+|..++...|.-++|..+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66788888888888899888765332 11 112336788999999999999999887766544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=3.6 Score=41.29 Aligned_cols=62 Identities=11% Similarity=-0.079 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCccc----HHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 003148 105 MYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFT----FPFVLNACTKSSAFGEGVQVHGAIVKMG 168 (844)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g 168 (844)
.+-.....+.+.|++++|++.|+.+...- |+... .-.+..++-+.++++.|...+++.++.-
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33344555677888888888888887643 33321 1233455667777777777777777664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=3.2 Score=40.70 Aligned_cols=218 Identities=19% Similarity=0.131 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHHHhCCccc-ChhhHHhHHHHccccCchHHHHHHHHHHHHh-CCCCchhHHhHHhhhHHhcCCHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKV-DRVTMVGVASACGYLGALDLAKWIYAYIEKN-GIHCDMQLATALVDMFARCGDPQRAMQ 528 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~ 528 (844)
+....+...+.......... ...............+.+..+...+...... ........+..+...+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444555555544432211 2344444555555666666666666555542 334455566667777778888889998
Q ss_pred HHHhcCC--CC-HhHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 529 VFRRMEK--RD-VSAWTAAIG-AMAMEGNGEQAVELFNEMLRQGIKP----DSIVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 529 ~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
.+..... ++ ...+..... .+...|+.+.|...|.+... ..| ....+......+...+..+++...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887764 22 223333344 78899999999999999966 444 22445555555778899999999999998
Q ss_pred hhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 601 DIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 601 ~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+ ..++ ...+..+...+...+++++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7 3333 567788888999999999999999887 45555 455666666666777899999999999999887
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=43.57 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSG---VHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 696 (844)
..-|.+.|.+.-|..-++.+++.-|+.+. +...++.+|.+.|..+.+..
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 44577889999999999999999887653 45678888999998885443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.48 Score=49.45 Aligned_cols=137 Identities=10% Similarity=0.038 Sum_probs=92.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 625 (844)
+.|.+.|++..|...|++.+. .-+ +...-+.++...... .....+..+.-.|.+.+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~--~l~-----------~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVS--FLE-----------YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHH--Hhh-----------ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 456677777777777777665 111 111111122222111 2233566677788888899
Q ss_pred HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH-HHHHHHHH
Q 003148 626 GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV-ARVRLQMK 702 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 702 (844)
.+|++.-++. ..+| |.-....=..+|...|+++.|+..++++++++|+|-.+..-|+.+-.+.....+. .++|..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988888876 5555 4555556677889999999999999999999999988888887776666655544 77888886
Q ss_pred hC
Q 003148 703 EQ 704 (844)
Q Consensus 703 ~~ 704 (844)
.+
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 54
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.83 Score=46.63 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCh---hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cch
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLR-QGIKPDS---IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVH 611 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 611 (844)
+|-.+..++.+.-++.+++.+-+.-.. .|..|.. ....++..|....+.++++++.|+...+...-..| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554443332 2333321 22233444555566788888888877662222222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCc-
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-------PVEPNDVIWG-----SLLAACQKHQNVDIAAYAAERITEL--DPEKSG- 676 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~- 676 (844)
|..|...|++..++++|.-+..++ +++--...|. .+.-+++..|.+-.|.+..+++.++ ...|-.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777888888888877766554443 3331122222 3345677788888888777777653 222322
Q ss_pred ---hHHHHHHHHHHcCCchHHHHHHHH
Q 003148 677 ---VHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 677 ---~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
....++++|...|+.|.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 334678888888887776655543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.2 Score=43.27 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
.+-.....+.+.|++++|++.|+++... -|+. .....++.++.+.|++++|...++...+.+.-.|... +...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHH
Confidence 3444555677788889999999888874 3332 3455667788888888888888888887554444421 1111
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------------hH
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG-----------------VH 678 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~ 678 (844)
..+.+...... ..+ .. ....+...+|...++.+++.-|+++- .-
T Consensus 84 ~~g~~~~~~~~---~~~---~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIP---GIL---RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHH---HHH----T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc---cch---hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 11111100000 000 00 11122344555566666666665531 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..++..|.+.|.|..|..-++.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35688899999999999999888764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.31 Score=43.40 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=49.9
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcC
Q 003148 618 LLGRAGLLGEALDLIKSM----PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG---VHVLLSNIYASAG 689 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g 689 (844)
...+.|++++|.+.|+.+ |..| ...+--.|+.++.+.|++++|...+++.++++|.++. ++...+-++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345677888888888777 3333 2335556778888999999999999999999988764 3344444444444
Q ss_pred C
Q 003148 690 K 690 (844)
Q Consensus 690 ~ 690 (844)
.
T Consensus 99 ~ 99 (142)
T PF13512_consen 99 E 99 (142)
T ss_pred h
Confidence 3
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.6 Score=37.85 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=76.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
.-.|..++..++..+...+. +..-++-++--....-+-+-..+.++..-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34567777777777766521 11222222211111222233344444443322222 24444444
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 003148 629 LDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 629 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 707 (844)
..-+-.++. +.......+.+...+|+-++-.+++..+.+-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444422 33344556677888999999889999888766667789999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.79 Score=49.06 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=42.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
+...|+.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|.+.|+.++|+..++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777777777777777777777766 566643 366667777777777777777776665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.62 E-value=9 Score=42.39 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=126.2
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 581 (844)
++..+|..-++.-.+.|+.+...-+|++..-+- ...|--.+.-....|+.+-|..++....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 356678888888888999999999999887442 23455555555555888888887777666433333333333333
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHH---HHHHhC-CCCCChHHHHHHHH-----HH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEAL---DLIKSM-PVEPNDVIWGSLLA-----AC 651 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~ 651 (844)
.+-..|+.+.|..+++...+++ |+ +..-.--+.+..|.|..+.+. +++... +.+-+..+...+.- -+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4667899999999999998843 66 333344567788999999888 665554 22223333333322 23
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
...++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 456889999999999999999999999999888766653
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.068 Score=34.51 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888899999999999999999998863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.099 Score=33.65 Aligned_cols=33 Identities=30% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357777788888899999999999999888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.27 Score=43.25 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHh--------------HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSM--------------TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---- 635 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---- 635 (844)
.++.+++-++++.|+++....+.+.. .....+.|+.....+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34445555555555555554444332 111233344444555555555555555555554433
Q ss_pred CCCCChHHHHHHHHHH
Q 003148 636 PVEPNDVIWGSLLAAC 651 (844)
Q Consensus 636 ~~~p~~~~~~~ll~~~ 651 (844)
+++-+..+|..|+.-+
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3333344555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.7 Score=39.34 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHhCCCCCChHHHHHHHHHH
Q 003148 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA-GLLGEALDLIKSMPVEPNDVIWGSLLAAC 651 (844)
Q Consensus 573 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~ll~~~ 651 (844)
......++..|.+.+.++++..++.++.. |...++.+... ++.+.|.+++++-. +...|..++..|
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 33444455566666666666655554422 22233333333 56666666666531 445666665554
Q ss_pred H
Q 003148 652 Q 652 (844)
Q Consensus 652 ~ 652 (844)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 3
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.5 Score=40.98 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhCC-----C--CCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCchH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSMP-----V--EPNDV-IWGSLLAACQKHQNVDIAAYAAERITE----LDPEKSGVH 678 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m~-----~--~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 678 (844)
.|.....+|.|..+++||-..|.+-. + -|+.. .+-+.+-.+....|+..|++.++..-+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444556667777777666665541 1 11211 222333333344567777777766554 344555555
Q ss_pred HHHHHHHHHcCCchHHHHHH
Q 003148 679 VLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~ 698 (844)
..|...| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5555544 566666666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.1 Score=45.96 Aligned_cols=53 Identities=8% Similarity=0.138 Sum_probs=45.4
Q ss_pred CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 003148 567 QGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLL 619 (844)
Q Consensus 567 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 619 (844)
....|+..+..+++.+|+..|++..|.++.+...+.|+++.+...|..|+.--
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999888888888777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.4 Score=44.56 Aligned_cols=111 Identities=12% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH----HHhccCcHHHHH
Q 003148 521 GDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT----ACSHGGLVNQGW 593 (844)
Q Consensus 521 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~ 593 (844)
|+..+|...++++. ..|..+|+---.+|.-+|+.+.-...+++.+-. -.||...|..+-. ++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 44444444444443 234445555455555555555555555544431 1333322222111 122344555555
Q ss_pred HHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 594 HLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
+.-++..+ +.|. .-.-.++...+-..|+..|+.+++.+-
T Consensus 196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 44444433 2221 112223444444455555555554443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.42 Score=46.93 Aligned_cols=100 Identities=24% Similarity=0.314 Sum_probs=80.4
Q ss_pred HHHHHHHhcC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----------
Q 003148 525 RAMQVFRRME--KRDVSAWTAAIGAMAME-----GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG---------- 587 (844)
Q Consensus 525 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 587 (844)
..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 77888999998888765 556666777889999999999999999998776532
Q ss_pred ------cHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh
Q 003148 588 ------LVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 588 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 625 (844)
+-+=++.++++|.. +|+.||-++-..|+++++|.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22347889999988 99999999999999999998853
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.82 E-value=5.3 Score=40.21 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=76.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
......|+..+|..+|+...+ ..|+. ..-..+..++...|+++.|..++..+..... .........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 345566777777777777776 34433 4455566666777777777777766543110 0111112233455555555
Q ss_pred hHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHcCC
Q 003148 625 LGEALDLIKSMPVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELD--PEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 625 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 690 (844)
..+...+..+..-.| |...-..|...+...|+.+.|...+=.++..+ -++...--.|..++.-.|.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 555555555554445 33344455555666666666665555554432 2344455555555555553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.34 Score=45.06 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=69.6
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 617 DLLGRAGLLGEALDLIKSM-P-VEP-----NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
+-+.+.|++++|..-+..+ . ++| ..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4466778888888777765 2 222 13344444556678899999999999999999998888899999999999
Q ss_pred CchHHHHHHHHHHhC
Q 003148 690 KWTNVARVRLQMKEQ 704 (844)
Q Consensus 690 ~~~~a~~~~~~m~~~ 704 (844)
++++|.+-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.4 Score=47.46 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred hcCChHHHHHHHHhC-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHHcCC
Q 003148 621 RAGLLGEALDLIKSM-------PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK---SGVHVLLSNIYASAGK 690 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 690 (844)
+.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|++ |..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 345555555555544 122344333 4556666677777777776666655543 3456666777777777
Q ss_pred chHHHHHHHHHHhC
Q 003148 691 WTNVARVRLQMKEQ 704 (844)
Q Consensus 691 ~~~a~~~~~~m~~~ 704 (844)
-++|..+++...++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.3 Score=39.45 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=59.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKP--DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA 622 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 622 (844)
.....+.|++++|.+.|+.+...=..+ ....-..++.++...|++++|...+++.++.+.-.|+ ..|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 334455677777777777776631111 1134455666677777777777777777663333333 2344333333322
Q ss_pred CChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 623 GLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 623 g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
...+ ..|..+ ..+-| .+....|...++++++.-|++.
T Consensus 96 ~~~~---~~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDE---GSLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhh---hHHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2211 111111 11111 1235678888888888888764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.42 E-value=18 Score=41.43 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChH
Q 003148 275 LMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAR 322 (844)
Q Consensus 275 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 322 (844)
.++...|+.+.-.|++++|-.+.-.|...+..-|--.+..+...++..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 455566666666666666666666666656555655555555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.9 Score=43.26 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=86.6
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH---HHHHHhcCCH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL---LAACQKHQNV 657 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l---l~~~~~~g~~ 657 (844)
.....|+..++...|+.... ..|+ ...-..|+..|...|+.++|..++..+|.+-...-|..+ +....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 45678899999999998877 3343 556677899999999999999999999765444444442 2222222222
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 658 DIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+. ..+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 2345556789999999999999999999999999877666554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.5 Score=36.54 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChH
Q 003148 243 VCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAR 322 (844)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 322 (844)
..++..+...+........++.+.+.+ ..+....+.++..|++.+ .+...+.++. ..+......++..+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 344555555555555555666555554 245566677777776653 2333344332 122333333555555555555
Q ss_pred HHHHHHHHH
Q 003148 323 EALAILDEM 331 (844)
Q Consensus 323 ~A~~l~~~m 331 (844)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.56 Score=42.90 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCCcc
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD----IHGVSPQIV 610 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 610 (844)
..++..+...|++++|+.+.++++. ..|-. ..+..++.++...|+..+|.++|+.+.+ +.|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3344455556666666666666666 44433 4566666666666666666666655432 245555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.75 E-value=23 Score=40.92 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=70.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHH----HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 003148 178 CLINFYGECGDIVDGRRVFDEMSERNVVSWTSLI----CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQ 253 (844)
Q Consensus 178 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 253 (844)
.-|++..+...++.|..+-..-.- |...-..+. +-+.+.|++++|...|-+-+.. +.| ..+|.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 345566666666667666654332 111222222 3345678888888888776532 222 33455555555
Q ss_pred CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 254 NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
.+..--.+++.+.+.|+. +..--+.|+++|.|.++.+.-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555556667777777764 34445678889999988888888776655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.74 E-value=23 Score=40.90 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 003148 106 YNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACT----KSSAFGEGVQVHGAIVKMGFDRDVFVENCLIN 181 (844)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 181 (844)
-..-|..+.+...+.-|+.+.+.- + .|..+...+.+.|+ +.|++++|..-+-+.+ |+-... .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH----HHHH
Confidence 445667777778888887765442 2 23334444444443 5778888776654444 221111 2344
Q ss_pred HHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHH
Q 003148 182 FYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELG 258 (844)
Q Consensus 182 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 258 (844)
-|....++..--..++.+.+ .+...-+.|+.+|.+-++.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44444444444445554443 233345667788888888777666555433 2221 22355667777777777766
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003148 259 DRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD 302 (844)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 302 (844)
..+-....+ +..+...+ +-..|++++|.+.+..++-
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 654433221 23333333 3356789999999988874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.59 Score=42.66 Aligned_cols=82 Identities=11% Similarity=-0.009 Sum_probs=41.7
Q ss_pred hcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 003148 519 RCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
..|++++|..+|+-+. .-|..-|..|...+...+++++|+..|......+ .-|...+......+...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4566666666665443 2234445555555555666666666665554422 11223333444445555555555555
Q ss_pred HHHhHh
Q 003148 596 FRSMTD 601 (844)
Q Consensus 596 ~~~m~~ 601 (844)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=5.4 Score=37.98 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=91.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 003148 538 VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMV 616 (844)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 616 (844)
...||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+-|...-+ -.|+.. |.+|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DP-fR~L- 171 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDP-FRSL- 171 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCCh-HHHH-
Confidence 45677777777788888888888888887 56654 3444444455567888888776665544 233321 2211
Q ss_pred HHHH--hcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHH
Q 003148 617 DLLG--RAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK-------SGVHVLLSNIYAS 687 (844)
Q Consensus 617 ~~~~--~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 687 (844)
.+|. +.-+..+|..-+.+--.+.|..-|...+-.+.-- ++. -+..++++.+-..++ ..+|.-|+.-|..
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2232 2334556654443321233555566655444321 111 112333333322232 2578899999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 003148 688 AGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 688 ~g~~~~a~~~~~~m~~~ 704 (844)
.|..++|..+|+.....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999887654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=11 Score=37.27 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHH
Q 003148 538 VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG 613 (844)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 613 (844)
+..|-.=+..-.+.|++++|.+.|+.+..+ .|. ..+...++-++.+.+++++|+...++..+.++-.|++. |.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HH
Confidence 344444455556778888888888888863 232 24566666677788888888888888887666666643 33
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----------------
Q 003148 614 CMVDLLGRAGLLGEALDLIKSMP-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS----------------- 675 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----------------- 675 (844)
..+.+++ .|...+ ...|.. -...|...++.+++.-|++.
T Consensus 111 ~YlkgLs----------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 111 YYLKGLS----------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred HHHHHHH----------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHH
Confidence 3344443 111110 000111 11233344444444444432
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.=..+++.|.+.|.|.-|..-++.|.+.
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 23346788899999999999999999875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.8 Score=47.40 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=81.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPD--SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLG 626 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 626 (844)
...|+++++.++.+.-. +-|. ..-...++.-+.+.|..+.|+++-+.-.. --++..+.|+++
T Consensus 272 v~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 34566776665554111 1111 23355666666677888887776543222 346667889999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 627 EALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 627 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.|.++.++.. +...|..|......+|+++.|+++++++ .-+..|+-+|...|+-+.-.++-+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9988877653 6778999999999999999999888875 346677778888888877766666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=17 Score=41.53 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=82.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGIKPN---SVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKC 287 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 287 (844)
|.-+.+.+.+++|++..+.-. |..|- .......|..+...|+++.|-...-.|... +..-|---+.-++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 455678889999998776543 33332 223455666676777777766655554322 222222223333333
Q ss_pred CCHHHHHHHHHhcCCC----CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHH
Q 003148 288 GAVDTAKQLFGECKDR----NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCH 363 (844)
Q Consensus 288 g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 363 (844)
+.... ++.-++.. +...|..++..+.. .+ ..-|.+.+.. ..++...-..++++- .
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~------------~ 495 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISAT------------E 495 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhc------------c
Confidence 32221 11122221 23457777777766 22 2223333221 111211111111110 0
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCc
Q 003148 364 GYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTV 406 (844)
Q Consensus 364 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~ 406 (844)
..+.+. .-+..+.-.|+..|...+++++|..++-...++++
T Consensus 496 ~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 496 PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 111110 11122334489999999999999999988887544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.3 Score=44.02 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=47.4
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-hHHHHHHHHHHHhcCCHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-DVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~ 659 (844)
.|++.+|..-|...++.|.-.+- ...+--|...+...|++++|...|..+ |-.|- +..+--|.......|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555555553311111 223334556666666666666665554 22221 2334444455566677777
Q ss_pred HHHHHHHHHhcCCCCC
Q 003148 660 AAYAAERITELDPEKS 675 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~ 675 (844)
|...++++.+--|+.+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 7777777777777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.2 Score=45.12 Aligned_cols=159 Identities=8% Similarity=-0.026 Sum_probs=115.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH----HHhcCCh
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL----LGRAGLL 625 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~----~~~~g~~ 625 (844)
-+|+..+|-..++++++. .+-|...+.-.=.+|...|+.+.-...++++.. ...||...|+.+=.+ +..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998883 344557888888899999999999999988875 346777666655444 4589999
Q ss_pred HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHHcCCchHHHHHHH
Q 003148 626 GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK----SGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
++|++.-++. .+.| |.-.-.++.......|+..+|.++.++--..-.+. .-.|-..+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999987 6665 33344566667788899999999877654322211 1234566667888899999999998
Q ss_pred HHHhCCCccCCc
Q 003148 700 QMKEQGIRKLPG 711 (844)
Q Consensus 700 ~m~~~~~~~~~~ 711 (844)
.-.-+.+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.82 E-value=14 Score=36.48 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=108.2
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---H---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRMEKRD---V---SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVF 576 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~ 576 (844)
|-...|+.-++ -.+.|++++|.+.|+.+..+. . .+--.++-++-+.+++++|+..+++.+. .-|++ +-|
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhH
Confidence 33445555444 346899999999999998432 2 2334456677889999999999999888 44443 344
Q ss_pred HHHHHHHhc---c----CcHHHHHH---HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHH--H
Q 003148 577 VGVLTACSH---G----GLVNQGWH---LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVI--W 644 (844)
Q Consensus 577 ~~ll~a~~~---~----g~~~~a~~---~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~ 644 (844)
..-|.+.+. . .+...+.+ -|+.+++++ |+.. --.+|..-+.... |... =
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~E 170 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHE 170 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHH
Confidence 444444432 1 22333333 333333322 3311 1112222221110 1111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSG---VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+...-|.+.|...-|..-++.+++--|+.+. .+..+..+|...|..++|.+..+-+...
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 13345678889999999999999987666544 4567778899999999999988877654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.80 E-value=4.9 Score=44.75 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=69.2
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCCcchHHH-HHHHHHhcCChHHHHHHHHhCC-CC-----CChHHHHHHHHHHHhcCCHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQIVHYGC-MVDLLGRAGLLGEALDLIKSMP-VE-----PNDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g~~~eA~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~ 658 (844)
....+.+.++++.+.+. -|+...|.. -..++...|++++|++.|+++- .+ -....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34556666666666652 355333332 2344555667777777776541 01 12223334555566777888
Q ss_pred HHHHHHHHHHhcCCCCCchH-HHHHHHHHHcCCc-------hHHHHHHHHHHhC
Q 003148 659 IAAYAAERITELDPEKSGVH-VLLSNIYASAGKW-------TNVARVRLQMKEQ 704 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~m~~~ 704 (844)
+|...+.++.+.+.-....| ...+-.|...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88888888888666544444 4556667788888 7777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.77 E-value=30 Score=41.73 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=54.4
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 003148 187 GDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYID 266 (844)
Q Consensus 187 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 266 (844)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34555555444443 223444444444555666665553 46666666666555431 11
Q ss_pred HhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHH
Q 003148 267 ELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEML 332 (844)
Q Consensus 267 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 332 (844)
+. ..+.--.-+|.++|+.++|.+.+ ...|+|.+|+.+..+|.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLS 992 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhc
Confidence 11 11222344677888888887654 45677888888877764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.41 E-value=7.1 Score=43.53 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=70.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHH
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSIVFVGVL-TACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~e 627 (844)
....+.|.++++.+.+ .-|+..-|...- ..+...|++++|++.|+.......--|. ...+--+...+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3456778888888877 677776554433 3566778888888888865431111122 2223345666778888999
Q ss_pred HHHHHHhC-CCCCC-hHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHh
Q 003148 628 ALDLIKSM-PVEPN-DVIWGSLLAAC-QKHQNV-------DIAAYAAERITE 669 (844)
Q Consensus 628 A~~~~~~m-~~~p~-~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 669 (844)
|.+.|.++ ..... ..+|.-+.++| ...|+. ++|...++++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 98888888 22222 33444444444 446766 666666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.33 Score=31.17 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.12 E-value=2.4 Score=46.55 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=87.8
Q ss_pred HHhCCCchHHHHHHH-HHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHH
Q 003148 214 CARRDLPKEAVYLFF-EMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDT 292 (844)
Q Consensus 214 ~~~~g~~~~A~~l~~-~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 292 (844)
..-+++++++.++.+ .-.-..++ ..-...+++.+-+.|..+.|.++-.. + ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 344566666555543 11111111 22355666666666666666655322 1 123455667888998
Q ss_pred HHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCC
Q 003148 293 AKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLE 372 (844)
Q Consensus 293 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 372 (844)
|.++-++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.+...|+.+.-+++.......|-
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 888876665 455899999999999999999988887643 45555566666776666666555554442
Q ss_pred chhhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 003148 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMS 402 (844)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 402 (844)
+|.....+.-.|++++..+++.+-.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2444445555667766666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.7 Score=42.84 Aligned_cols=111 Identities=10% Similarity=0.052 Sum_probs=84.0
Q ss_pred HHHHHHhcC--CCCceehHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC-----------
Q 003148 293 AKQLFGECK--DRNLVLCNTIMSNYVRL-----GLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLG----------- 354 (844)
Q Consensus 293 A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 354 (844)
.++.|.... ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|..+|..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666665 56777788887777654 556667778889999999999999999998775532
Q ss_pred -----ChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCC-HHHHHHHHhhcCC
Q 003148 355 -----DLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGK-QEMACRIFDHMSN 403 (844)
Q Consensus 355 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~~m~~ 403 (844)
.-+.+..+++.|...|+.||-.+-..|++.+++.+. ..+..++.-.|++
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 235677888999999999999999999999988876 3455566666654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=20 Score=36.78 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=32.4
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEG-NGEQAVELFNEMLRQGIKPDSIVFVGVLTACS 584 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 584 (844)
+..+-...+.++++.|+.+....+..-+.++|...-...+.++.+.+ +..++...+..++. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444444555555554332222223333333333333333333322 12344444444442 334444444444444
Q ss_pred ccCc
Q 003148 585 HGGL 588 (844)
Q Consensus 585 ~~g~ 588 (844)
+.|.
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 4444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.87 E-value=6.2 Score=42.68 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=66.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCh--HHHHHHHHHHHh
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP-V-EPND--VIWGSLLAACQK 653 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~-~p~~--~~~~~ll~~~~~ 653 (844)
.+...+-+.|+.+||++.+.+|.+++...........|+..|...+.+.++..++.+-. + -|.. ..|++.+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 45555668899999999999998744322234456678899999999999999988873 1 2433 355554444343
Q ss_pred cCC---------------HHHHHHHHHHHHhcCCCCCc
Q 003148 654 HQN---------------VDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 654 ~g~---------------~~~a~~~~~~~~~~~p~~~~ 676 (844)
-++ ...|.++..++.+.+|.-+.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 332 12356788999999987663
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.4 Score=40.49 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=82.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHhccCcHHHHHHHHHHhHh---hcCCCCCcchHHH
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPD-----SIVFVGVLTACSHGGLVNQGWHLFRSMTD---IHGVSPQIVHYGC 614 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ 614 (844)
+|..++.-.+.++++++.|+...+--...+ -..+.+|.+.+....++++|..+..+..+ .+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 355556666778889998888765221111 24678888888888899988877666543 2333322233333
Q ss_pred H-----HHHHHhcCChHHHHHHHHhC-------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 615 M-----VDLLGRAGLLGEALDLIKSM-------PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 615 l-----i~~~~~~g~~~eA~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
+ .-+|-..|++-+|.+.-++. +-+| .......+...|+..|+.|.|..-|+++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3 34566677777676666554 3333 233566778889999999999988888875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.50 E-value=3.2 Score=35.99 Aligned_cols=50 Identities=26% Similarity=0.467 Sum_probs=22.8
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
.+..|+++.|++.|.... ......||.-..++.-.|+.++|++-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444555544444332 23344444444444444444444444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.56 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778889999999999999888754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.49 E-value=11 Score=34.40 Aligned_cols=88 Identities=17% Similarity=0.038 Sum_probs=52.3
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~ 659 (844)
.-...++.+++..++..+.- +.|. .++-..-+..+.+.|++.+|..+|++. .-.|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33455677777777777765 5566 333334455667788888888888887 333444455666666655433233
Q ss_pred HHHHHHHHHhcCC
Q 003148 660 AAYAAERITELDP 672 (844)
Q Consensus 660 a~~~~~~~~~~~p 672 (844)
=....+++++..+
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3344555666555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.2 Score=30.70 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI 574 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 574 (844)
.|..+...|.+.|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466777778888888888888888887 667664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=89.03 E-value=12 Score=39.76 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
-.+.+++.++.-.|+.++|.+..++|.+
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3455666677777777777777777766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.66 Score=30.39 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.72 E-value=93 Score=40.90 Aligned_cols=307 Identities=12% Similarity=0.109 Sum_probs=164.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhc----CCCCc--chHHHHHHHHHhcCCHHHHHHHHhh-CCCCCccccccccccccccCC
Q 003148 380 TMIDMYMKCGKQEMACRIFDHM----SNKTV--VSWNSLIAGLIKNGDVESAREVFSE-MPGRDHISWNTMLGGLTQENM 452 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 452 (844)
.|..+-.+|+.+..|...+++- .+.+. .-+-.+...|..-+++|....+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 3444556777777777777772 22111 2233334477777777766555542 22222 1223444566788
Q ss_pred hHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchh-HHhHHhhhHHhcCCHHHHHHHH
Q 003148 453 FEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQ-LATALVDMFARCGDPQRAMQVF 530 (844)
Q Consensus 453 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~k~g~~~~A~~~~ 530 (844)
+..|...|+.+.+. .|+ ..+++.++......+.++...-..+..... ..+... .++.-+.+--+.++++.-.+..
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 89999999988765 344 556776666555555555554433322222 122222 2233344446667777666665
Q ss_pred HhcCCCCHhHHHHH-HH-HHHhc--CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH--------
Q 003148 531 RRMEKRDVSAWTAA-IG-AMAME--GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRS-------- 598 (844)
Q Consensus 531 ~~~~~~~~~~~~~l-i~-~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~-------- 598 (844)
. .++..+|.+. +. ...+. .+.-.-.++.+.+.+.-+. =+.+|+..|.+..+.++.-+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 5666677665 22 22221 1211222334433332111 12344444333333322211
Q ss_pred --hHhhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----hHHHHHHHHHHHhcCCHHHHH
Q 003148 599 --MTDIHGVSPQIV------HYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-----DVIWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 599 --m~~~~~~~p~~~------~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~ 661 (844)
.....+..++.. .|..-...=....+..|-+--+++. ...|+ ..+|-.....++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111123334321 2222221111111222222222221 12322 348999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.+.-++.+..+ +..+.-.+....+.|+-..|..+.+...+..
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99888888774 5689999999999999999999999887653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.60 E-value=17 Score=38.86 Aligned_cols=149 Identities=12% Similarity=0.019 Sum_probs=79.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCcHHHHHHHHHHhHh-hcCCCCCcch
Q 003148 536 RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP---DSIVFVGVLTACSHGGLVNQGWHLFRSMTD-IHGVSPQIVH 611 (844)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~ 611 (844)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+ ...-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888888899988888888887743222 223333344455566788888888877766 1111111111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCChHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 612 YGCMVDLLGRAGLLGEALDL-IKSMPVEPNDVIWGSLLAACQKH------QNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
...+...+.. ..+..... ........-..++..+...+... ++.+++...++++.++.|+....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000012333333333333 788899999999999999888888877766
Q ss_pred HH
Q 003148 685 YA 686 (844)
Q Consensus 685 ~~ 686 (844)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.81 Score=46.25 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=79.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
-.+-|.+.|.+++|+..|..... ..| +...|..-..+|.+..++..|+.-.+.+ .+.. -.-.|..-..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999998876 566 6788888888999999988887766554 2210 1123444444445568
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
+.++|.+-++.+++++|++. -|-..|+......|+.-+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 99999999999999999864 3444555555555554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.38 E-value=13 Score=38.54 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCc--HHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 555 EQAVELFNEMLRQGIKPDSI--VFVGVLTACSHGGL--VNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
+.+...|+.+.+.|+..+.. ....+|..+..... +.++.++++.+.+ .|+++...+|..++-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence 55677888888888877652 34444444433322 4578888888887 789988888876543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.3 Score=28.35 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD 572 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 572 (844)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566777777777777777777777777 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.14 E-value=3.8 Score=41.40 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=58.5
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChhHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLR-----QGIKPDSIVFVG 578 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 578 (844)
..++..++..+..+|+.+.+.+.+++... -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667788889999999999998888773 3677899999999999999999999988765 466666655444
Q ss_pred HHH
Q 003148 579 VLT 581 (844)
Q Consensus 579 ll~ 581 (844)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.4 Score=43.66 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=61.8
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 003148 346 AVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESA 425 (844)
Q Consensus 346 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 425 (844)
++..+.+.+.......++..+.+.+...+..+.+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455556667777777777777766667788899999999999888888888874433 3345677777888888888
Q ss_pred HHHHhhCCC
Q 003148 426 REVFSEMPG 434 (844)
Q Consensus 426 ~~~~~~m~~ 434 (844)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 888777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.59 E-value=3.7 Score=37.43 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..+++.+.++.++.-+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345667777777777777777777777777777777777777777777765543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=86.43 E-value=22 Score=31.20 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=44.6
Q ss_pred hcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH
Q 003148 519 RCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
.||++......+-.+.. +..-....+....+.|+-++-.+++.++.+. -+|+......+.+||.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45555544444433322 2223344566667777777777777776642 366777777777788888888888887777
Q ss_pred hHh
Q 003148 599 MTD 601 (844)
Q Consensus 599 m~~ 601 (844)
+-+
T Consensus 146 ACe 148 (161)
T PF09205_consen 146 ACE 148 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.33 E-value=2.2 Score=43.32 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA- 622 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 622 (844)
..-|.+.|.+++|+..|...+. +.| |.+++..-..||.+...+..|..-...+.. .| ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4569999999999999999888 788 889999999999999988888777766654 11 2234555554
Q ss_pred ------CChHHHHHHHHhC-CCCCChHH
Q 003148 623 ------GLLGEALDLIKSM-PVEPNDVI 643 (844)
Q Consensus 623 ------g~~~eA~~~~~~m-~~~p~~~~ 643 (844)
|...||.+-.+.. .++|+..-
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 4556666555554 56777543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.26 E-value=88 Score=38.04 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhcc
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI--VFVGVLTACSHG 586 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~ 586 (844)
+|.+..+.+...+.+++|.-.|+..-+- .--+.+|...|++.+|+.+..+|.. .-|.. +-..|.+-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 3333444444556666666666544321 1234556666666666666655432 11221 123455555666
Q ss_pred CcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 587 GLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 587 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
++.-+|-++...... . +.--+..|+++..+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 666666555544332 1 223455666666677766665554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.13 E-value=7.2 Score=34.20 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-cCCCCCc-hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKH---QNVDIAAYAAERITE-LDPEKSG-VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+--.+..++... .++.+++.+++.+++ -.|+... ....|+-.+++.|+|++++++.+...+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333444455555443 356677778888876 4444332 3345566678888888888888777653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=4.6 Score=40.91 Aligned_cols=62 Identities=23% Similarity=0.150 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+--.+-+|.+.|.+..|..-++.-.++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35566678899999999999999999999999988888999999999999999988877665
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.86 E-value=2.7 Score=30.40 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
.+.-++.+.|+++.|.+..+.+++++|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355578899999999999999999999986443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.05 E-value=5 Score=29.02 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 003148 678 HVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGY 753 (844)
Q Consensus 678 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 753 (844)
...++-.+.+.|++++|.+..+.+.+. +|...+.......+.++|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999998874 45555555555566777877773
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.78 E-value=4.9 Score=36.02 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=45.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..++.++++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37788888888888888899988888888888999999999999998887765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.62 E-value=2.5 Score=40.17 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=56.2
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 659 (844)
|-..|.++-|+--|.+... +.|+ +..||.|.--|...|+++.|.+.|+.. .+.|.-. +...=.-++.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 4445666666666666655 6676 566777776777778888888887776 5555321 11111112333577788
Q ss_pred HHHHHHHHHhcCCCCC
Q 003148 660 AAYAAERITELDPEKS 675 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~ 675 (844)
|.+-+-+-.+-+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 8877777777777775
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.31 E-value=34 Score=33.34 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=16.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
...+++.+|+.+++++....-+|+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 345778888888888876554443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.76 E-value=6.5 Score=36.53 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC----chHHHHHHHHHHh
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLLSNIYASAGK----WTNVARVRLQMKE 703 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~~ 703 (844)
+++|+.-+++++.++|+...++..++++|...|. -.+|.+.|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 5677788888899999999999999999987664 3355555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=83.70 E-value=67 Score=34.43 Aligned_cols=206 Identities=15% Similarity=0.187 Sum_probs=132.7
Q ss_pred cCCHHHHHHHHHhcCC----CCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHH
Q 003148 520 CGDPQRAMQVFRRMEK----RDVSAWTAAIGAMA-MEGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVN 590 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 590 (844)
.|+.++|.+.+..+.. +....+-+|+.+-. ...++.+|+++|++..- .-|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6889999999988873 34566777777644 45689999999999876 56654 33444555678899999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 591 QGWHLFRSMTDIHGVSPQIVHYG-CMVDLLGRAG---LLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
++..+-......|...|=...|. -++..+.+.+ ..+.-.+++..|.-.-...+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777666666544333 2334444433 3445555566653222345788888888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHc-----CCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYASA-----GKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSML 741 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l 741 (844)
++.+...+ ..-...+.+|... .+.+++.+.+..+... +.+|.-..+....
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~------------------------~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRD------------------------KLSERDRALLEAA 337 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChh------------------------hCChhhHHHHHHH
Confidence 99987443 3334444455332 3455555555443322 2355555565555
Q ss_pred HHHHHHHHHcC
Q 003148 742 REMNCRLRDAG 752 (844)
Q Consensus 742 ~~l~~~~~~~g 752 (844)
..+-..+.+..
T Consensus 338 ~~va~~V~~~p 348 (421)
T PRK12798 338 RSVARQVRRAP 348 (421)
T ss_pred HHHHHHHhcCc
Confidence 55666665543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.45 E-value=0.9 Score=29.30 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=8.2
Q ss_pred cchHHHHHHHHHhcCChHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA 628 (844)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.25 E-value=2.5 Score=26.84 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD 572 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 572 (844)
.|..+...|.+.|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 455666677777777777777777776 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.00 E-value=34 Score=36.48 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccc
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSNK---TVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ 449 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 449 (844)
..|+.-|.-.|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-..-+.++++.-....+|-|.|-.||.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 46788889999999999999987764 456788888888888887777777777666677777777777654
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.2 Score=45.68 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEPNDVIWGSLL-AACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
-+...+.++.|..++.++ .++||...|-+.- .++.+.+++..|..=+.++++++|.....|+.-+.++...+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344556666777776666 6677766555544 56777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 003148 696 RVRLQMKE 703 (844)
Q Consensus 696 ~~~~~m~~ 703 (844)
..++..+.
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 88876654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.45 E-value=32 Score=31.90 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=67.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 003148 124 SLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDV-FVENCLINFYGECGDIVDGRRVFDEMSER 202 (844)
Q Consensus 124 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 202 (844)
+..+.+.+.+++|+...+..+++.+.+.|.+..- .+++..++-+|. .+...|++.-. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHHH
Confidence 4445555667777777777777777777665433 233344433333 33333333221 112222222222222
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 003148 203 NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDE 267 (844)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 267 (844)
=...+..++..+...|++-+|+++.+..... +...-..++.+..+.++...--.++....+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2224566677777788888888777664221 223334555555555555444444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.16 E-value=43 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVF 429 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 429 (844)
..+++.+...|++-+|.+..+....-+...-..++.+-.+.+|...-..+|
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 456667777888888888877765544444455555555555544433333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.32 E-value=50 Score=31.32 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHCCCCCChhHHH--HHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH-----HHHHHHhcCChHHH
Q 003148 556 QAVELFNEMLRQGIKPDSIVFV--GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC-----MVDLLGRAGLLGEA 628 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~eA 628 (844)
+.....+++....-.....++. .+...+...|++++|..-++.... .|.-+.+.. |..+....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555555522111112222 233456778888888888876654 133333333 44567788899999
Q ss_pred HHHHHhCCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 629 LDLIKSMPVEPNDV--IWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 629 ~~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
+..++...- ++-. .-..-..++...|+-++|+..|+++++.++++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 998887531 1111 11222346778889999999999998887544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.16 E-value=37 Score=36.17 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDP----EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+|..+...++++|+++.|...+.++.+..+ ..+.....-+......|+-++|.+.++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999998653 24567777889999999999999998888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.83 E-value=7.7 Score=36.88 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=54.7
Q ss_pred HHhcCChHHHHHHHHhCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCch
Q 003148 619 LGRAGLLGEALDLIKSMPVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE----KSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 692 (844)
..|.|+ ++|.+.|-.+.-.| +....-..+..+....|.++++..+-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344444 56777777773333 3444445556666678999999999999986443 5678999999999999999
Q ss_pred HHH
Q 003148 693 NVA 695 (844)
Q Consensus 693 ~a~ 695 (844)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.75 E-value=1.2e+02 Score=35.38 Aligned_cols=335 Identities=10% Similarity=-0.011 Sum_probs=162.6
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhC-CCchhhHHHHHHHHHHHcCCHH
Q 003148 314 NYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNG-LEGWDSICNTMIDMYMKCGKQE 392 (844)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~ 392 (844)
...+.|++.++.++..++....+ .....|..+.... +.. ...++-..+.+.. .+.....-..-+..+.+.+++.
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l---~~~-~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL---MNQ-PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc---ccC-CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 35677888888777776643222 2222333332221 111 2235555555543 3334445555566666777777
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccCh
Q 003148 393 MACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR 472 (844)
Q Consensus 393 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 472 (844)
.....+..- ..+...-.....+....|+.++|......+--. ..-..+..-.+|....+.|...+.
T Consensus 117 ~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-------------g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 117 GLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-------------GKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------------CCCCChHHHHHHHHHHHcCCCCHH
Confidence 777733222 234444455666677777766554444332110 001123444455555544433333
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHH--h
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMA--M 550 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~ 550 (844)
..+.-+..+ ...|+...+..+...+- .........++..+.+.. .+..++.... ++...-...+-++. .
T Consensus 183 d~w~R~~~a-l~~~~~~lA~~l~~~l~----~~~~~~a~a~~al~~~p~---~~~~~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 183 AYLERIRLA-MKAGNTGLVTYLAKQLP----ADYQTIASALIKLQNDPN---TVETFARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHhcC----hhHHHHHHHHHHHHHCHH---HHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence 333332222 23455555555554431 111223344444443333 3333333221 12111111112222 2
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHH
Q 003148 551 EGNGEQAVELFNEMLRQG-IKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 627 (844)
..+.+.|..++.+..... ..+.. .....+.......+..+++...++.... ...+.....-.+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 456688888888775433 33333 2233333333333235667777765543 11233334444555558889998
Q ss_pred HHHHHHhCCCC-CChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 628 ALDLIKSMPVE-PNDVIWGS-LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 628 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
+...|..|+.. -+...|.- +..+....|+.++|...++++.. +. .+|-.|+.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa 384 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAA 384 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHH
Confidence 88888888321 12233433 34455668999999999888744 22 35655543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=80.61 E-value=20 Score=37.08 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhCCCCChhHHH
Q 003148 157 GVQVHGAIVKMGFDRDVFVEN 177 (844)
Q Consensus 157 a~~~~~~~~~~g~~~~~~~~~ 177 (844)
...+++.+.+.|+..+.+++-
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHhccCccChHHH
Confidence 334455555555554444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 7e-16
Identities = 105/657 (15%), Positives = 202/657 (30%), Gaps = 201/657 (30%)
Query: 167 MGFD--------RD---VFVENCLINFYGECGDIVDG-RRVF-----DE-MSERNVVSWT 208
M F+ +D VF + + NF +C D+ D + + D + ++ VS T
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 209 SLICACARRDLPKEAVYLFFEMVEEGIKPN---------------SVTMVCVISACAKLQ 253
+ +E V F VEE ++ N S+ I +L
Sbjct: 65 LRLFWTLLSK-QEEMVQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 254 NLELGDRVCAY-------IDELGMKANALMVNALVDMY-MK-CGAVDTAKQ-LFGE-CKD 302
N Y +L L V + + G K + + C
Sbjct: 121 N--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-----KTWVALDVCLS 173
Query: 303 RNLVLCNTIMSN---YVRLGLAREALAILDEM--LLH------GPRPDRV--TMLSAVSA 349
+ M ++ L +L+ + LL+ R D L S
Sbjct: 174 YKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 350 SAQLGDLLCGRMCHGY-----VLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNK 404
A+L LL + Y VL N ++ + + ++C+I
Sbjct: 231 QAELRRLLKSKP---YENCLLVLLN---VQNA---KAWNAF------NLSCKIL------ 269
Query: 405 TVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVML 464
+ + + D SA HIS + LT +E L L
Sbjct: 270 -LTTRFKQVT------DFLSAATTT-------HISLDHHSMTLTP----DEVKSLLLKYL 311
Query: 465 SERIKVDRVTMVGVAS-ACGYLGAL---DLAKWI-YAYIEKNGIHCDMQLATALVDMFAR 519
R + ++ + LA W + ++ + +L T + +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD------KLTTII-ESSLN 364
Query: 520 CGDPQ------RAMQVFRRMEKRDVSA------WTAAIGAMAMEGNGEQAVELF-NEMLR 566
+P + VF + W I + V + N++ +
Sbjct: 365 VLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVI---------KSDVMVVVNKLHK 413
Query: 567 QGI-----KPDSI----VFVGVLTACS-----HGGLVNQGWHLFRSMTDIHGVSPQ---- 608
+ K +I +++ + H +V+ +++ ++ D + P
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTF-DSDDLIPPYLDQ 471
Query: 609 -----IVHYGCMVDLLGRAGLLGEA-LDL--IKSMPVEPNDVIW---GSLLAACQKHQNV 657
I H+ ++ R L LD ++ + + W GS+L Q
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQ----- 525
Query: 658 DIAAYAAERITELDPEKSG-VHVLL-------SNIYASAGKWTNVARVRLQMKEQGI 706
+ Y I + DP+ V+ +L N+ S K+T++ R+ L +++ I
Sbjct: 526 QLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICS--KYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 80/547 (14%), Positives = 144/547 (26%), Gaps = 168/547 (30%)
Query: 38 SLKNCKTLNELKQPHCHILKQGLGH--KPSYISKVVCTCAQMGTFESLTYAQKAFD---Y 92
L+ L EL +P ++L G+ K V C Q D +
Sbjct: 139 KLRQA--LLEL-RPAKNVLIDGVLGSGKTWVALDV---CLSYKV-------QCKMDFKIF 185
Query: 93 YI---KDNETSATLFMYNSLIR----GYSCIGLGVEAISLYVELAGFG---ILPDKFTFP 142
++ N L M L+ ++ I L + +L K +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYE 244
Query: 143 FVL----NACTKS--SAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVF 196
L N +AF ++ ++ R V + L +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI---LLTT---RFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 197 DEM-SERNVVSWTSLICACARRDLPKEA-------VYLFFEMVEEGI-------KPNSVT 241
+ ++ + C +DLP+E + + E + +G+ N
Sbjct: 299 TPDEVKSLLLKYLD----CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 242 MVCVISACAKLQNLELGD-RVCAYIDELGM-KANALMVNALVDMYMKCGAVDTAKQLFGE 299
+ +I + L LE + R D L + +A + L+ + + +
Sbjct: 355 LTTIIESS--LNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 300 CKDRNLVLCNTIMSNYVRLGLAREALAILDEML-LHGPRPDRVTMLSAVSASAQLGDLLC 358
+LV S + E L+ LH R
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--R--------------------- 447
Query: 359 GRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418
+ Y + + D I +D Y + H+
Sbjct: 448 -SIVDHYNIPKTFDSDDLIPPY-LDQY-----------FYSHI----------------- 477
Query: 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVM------LSERIKVDR 472
G H L E M LFR++ L ++I+ D
Sbjct: 478 ---------------GH-H---------LKNIEHPER-MTLFRMVFLDFRFLEQKIRHDS 511
Query: 473 VTMVGVASACGYLGALDLAKWIY-AYIEKNGIHCDMQLATALVDMFARCG-----DP--- 523
S L L Y YI N + +L A++D +
Sbjct: 512 TAWNASGSILNTL--QQLKF--YKPYICDNDPKYE-RLVNAILDFLPKIEENLICSKYTD 566
Query: 524 --QRAMQ 528
+ A+
Sbjct: 567 LLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 3e-05
Identities = 60/359 (16%), Positives = 114/359 (31%), Gaps = 91/359 (25%)
Query: 17 VTT----LTNQHKAKTTPKDSPSIGSLKNCKTLNELKQPHCHILKQGLGHKPSYISKVVC 72
+TT +T+ A TT S+ T +E+K +L + L +P + + V
Sbjct: 270 LTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKS----LLLKYLDCRPQDLPREVL 323
Query: 73 T-----CAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAIS--- 124
T + + ES+ +D + N + L I + +
Sbjct: 324 TTNPRRLSIIA--ESIRDGLATWDNWKHVN--------CDKLTT---IIESSLNVLEPAE 370
Query: 125 ---LYVELAGFGILPDKFTFP-----------------FVLNACTKSSAFGEG-----VQ 159
++ L+ + P P V+N K S + +
Sbjct: 371 YRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 160 VHGAI--VKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLI------ 211
+ +K+ + + + +++ Y +I D + + S I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 212 CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMK 271
R V+L F +E+ I+ +S S LQ L+ YI +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICD-NDP 539
Query: 272 ANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDE 330
+VNA++D K NL+ ++ +R+ L E AI +E
Sbjct: 540 KYERLVNAILDFLPKIEE--------------NLICSKY--TDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 8e-05
Identities = 71/482 (14%), Positives = 133/482 (27%), Gaps = 193/482 (40%)
Query: 400 HMSNKTVVSWNSLIAGLIKNGDV----ESAREVFS--EMPGRDHISWNTMLGGLTQENMF 453
K ++S + N D + + + S E+ DHI + ++
Sbjct: 15 QYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEI---DHI--------IMSKDAV 61
Query: 454 EEAMELFRVMLS--ERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT 511
+ LF +LS E + V + V Y K++ + I + + +
Sbjct: 62 SGTLRLFWTLLSKQEEM-VQK--FVEEVLRINY-------KFLM-----SPIKTEQRQPS 106
Query: 512 ALVDMFARCGDP-QRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIK 570
+ M+ D QVF K +VS Q + L + ++
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFA---KYNVSR--------------LQPYLKLRQALLE-LR 148
Query: 571 PDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALD 630
P V + G + G G+ + ALD
Sbjct: 149 PAKNVLI-------DG------------VL------------GS-----GKTWV---ALD 169
Query: 631 LIKSMPVE---PNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687
+ S V+ + W +L C + V L+ L +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNL-KNCNSPETV------------LEM--------LQKLL-- 206
Query: 688 AGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCR 747
Q+ + SS+I++ +++I + LR +
Sbjct: 207 -----------YQIDPNWTSRSDHSSNIKLR---------------IHSIQAELRRL--- 237
Query: 748 LRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFG---LISTSKTMPIRVVKNL--- 801
L+ Y N LL + + + A L++T +
Sbjct: 238 LKSKPYE----NCLLVLLNVQNAKAWN------AFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 802 RLCCDCHS-----------FAKLVS-KVYD--RE----------II---VRDN-NRFHFF 833
+ D HS K + + D RE II +RD + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 834 RQ 835
+
Sbjct: 348 KH 349
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 8e-10
Identities = 18/149 (12%), Positives = 42/149 (28%), Gaps = 9/149 (6%)
Query: 499 EKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR-------DVSAWTAAIGAMAME 551
+ + Q A A + + + + A + A +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 552 GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQG-WHLFRSMTDIHGVSPQIV 610
G ++ V + + G+ PD + + L M+ G+ Q +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQAL 237
Query: 611 HYGCMVDLLGRAGLLGEALDLIKSMPVEP 639
++ RA +L + + + P
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 4e-09
Identities = 28/261 (10%), Positives = 75/261 (28%), Gaps = 8/261 (3%)
Query: 206 SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYI 265
+ T + R + A L + P + ++ +L++
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 266 DELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR-------NLVLCNTIMSNYVRL 318
+ + + A + + A L + L + N +M + R
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 319 GLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLL-CGRMCHGYVLRNGLEGWDSI 377
G +E + +L + G PD ++ +A+ + C + + GL+
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 378 CNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDH 437
++ + + ++ S + + L+++ + R + ++
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
Query: 438 ISWNTMLGGLTQENMFEEAME 458
L E +
Sbjct: 299 TLQCLFEKQLHMELASRVCVV 319
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 5e-09
Identities = 26/210 (12%), Positives = 69/210 (32%), Gaps = 12/210 (5%)
Query: 424 SAREVFSEMPGRDHISWNTMLGGLTQEN----MFEEAMELFRVMLSERIKVDRVTMVGVA 479
A + W L L QE + ++ + ++
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 480 SACGYLGALDLAKWI---YAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR 536
C L LA + + + + + A++ +AR G + + V ++
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 537 ----DVSAWTAAIGAMAMEGNGEQAVE-LFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQ 591
D+ ++ AA+ M + +E +M ++G+K ++ +L+ ++
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 592 GWHLFRSMTDIHGVSPQIVHYGCMVDLLGR 621
+ + + + P + + D+ +
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 2e-08
Identities = 19/170 (11%), Positives = 51/170 (30%), Gaps = 8/170 (4%)
Query: 136 PDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRV 195
P + +L + G + + +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 196 FDEMSER-------NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISA 248
+ + + +++ AR+ KE VY+ F + + G+ P+ ++ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 249 CAKL-QNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLF 297
+ Q+ +R + + G+K AL L+ + + ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 2e-05
Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 8/135 (5%)
Query: 408 SWNSLIAGLIKNGDVESAREVFSEMPGR-------DHISWNTMLGGLTQENMFEEAMELF 460
+ + + A + G+ +N ++ G ++ F+E + +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 461 RVMLSERIKVDRVTMVGVASACGYLGALDLAKWIY-AYIEKNGIHCDMQLATALVDMFAR 519
++ + D ++ G + + G+ L+ R
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 520 CGDPQRAMQVFRRME 534
+ +V
Sbjct: 249 ATVLKAVHKVKPTFS 263
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 4e-04
Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 7/148 (4%)
Query: 61 GHKPSYISKVVCTCAQMGTFESLTYAQKAFDYY--IKDNETSATLFMYNSLIRGYSCIGL 118
G + ++ C C A + + TL MYN+++ G++ G
Sbjct: 125 GQQQRLLAFFKC-CLLTDQLPL---AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 119 GVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQ-VHGAIVKMGFDRDVFVEN 177
E + + + G+ PD ++ L + ++ + + G
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
Query: 178 CLINFYGECGDIVDGRRVFDEMSERNVV 205
L++ + +V S +
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 844 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.54 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.39 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.39 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.33 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.24 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.16 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.11 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.1 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.09 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.85 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.57 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.56 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.38 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.31 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.28 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.25 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.14 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.11 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.98 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.98 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.97 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.96 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.95 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.92 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.9 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.74 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.72 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.57 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.53 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.38 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.31 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.23 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.91 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.89 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.88 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.75 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.67 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.08 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.44 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.92 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.78 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.58 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.71 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.48 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.75 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 87.5 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.15 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.38 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.54 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.28 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.19 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.6 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.18 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=399.09 Aligned_cols=527 Identities=9% Similarity=-0.008 Sum_probs=367.0
Q ss_pred ccChhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchH
Q 003148 42 CKTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVE 121 (844)
Q Consensus 42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 121 (844)
|..+....++|......++...+. ......+.++|. +..++..|+ .++.+++..|+.++..|.+.|++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~ 102 (597)
T 2xpi_A 33 PPSMGALNANNSNSQLSTLTISPM--TYLANNTSTDGS---FLKERNAQN-----TDSLSREDYLRLWRHDALMQQQYKC 102 (597)
T ss_dssp ------------CTTSCGGGGCGG--GGGC-----------------------------CHHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHhhccccccccceeechh--hhhcccccccCc---cCCCCCccc-----cchHHHHHHHHHHHHHHHHccCchH
Confidence 334444445555444333322222 222334667777 888899999 8888899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC-
Q 003148 122 AISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS- 200 (844)
Q Consensus 122 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~- 200 (844)
|+.+|++|.. ..||..++..+..+|.+.|++++|..+++.+... ++++.+++.++.+|.++|++++|.++|+++.
T Consensus 103 A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 178 (597)
T 2xpi_A 103 AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP 178 (597)
T ss_dssp HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 9999999985 5678899999999999999999999999988644 6889999999999999999999999999543
Q ss_pred CC------------------CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcch-HHHHHHHHHhcCCc--hHHH
Q 003148 201 ER------------------NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVT-MVCVISACAKLQNL--ELGD 259 (844)
Q Consensus 201 ~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~--~~a~ 259 (844)
.. +..+|+.++.+|.+.|++++|+++|++|.+.+ |+..+ +..+...+...+.. +.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp TC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHH
Confidence 33 47899999999999999999999999999864 44333 33333222221111 1111
Q ss_pred HH-HHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 003148 260 RV-CAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGP 336 (844)
Q Consensus 260 ~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 336 (844)
.+ +..+...+......+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc
Confidence 11 44444445555667788889999999999999999999987 7888999999999999999999999998886542
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHH
Q 003148 337 RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGL 416 (844)
Q Consensus 337 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 416 (844)
. +..+ ++.++..|.+.|++++|..+|+.+.+.+
T Consensus 337 ~-~~~~-----------------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------- 369 (597)
T 2xpi_A 337 Y-NLDV-----------------------------------YPLHLASLHESGEKNKLYLISNDLVDRH----------- 369 (597)
T ss_dssp T-CCTT-----------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------
T ss_pred c-cHHH-----------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhC-----------
Confidence 1 2222 3455555566666666666655543200
Q ss_pred HhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHH
Q 003148 417 IKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYA 496 (844)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 496 (844)
..+..+|+.++..|.+.|++++|+++|+++.+. .
T Consensus 370 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--------------------------- 403 (597)
T 2xpi_A 370 -----------------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--D--------------------------- 403 (597)
T ss_dssp -----------------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---------------------------
T ss_pred -----------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C---------------------------
Confidence 034556666666666666666666666666542 1
Q ss_pred HHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C
Q 003148 497 YIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP-D 572 (844)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 572 (844)
+.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+ ..| +
T Consensus 404 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 474 (597)
T 2xpi_A 404 -------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYD 474 (597)
T ss_dssp -------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCC
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 2245566777777888888888888887665 34667888888888888888888888888877 344 4
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHH
Q 003148 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWG 645 (844)
Q Consensus 573 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~ 645 (844)
..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 5678888888888888888888888887632 55676 568888888888888888888888877 3344 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
.+..+|...|+.++|...++++++++|+++..+..|+++|.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 88888888888888888888888888888888888887764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=386.49 Aligned_cols=479 Identities=11% Similarity=0.007 Sum_probs=368.8
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVC 262 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 262 (844)
+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|+++.|.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 56678888899999999999999999999999999999999999999985 5678899999999999999999999999
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------------CceehHHHHHHHHHcCChHH
Q 003148 263 AYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR-------------------NLVLCNTIMSNYVRLGLARE 323 (844)
Q Consensus 263 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~ 323 (844)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678999999999999999999999999965433 37899999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHH-HhhcCChh--hHHHH-HHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHh
Q 003148 324 ALAILDEMLLHGPRPDRVTMLSAVSA-SAQLGDLL--CGRMC-HGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFD 399 (844)
Q Consensus 324 A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 399 (844)
|+++|++|.+.+ |+..+....+.. +...+..+ ....+ +..+...+......+++.++.+|.++|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999864 444433333322 22221111 11111 3344444455556667777888888888888888888
Q ss_pred hcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHh
Q 003148 400 HMSN--KTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVG 477 (844)
Q Consensus 400 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 477 (844)
++.+ ++..+|+.+ +.+|.+.|++++|+++|++|.+.+ ..+..++..
T Consensus 297 ~~~~~~~~~~~~~~l-------------------------------~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 344 (597)
T 2xpi_A 297 SINGLEKSSDLLLCK-------------------------------ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPL 344 (597)
T ss_dssp TSTTGGGCHHHHHHH-------------------------------HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHH
T ss_pred HhhcCCchHHHHHHH-------------------------------HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHH
Confidence 8776 444444444 445555555555555555555432 124455555
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 554 (844)
++.++...|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 5556666666666666666555443 4467888999999999999999999999875 45788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003148 555 EQAVELFNEMLRQGIKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
++|+++|+++.+ ..| +..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+
T Consensus 424 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 424 DQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp HHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998 455 56899999999999999999999999998832 2347889999999999999999999999
Q ss_pred hC-------CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 634 SM-------PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 634 ~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++ +..|+ ..+|..++.+|.+.|++++|+..++++++++|+++.+|..++++|.+.|+|++|.+.++++.+.
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 88 45787 6799999999999999999999999999999999999999999999999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=262.66 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=172.5
Q ss_pred HHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC---------hHH
Q 003148 86 AQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSA---------FGE 156 (844)
Q Consensus 86 A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~ 156 (844)
+..++..+.+......+...++.+|.+|++.|++++|+++|++|.+.|++||.+||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444433332333333446888999999999999999999999999999999999999999987654 678
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 003148 157 GVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS----ERNVVSWTSLICACARRDLPKEAVYLFFEMVE 232 (844)
Q Consensus 157 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 232 (844)
|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999986 48999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 003148 233 EGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKC 287 (844)
Q Consensus 233 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 287 (844)
.|+.||..||+++|.+|++.|++++|.++++.|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-27 Score=262.95 Aligned_cols=213 Identities=10% Similarity=0.054 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 003148 120 VEAISLYVELAGFGILPDK-FTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDE 198 (844)
Q Consensus 120 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 198 (844)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455566777777766544 458888999999999999999999999999999999999999998887764332
Q ss_pred cCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHH
Q 003148 199 MSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVN 278 (844)
Q Consensus 199 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 278 (844)
.+.+..++|+++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2344567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q 003148 279 ALVDMYMKCGAVDTAKQLFGECKD----RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLG 354 (844)
Q Consensus 279 ~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 354 (844)
+||.+|++.|++++|.++|++|.+ ||.++|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..++..+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999888888888888888888853 6777888888888888888888888888888888888888888888776543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-24 Score=233.53 Aligned_cols=367 Identities=13% Similarity=0.116 Sum_probs=261.7
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHH
Q 003148 314 NYVRLGLAREALAILDEMLLHGPRPDRV-TMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQE 392 (844)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 392 (844)
.+.+.|++++|++.+.++.+. .|+.. .+..+...+...|+.+.+...+...++.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 344455555555555555443 23332 22223333444555555555555544432 234555666777777777777
Q ss_pred HHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccccccccccccccCChHHHHHHHHHHHhC
Q 003148 393 MACRIFDHMSN--K-TVVSWNSLIAGLIKNGDVESAREVFSEMPG--R-DHISWNTMLGGLTQENMFEEAMELFRVMLSE 466 (844)
Q Consensus 393 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 466 (844)
+|...|+++.. | +..+|..+...+.+.|++++|.+.|+++.+ | +...|..+...+...|++++|++.|+++...
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777776643 3 334566677777777777777777666543 2 3445666667777778888888888877764
Q ss_pred Cccc-ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHH
Q 003148 467 RIKV-DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWT 542 (844)
Q Consensus 467 g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~ 542 (844)
.| +..++..+...+...|+++.|...+..+.+.. +.+...+..+...|...|++++|...|++.. ..+...|.
T Consensus 165 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 --QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 34 34566777777777888888888887777765 3356677788888888899999988888665 34577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR 621 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 621 (844)
.+...|...|++++|++.|+++++ ..|+. .++..+..++...|++++|...|+++.+. .+.+...+..++.+|.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 888899999999999999999888 56764 67888888888999999999999988872 23346788888899999
Q ss_pred cCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 622 AGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
.|++++|.+.++++ ...|+ ..+|..+...+...|++++|...++++++++|+++..|..++.+|...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999887 55554 66888888888899999999999999999999988888888888877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=228.72 Aligned_cols=348 Identities=15% Similarity=0.142 Sum_probs=304.2
Q ss_pred HHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHH
Q 003148 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVES 424 (844)
Q Consensus 348 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 424 (844)
..+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.... .+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 45567899999999998888764 33456677888899999999999999987654 466789999999999999999
Q ss_pred HHHHHhhCCC--C-CccccccccccccccCChHHHHHHHHHHHhCCcccChh-hHHhHHHHccccCchHHHHHHHHHHHH
Q 003148 425 AREVFSEMPG--R-DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRV-TMVGVASACGYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 425 A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~ 500 (844)
|.+.|+++.. | +..+|..+...|.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998754 3 4557999999999999999999999999874 56654 455566677888999999999999988
Q ss_pred hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHH
Q 003148 501 NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVF 576 (844)
Q Consensus 501 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 576 (844)
.. +.+...++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++..+ ..|+. .++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 75 3467788999999999999999999999886 34577899999999999999999999999998 67865 788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
..+..++...|++++|.+.|+++.+ ..|+ ...|..++.+|.+.|++++|.+.++++ ...| +..+|..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999988 5565 678999999999999999999999998 3334 67899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998863
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=220.53 Aligned_cols=444 Identities=11% Similarity=-0.038 Sum_probs=226.8
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 003148 206 SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYM 285 (844)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 285 (844)
.|......+.+.|++++|+..|+++.... ||..++..+..++...|+++.|.+.+..+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35555666777777777777777777654 567777777777777777777777777777664 335567777777777
Q ss_pred hcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHH
Q 003148 286 KCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMC 362 (844)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 362 (844)
+.|++++|...|+++... +......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 777777777777766432 33334444444444333333333333332222222222111100000000000000000
Q ss_pred HHHHHHhCC---------CchhhHHHHHHHHHHH---cCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 003148 363 HGYVLRNGL---------EGWDSICNTMIDMYMK---CGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFS 430 (844)
Q Consensus 363 ~~~~~~~g~---------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (844)
...+..... +.+...+..+...+.. .|++++|...|+++.+ .++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------~~~ 220 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR------------------------LFE 220 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH------------------------HHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH------------------------Hhh
Confidence 000000000 1112222222222222 4555555555544322 000
Q ss_pred hCC----------CCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHH
Q 003148 431 EMP----------GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 431 ~m~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 500 (844)
... ..+...|..+...|...|++++|+..|+++.... |+...+..+..++...|+++.|...+..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 000 0123355556666666777777777777766532 3344444455555555555555555555544
Q ss_pred hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHH
Q 003148 501 NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVF 576 (844)
Q Consensus 501 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 576 (844)
.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ..++
T Consensus 299 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 375 (514)
T 2gw1_A 299 LD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVP 375 (514)
T ss_dssp TC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHH
T ss_pred cC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHH
Confidence 33 2234455556666666666666666666543 23445566666666666666666666666665 3343 2455
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-ChHHHHHH
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGR---AGLLGEALDLIKSM-PVEP-NDVIWGSL 647 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~m-~~~p-~~~~~~~l 647 (844)
..+...+...|++++|..+++++.+...-.++ ...+..++..|.+ .|++++|.+.++++ ...| +..+|..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 55666666666666666666666552211111 2255566666666 66666666666655 2233 34455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
...+...|+.++|...++++++++|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 6666666666666666666666666655444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-21 Score=218.08 Aligned_cols=422 Identities=12% Similarity=0.035 Sum_probs=298.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 003148 274 ALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 274 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
...+..+...|.+.|++++|...|+++.+ |+..+|..+..+|.+.|++++|++.|+++.+... .+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34566667777788888888888877653 5667777777888888888888888887776531 23345666666677
Q ss_pred hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC----CCcchHHHH---HHHHHhcCCHHH
Q 003148 352 QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN----KTVVSWNSL---IAGLIKNGDVES 424 (844)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~l---i~~~~~~g~~~~ 424 (844)
..|+++.|...+..+.+.+.. +......++..+.+......+.+.+..+.. ++...+..- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777776665532 222223334433333333333333322111 000000000 000001111111
Q ss_pred HHHHHhhCCC---------C-Ccccccccccccc---ccCChHHHHHHHHHHHh-----CCccc--------ChhhHHhH
Q 003148 425 AREVFSEMPG---------R-DHISWNTMLGGLT---QENMFEEAMELFRVMLS-----ERIKV--------DRVTMVGV 478 (844)
Q Consensus 425 A~~~~~~m~~---------~-~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~l 478 (844)
....+..... + +...|......+. +.|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112221111 0 1222222333233 48999999999999987 32222 23466677
Q ss_pred HHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 003148 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE 555 (844)
Q Consensus 479 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 555 (844)
...+...|+++.|...+..+.+.... ...+..+...|.+.|++++|...|+++. ..+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 77888999999999999999888654 8888899999999999999999999876 346778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
+|+..|+++.+ ..|+. .++..+...+...|++++|..+++.+.+ ..| +...+..+...|.+.|++++|.+.++
T Consensus 322 ~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKR---KFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998 55654 7888899999999999999999999988 334 36788899999999999999999999
Q ss_pred hC----CCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 634 SM----PVEPN----DVIWGSLLAACQK---HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 634 ~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
++ +-.|+ ..+|..+...+.. .|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87 22222 3489999999999 9999999999999999999999999999999999999999999999988
Q ss_pred hC
Q 003148 703 EQ 704 (844)
Q Consensus 703 ~~ 704 (844)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=215.80 Aligned_cols=320 Identities=14% Similarity=0.107 Sum_probs=259.2
Q ss_pred chhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccccccccc
Q 003148 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGG 446 (844)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 446 (844)
.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3556677777888888888888888877653 3566777888888888888888888877654 346677788888
Q ss_pred ccccCChHHHHHHHHHHHhCCcccCh----hhHHhH------------HHHccccCchHHHHHHHHHHHHhCCCCchhHH
Q 003148 447 LTQENMFEEAMELFRVMLSERIKVDR----VTMVGV------------ASACGYLGALDLAKWIYAYIEKNGIHCDMQLA 510 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 510 (844)
|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 88888888888888888764 3443 333333 334677899999999999988765 4477888
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHH-------
Q 003148 511 TALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGV------- 579 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------- 579 (844)
..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+... +..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999886 45789999999999999999999999999998 6787654 3333
Q ss_pred -----HHHHhccCcHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHH
Q 003148 580 -----LTACSHGGLVNQGWHLFRSMTDIHGVSPQ-----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSL 647 (844)
Q Consensus 580 -----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~l 647 (844)
..+|.+.|++++|..+|+++.+ +.|+ ..+|..++.+|.+.|++++|++.++++ ...| +..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 6789999999999999999988 4455 457899999999999999999999997 5555 57899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHHcC-----CchHHHHHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS------------NIYASAG-----KWTNVARVRLQ 700 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 700 (844)
..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 5566666 44455555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-20 Score=211.43 Aligned_cols=431 Identities=11% Similarity=0.035 Sum_probs=279.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 003148 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMY 284 (844)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 284 (844)
..|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|+++.|.+.+..+++.. +.+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456777788888888888888888888753 2355667777777788888888888888887765 34567777788888
Q ss_pred HhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHH
Q 003148 285 MKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHG 364 (844)
Q Consensus 285 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 364 (844)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++.... |+...
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~~---------------------- 158 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRGS---------------------- 158 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccccc----------------------
Confidence 88888888888886442 222233333445555666677777777775431 10000
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcc---hHHHHHHHHHhc-CCHHHHHHHHhhCCCCCcccc
Q 003148 365 YVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVV---SWNSLIAGLIKN-GDVESAREVFSEMPGRDHISW 440 (844)
Q Consensus 365 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~ 440 (844)
...|+ ...+..|....+.+.+...+......+.. .+..+...+... +++
T Consensus 159 -----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------ 211 (537)
T 3fp2_A 159 -----QVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY------------------ 211 (537)
T ss_dssp -----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH------------------
T ss_pred -----cccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh------------------
Confidence 00011 22333344555666666655555543322 222222221111 000
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCcccCh--------hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhH
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDR--------VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATA 512 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (844)
....|++++|+.+|+++.+. .|+. .++..+...+...|+++.|...+..+.+.. |+...+..
T Consensus 212 ------~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 281 (537)
T 3fp2_A 212 ------LVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIF 281 (537)
T ss_dssp ------HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHH
Confidence 01123556666666666553 2331 123344445556677777777777776654 33566677
Q ss_pred HhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++++ ..|+. ..+..+...+...|+
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 7777888888888888887665 34567788888888888888888888888887 45654 677778888888888
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC----CCCC----ChHHHHHHHHHHHhc-----
Q 003148 589 VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEP----NDVIWGSLLAACQKH----- 654 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p----~~~~~~~ll~~~~~~----- 654 (844)
+++|..+++++.+ ..|+ ...+..+...|.+.|++++|.+.++++ +..+ ....+..+...+...
T Consensus 360 ~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 360 FTESEAFFNETKL---KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp HHHHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 8888888888877 2344 567778888888888888888888876 1111 122344445566666
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 655 -----QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 655 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88899999999999999988888889999999999999999998888764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-19 Score=201.17 Aligned_cols=360 Identities=12% Similarity=0.051 Sum_probs=251.0
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003148 272 ANALMVNALVDMYMKCGAVDTAKQLFGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVS 348 (844)
Q Consensus 272 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 348 (844)
.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|++.|+++.+.+ |+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------- 92 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD--------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC---------
Confidence 4566777777777788888888877776643 355677777777777777777777777776643 22
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-Cc---chHHHHHHHHHhcCCH
Q 003148 349 ASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-TV---VSWNSLIAGLIKNGDV 422 (844)
Q Consensus 349 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~---~~~~~li~~~~~~g~~ 422 (844)
+..++..+...|.+.|++++|...|+++.+ | +. ..|..++..+...+.+
T Consensus 93 -------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 93 -------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHH
Confidence 234456777788888888888888888765 2 22 4555555543332222
Q ss_pred HHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhC
Q 003148 423 ESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNG 502 (844)
Q Consensus 423 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 502 (844)
.. ...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...+..+.+..
T Consensus 148 ~~-------------------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 148 SQ-------------------ALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HH-------------------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HH-------------------HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22 223445677777777777776532 2244556666667777777777777777776653
Q ss_pred CCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHH------------HHHHHhcCChHHHHHHHHHHHHC
Q 003148 503 IHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAA------------IGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 503 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+.+..++..+...|.+.|++++|...|+++. ..+...|..+ ...|.+.|++++|+..|+++++
T Consensus 208 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~- 285 (450)
T 2y4t_A 208 -NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK- 285 (450)
T ss_dssp -CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 3456777888888888888888888888775 2344455544 7888999999999999999998
Q ss_pred CCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 003148 568 GIKPDS-----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN 640 (844)
Q Consensus 568 g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~ 640 (844)
+.|+. ..+..+..++.+.|++++|..+++.+.+ +.| +...|..+..+|...|++++|.+.++++ ...|+
T Consensus 286 -~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 286 -TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp -HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred -cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 56763 3677788889999999999999999887 345 4778889999999999999999999988 66775
Q ss_pred -hHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHHcCCc
Q 003148 641 -DVIWGSLLAA------------CQKHQ-----NVDIAAYAAER-ITELDPEKSG----------VHVLLSNIYASAGKW 691 (844)
Q Consensus 641 -~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~ 691 (844)
..+|..+..+ |...| +.+++.+.+++ +++.+|++.. .+..++.+|...|+.
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 4566666532 33334 66778888886 7888887532 344555666666555
Q ss_pred hH
Q 003148 692 TN 693 (844)
Q Consensus 692 ~~ 693 (844)
++
T Consensus 442 ~~ 443 (450)
T 2y4t_A 442 EM 443 (450)
T ss_dssp GG
T ss_pred HH
Confidence 54
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-19 Score=200.58 Aligned_cols=444 Identities=11% Similarity=0.001 Sum_probs=270.1
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 103 LFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|...+..+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887753 2345567777777777888888888888877775 4566677777777
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVC 262 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 262 (844)
|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++.... |+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~----------------------- 156 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR----------------------- 156 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc-----------------------
Confidence 777777777777776442 122222222334444444556666666654321 000
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCce---ehHHHHHHHHH--------cCChHHHHHHHHHH
Q 003148 263 AYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLV---LCNTIMSNYVR--------LGLAREALAILDEM 331 (844)
Q Consensus 263 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~l~~~m 331 (844)
.....|+ ...+..|....+.+.+...+....+.+.. .+..+...+.. .|++++|+.+|+++
T Consensus 157 ----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 157 ----GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0000111 11222233344444444444444332222 12222211111 13455555555555
Q ss_pred HhcCCCCChhh-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHH
Q 003148 332 LLHGPRPDRVT-MLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWN 410 (844)
Q Consensus 332 ~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 410 (844)
.+. .|+... +..+ ..++..+...|...|
T Consensus 229 l~~--~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~--------------------- 257 (537)
T 3fp2_A 229 LSA--NTVDDPLRENA----------------------------ALALCYTGIFHFLKN--------------------- 257 (537)
T ss_dssp HC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTT---------------------
T ss_pred HHH--CCCcchhhHHH----------------------------HHHHHHHHHHHHhcc---------------------
Confidence 543 222111 0000 011222333333344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHH
Q 003148 411 SLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDL 490 (844)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 490 (844)
++++|+..|+++... .|+...+..+...+...|+++.
T Consensus 258 -----------------------------------------~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 258 -----------------------------------------NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred -----------------------------------------cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 444444444444432 2334444444555555555555
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 491 AKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~- 372 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL- 372 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 555555555543 2356677888888999999999999998776 34567899999999999999999999999998
Q ss_pred CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhc----------CChHHHHHHH
Q 003148 568 GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRA----------GLLGEALDLI 632 (844)
Q Consensus 568 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~----------g~~~eA~~~~ 632 (844)
..|+. ..+..+...+...|++++|...|+++.+...-.++ ...+..+...|.+. |++++|.+.+
T Consensus 373 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 -KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp -HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred -hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 45665 67888888999999999999999998773321222 12244556778888 9999999999
Q ss_pred HhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 633 KSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 633 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
+++ ...| +..+|..+...+...|+.++|...+++++++.|+++....
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 988 4445 5678999999999999999999999999999998865543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-15 Score=177.99 Aligned_cols=483 Identities=14% Similarity=0.086 Sum_probs=327.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---------------CCc----------------c------cHHHHH
Q 003148 169 FDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---------------RNV----------------V------SWTSLI 211 (844)
Q Consensus 169 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---------------~~~----------------~------~~~~li 211 (844)
+..|+.+....|.+.++.|++.+.+++-++-.- +|. + .....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 456888999999999999999988887655320 111 1 112335
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCC-----------CCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHH
Q 003148 212 CACARRDLPKEAVYLFFEMVEEGIK-----------PNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNAL 280 (844)
Q Consensus 212 ~~~~~~g~~~~A~~l~~~m~~~g~~-----------pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 280 (844)
.+|++.-++..+-.+.-.+.+.+.. ........++..+-+.+++......++.-+..| ..|+.++|+|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnal 879 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNAL 879 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 5555554444443333333322211 122224445555555666666666677667766 5678889999
Q ss_pred HHHHHhcCCHHH----------------------------------------------------HHHHHHhcCCCCceeh
Q 003148 281 VDMYMKCGAVDT----------------------------------------------------AKQLFGECKDRNLVLC 308 (844)
Q Consensus 281 i~~y~~~g~~~~----------------------------------------------------A~~~f~~m~~~~~~~~ 308 (844)
...|...++-.+ |+-+.++ .|...|
T Consensus 880 akiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW 956 (1630)
T 1xi4_A 880 AKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELW 956 (1630)
T ss_pred HHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHH
Confidence 888875432111 1111111 122222
Q ss_pred --------------------------------HHHHHHHHHcCChHHHHHHHHHHHhcCC--CCChhhHHHHHHHHhhcC
Q 003148 309 --------------------------------NTIMSNYVRLGLAREALAILDEMLLHGP--RPDRVTMLSAVSASAQLG 354 (844)
Q Consensus 309 --------------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~ 354 (844)
...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+.
T Consensus 957 ~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka- 1035 (1630)
T 1xi4_A 957 GSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA- 1035 (1630)
T ss_pred HHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-
Confidence 3345667778888888888888774321 01112222233333333
Q ss_pred ChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHH-hcCCHHHHHHHHhhCC
Q 003148 355 DLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLI-KNGDVESAREVFSEMP 433 (844)
Q Consensus 355 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 433 (844)
+...+.++....-+ .....+...+...|.+++|..+|++... +...+..+. ..+++++|.++.++.
T Consensus 1036 D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1036 DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhc-
Confidence 44444444433321 1133466777888999999999998753 222222223 778899999998877
Q ss_pred CCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHH
Q 003148 434 GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATAL 513 (844)
Q Consensus 434 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 513 (844)
.+..+|..+..++...|++++|++.|.+. -|...|..+..+|.+.|+++++.+.+....+.. ++..+.+.+
T Consensus 1103 -n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 -NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 34678889999999999999999999664 366778888999999999999999998887765 444445568
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHH
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGW 593 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 593 (844)
+..|+|.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.
T Consensus 1174 afaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 88999999988655443 4556777888888999999999999999985 37888999999999999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 594 HLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+.+++... ..+|..+..++...|++..|........ -++..+..++..|...|.+++|+..++++++++|.
T Consensus 1242 EaarKA~n-------~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A 1242 DGARKANS-------TRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred HHHHHhCC-------HHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence 99887633 4678888888888999999988876533 34555668888899999999999999999999999
Q ss_pred CCchHHHHHHHHHHc--CCchHHHHHHH
Q 003148 674 KSGVHVLLSNIYASA--GKWTNVARVRL 699 (844)
Q Consensus 674 ~~~~~~~l~~~~~~~--g~~~~a~~~~~ 699 (844)
+.+.+.-|+.+|++- ++..|+.+.|.
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998888887654 45555555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-15 Score=177.62 Aligned_cols=575 Identities=11% Similarity=0.080 Sum_probs=388.7
Q ss_pred cCCCCcchhhHHHHHHHhcCCCCChhHHHHhhC------------ccccCCCCC--C-----Cccc-------------H
Q 003148 59 GLGHKPSYISKVVCTCAQMGTFESLTYAQKAFD------------YYIKDNETS--A-----TLFM-------------Y 106 (844)
Q Consensus 59 g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~------------~~~~~~~~~--~-----~~~~-------------~ 106 (844)
.+..|+.+-...|.++++.|+ ..+..++-. .+.+..++. | |.+- .
T Consensus 720 ~~s~d~~vhfkyi~aa~~~~q---~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~ 796 (1630)
T 1xi4_A 720 NFSQDPDVHFKYIQAACKTGQ---IKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 796 (1630)
T ss_pred cccCChHHHHHHHHHHHHhCC---chhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc
Confidence 356688899999999999998 555544433 111111111 1 1110 1
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCC-----------CcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH
Q 003148 107 NSLIRGYSCIGLGVEAISLYVELAGFGILP-----------DKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFV 175 (844)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 175 (844)
...|..|++.-++..+-.+...+...+... +.....-|+..+-+.+++..-...++.-+..| ..|+.+
T Consensus 797 ~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~ 875 (1630)
T 1xi4_A 797 QKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPAT 875 (1630)
T ss_pred hhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 234555555544444444443333322111 11123444455555555666666677777777 678999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhh------------cCCCCccc----------HHHHHHHHHhCCCchH-HHHHHHHHHH
Q 003148 176 ENCLINFYGECGDIVDGRRVFDE------------MSERNVVS----------WTSLICACARRDLPKE-AVYLFFEMVE 232 (844)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~------------m~~~~~~~----------~~~li~~~~~~g~~~~-A~~l~~~m~~ 232 (844)
+|+|...|...++-.+. .+.+ ..++|+.. -.-||....+++.++. |.-+.++
T Consensus 876 hnalakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r--- 950 (1630)
T 1xi4_A 876 HNALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR--- 950 (1630)
T ss_pred HHHHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---
Confidence 99999999977653332 2211 11233221 2234444444444432 2222222
Q ss_pred cCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCC--cchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----C
Q 003148 233 EGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMK--ANALMVNALVDMYMKCGAVDTAKQLFGECKD-R-----N 304 (844)
Q Consensus 233 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~-----~ 304 (844)
-|...|..++.- +-+.=+++.+......++ .|+.--...+..|...|...+|+++++++.- + +
T Consensus 951 ----~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 951 ----KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred ----cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 244555555521 112334455554444332 2344446677888899999999999998763 2 2
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHH
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDM 384 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 384 (844)
...-|.++.+..+. +..+..+...+... .....+-..|...|.+++|.++++.... .....+.+
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL--- 1085 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL--- 1085 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---
Confidence 24566677777766 45666666665531 1133356677788999999999887521 11111222
Q ss_pred HHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVML 464 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 464 (844)
+...|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...+
T Consensus 1086 ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1086 IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 338889999999999874 4678999999999999999999999775 677788889999999999999999999877
Q ss_pred hCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH
Q 003148 465 SERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA 544 (844)
Q Consensus 465 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l 544 (844)
+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rL 1227 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 1227 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHH
Confidence 754 34333445888889998888644442 2 335556667999999999999999999986 489999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
...|.+.|++++|++.+++. -+..+|..+-.+|...|.+..|...... +..+...+..++..|.+.|.
T Consensus 1228 A~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCC
Confidence 99999999999999999977 3458899999999999999999987653 33456677789999999999
Q ss_pred hHHHHHHHHhC-CCCCC-hHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHHcCCchHHH
Q 003148 625 LGEALDLIKSM-PVEPN-DVIWGSLLAACQK--HQNVDIAAYAAERITELDP-----EKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 625 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
+++|+.+++.. +++|. ...|.-|...+.+ -+++.++.+.|..-..+.| ++...|.-+.-+|.+.|+|++|.
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 99999999877 66664 3466666666655 4577888888888888777 67778999999999999999998
Q ss_pred HH
Q 003148 696 RV 697 (844)
Q Consensus 696 ~~ 697 (844)
..
T Consensus 1376 ~t 1377 (1630)
T 1xi4_A 1376 IT 1377 (1630)
T ss_pred HH
Confidence 53
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=178.13 Aligned_cols=302 Identities=12% Similarity=0.069 Sum_probs=230.8
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGL 447 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 447 (844)
++..+..+...|.+.|++++|...|+.+.+ .+...|..+...+...|++++|...|+++.+ .+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456677888899999999999999988754 3566788888888888888888888887654 2456777788888
Q ss_pred cccCChHHHHHHHHHHHhCCccc---ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHH
Q 003148 448 TQENMFEEAMELFRVMLSERIKV---DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQ 524 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 524 (844)
...|++++|+..|+++.+. .| +.......+. .+.. ...+..+...|...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHH
Confidence 8888888888888888764 34 2111111110 0000 111233456788889999
Q ss_pred HHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 525 RAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 525 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
+|.+.|+++. ..+...|..+...+...|++++|+..++++.+ ..|+. .++..+...+...|++++|...++.+.
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998765 45677888888899999999999999999888 45654 678888888889999999999999888
Q ss_pred hhcCCCCCc-chHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCChH-----HHHHHHHHHHhcCCHHHHH
Q 003148 601 DIHGVSPQI-VHYG------------CMVDLLGRAGLLGEALDLIKSM-PVEPNDV-----IWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 601 ~~~~~~p~~-~~~~------------~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-----~~~~ll~~~~~~g~~~~a~ 661 (844)
+ ..|+. ..+. .++..+.+.|++++|.+.++++ ...|+.. .|..+...+...|++++|.
T Consensus 216 ~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 K---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp H---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred h---hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7 34442 2222 3367789999999999999987 4445432 3455677889999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-17 Score=177.54 Aligned_cols=318 Identities=13% Similarity=0.067 Sum_probs=249.6
Q ss_pred hhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHH
Q 003148 340 RVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGL 416 (844)
Q Consensus 340 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 416 (844)
...+..+...+...|+++.|...+..+++... .+...+..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34566777888899999999999999988643 3567888999999999999999999998764 3667899999999
Q ss_pred HhcCCHHHHHHHHhhCCCCCc---c---ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHH
Q 003148 417 IKNGDVESAREVFSEMPGRDH---I---SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDL 490 (844)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~~---~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 490 (844)
...|++++|...|++..+.++ . .|..+. .... ...+......+...|+++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-----------------~~~~------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV-----------------KADE------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH-----------------HHHH------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH-----------------HHHH------HHHHHHHHHHHHHccCHHH
Confidence 999999999999998866433 1 222111 0000 0112223344556677777
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 491 AKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|++..+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~- 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 777777766654 3456778888899999999999999998876 34678899999999999999999999999998
Q ss_pred CCCCChhH-HH------------HHHHHHhccCcHHHHHHHHHHhHhhcCCCCCc-----chHHHHHHHHHhcCChHHHH
Q 003148 568 GIKPDSIV-FV------------GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI-----VHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 568 g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~ 629 (844)
..|+... +. .+...+...|++++|...++++.+ ..|+. ..+..+...|.+.|++++|.
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 -LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5666533 22 235668899999999999999988 33442 33556889999999999999
Q ss_pred HHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 630 DLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 630 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999988 4455 677999999999999999999999999999999998888888776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-17 Score=169.87 Aligned_cols=320 Identities=13% Similarity=0.123 Sum_probs=123.1
Q ss_pred hcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHH
Q 003148 286 KCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGY 365 (844)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 365 (844)
+.|++++|.++++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|+++++..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999997664 9999999999999999999999763 5777999999999999999999998887
Q ss_pred HHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccc
Q 003148 366 VLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLG 445 (844)
Q Consensus 366 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 445 (844)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+++.|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7774 45578889999999999999998888764 66668888888888888888888888766 36777777
Q ss_pred cccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHH
Q 003148 446 GLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQR 525 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 525 (844)
++.+.|++++|++.++++ .+..||..++.+|...|+++.|..
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~-------------------------------- 198 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM-------------------------------- 198 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH--------------------------------
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH--------------------------------
Confidence 888888888888777776 255666666666666666666632
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHh--ccCcHHHHHHHHHHhHhh
Q 003148 526 AMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACS--HGGLVNQGWHLFRSMTDI 602 (844)
Q Consensus 526 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~ 602 (844)
....+. .++.-...++..|.+.|++++|+.+++..+. ..+.. ..|+.+.-+++ +-+++.+.++.|. ++
T Consensus 199 ---~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ 269 (449)
T 1b89_A 199 ---CGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SR 269 (449)
T ss_dssp ---TTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TT
T ss_pred ---HHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HH
Confidence 222221 1111122355566666666666666666654 44433 34444444444 3344555555443 22
Q ss_pred cCCCC------CcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 603 HGVSP------QIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 603 ~~~~p------~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
-+++| +..+|.-++-+|...++++.|...+-+-+ |+..--..+.....+-.+.|.-.++..=-++..|
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 33555 46788899999999999999888766552 1211112223334444555544444443344444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=167.79 Aligned_cols=230 Identities=15% Similarity=0.124 Sum_probs=87.6
Q ss_pred chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 003148 65 SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFV 144 (844)
Q Consensus 65 ~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 144 (844)
...+.||. ++|+ +++|...++ +.+.|+ +|..|..++.+.|++++|++.|.+. +|..+|..+
T Consensus 7 ~a~~~ll~---~~~~---ld~A~~fae-----~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V 67 (449)
T 1b89_A 7 SAVQVLIE---HIGN---LDRAYEFAE-----RCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HccC---HHHHHHHHH-----hCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHH
Confidence 34444553 6777 999999999 665554 8999999999999999999999753 588899999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHH
Q 003148 145 LNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAV 224 (844)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 224 (844)
+.++...|++++|...+...++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|.
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp -------------------------------------------CHHHHTTTTTC---C----------------CTTTHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988888774 46688999999999999999999988864 78889999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003148 225 YLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRN 304 (844)
Q Consensus 225 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 304 (844)
.+|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ 206 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VH 206 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC
Confidence 999977 37888888888888888888888776 367888888888888888888877666544 23
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLH 334 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 334 (844)
..-...++..|.+.|++++|+.+|+..+..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 333445777888888888888888777643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=167.54 Aligned_cols=285 Identities=13% Similarity=0.044 Sum_probs=193.9
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCCh
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMF 453 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 453 (844)
+..++..+...+...|++++|..+|+++.+.++ .+...+..++..+...|++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------~~~~~~~~~~~~~~~~~~~ 72 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP----------------------------FHASCLPVHIGTLVELNKA 72 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------TCTTTHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------------------CChhhHHHHHHHHHHhhhH
Confidence 334445556666666666666666666543110 1223333444455555555
Q ss_pred HHHHHHHHHHHhCCccc-ChhhHHhHHHHccccC-chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHH
Q 003148 454 EEAMELFRVMLSERIKV-DRVTMVGVASACGYLG-ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFR 531 (844)
Q Consensus 454 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 531 (844)
++|+.+++++.+. .| +...+..+...+...| +.+.|...+..+.+.. +.+...+..+...|...|++++|...|+
T Consensus 73 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 73 NELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp HHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666555542 22 2334444445555555 5666666665555443 2345567777888888888888888888
Q ss_pred hcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC--
Q 003148 532 RME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGV-- 605 (844)
Q Consensus 532 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-- 605 (844)
++. ..+...|..+...|...|++++|++.|+++.+ ..|+. ..+..+...+...|++++|..+++++.+...-
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 765 33456777788888888888888888888887 55654 67777888888888888888888888763211
Q ss_pred -----CCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 606 -----SPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 606 -----~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
......+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 233567888888888999999999888887 3334 566888888888888999999999999999999888888
Q ss_pred HHHHHHH-HHcCCc
Q 003148 679 VLLSNIY-ASAGKW 691 (844)
Q Consensus 679 ~~l~~~~-~~~g~~ 691 (844)
..++.++ ...|+.
T Consensus 308 ~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 308 TMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhCch
Confidence 8888877 444543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=165.35 Aligned_cols=262 Identities=11% Similarity=0.032 Sum_probs=224.2
Q ss_pred CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHh
Q 003148 435 RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALV 514 (844)
Q Consensus 435 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 514 (844)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|+.++|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355566677778888899999999999987753 2244556667777888999999999999998875 34677888899
Q ss_pred hhHHhcC-CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH
Q 003148 515 DMFARCG-DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV 589 (844)
Q Consensus 515 ~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 589 (844)
..|...| ++++|...|++.. ..+...|..+...|...|++++|+..|+++.+ ..|+. ..+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999876 34577899999999999999999999999998 55654 6777788899999999
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCChHHHHHHHHHHHhcCCH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PV----------EPNDVIWGSLLAACQKHQNV 657 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~ 657 (844)
++|..+++++.+ ..|+ ...+..++..|.+.|++++|.+.++++ .. ..+..+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999987 4454 678889999999999999999999877 11 23456899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 658 DIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999987654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=172.62 Aligned_cols=276 Identities=13% Similarity=0.048 Sum_probs=209.5
Q ss_pred hcCCHHHHHH-HHhhCCC---C----CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchH
Q 003148 418 KNGDVESARE-VFSEMPG---R----DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALD 489 (844)
Q Consensus 418 ~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 489 (844)
..|++++|.+ .|++... . +...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455566655 5554332 1 24456667777777888888888888877652 224456666777777788888
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHH---------------HHHHHHhc
Q 003148 490 LAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTA---------------AIGAMAME 551 (844)
Q Consensus 490 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~~ 551 (844)
.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.. .+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888777765 34667778888888888888888888887652 22222221 13334488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHH
Q 003148 552 GNGEQAVELFNEMLRQGIKPD---SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 552 g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e 627 (844)
|++++|+..|+++++ ..|+ ..++..+...+...|++++|..+++++.+ +.|+ ...|..++..|.+.|++++
T Consensus 195 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 195 SLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 5566 57888899999999999999999999988 3454 6789999999999999999
Q ss_pred HHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHHcCCchHH
Q 003148 628 ALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK-----------SGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 628 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 694 (844)
|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +..|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 4445 56789999999999999999999999999999887 67899999999999999999
Q ss_pred HHHHHH
Q 003148 695 ARVRLQ 700 (844)
Q Consensus 695 ~~~~~~ 700 (844)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 998753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-14 Score=162.93 Aligned_cols=405 Identities=9% Similarity=0.037 Sum_probs=270.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003148 273 NALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSA 349 (844)
Q Consensus 273 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 349 (844)
|...+..++. +.+.|++++|+.+|+++.+. +...|...+..+.+.|++++|.++|++.+... |+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 5566666666 36677777777777776552 34467777777777777777777777777653 555444444432
Q ss_pred H-hhcCChhhHHH----HHHHHHHh-CCCc-hhhHHHHHHHHHHH---------cCCHHHHHHHHhhcCC-CCc---chH
Q 003148 350 S-AQLGDLLCGRM----CHGYVLRN-GLEG-WDSICNTMIDMYMK---------CGKQEMACRIFDHMSN-KTV---VSW 409 (844)
Q Consensus 350 ~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~Li~~y~~---------~g~~~~A~~~f~~m~~-~~~---~~~ 409 (844)
. ...|+.+.+++ ++...++. |..+ +..+|...+....+ .|+++.|+.+|++... |+. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 34456665554 55555443 5443 45667777776655 7889999999998775 321 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHH------HhCC---cccCh--------
Q 003148 410 NSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVM------LSER---IKVDR-------- 472 (844)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g---~~p~~-------- 472 (844)
..........|. ..+..++.. ..+++.+|..+++++ .+.. +.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 322221111111 111111111 234456666555542 1111 22321
Q ss_pred hhHHhHHHHcc----ccCch----HHHHHHHHHHHHhCCCCchhHHhHHhhhHHh-------cCCHH-------HHHHHH
Q 003148 473 VTMVGVASACG----YLGAL----DLAKWIYAYIEKNGIHCDMQLATALVDMFAR-------CGDPQ-------RAMQVF 530 (844)
Q Consensus 473 ~t~~~ll~a~~----~~~~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~~ 530 (844)
..|...+.-.. ..++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 12222221111 11222 35667787777753 4467788888888775 69987 899999
Q ss_pred HhcCC---C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcC
Q 003148 531 RRMEK---R-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHG 604 (844)
Q Consensus 531 ~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 604 (844)
++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|+.+|++..+
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--- 384 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--- 384 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 98763 3 578999999999999999999999999999 67765 3688888888899999999999999987
Q ss_pred CCCC-cchHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----
Q 003148 605 VSPQ-IVHYGCMVDL-LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG---- 676 (844)
Q Consensus 605 ~~p~-~~~~~~li~~-~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 676 (844)
..|. ...|...+.+ +...|+.++|.++|++. ...| +...|..++......|+.++|..+++++++..|.++.
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 3343 3333333323 34689999999999987 4445 5779999999999999999999999999998877665
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|...+......|+.+++.++.+++.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777778888899999999999988764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=156.02 Aligned_cols=270 Identities=8% Similarity=0.068 Sum_probs=188.8
Q ss_pred HHHcCCHHHHHHHHhhcCCCCc----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSNKTV----VSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELF 460 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 460 (844)
....|++..|+..++.....++ .....+..+|...|+++.|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456777777777766554222 122334555666666655555554432223334444444444455555555555
Q ss_pred HHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhH
Q 003148 461 RVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSA 540 (844)
Q Consensus 461 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~ 540 (844)
+++...+..|+ +...+..+...|.+.|++++|.+.|++ ..+...
T Consensus 89 ~~ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~ 132 (291)
T 3mkr_A 89 DREMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLEC 132 (291)
T ss_dssp HHHHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHH
T ss_pred HHHHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHH
Confidence 55444333332 444556677888999999999999998 567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH---HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF---VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
|..++..|.+.|+.++|++.|+++.+ ..|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~ 208 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 99999999999999999999999998 46776422 12334445669999999999999984 3345778999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDI-AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
+|.+.|++++|++.++++ ...| +..+|..++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~ 284 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRL 284 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHH
Confidence 999999999999999997 5556 56789999999999998865 6789999999999987443 445666666665
Q ss_pred HHHH
Q 003148 695 ARVR 698 (844)
Q Consensus 695 ~~~~ 698 (844)
..-|
T Consensus 285 ~~~~ 288 (291)
T 3mkr_A 285 VLQY 288 (291)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-14 Score=160.64 Aligned_cols=366 Identities=12% Similarity=0.046 Sum_probs=234.0
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CceehHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCChhhH
Q 003148 273 NALMVNALVDMYMK----CGAVDTAKQLFGECKDR-NLVLCNTIMSNYVR----LGLAREALAILDEMLLHGPRPDRVTM 343 (844)
Q Consensus 273 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 343 (844)
++.....|...|.. .+++++|...|++..+. +...+..+...|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444455555555 56666666666554332 44455555555555 566666666666655543 22233
Q ss_pred HHHHHHHhh----cCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCcchHHHHHHH
Q 003148 344 LSAVSASAQ----LGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMK----CGKQEMACRIFDHMSNKTVVSWNSLIAG 415 (844)
Q Consensus 344 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~~~~~~~~li~~ 415 (844)
..+-..+.. .++.+.|...+....+.| ++..+..|..+|.. .++.++|...|++..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------- 180 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----------- 180 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------
Confidence 233333333 344444444444444433 23334445555554 45566666655554321
Q ss_pred HHhcCCHHHHHHHHhhCCCCCccccccccccccc----cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccc----cCc
Q 003148 416 LIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ----ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGY----LGA 487 (844)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~ 487 (844)
.+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++
T Consensus 181 -------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 181 -------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp -------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred -------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 123333333333333 556666666666665543 23333333333332 567
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhc-----CChHHH
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFAR----CGDPQRAMQVFRRMEK-RDVSAWTAAIGAMAME-----GNGEQA 557 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A 557 (844)
.++|...+....+.+ +...+..|..+|.. .++.++|...|+...+ .+...+..+...|... ++.++|
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 777777777776654 34455666677776 8899999999988764 4677888888888887 899999
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccC---cHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCChHHHHH
Q 003148 558 VELFNEMLRQGIKPDSIVFVGVLTACSHGG---LVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR----AGLLGEALD 630 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~ 630 (844)
+..|++..+.| +...+..+...+...| +.++|.++|++..+ . .+...+..|..+|.. .+++++|.+
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999864 4456667777777656 78999999999987 2 356788889999988 899999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHH
Q 003148 631 LIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPE---KSGVHVLLSNIYAS 687 (844)
Q Consensus 631 ~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 687 (844)
.+++.--..+...+..|...+.. .+|.++|...++++++.+|+ ++.....|+.++..
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99987323367788888888887 89999999999999999854 66666667666553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=171.11 Aligned_cols=258 Identities=12% Similarity=-0.004 Sum_probs=198.7
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVD 515 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (844)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456777777777888888888888877642 2245667777777777888888888888777764 335677888888
Q ss_pred hHHhcCCHHHHHHHHHhcCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhHHHHH
Q 003148 516 MFARCGDPQRAMQVFRRMEKRD-------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD---SIVFVGV 579 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~l 579 (844)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++++ ..|+ ..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHHH
Confidence 8889999999999888876321 12233457788899999999999999998 4564 5788888
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN 656 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 656 (844)
...+...|++++|..+|+++.+ ..|+ ...|..++.+|.+.|++++|++.++++ ...| +..+|..+...+...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT---VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 8999999999999999999988 3444 778899999999999999999999987 4455 47789999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 657 VDIAAYAAERITELDPE------------KSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
+++|...+++++++.|+ +...+..|+.++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998876 356788999999999999988877644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=163.41 Aligned_cols=255 Identities=17% Similarity=0.106 Sum_probs=204.8
Q ss_pred ccccCChHHHHH-HHHHHHhCCc-cc--ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCC
Q 003148 447 LTQENMFEEAME-LFRVMLSERI-KV--DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGD 522 (844)
Q Consensus 447 ~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~ 522 (844)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...+..+.+.. +.+...+..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8887654321 11 34567778888899999999999999999875 4467888899999999999
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH----------------HHHHH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVG----------------VLTAC 583 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----------------ll~a~ 583 (844)
+++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+...... .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999876 45788999999999999999999999999999 5565532221 23344
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 661 (844)
...|++++|..+|+++.+...-.++...+..++.+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4899999999999999883322224778899999999999999999999987 4445 5679999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..++++++++|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=165.04 Aligned_cols=231 Identities=14% Similarity=0.077 Sum_probs=196.2
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
+...+......+...|+++.|..++..+++.. +.+...+..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777888899999999999999998876 4468889999999999999999999999876 4568899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChh-HH----------HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSI-VF----------VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMV 616 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 616 (844)
|...|++++|+..|+++++ ..|+.. .+ ..+...+...|++++|..+++++.+...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 556542 22 3347788999999999999999998433222577899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
.+|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 4445 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003148 695 ARVRLQMKEQ 704 (844)
Q Consensus 695 ~~~~~~m~~~ 704 (844)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-15 Score=164.48 Aligned_cols=240 Identities=9% Similarity=-0.048 Sum_probs=149.5
Q ss_pred cCChHHHHHHHHHHHhCCcccCh-hhHHhHHHHc----cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDR-VTMVGVASAC----GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQ 524 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 524 (844)
.++.++|++.|++..+. .|+. ..+..+...+ ...++.++|.+.+....+.. +.+..++..+...|.+.|+++
T Consensus 188 ~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp SCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchH
Confidence 34555666666665542 3332 2232222222 23456667777777666654 335566677777788888888
Q ss_pred HHHHHHHhcC---CCCHhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 525 RAMQVFRRME---KRDVSAWTAAIGAMAM-------------------EGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 525 ~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+|...|++.. +.+..+|..+...|.. .+..++|+..|++..+ ..|+. .++..+..
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHH
Confidence 8888877665 3345566666555432 2345778888888887 56665 67888888
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCCcc----hHHHHHHH-HHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcC
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQIV----HYGCMVDL-LGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQ 655 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~-~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 655 (844)
.+...|++++|..+|++..+ +.|+.. .+..+... +...|+.++|++.+++. .+.|+...+...
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------- 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------- 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred HHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence 99999999999999999887 344422 22333332 35678999999999887 677776544332
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-
T Consensus 412 -~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 412 -KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp -HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34556778888999999999999999999999999999999999988764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-15 Score=152.69 Aligned_cols=242 Identities=11% Similarity=0.039 Sum_probs=187.3
Q ss_pred ccCChHHHHHHHHHHHhCCcccCh--hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDR--VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRA 526 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 526 (844)
..|++.+|+..+++... ..|+. .....+..++...|+++.+...+.. .-+|+......+...|.+.|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 45666666666655432 23332 2334445666667777666654422 2345667778888999999999999
Q ss_pred HHHHHhcC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 527 MQVFRRME----KR-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 527 ~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.+.++++. .| +...|..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|...|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999864 23 566788888999999999999999987 34557888889999999999999999999998
Q ss_pred hcCCCCCcchH---HHHHHHHHhcCChHHHHHHHHhC-C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 602 IHGVSPQIVHY---GCMVDLLGRAGLLGEALDLIKSM-P-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 602 ~~~~~p~~~~~---~~li~~~~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
..|+.... ..++..+...|++++|..+|+++ . .+.+...|+.+..++...|++++|+..++++++++|+++.
T Consensus 159 ---~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 159 ---QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 34664211 23445555669999999999998 3 3346779999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchH-HHHHHHHHHhCC
Q 003148 677 VHVLLSNIYASAGKWTN-VARVRLQMKEQG 705 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 705 (844)
++..++.++...|++++ +.++++++.+..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987 568888887653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=156.05 Aligned_cols=414 Identities=11% Similarity=0.030 Sum_probs=261.8
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHH
Q 003148 203 NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVD 282 (844)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 282 (844)
|..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|+.+++.+++.. |++..+..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5667888887 477888888888888887642 2244457777777777788888888888777654 45556665554
Q ss_pred -HHHhcCCHHHHHH----HHHhcC-----C-CCceehHHHHHHHHH---------cCChHHHHHHHHHHHhcCCCCCh--
Q 003148 283 -MYMKCGAVDTAKQ----LFGECK-----D-RNLVLCNTIMSNYVR---------LGLAREALAILDEMLLHGPRPDR-- 340 (844)
Q Consensus 283 -~y~~~g~~~~A~~----~f~~m~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~-- 340 (844)
.+...|+.+.|++ +|++.. + .+...|...+....+ .|++++|..+|++.++. |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 2234566665554 555431 1 234456666655443 56667777777776652 321
Q ss_pred -hhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhc
Q 003148 341 -VTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKN 419 (844)
Q Consensus 341 -~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 419 (844)
..|..........+. .+...++. .+.++++.|..++..+..
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~---------------- 206 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYET---------------- 206 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHH----------------
Confidence 111111100000000 00011110 122344555544443100
Q ss_pred CCHHHHHHHHhhCC---CCC--------cccccccccccc----ccCCh----HHHHHHHHHHHhCCccc-ChhhHHhHH
Q 003148 420 GDVESAREVFSEMP---GRD--------HISWNTMLGGLT----QENMF----EEAMELFRVMLSERIKV-DRVTMVGVA 479 (844)
Q Consensus 420 g~~~~A~~~~~~m~---~~~--------~~~~~~li~~~~----~~g~~----~~A~~l~~~m~~~g~~p-~~~t~~~ll 479 (844)
..+.++... .++ ...|...+.-.. ..++. ++++.+|++.... .| +...|....
T Consensus 207 -----~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~ 279 (530)
T 2ooe_A 207 -----VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAA 279 (530)
T ss_dssp -----HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred -----HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 000000000 000 012222211110 11222 4677788887764 34 344555555
Q ss_pred HHccc-------cCchH-------HHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-CH-hHH
Q 003148 480 SACGY-------LGALD-------LAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KR-DV-SAW 541 (844)
Q Consensus 480 ~a~~~-------~~~~~-------~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~-~~~ 541 (844)
..+.. .|+++ .|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++. .| +. ..|
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 359 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH
Confidence 54443 67776 888888888763334568889999999999999999999999876 33 33 589
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTA-CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 618 (844)
..++..+.+.|+.++|.++|++.++ ..|+. ..+...... +...|+.++|..+|+...+. .|+ ...|..+++.
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHH
Confidence 9999999999999999999999998 44543 333333222 33589999999999999883 354 7789999999
Q ss_pred HHhcCChHHHHHHHHhC----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 619 LGRAGLLGEALDLIKSM----PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++++..|+
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999999987 23332 348999999999999999999999999998885
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=182.01 Aligned_cols=132 Identities=11% Similarity=0.149 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcC-------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH
Q 003148 170 DRDVFVENCLINFYGECGDIVDGRRVFDEMS-------ERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM 242 (844)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 242 (844)
..-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445789999999999999999999998764 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 243 VCVISACAKLQNL-ELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 243 ~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++.++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 9999999999985 7899999999999999999999999988888766666666654443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-13 Score=153.90 Aligned_cols=352 Identities=11% Similarity=0.019 Sum_probs=255.6
Q ss_pred CCceehHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChhhHHHHHHHHHHhCCCch
Q 003148 303 RNLVLCNTIMSNYVR----LGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQ----LGDLLCGRMCHGYVLRNGLEGW 374 (844)
Q Consensus 303 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~ 374 (844)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 355666666666666 677777777777766543 22333333333333 445555555555544443 2
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccc-
Q 003148 375 DSICNTMIDMYMK----CGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ- 449 (844)
Q Consensus 375 ~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~- 449 (844)
+..+..|..+|.. .+++++|...|++..+. .+...+..+...|..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------------------------------GRDSGQQSMGDAYFEG 160 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHcC
Confidence 2333344444444 44445554444443321 233444455555544
Q ss_pred ---cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccc----cCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh---
Q 003148 450 ---ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGY----LGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR--- 519 (844)
Q Consensus 450 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k--- 519 (844)
.+++++|++.|++..+.| +...+..+-..+.. .++.++|...+....+.+ +...+..|..+|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 678999999999988765 45555555555555 789999999999998876 56677788888886
Q ss_pred -cCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-----Cc
Q 003148 520 -CGDPQRAMQVFRRME-KRDVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHG-----GL 588 (844)
Q Consensus 520 -~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~ 588 (844)
.++.++|...|++.. ..+...+..+...|.. .++.++|++.|++..+.| +...+..+...+... ++
T Consensus 235 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 899999999999876 4567788888888888 899999999999998754 445666777777776 89
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC---ChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAG---LLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAA 661 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~ 661 (844)
.++|..+|++..+ . .+...+..|..+|.+.| +.++|.+.|++.-...+...|..|...+.. .++.++|.
T Consensus 312 ~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 312 REQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999987 2 23567788888888867 789999999988323578889999998888 89999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYAS----AGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 705 (844)
..++++.+.. ++..+..|+.+|.. .+++++|.+.+++..+.+
T Consensus 388 ~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 388 IWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999864 57789999999999 899999999999998875
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=157.47 Aligned_cols=257 Identities=11% Similarity=0.017 Sum_probs=196.0
Q ss_pred cccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhH
Q 003148 438 ISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMF 517 (844)
Q Consensus 438 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 517 (844)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+...+..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344455556666677777777777766532 1244455556666667777777777777776654 33566777778888
Q ss_pred HhcCCHHHHHHHHHhcCC---CCHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEK---RDVSAWTAA--------------IG-AMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVG 578 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 578 (844)
.+.|++++|.+.|+++.+ .+...+..+ .. .+...|++++|+..++++.+ ..|+ ...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 888888888888877652 222333333 22 37778899999999999998 4554 477888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
+...+...|++++|..+++++.+ ..|+ ...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 88899999999999999999987 3444 678889999999999999999999987 4445 5678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 656 NVDIAAYAAERITELDPE------------KSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
++++|...+++++++.|+ ++..+..++.+|...|++++|.+++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999998 6788999999999999999999988643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-16 Score=177.75 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=131.5
Q ss_pred CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 003148 502 GIHCDMQLATALVDMFARCGDPQRAMQVFRRME-------KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI 574 (844)
Q Consensus 502 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 574 (844)
....-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 345556789999999999999999999997754 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCc-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCC------hHHHHHH
Q 003148 575 VFVGVLTACSHGGL-VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPN------DVIWGSL 647 (844)
Q Consensus 575 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~------~~~~~~l 647 (844)
||+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++..++ .|+ ..+-.-|
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHH
Confidence 99999999999997 5789999999998 899999999999998888776555555553333 222 2233334
Q ss_pred HHHHHhcC---------CHHHHHHHHHHHHh
Q 003148 648 LAACQKHQ---------NVDIAAYAAERITE 669 (844)
Q Consensus 648 l~~~~~~g---------~~~~a~~~~~~~~~ 669 (844)
...|.+.+ ..++-...+++-++
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 45555544 23555555555553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=143.20 Aligned_cols=194 Identities=16% Similarity=0.069 Sum_probs=159.7
Q ss_pred CCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHH
Q 003148 504 HCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGV 579 (844)
Q Consensus 504 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 579 (844)
+++...+..+...|.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4566777888889999999999999999876 34678899999999999999999999999999 67876 678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHH
Q 003148 580 LTACSHG-----------GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGS 646 (844)
Q Consensus 580 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ 646 (844)
..++... |++++|...+++..+ +.|+ ...+..+..+|...|++++|++.|+++ ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999988 5676 678889999999999999999999987 22267889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=139.31 Aligned_cols=216 Identities=11% Similarity=0.010 Sum_probs=176.7
Q ss_pred HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C----C----HhHHHHH
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK--R----D----VSAWTAA 544 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~----~----~~~~~~l 544 (844)
+..+...+...|++++|...+..+.+.. .+...+..+...|...|++++|...|++..+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344445555666666666666666655 5667777788888888888888888887652 1 1 5778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG 623 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 623 (844)
...|...|++++|++.|+++.+ +.|+.. .+...|++++|...++.+.+ ..|+ ...+..++..|.+.|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999998 566643 45567889999999999887 4454 667888999999999
Q ss_pred ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 624 LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 624 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 4444 57789999999999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 003148 702 KEQ 704 (844)
Q Consensus 702 ~~~ 704 (844)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=140.45 Aligned_cols=250 Identities=10% Similarity=-0.080 Sum_probs=201.8
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCc--cc-ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERI--KV-DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDM 516 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (844)
+..+...+...|++++|+..|+++.+... .| +..++..+...+...|++++|...+..+.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 86 (275)
T 1xnf_A 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIY 86 (275)
T ss_dssp GGGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred CcceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 33444566778999999999999988632 22 34667778888899999999999999998875 3467888999999
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGW 593 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 593 (844)
|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|.
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999877 34678999999999999999999999999999 6788766666666677889999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 594 HLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-----DVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
.+++..... .|+......++..+...++.++|.+.++++ ...|+ ..+|..+...+...|++++|...++++
T Consensus 165 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 165 EVLKQHFEK---SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHH---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888772 333333345788888889999999999887 43332 468888999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 668 TELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 668 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
++++|++...+ +.++...|++++|.+.+
T Consensus 242 l~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 99999875443 66788889999887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=142.91 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=192.7
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHH
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMA 549 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 549 (844)
..+......+...|++++|..++..+.+.. +.+...+..+...|.+.|++++|...|+++. ..+...|..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 445556667788899999999999998875 3467788889999999999999999999876 446788999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHH--------------H--HHhccCcHHHHHHHHHHhHhhcCCCC-CcchH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVL--------------T--ACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHY 612 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--------------~--a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~ 612 (844)
..|++++|++.|+++.+ ..|+.......+ . .+...|++++|..+++++.+ ..| +...+
T Consensus 101 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~ 175 (327)
T 3cv0_A 101 NEHNANAALASLRAWLL--SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE---MNPNDAQLH 175 (327)
T ss_dssp HTTCHHHHHHHHHHHHH--TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH---HSTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh---hCCCCHHHH
Confidence 99999999999999998 566653322222 3 37788999999999999988 334 47788
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|+
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999987 4445 567899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhC
Q 003148 691 WTNVARVRLQMKEQ 704 (844)
Q Consensus 691 ~~~a~~~~~~m~~~ 704 (844)
+++|.+.++++.+.
T Consensus 256 ~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 256 YDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-12 Score=142.59 Aligned_cols=388 Identities=8% Similarity=-0.039 Sum_probs=206.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCC-cchhHHHHHHH
Q 003148 204 VVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMK-ANALMVNALVD 282 (844)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~ 282 (844)
...||.|...+...|++++|++.|++..+. .......... ....+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 345677777777777777777777665431 0000000011 23456777888
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C----CceehHHHHHHHHHc--CChHHHHHHHHHHHhcCCCCChhhH-HHHHH
Q 003148 283 MYMKCGAVDTAKQLFGECKD-------R----NLVLCNTIMSNYVRL--GLAREALAILDEMLLHGPRPDRVTM-LSAVS 348 (844)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 348 (844)
.|...|++++|...|++..+ + ...+++.+..++... +++++|++.|++..+. .|+...+ ..+..
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88888888888887765431 1 123444444455543 4678888888888765 4544322 22222
Q ss_pred H---HhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCC
Q 003148 349 A---SAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMK----CGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGD 421 (844)
Q Consensus 349 ~---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 421 (844)
+ ....++.+.+.+.+...++.... +..++..+...+.+ .|+.++|.+.+++...
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~------------------ 241 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE------------------ 241 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHH------------------
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------------------
Confidence 2 23344555555555555544221 22223333222222 2334444444443322
Q ss_pred HHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChh-hHHhHHHHccccCchHHHHHHHHHHHH
Q 003148 422 VESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRV-TMVGVASACGYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 422 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~ 500 (844)
....+...|..+...|...|++++|+..|++..+. .|+.. ++..+..++... +... ..
T Consensus 242 ----------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~-----~~~~----~~ 300 (472)
T 4g1t_A 242 ----------KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAK-----VFQV----MN 300 (472)
T ss_dssp ----------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH-----HHHH----HH
T ss_pred ----------hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH-----HHHh----hh
Confidence 01134556777888888899999999999888764 45433 333222222110 0000 00
Q ss_pred hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---
Q 003148 501 NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI--- 574 (844)
Q Consensus 501 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--- 574 (844)
. ............+..+.|...|+... ..+...|..+...|...|++++|++.|++.++. .|+..
T Consensus 301 ~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~ 371 (472)
T 4g1t_A 301 L-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQ 371 (472)
T ss_dssp C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHH
T ss_pred H-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHH
Confidence 0 00111111222344677888887665 445678999999999999999999999999984 45432
Q ss_pred -HHHHHHH-HHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH
Q 003148 575 -VFVGVLT-ACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA 650 (844)
Q Consensus 575 -t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 650 (844)
.+..+.. ...+.|+.++|+..|++..+ +.|+....... .+.+.+++++. ...| +..+|..|...
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2333333 34578999999999999988 66764332222 23344444443 2334 56799999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
+...|++++|++.+++++++.|.+|.+...+|
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999887766554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-13 Score=137.88 Aligned_cols=237 Identities=14% Similarity=0.042 Sum_probs=145.0
Q ss_pred cccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCC
Q 003148 446 GLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGD 522 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~ 522 (844)
.+...|++++|+..|++..+. .|+ ...+..+..++...|+++.|...+..+.+....+ ....+..+...|.+.|+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 344444455555555544432 221 2234444444444555555555554444422111 12235566677777777
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
+++|.+.|++.. ..+...|..+...|...|++++|++.|++.++ ..|+. ..+..+...+...+++++|...|++
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777655 33556777777777778888888888877776 45655 3444444244445588888888887
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCCh------HHHHHHHHHHHhcCCHHHHHHHH
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGL---LGEALDLIKSM----PVEPND------VIWGSLLAACQKHQNVDIAAYAA 664 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~---~~eA~~~~~~m----~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~ 664 (844)
+.+ ..|+ ...+..+..++...|+ +++|...++++ ...|+. .+|..+...+...|++++|...+
T Consensus 168 a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 168 VLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776 3444 5566667777777776 66677766665 122332 46777888889999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 665 ERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 665 ~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
+++++++|+++.+...+..+....+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999888777766655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=136.92 Aligned_cols=231 Identities=12% Similarity=0.063 Sum_probs=177.7
Q ss_pred ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCC--Cc----hhHHhH
Q 003148 439 SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIH--CD----MQLATA 512 (844)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~----~~~~~~ 512 (844)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555666677777777777766655 55666666666777777777777777666554311 11 567788
Q ss_pred HhhhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH
Q 003148 513 LVDMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV 589 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 589 (844)
+...|.+.|++++|...|++.. .++ ...+...|++++|+..++++.. ..|+. ..+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 8899999999999999998876 333 2346677889999999999998 66765 5788888899999999
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
++|...++++.+ ..|+ ...|..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...+++
T Consensus 156 ~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999988 3343 678889999999999999999999987 4445 467899999999999999999999999
Q ss_pred HHhcC------CCCCchHHHHHH
Q 003148 667 ITELD------PEKSGVHVLLSN 683 (844)
Q Consensus 667 ~~~~~------p~~~~~~~~l~~ 683 (844)
++++. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99998 777666555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-12 Score=129.97 Aligned_cols=195 Identities=10% Similarity=-0.002 Sum_probs=164.6
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTA 582 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 582 (844)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHH
Confidence 5567778888888999999999988765 34677888889999999999999999999988 4554 4677888888
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 659 (844)
+...|++++|.++++++.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998876 444554 667888889999999999999999887 3344 56788888889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999888999999999999999999999988765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-12 Score=125.42 Aligned_cols=197 Identities=15% Similarity=0.076 Sum_probs=166.6
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 580 (844)
.+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 356677788888999999999999998765 44677888899999999999999999999988 4564 46788888
Q ss_pred HHHhcc-CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC
Q 003148 581 TACSHG-GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN 656 (844)
Q Consensus 581 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 656 (844)
..+... |++++|..+++++.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 889999 999999999999887 434444 567888899999999999999999887 4444 46788888889999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 657 VDIAAYAAERITELDP-EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88888888999999999999999999888754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=130.89 Aligned_cols=196 Identities=11% Similarity=0.083 Sum_probs=146.9
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 580 (844)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHHHHH
Confidence 345566677778888899999998888775 34577888888899999999999999999888 4554 46777888
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHH
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 658 (844)
..+...|++++|.++++++.+.. +.+...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 88899999999999999988722 224667888889999999999999999887 3334 5678888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999889999999999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-12 Score=122.15 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=138.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGC 614 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 614 (844)
+...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|...+..... ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 456788888888888999999999998888 67766 5778888888889999999999988877 3344 556777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
+...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788888999999999998887 4445 56688888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 003148 693 NVARVRLQMKEQ 704 (844)
Q Consensus 693 ~a~~~~~~m~~~ 704 (844)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-12 Score=136.01 Aligned_cols=223 Identities=9% Similarity=0.030 Sum_probs=188.6
Q ss_pred hHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCC-HHHHHHHHHhcC---CCCHhHHHHHHHHHH
Q 003148 474 TMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGD-PQRAMQVFRRME---KRDVSAWTAAIGAMA 549 (844)
Q Consensus 474 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~ 549 (844)
.+..+..++...|+.++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|+++. ..+...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34445555667788888888888888765 3467788889999999997 999999999887 457889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh-cCChH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGR-AGLLG 626 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~-~g~~~ 626 (844)
..|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..++++++ +.|+ ...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 78876 6888999999999999999999999998 5666 7789999999999 66668
Q ss_pred HH-----HHHHHhC-CCCC-ChHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC--------
Q 003148 627 EA-----LDLIKSM-PVEP-NDVIWGSLLAACQKHQ--NVDIAAYAAERITELDPEKSGVHVLLSNIYASAG-------- 689 (844)
Q Consensus 627 eA-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 689 (844)
+| ++.++++ .+.| +...|..+...+...| ++++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4777776 5566 5679999999998888 689999999998 999999999999999999875
Q ss_pred -CchHHHHHHHHH-Hh
Q 003148 690 -KWTNVARVRLQM-KE 703 (844)
Q Consensus 690 -~~~~a~~~~~~m-~~ 703 (844)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=136.47 Aligned_cols=343 Identities=9% Similarity=-0.029 Sum_probs=204.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCC
Q 003148 311 IMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGK 390 (844)
Q Consensus 311 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 390 (844)
+...+.+.|++++|+++|++..+.|- ++. + ..|..+|...|+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A--~-----------------------------------~~Lg~~y~~~g~ 50 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEA--Q-----------------------------------VGLADIQVGTRD 50 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTG--G-----------------------------------GTCC--------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHH--H-----------------------------------HHHHHHHHccCC
Confidence 45566777788888888877766652 221 1 122233333444
Q ss_pred H---HHHHHHHhhcCCCCcchHHHHHHHHHhcC-----CHHHHHHHHhhCCCC-CccccccccccccccCCh---HHHHH
Q 003148 391 Q---EMACRIFDHMSNKTVVSWNSLIAGLIKNG-----DVESAREVFSEMPGR-DHISWNTMLGGLTQENMF---EEAME 458 (844)
Q Consensus 391 ~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~ 458 (844)
. ++|...|++..+.++..+..+...+...+ +.++|.+.|++..++ +...+..+...|...+.. .++.+
T Consensus 51 ~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 51 PAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 4 55555555544444444444544333333 445555555544332 333444454444443332 23455
Q ss_pred HHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC---CHHHHHHHHHhcCC
Q 003148 459 LFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG---DPQRAMQVFRRMEK 535 (844)
Q Consensus 459 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~~ 535 (844)
.+.+....|. ......+...+...+.++.+........+.-...++..+..|..+|.+.| +.++|.+.|+...+
T Consensus 131 ~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 131 QISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 5555444432 23333344444444433333332222222222334447778888999999 88999999987763
Q ss_pred ---CCHhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhHHHHHHHH-H--hccCcHHHHHHHHHHhHhhcCC
Q 003148 536 ---RDVSAWTAAIGAMAME----GNGEQAVELFNEMLRQGIKPDSIVFVGVLTA-C--SHGGLVNQGWHLFRSMTDIHGV 605 (844)
Q Consensus 536 ---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~ 605 (844)
++...+..|...|... ++.++|++.|++.. .| +...+..+... + ...|+.++|..+|++..+ .|
T Consensus 208 ~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g- 281 (452)
T 3e4b_A 208 RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD- 281 (452)
T ss_dssp TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC-
Confidence 3444456777777554 68999999999986 22 33555556555 3 468899999999999887 33
Q ss_pred CCCcchHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCc
Q 003148 606 SPQIVHYGCMVDLLGRAG-----LLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g-----~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
+...+..|..+|. .| ++++|.+.|++.- .-+...+..|...|.. ..|.++|...++++.+ +.++.
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~ 355 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNS 355 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTT
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHH
Confidence 5667777888887 55 9999999999987 5567777777766655 3499999999999987 45677
Q ss_pred hHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 003148 677 VHVLLSNIYAS----AGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 677 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 706 (844)
....|+.+|.. ..+.++|..++++..+.|.
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 89999999985 4589999999999988774
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=145.42 Aligned_cols=192 Identities=10% Similarity=0.004 Sum_probs=170.2
Q ss_pred CchhHHhHHhhhHHhcCCH-HHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDP-QRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 580 (844)
.+...+..+...|...|++ ++|++.|++.. ..+...|..+...|.+.|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4667777888888889999 99999998775 34578999999999999999999999999999 678888888899
Q ss_pred HHHhcc---------CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC--
Q 003148 581 TACSHG---------GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA--------GLLGEALDLIKSM-PVEP-- 639 (844)
Q Consensus 581 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~~~~~m-~~~p-- 639 (844)
.++... |++++|...|+++.+ +.|+ ...|..+..+|... |++++|++.|+++ ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999 999999999999988 4565 77888999999998 9999999999998 5556
Q ss_pred --ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 640 --NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 640 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
+...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67799999999999999999999999999999999999999999999999999998765443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=137.44 Aligned_cols=241 Identities=12% Similarity=0.090 Sum_probs=192.4
Q ss_pred ccccccccccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCc-hHHHHHHHHHHHHhCCCCchhHHhHHhhh
Q 003148 439 SWNTMLGGLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGA-LDLAKWIYAYIEKNGIHCDMQLATALVDM 516 (844)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (844)
.|+.+...+.+.|++++|+..|++.+.. .|+ ...+..+..++...|+ +++|...+..+++... .+..+|+.+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 4555566666777777888887777663 453 3455566666677775 8888888888777653 367788888999
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc-cCcHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSH-GGLVNQ 591 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~~ 591 (844)
|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++ +.|+. ..|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999877 45788999999999999999999999999999 77876 678888888888 666577
Q ss_pred H-----HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC--ChHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcC-------
Q 003148 592 G-----WHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG--LLGEALDLIKSMPVEPN-DVIWGSLLAACQKHQ------- 655 (844)
Q Consensus 592 a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g------- 655 (844)
| +..++++.+ +.|+ ...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 588888887 6676 678888999999988 68999999988855664 567888888887764
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHH
Q 003148 656 -N-VDIAAYAAERI-TELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 656 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 687 (844)
+ +++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 99999998899888776643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-11 Score=123.65 Aligned_cols=198 Identities=15% Similarity=0.035 Sum_probs=155.6
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 554 (844)
+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 3334444455555555555554443 2345667778888888999999999888765 34677888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHH
Q 003148 555 EQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLI 632 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~ 632 (844)
++|++.|+++.+.+..|+. ..+..+...+...|++++|..+++++.+ ..|+ ...+..++.+|.+.|++++|.+.+
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999875456655 6778888889999999999999999987 3344 677889999999999999999999
Q ss_pred HhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 633 KSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 633 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
+++ ...| +...|..+...+...|+.++|...++++++..|+++....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 199 DLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 987 4445 5667888888899999999999999999999999875543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=128.38 Aligned_cols=211 Identities=13% Similarity=0.128 Sum_probs=149.9
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVD 515 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (844)
....|..+...+...|++++|+..|+++.+. .| .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3456777777777888888888888777653 22 23445556667
Q ss_pred hHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHH
Q 003148 516 MFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQ 591 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 591 (844)
.|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHH
Confidence 7777888888888887665 34677888888889999999999999999888 4454 4677788888899999999
Q ss_pred HHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
|..+++++.+ ..| +...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...+++++
T Consensus 144 A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVE---LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999887 334 4667888999999999999999999887 3334 56789999999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHH
Q 003148 669 ELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 669 ~~~p~~~~~~~~l~~~~~~ 687 (844)
+++|+++..+..++.+...
T Consensus 221 ~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHCTTCHHHHHHHTC----
T ss_pred ccCcchHHHHHHHHHHHhh
Confidence 9999998877776655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-11 Score=121.89 Aligned_cols=214 Identities=9% Similarity=-0.071 Sum_probs=158.8
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh----cCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHh----
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR----CGDPQRAMQVFRRME-KRDVSAWTAAIGAMAM---- 550 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~---- 550 (844)
..+...+++++|...+....+. .+...+..+..+|.. .|++++|...|++.. ..+...|..+...|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCc
Confidence 3334444555555555554442 233455556667777 788888888887765 3366777778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----c
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH----GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR----A 622 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~ 622 (844)
.+++++|++.|++..+.+ +...+..+...|.. .|++++|..+|++..+ .+ +...+..+..+|.+ .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCC
Confidence 888888888888888754 56677777778877 8888888888888877 22 45567777888887 8
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHH
Q 003148 623 GLLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS----AGKWTNV 694 (844)
Q Consensus 623 g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a 694 (844)
+++++|.+.+++.--..+...+..+...+.. .+++++|...++++++.+| +..+..|+.+|.. .|++++|
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 8889998888877212356677778888888 8899999999999998876 5678889999998 8999999
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
.+.+++..+.+
T Consensus 242 ~~~~~~a~~~~ 252 (273)
T 1ouv_A 242 IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99998887765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=135.93 Aligned_cols=368 Identities=11% Similarity=0.062 Sum_probs=181.0
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCH---HHHHHHHHhcCCCCceehHHHHHHHHHcC-----
Q 003148 248 ACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAV---DTAKQLFGECKDRNLVLCNTIMSNYVRLG----- 319 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g----- 319 (844)
.+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|.+.|++..+.+...+..+...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344555566666666555554 222333445555556666 77888887776666666777766555554
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhH---HHHHHHHHHhCCCchhhHHHHHHHHHHHcCC----HH
Q 003148 320 LAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCG---RMCHGYVLRNGLEGWDSICNTMIDMYMKCGK----QE 392 (844)
Q Consensus 320 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a---~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~----~~ 392 (844)
++++|++.|++..+.|... .+..+-..+...+..+.+ .+.+......| ++.....|..+|...+. .+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 6678888888877765432 333333444333332222 22222222222 23334445555555542 23
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccC---ChHHHHHHHHHHHhCCcc
Q 003148 393 MACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQEN---MFEEAMELFRVMLSERIK 469 (844)
Q Consensus 393 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~ 469 (844)
.+..+++.... .++..+..+...|...| +.++|++.|++..+.|..
T Consensus 163 ~a~~~~~~a~~-------------------------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~ 211 (452)
T 3e4b_A 163 DVERICKAALN-------------------------------TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV 211 (452)
T ss_dssp HHHHHHHHHTT-------------------------------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHc-------------------------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence 33333333333 33334444444455555 556666666666555411
Q ss_pred cChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhc----CCHHHHHHHHHhcCCCCHhHHHHHH
Q 003148 470 VDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARC----GDPQRAMQVFRRMEKRDVSAWTAAI 545 (844)
Q Consensus 470 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~----g~~~~A~~~~~~~~~~~~~~~~~li 545 (844)
+...+..|..+|... ++.++|...|+.....+...+..|.
T Consensus 212 ------------------------------------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg 255 (452)
T 3e4b_A 212 ------------------------------------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLA 255 (452)
T ss_dssp ------------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112112233333322 5666677766665533455666665
Q ss_pred HH-H--HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC-----cHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 546 GA-M--AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG-----LVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 546 ~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
.. | ...++.++|++.|++..+.| +...+..+...|. .| ++++|..+|++.. .-+...+..|..
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 55 3 34677777777777777755 4455555555555 44 7778888777654 233555666666
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH--
Q 003148 618 LLGR----AGLLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS-- 687 (844)
Q Consensus 618 ~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 687 (844)
+|.. ..+.++|.+.|++.--.-+......|...|.. ..|.++|...++++.+..+.. ....+..+...
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~ 404 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLT 404 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCC
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCC
Confidence 6655 33778888888776222234445555555543 457888888888888766533 33344443322
Q ss_pred cCCchHHHHHHHHHH
Q 003148 688 AGKWTNVARVRLQMK 702 (844)
Q Consensus 688 ~g~~~~a~~~~~~m~ 702 (844)
.++.++|.++.+.-+
T Consensus 405 ~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 405 PAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 234445555544433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-12 Score=128.30 Aligned_cols=218 Identities=12% Similarity=0.015 Sum_probs=181.9
Q ss_pred ccccCchHHHHHHHHHHHHhCC---CCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 003148 482 CGYLGALDLAKWIYAYIEKNGI---HCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE 555 (844)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 555 (844)
....+++++|...+..+.+... +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999987642 2256788889999999999999999999876 456889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 556 QAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
+|++.|+++++ ..|+ ...+..+...+...|++++|..+|+++.+ +.|+..........+.+.|++++|...+++
T Consensus 95 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999 5665 47888999999999999999999999988 557655555566677888999999999977
Q ss_pred C-C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M-P-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE----KSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
. . .+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..
T Consensus 170 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 170 HFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 6 2 233444454 677778888899999999999987764 36788999999999999999999999998753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-11 Score=119.83 Aligned_cols=203 Identities=11% Similarity=-0.010 Sum_probs=157.4
Q ss_pred HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAME 551 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 551 (844)
+..+...+...|+++.|...+..+.+.. +.+...+..+...|...|++++|.+.|+++. ..+...|..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3334444445555555555555555443 2345567778888888999999999888765 44677888899999999
Q ss_pred -CChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHH
Q 003148 552 -GNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 552 -g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 628 (844)
|++++|+..|+++.+.+..|+. ..+..+..++...|++++|..+++++.+ ..|+ ...+..++..|.+.|++++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHH
Confidence 9999999999999984445554 6788888899999999999999999987 3444 67788899999999999999
Q ss_pred HHHHHhC-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 629 LDLIKSM-PVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 629 ~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
.+.++++ ...| +...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999987 3334 566777777778899999999999999999999987665544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-12 Score=146.64 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=144.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGC 614 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 614 (844)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 356788888899999999999999999998 77876 6788888999999999999999999988 5676 678889
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
+..+|.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999987 66674 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003148 693 NVARVRLQMKE 703 (844)
Q Consensus 693 ~a~~~~~~m~~ 703 (844)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.9e-12 Score=122.69 Aligned_cols=182 Identities=16% Similarity=0.070 Sum_probs=115.4
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc-----
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAME----- 551 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----- 551 (844)
..+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Confidence 33334444444444444443332 2245555666667777777777777777654 33556677777777777
Q ss_pred ------CChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 552 ------GNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 552 ------g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
|++++|+..|++.++ +.|+. ..+..+..++...|++++|+..|+++.+. . .+...+..+..+|...|+
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTC
T ss_pred hhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCC
Confidence 888888888888887 66765 56777777888888888888888888773 2 556777788888888888
Q ss_pred hHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 625 LGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 625 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+++|.+.+++. ...| +...|..+...+...|++++|...+++.
T Consensus 167 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 167 LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888877 4445 4567777777888888888888777664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=118.21 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=145.4
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+..+|..+...|.+.|++++|++.|++.. +.+...|..+...|.+.|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 56788999999999999999999999876 45778999999999999999999999999988 56665 56777777
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 658 (844)
.+...++++++...+.+..+ +.|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 88899999999999999987 4454 677889999999999999999999988 5556 5678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 003148 659 IAAYAAERITELDPEKS 675 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~ 675 (844)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-11 Score=122.44 Aligned_cols=193 Identities=11% Similarity=0.038 Sum_probs=163.3
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHH
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTAC 583 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~ 583 (844)
........|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++.++.+..|+. ..|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34456677889999999999999876 345668999999999999999999999999984433332 3478888999
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 660 (844)
...|++++|..+|+++.+ ..|+ ...|..+...|...|++++|.+.+++. ...|+ ..+|..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 4454 678999999999999999999999998 56664 55777776466666799999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCC---chHHHHHHHHHHhC
Q 003148 661 AYAAERITELDPEKSGVHVLLSNIYASAGK---WTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 704 (844)
...+++++++.|+++..+..++.++...|+ +++|...++++.+.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999888764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=140.57 Aligned_cols=258 Identities=13% Similarity=0.011 Sum_probs=177.1
Q ss_pred ccccccCChHHHHHHHHHHHhCCcccCh-----hhHHhHHHHccccCchHHHHHHHHHHHHh----CC-CCchhHHhHHh
Q 003148 445 GGLTQENMFEEAMELFRVMLSERIKVDR-----VTMVGVASACGYLGALDLAKWIYAYIEKN----GI-HCDMQLATALV 514 (844)
Q Consensus 445 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~li 514 (844)
..+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +. .....++..+.
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 3344445555555555555443 2221 23344444455555555555555544332 11 22345666777
Q ss_pred hhHHhcCCHHHHHHHHHhcCCC---------CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC-
Q 003148 515 DMFARCGDPQRAMQVFRRMEKR---------DVSAWTAAIGAMAMEGN-----------------GEQAVELFNEMLRQ- 567 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~- 567 (844)
..|...|++++|...|++..+. ....|..+...|...|+ +++|++.+++.++.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765521 23467778888888888 88888888876552
Q ss_pred ---CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003148 568 ---GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVE 638 (844)
Q Consensus 568 ---g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~ 638 (844)
+-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+..+|...|++++|.+.++++ ...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 112222 46777888899999999999999988763211112 237788899999999999999999876 111
Q ss_pred ---CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 639 ---PN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 639 ---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+ ..+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 4577888889999999999999999999875543 347889999999999999999999988764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-11 Score=121.83 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=175.7
Q ss_pred ccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccc----cCchHHHHHHHHHHHHhCCCCchhHHhH
Q 003148 437 HISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGY----LGALDLAKWIYAYIEKNGIHCDMQLATA 512 (844)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (844)
..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444555556666677777777777766522 33445555555556 777888888887777765 5667777
Q ss_pred HhhhHHh----cCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 003148 513 LVDMFAR----CGDPQRAMQVFRRME-KRDVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTAC 583 (844)
Q Consensus 513 li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 583 (844)
+..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888888 999999999998776 3467788889999998 999999999999999865 456677777778
Q ss_pred hc----cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHhC-CCCCChHHHHHHHHHHHh-
Q 003148 584 SH----GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR----AGLLGEALDLIKSM-PVEPNDVIWGSLLAACQK- 653 (844)
Q Consensus 584 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~- 653 (844)
.. .+++++|..+|++..+ . .+...+..+..+|.+ .+++++|.+.+++. ... +...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 77 8999999999999987 2 245677888999999 99999999999987 333 36678888888888
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCC
Q 003148 654 ---HQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 654 ---~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.++.++|...++++++++|+++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999998653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=135.23 Aligned_cols=260 Identities=14% Similarity=0.030 Sum_probs=179.5
Q ss_pred ccccccccCChHHHHHHHHHHHhCCcccCh-----hhHHhHHHHccccCchHHHHHHHHHHHHh----CCCC-chhHHhH
Q 003148 443 MLGGLTQENMFEEAMELFRVMLSERIKVDR-----VTMVGVASACGYLGALDLAKWIYAYIEKN----GIHC-DMQLATA 512 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~ 512 (844)
....+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +..+ ...++..
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 344455555566666666555543 2221 23444445555566666666665544322 2111 2456667
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGN--------------------GEQAVELFNE 563 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~ 563 (844)
+...|...|++++|...|++..+ .+ ..+|..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 77888888888888888876652 22 3467788888888888 8888888887
Q ss_pred HHHC----CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 564 MLRQ----GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 564 m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
..+. +..|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6642 112222 46777888888999999999999988763222222 33778888999999999999999887
Q ss_pred C-CC---CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 635 M-PV---EPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 635 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
. .. .++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 112 4477888888999999999999999999875543 44778999999999999999999988
Q ss_pred HHhC
Q 003148 701 MKEQ 704 (844)
Q Consensus 701 m~~~ 704 (844)
..+.
T Consensus 333 al~~ 336 (406)
T 3sf4_A 333 HLEI 336 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-12 Score=131.56 Aligned_cols=258 Identities=14% Similarity=0.040 Sum_probs=181.5
Q ss_pred ccccccCChHHHHHHHHHHHhCCcccCh-----hhHHhHHHHccccCchHHHHHHHHHHHHh----CCC-CchhHHhHHh
Q 003148 445 GGLTQENMFEEAMELFRVMLSERIKVDR-----VTMVGVASACGYLGALDLAKWIYAYIEKN----GIH-CDMQLATALV 514 (844)
Q Consensus 445 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~li 514 (844)
..+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +.. ....++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3444556666666666665553 2221 33444455555666666666666554322 211 1245667788
Q ss_pred hhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGN--------------------GEQAVELFNEML 565 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 565 (844)
..|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 888889999999888877641 22 3377788888888898 899998888866
Q ss_pred HC----CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-
Q 003148 566 RQ----GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM- 635 (844)
Q Consensus 566 ~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m- 635 (844)
+. +..|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 212222 46777788889999999999999988763211122 337788899999999999999999876
Q ss_pred CC---CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 636 PV---EPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 636 ~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.. .++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11 122 4577788888999999999999999999876543 3377899999999999999999999987
Q ss_pred hC
Q 003148 703 EQ 704 (844)
Q Consensus 703 ~~ 704 (844)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 64
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-09 Score=119.64 Aligned_cols=215 Identities=9% Similarity=-0.020 Sum_probs=151.7
Q ss_pred HHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHH-HHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 003148 456 AMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAK-WIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME 534 (844)
Q Consensus 456 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 534 (844)
+..+|++.... ..-+...|.....-+...|+.+.|. .+++..+... +.+..++-..+..+.+.|+++.|.++|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555442 1113334444444445567777885 8888887653 4566777788888889999999999998776
Q ss_pred C-------------CC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHhc-cC
Q 003148 535 K-------------RD------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ-GIKPDSIVFVGVLTACSH-GG 587 (844)
Q Consensus 535 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g 587 (844)
. |+ ...|...+....+.|..+.|..+|.+.++. +. +....|......-.+ .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence 3 21 236888888888889999999999999885 21 122333332222223 35
Q ss_pred cHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC----ChHHHHHHHHHHHhcCCHHHHHH
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP----NDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
+.+.|..+|+...+.++ .+...+...++.....|+.+.|..+|++. ...| ....|..++..-.++|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999988533 33456678888888899999999999987 3333 23588888888889999999999
Q ss_pred HHHHHHhcCCCCC
Q 003148 663 AAERITELDPEKS 675 (844)
Q Consensus 663 ~~~~~~~~~p~~~ 675 (844)
+.+++.+..|+++
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999999999875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.6e-11 Score=131.73 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=158.2
Q ss_pred CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHH
Q 003148 522 DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG-EQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.+++|...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+. ..+..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666554 34678899999999999999 999999999999 67775 78899999999999999999999
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc--------CCH
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRA---------GLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH--------QNV 657 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~ 657 (844)
+++.+ +.|+...+..+..+|... |++++|++.++++ ...| +...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99988 668888889999999999 9999999999998 5556 577899999999888 999
Q ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 658 DIAAYAAERITELDP---EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=134.38 Aligned_cols=290 Identities=14% Similarity=0.006 Sum_probs=189.3
Q ss_pred chhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-C----cchHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----C
Q 003148 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-T----VVSWNSLIAGLIKNGDVESAREVFSEMPG-----R----D 436 (844)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~----~ 436 (844)
.....+..+...+.+.|++++|...|++..+ | + ...|..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556677788888888888888887653 2 2 23455666666666666666666554321 0 1
Q ss_pred ccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCC-CCchhHHhHHhh
Q 003148 437 HISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGI-HCDMQLATALVD 515 (844)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~ 515 (844)
...|..+...|...|++++|+..+++..... | +.+- .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~-----------------------------~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--R-----------------------------ELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------------------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-----------------------------hcccccchHHHHHHHHH
Confidence 2234444445555555555555555443310 0 0010 001335556666
Q ss_pred hHHhcCC--------------------HHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 516 MFARCGD--------------------PQRAMQVFRRMEK-----R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 516 ~y~k~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
.|...|+ +++|.+.|++... . ....|..+...|...|++++|+..|++.++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777777 7777777665431 1 134677788888889999999999988775
Q ss_pred CCC-CCC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-C
Q 003148 567 QGI-KPD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-P 636 (844)
Q Consensus 567 ~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 636 (844)
... .++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.++++ .
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 122 136778888889999999999999988763211111 457778899999999999999998876 1
Q ss_pred ---CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchH
Q 003148 637 ---VEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE------KSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 637 ---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 693 (844)
..++ ..+|..+...+...|++++|...+++++++.+. ...++..++.+|...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 457888888899999999999999999986432 24567788888888887643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-10 Score=117.03 Aligned_cols=215 Identities=13% Similarity=0.046 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhCCcccC-hhhHHhHHHHcc-------ccCch-------HHHHHHHHHHHHhCCCCchhHHhHHhhhHH
Q 003148 454 EEAMELFRVMLSERIKVD-RVTMVGVASACG-------YLGAL-------DLAKWIYAYIEKNGIHCDMQLATALVDMFA 518 (844)
Q Consensus 454 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (844)
++|+..|++.... .|+ ...|......+. ..|++ ++|..+++..++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5777777777663 343 334444433332 23554 677777777766322335567777777777
Q ss_pred hcCCHHHHHHHHHhcCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHH-hccCcHHHH
Q 003148 519 RCGDPQRAMQVFRRMEK--R-DVS-AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTAC-SHGGLVNQG 592 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~-~~~g~~~~a 592 (844)
+.|++++|..+|++..+ | +.. .|..++..+.+.|+.++|..+|++.++ ..|+. ..|....... ...|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888877652 2 233 677777777778888888888888777 33443 3343333332 235788888
Q ss_pred HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-P---VEP--NDVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
..+|+++.+. .|+ ...|..+++.+.+.|+.++|..+|+++ . +.| ....|..++.....+|+.+.|..+++
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888877763 233 566777777777788888888887776 2 344 24577777777777788888888888
Q ss_pred HHHhcCCCCC
Q 003148 666 RITELDPEKS 675 (844)
Q Consensus 666 ~~~~~~p~~~ 675 (844)
++++..|+++
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 8888777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=133.46 Aligned_cols=268 Identities=13% Similarity=0.023 Sum_probs=177.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CC-c----chHHHHHHHHHhcCCHHHHHHHHhhCCCC---------Ccc
Q 003148 375 DSICNTMIDMYMKCGKQEMACRIFDHMSN--KT-V----VSWNSLIAGLIKNGDVESAREVFSEMPGR---------DHI 438 (844)
Q Consensus 375 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~ 438 (844)
...+..+...|...|++++|...|++..+ |+ . ..|..+...|...|++++|.+.|++..+. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455667778888999999888887654 22 2 35666666666667766666666543220 122
Q ss_pred ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhC-CCCchhHHhHHhhhH
Q 003148 439 SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNG-IHCDMQLATALVDMF 517 (844)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y 517 (844)
.|..+...|...|++++|+..|++..... .+.+ ......++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHH
Confidence 34444444445555555555544443210 0001 111234566677777
Q ss_pred HhcCC-----------------HHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-C
Q 003148 518 ARCGD-----------------PQRAMQVFRRMEK-----R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI-K 570 (844)
Q Consensus 518 ~k~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 570 (844)
...|+ +++|.+.|++..+ . ....|..+...|...|++++|+..|++.++... .
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 77777 7777777766431 1 234677888889999999999999998876211 0
Q ss_pred CC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CC---C
Q 003148 571 PD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PV---E 638 (844)
Q Consensus 571 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~ 638 (844)
++ ..++..+...+...|++++|..++++..+...-..+ ...+..+..+|.+.|++++|.+.+++. .. .
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 136778888999999999999999988763211111 457788899999999999999999887 11 1
Q ss_pred CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 639 PN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 639 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
++ ..++..+...+...|+.++|...+++++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 12 347778888899999999999999999988763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.7e-10 Score=116.65 Aligned_cols=211 Identities=10% Similarity=0.044 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHhhhHH-------hcCCH-------HHHHHHHHhcCC----CCHhHHHHHHHHHHh
Q 003148 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFA-------RCGDP-------QRAMQVFRRMEK----RDVSAWTAAIGAMAM 550 (844)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~-------k~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 550 (844)
+.+..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887754 446777777777765 35886 899999997653 356789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHH-hcCChH
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSI--VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLG-RAGLLG 626 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~-~~g~~~ 626 (844)
.|++++|.++|+++++ +.|+.. .|..+...+.+.|++++|..+|+++.+ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999 778753 788899999999999999999999987 3444 444544443322 369999
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITEL---DPE-KSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
+|.++|+++ ...| +...|..++..+...|+.++|..+++++++. .|+ ....|..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 3334 5779999999999999999999999999995 554 566888899999999999999999999
Q ss_pred HHhCC
Q 003148 701 MKEQG 705 (844)
Q Consensus 701 m~~~~ 705 (844)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=113.71 Aligned_cols=187 Identities=11% Similarity=-0.022 Sum_probs=103.3
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---K-RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVL 580 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 580 (844)
|+..+..+...|.+.|++++|...|+... . ++...|..+...+...|++++|++.|++.++ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555566666666666666666544 2 4555555566666666666666666666665 45554 4455555
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCC-c-------chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHH
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQ-I-------VHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLL 648 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll 648 (844)
.++...|++++|...+++..+ +.|+ . ..|..+...+.+.|++++|++.++++ ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 566666666666666666655 2333 2 23555555556666666666666555 44454 23444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 649 AACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 649 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+.. .+...++++..+.+.++..|. .......|.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44432 233444555555544433332 22233445558888888887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-10 Score=109.45 Aligned_cols=159 Identities=18% Similarity=0.102 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDL 618 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 618 (844)
|..+...+...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|..+++++.+ ..| +...+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHH
Confidence 33444444455555555555555444 2232 23444455555555555555555555554 122 24455556666
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 003148 619 LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
|...|++++|.+.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666655 2222 456777777778888888888888888888888887888888888888888888888
Q ss_pred HHHHHHhC
Q 003148 697 VRLQMKEQ 704 (844)
Q Consensus 697 ~~~~m~~~ 704 (844)
.++.+.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88777653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-10 Score=112.47 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=159.7
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
|...+......+...|++++|...+..+++....++...+..+...|.+.|++++|.+.|++.. ..+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4566777777888999999999999999998764677777779999999999999999999876 3356789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChh--------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSI--------VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMV 616 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 616 (844)
|...|++++|+..|++.++ ..|+.. .|..+...+...|++++|.+.|+++.+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999999 667643 467777788899999999999999987 5665 56777888
Q ss_pred HHHHhcCCh--HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 617 DLLGRAGLL--GEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 617 ~~~~~~g~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
.+|...|+. ++|..+. ..+...+..+. ....+++++|...++++++++|+++.+...++.+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766643 3322221 12333343332 34557789999999999999999988777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-08 Score=114.38 Aligned_cols=450 Identities=9% Similarity=0.017 Sum_probs=201.1
Q ss_pred hHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC---hHHHHHH
Q 003148 84 TYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSA---FGEGVQV 160 (844)
Q Consensus 84 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~ 160 (844)
.+.+..|+..+ .-.+.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+..+
T Consensus 49 ~d~i~~lE~~l--~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMI--EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHH--HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34444444433 122357777777777777777777777777777664 23333445555555556666 7777777
Q ss_pred HHHHHHhC-CCCChhHHHHHHHHHHhcCCh--------HHHHHHHhhcC------CC-CcccHHHHHHHHHh--------
Q 003148 161 HGAIVKMG-FDRDVFVENCLINFYGECGDI--------VDGRRVFDEMS------ER-NVVSWTSLICACAR-------- 216 (844)
Q Consensus 161 ~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~-------- 216 (844)
|++.+... .+|++..|...+....+.++. +..+++|+... .+ +...|...+.-...
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77777654 135666666666555444443 22335665421 12 22345555543321
Q ss_pred -CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHH
Q 003148 217 -RDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAK---LQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDT 292 (844)
Q Consensus 217 -~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 292 (844)
+++.+.+..+|.+.+. + |... +..+-..|.. .-+...+..++... ..+++.
T Consensus 206 eq~~~~~~R~iy~raL~--i-P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLC--Q-PMDC-LESMWQRYTQWEQDVNQLTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHTT--S-CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHHH---------------------HHHHHH
T ss_pred HHhHHHHHHHHHHHHHh--C-ccHH-HHHHHHHHHHHHHhcCcchHHHHHHHh---------------------hHHHHH
Confidence 2234455566666553 1 2111 1111111110 00011111111110 012233
Q ss_pred HHHHHHhc-------CC--C--------------C------ceehHHHHHHHHHcC-------ChHHHHHHHHHHHhcCC
Q 003148 293 AKQLFGEC-------KD--R--------------N------LVLCNTIMSNYVRLG-------LAREALAILDEMLLHGP 336 (844)
Q Consensus 293 A~~~f~~m-------~~--~--------------~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~ 336 (844)
|+..+.++ .. | + +..|...+.---.++ ..+.+..+|++.+..-
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 33333321 10 0 0 012333333222222 1123344555555431
Q ss_pred CCChhhHHHHHHHHhhcCChhhHH-HHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHH
Q 003148 337 RPDRVTMLSAVSASAQLGDLLCGR-MCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAG 415 (844)
Q Consensus 337 ~p~~~t~~~ll~~~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~ 415 (844)
.-+...|.....-+...|+.+.|. .++...+.. ++.+..++-.++..+.+.|+++.|+.+|+.+...-...+..+-.
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~- 417 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME- 417 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence 123334444444445555666664 666666543 23344455556666666666666666666543200000000000
Q ss_pred HHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhC-Cc-ccChhhHHhHHHHccccCchHHHHH
Q 003148 416 LIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSE-RI-KVDRVTMVGVASACGYLGALDLAKW 493 (844)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~ 493 (844)
.....+... +.........|...+....+.|..+.|..+|.+..+. +. .+........+.-. ..++.+.|+.
T Consensus 418 --~~p~~~~~~---~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ 491 (679)
T 4e6h_A 418 --DDPTNESAI---NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACK 491 (679)
T ss_dssp --HSTTCHHHH---HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHH
T ss_pred --ccCcchhhh---hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHH
Confidence 000000000 0000001123444444444555566666666665543 11 11111111111111 1234566666
Q ss_pred HHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 494 IYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR------DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 494 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+++..++. ++.+...+...++.....|+.+.|..+|++.... ....|...+.--.++|+.+.+.++.+++.+
T Consensus 492 ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~- 569 (679)
T 4e6h_A 492 VLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE- 569 (679)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-
T ss_pred HHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 66666554 3334555556666666666666666666665532 124566666666666666666666666666
Q ss_pred CCCCCh
Q 003148 568 GIKPDS 573 (844)
Q Consensus 568 g~~p~~ 573 (844)
..|+.
T Consensus 570 -~~P~~ 574 (679)
T 4e6h_A 570 -KFPEV 574 (679)
T ss_dssp -HSTTC
T ss_pred -hCCCC
Confidence 34444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=122.23 Aligned_cols=232 Identities=12% Similarity=0.083 Sum_probs=162.0
Q ss_pred hhhHHhHHHHccccCchHHHHHHHHHHHHh-------CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C-
Q 003148 472 RVTMVGVASACGYLGALDLAKWIYAYIEKN-------GIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-------R- 536 (844)
Q Consensus 472 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~- 536 (844)
..++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777788889999999998887764 3344566778888899999999999998887652 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc---
Q 003148 537 ---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ------GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH--- 603 (844)
Q Consensus 537 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 603 (844)
....|..+...|...|++++|++.|+++++. +-.|+. ..+..+...+...|++++|.++++++.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2456788888899999999999999988874 223433 567778888889999999999999887731
Q ss_pred --CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-hHHHHH------HHHHHHhcCCHHHHHHH
Q 003148 604 --GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-P---------VEPN-DVIWGS------LLAACQKHQNVDIAAYA 663 (844)
Q Consensus 604 --~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~---------~~p~-~~~~~~------ll~~~~~~g~~~~a~~~ 663 (844)
+..|. ...+..+..+|.+.|++++|.+.++++ . ..|. ...|.. +...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11333 456778888999999999999988776 1 1121 112222 22233344556666677
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 664 AERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
++++....|..+..+..++.+|...|++++|.+.+++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788778888888999999999999999999999988765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9e-11 Score=123.88 Aligned_cols=266 Identities=14% Similarity=0.025 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCC--CC-----cchHHHHHHHHHhcCCHHHHHHHHhhCCCC---------Ccccc
Q 003148 377 ICNTMIDMYMKCGKQEMACRIFDHMSN--KT-----VVSWNSLIAGLIKNGDVESAREVFSEMPGR---------DHISW 440 (844)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~ 440 (844)
.+......+.+.|++++|...|++..+ |+ ...+..+...|...|++++|.+.+++.... ....|
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344556677888888888888887653 22 234556666666666666666666543220 12234
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCC-CchhHHhHHhhhHHh
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIH-CDMQLATALVDMFAR 519 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k 519 (844)
..+...|...|++++|+..+++..+.. .+.+-. ....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDIS-------------------------------RELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-------------------------------HHhcCchHHHHHHHHHHHHHHH
Confidence 444444555555555555554443210 000100 012345556666666
Q ss_pred cCC--------------------HHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-
Q 003148 520 CGD--------------------PQRAMQVFRRMEK-----R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI- 569 (844)
Q Consensus 520 ~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 569 (844)
.|+ +++|.+.+++... . ....|..+...|...|++++|+..+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 676 7777766665431 1 134677778888888899999888888765210
Q ss_pred CCC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CC---
Q 003148 570 KPD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PV--- 637 (844)
Q Consensus 570 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~--- 637 (844)
.++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.++++ ..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 111 136777778888899999999999887763211112 456778888999999999999998876 11
Q ss_pred CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 638 EPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 638 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
.++ ..+|..+...+...|++++|...+++++++.++
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 112 347778888899999999999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-11 Score=125.77 Aligned_cols=234 Identities=11% Similarity=0.032 Sum_probs=142.6
Q ss_pred cccccccccccCChHHHHHHHHHHHhC-------CcccChhhHHhHHHHccccCchHHHHHHHHHHHHh------C-CCC
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSE-------RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKN------G-IHC 505 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g-~~~ 505 (844)
|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. + .+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 334444444444444444444444331 11112234444555555566666666666555443 1 122
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEK-------R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ------G 568 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 568 (844)
...++..+...|...|++++|...|++..+ + ....|..+...|...|++++|++.|+++++. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456677788888888888888888877652 1 2356788888899999999999999998873 2
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc------CCCCCcc-hH------HHHHHHHHhcCChHHHHHHHHh
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH------GVSPQIV-HY------GCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~-~~------~~li~~~~~~g~~~eA~~~~~~ 634 (844)
..|+. .++..+...+...|++++|..+++++.+.. ...+... .+ ..+...+...+.+.+|...+++
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 24443 467788889999999999999999987621 1222222 22 2223334455566666667766
Q ss_pred C-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 635 M-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 635 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
. ...| +..+|..+...+...|++++|...+++++++.|+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6 2334 3558889999999999999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-09 Score=104.05 Aligned_cols=167 Identities=16% Similarity=0.058 Sum_probs=142.8
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTA 582 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 582 (844)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+ ..|+ ...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 34566678889999999999999998873 4677899999999999999999999999998 4565 4678888889
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 660 (844)
+...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999883 2234677888999999999999999999987 3334 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCch
Q 003148 661 AYAAERITELDPEKSGV 677 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~ 677 (844)
...+++++++.|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999999987643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=123.72 Aligned_cols=220 Identities=8% Similarity=0.005 Sum_probs=143.7
Q ss_pred cccCchHHHHHHHHHHHHh----CCCC-chhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----HhHHHHHHHH
Q 003148 483 GYLGALDLAKWIYAYIEKN----GIHC-DMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD-----VSAWTAAIGA 547 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 547 (844)
...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+...
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 3445555555555554432 1111 234566677777777887777777766541 11 2467777788
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCC-cchHHHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIK-PDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~ 618 (844)
|...|++++|++.|++.++.... ++. .++..+...|...|++++|..++++..+.. +..|. ...+..+...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 88888888888888887652111 111 367777788888888888888888876621 22133 5567778888
Q ss_pred HHhcCChHHHHHHHHhC-CC-----CCC-hHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 619 LGRAGLLGEALDLIKSM-PV-----EPN-DVIWGSLLAACQKHQN---VDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|...+++. ...|.....+..|+.+|...
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 121 2234556666777777 66666666665 33334445777889999999
Q ss_pred CCchHHHHHHHHHHh
Q 003148 689 GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 g~~~~a~~~~~~m~~ 703 (844)
|++++|.+.+++..+
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=131.60 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=146.2
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+...++.|...|.+.|++++|++.|++.. ..+...|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56788899999999999999999999876 44678999999999999999999999999999 78886 68999999
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 658 (844)
++...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.|+++ .+.|+ ...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988 6676 778999999999999999999999998 66775 668999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 003148 659 IAAYAAERITELDPE 673 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~ 673 (844)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999886553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=115.57 Aligned_cols=165 Identities=9% Similarity=0.058 Sum_probs=126.2
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCh-
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ----GIKPDS- 573 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~- 573 (844)
.+++.+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++.++. +..|+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3556677778888888888888776551 12 246788888999999999999999988762 332444
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCh-HHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMVDLLGRAGL---LGEALDLIKSMPVEPND-VIWGS 646 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~m~~~p~~-~~~~~ 646 (844)
.++..+...+...|++++|..++++..+...-..+ ...+..+..+|...|+ +++|+.++++.+..|+. ..+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 67888888999999999999999988763211112 3346678888999999 99999999999655543 36777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+...+...|++++|...+++++++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88889999999999999999987544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-08 Score=109.84 Aligned_cols=258 Identities=12% Similarity=0.029 Sum_probs=173.7
Q ss_pred ccccCChHHHHHHHHHHHhCCcccChh----hHHhHHHHccccCchHHHHHHHHHHHHhCC---CC--chhHHhHHhhhH
Q 003148 447 LTQENMFEEAMELFRVMLSERIKVDRV----TMVGVASACGYLGALDLAKWIYAYIEKNGI---HC--DMQLATALVDMF 517 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~---~~--~~~~~~~li~~y 517 (844)
+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+... .+ .......+...|
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 445566666666666665532111111 233334445566777777777666543211 11 123355677788
Q ss_pred HhcCCHHHHHHHHHhcCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-C-hhHHHHHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEK----------R-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIK--P-D-SIVFVGVLTA 582 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~-~~t~~~ll~a 582 (844)
...|++++|...+++... + ....+..+...+...|++++|...+++.++.... | . ..++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 889999999988877641 1 1235666778889999999999999998873221 1 1 2457777788
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----hHHHHHHHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG-----CMVDLLGRAGLLGEALDLIKSM-PVEPN-----DVIWGSLLAAC 651 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~ 651 (844)
+...|++++|..++++..+...-......+. .++..+...|++++|...+++. ...|. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 8899999999999999876322111111222 2345577999999999999988 32222 22566777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKS------GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|+.++|...++++++..+... ..+..++.+|...|++++|.+.++...+.
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 899999999999999987644321 36778899999999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-09 Score=112.22 Aligned_cols=194 Identities=9% Similarity=0.033 Sum_probs=110.5
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-h
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEK-----RD-----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ----GIKPD-S 573 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 573 (844)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++.++. |-.+. .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445555566666666666655554431 11 235566666677777777777777666542 11111 1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-hHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----PV--EPN-DVI 643 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~~--~p~-~~~ 643 (844)
.++..+...|...|++++|.+++++..+.. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666667777777777777777665411 11222555666777777777777777777665 11 122 223
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 644 WGSLLAACQKHQN---VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 644 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+..+...+...|+ +++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555566 55555555541 12223334566778888888888888877777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=106.51 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=94.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCh
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 625 (844)
+...|+.++|++.+++... ..|+. ..+..+...|...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 3445556666666665544 34433 3455566666666666666666666665 4444 55666677777777777
Q ss_pred HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 626 GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAY-AAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
++|+..|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777766 4556 45678888888888888876655 4689999999999999888888887775
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=110.91 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=154.8
Q ss_pred ccCchHHHHHHHHHHHHh-------CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHH
Q 003148 484 YLGALDLAKWIYAYIEKN-------GIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-------R----DVSAWTAAI 545 (844)
Q Consensus 484 ~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li 545 (844)
..|+++.|...+....+. ..+....++..+...|...|++++|...|++..+ + ...+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456677777776665442 2233567788899999999999999999987651 1 245788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc-----CCCCC-cchH
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQ------GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH-----GVSPQ-IVHY 612 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~ 612 (844)
..|...|++++|++.|++.++. .-.|+. .++..+...+...|++++|..+++++.+.. +..|. ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998873 112433 578888889999999999999999988731 11333 5678
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-hHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCC
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-P---------VEPN-DVIWGSLLAACQKHQNV------DIAAYAAERITELDPEKS 675 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~---------~~p~-~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~~ 675 (844)
..+..+|.+.|++++|.++++++ . ..|. ...|..+.......+.. ..+...++......|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999999876 1 1232 33454444444433332 222223332223345555
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..+..++.+|...|++++|.+++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-09 Score=105.09 Aligned_cols=202 Identities=13% Similarity=0.065 Sum_probs=129.3
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEK--R-D---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS----IV 575 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 575 (844)
+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+...|.+.|++++|+..|++.++ ..|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 344445555666667777777777766652 2 2 44566666667777777777777777766 33421 23
Q ss_pred HHHHHHHHhc--------cCcHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHH
Q 003148 576 FVGVLTACSH--------GGLVNQGWHLFRSMTDIHGVSPQI-VHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGS 646 (844)
Q Consensus 576 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 646 (844)
+..+..++.. .|++++|...|+++.+. .|+. .....+..+....+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4455555555 66677777777666662 2332 1221111111000000 112456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCccc
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASA----------GKWTNVARVRLQMKEQGIRKLPGSS 713 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s 713 (844)
+...+...|++++|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+.. |.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p~-- 227 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----PD-- 227 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----TT--
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----CC--
Confidence 67788999999999999999999999854 4788999999877 99999999999988743 22
Q ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 003148 714 SIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRD 750 (844)
Q Consensus 714 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 750 (844)
+|...+....+.++...+.+
T Consensus 228 -----------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 -----------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------CTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------ChHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=124.79 Aligned_cols=167 Identities=11% Similarity=0.005 Sum_probs=102.1
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 003148 518 ARCGDPQRAMQVFRRME-----------KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSH 585 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 585 (844)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|+++++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 44566666666665543 23445566666666666666666666666666 45544 455566666666
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
.|++++|...|+++.+ +.|+ ...|..+..+|.+.|++++ ++.++++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665 3444 4556666666666666666 6666665 3344 34466666666666677777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 663 AAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 663 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777666666666666655444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=112.18 Aligned_cols=198 Identities=10% Similarity=0.019 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHH
Q 003148 487 ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGNGEQA 557 (844)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 557 (844)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 3467788999999998887652 12 45789999999999999999
Q ss_pred HHHHHHHHHCCCCCC-------hhHHHHHHHHHhcc-CcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCh
Q 003148 558 VELFNEMLRQGIKPD-------SIVFVGVLTACSHG-GLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~ 625 (844)
+..|++.++ +.|+ ..++..+..+|... |++++|+.+|++..+...-..+ ...+..+...|.+.|++
T Consensus 97 ~~~~~~Al~--l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQ--IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999886 3221 24688888899996 9999999999999873211111 34678899999999999
Q ss_pred HHHHHHHHhC-CCCCChH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--HcC
Q 003148 626 GEALDLIKSM-PVEPNDV--------IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV-----HVLLSNIYA--SAG 689 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~~--------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g 689 (844)
++|++.+++. ...|+.. .|..+...+...|++++|+..++++++++|+.... +..++..|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999987 3333211 46777778889999999999999999999986543 344556664 456
Q ss_pred CchHHHHHHHHH
Q 003148 690 KWTNVARVRLQM 701 (844)
Q Consensus 690 ~~~~a~~~~~~m 701 (844)
++++|.+.++.+
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 788888877443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.6e-09 Score=107.07 Aligned_cols=193 Identities=11% Similarity=0.003 Sum_probs=136.4
Q ss_pred ccccCchHHHHHHHHHHHHh----CCCC-chhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHH
Q 003148 482 CGYLGALDLAKWIYAYIEKN----GIHC-DMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGA 547 (844)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 547 (844)
+...|++++|...+....+. |-.+ ...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456666666666554432 2211 145677788888888888888888876652 12 3478888899
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCCC-------hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc--------h
Q 003148 548 MAME-GNGEQAVELFNEMLRQGIKPD-------SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV--------H 611 (844)
Q Consensus 548 ~~~~-g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--------~ 611 (844)
|... |++++|+..|++.++ +.|+ ..++..+...+...|++++|+.+|++..+ +.|+.. .
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK---SSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTSSCTTTGGGHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HHhcCCcccHHHHHH
Confidence 9996 999999999999887 3332 24678888899999999999999999988 334321 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCChH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV------IWGSLLAACQ--KHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
|..++.+|...|++++|...+++. .+.|+.. .+..++.++. ..+++++|...++++.+++|.+...+.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 677888899999999999999988 5566432 3445556664 356788999999888888886643333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.1e-09 Score=106.09 Aligned_cols=176 Identities=9% Similarity=-0.010 Sum_probs=144.9
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 522 DPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
..+.....+......+...+..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|...++++.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 345556666666666667788888889999999999999999999 77876 678888889999999999999999987
Q ss_pred hhcCCCCCcchHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C
Q 003148 601 DIHGVSPQIVHYGC-MVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK--S 675 (844)
Q Consensus 601 ~~~~~~p~~~~~~~-li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 675 (844)
+ ..|+...... ..-.+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ +
T Consensus 179 ~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 L---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 6 4565433322 233467788888899988887 4456 56789999999999999999999999999999988 7
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
..+..|+.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999999998887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-07 Score=96.63 Aligned_cols=175 Identities=10% Similarity=-0.004 Sum_probs=134.6
Q ss_pred HHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 526 AMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 526 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 677777665 345666677888899999999999999998875543454 5677788899999999999999999987
Q ss_pred hcCCCC-----CcchHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 003148 602 IHGVSP-----QIVHYGCMVDL--LGRAG--LLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITEL- 670 (844)
Q Consensus 602 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 670 (844)
..| +..+...|..+ ....| +..+|..+|+++ ...|+...-..+++++.+.|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 556 23444444444 33334 899999999998 44466333344555788899999999999988876
Q ss_pred ---------CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 671 ---------DPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 671 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+|+++.++..++.+....|+ +|.+++.++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58888888888888888897 8999999998753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-09 Score=97.84 Aligned_cols=122 Identities=14% Similarity=0.031 Sum_probs=103.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
|...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556778899999999998866 4555 556778999999999999999999998 6666 5679999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH-HHHHHh
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARV-RLQMKE 703 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 703 (844)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 466655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-08 Score=97.51 Aligned_cols=178 Identities=12% Similarity=0.031 Sum_probs=114.8
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHH
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEK--RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VFVG 578 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ 578 (844)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++ ..|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHHH
Confidence 344455667777888888888877652 22 24566677777888888888888888777 455542 3333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003148 579 VLTACSH------------------GGLVNQGWHLFRSMTDIHGVSPQI-VHYGCMVDLLGRAGLLGEALDLIKSMPVEP 639 (844)
Q Consensus 579 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 639 (844)
+..++.. .|+.++|...|+++.+ ..|+. ..+..+. +.+.+.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~----~l~~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATK----RLVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHH----HHHHHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHH----HHHHHHHHH----------
Confidence 4444432 3556666666666555 22332 1111111 000000000
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455667889999999999999999999876 5688999999999999999999999887653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-08 Score=102.51 Aligned_cols=201 Identities=14% Similarity=0.046 Sum_probs=142.5
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-C---HhHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGDPQRAMQVFRRMEK--R-D---VSAWT 542 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---~~~~~ 542 (844)
+...+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++..+ | + ...|.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34455566667788999999999999998865322 156777888999999999999999998862 2 1 34677
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHH
Q 003148 543 AAIGAMAM--------EGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG 613 (844)
Q Consensus 543 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 613 (844)
.+..++.. .|++++|+..|++.++ ..|+.. ....+ ..+...... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 78888888 9999999999999999 567653 22111 111111110 011245
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc--
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKH----------QNVDIAAYAAERITELDPEKSG-- 676 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 676 (844)
.+...|.+.|++++|+..|+++ ...|+ ...|..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888899999999988877 33343 33666677777655 8999999999999999999864
Q ss_pred -hHHHHHHHHHHcCCch
Q 003148 677 -VHVLLSNIYASAGKWT 692 (844)
Q Consensus 677 -~~~~l~~~~~~~g~~~ 692 (844)
....+..++...|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3345555555544444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-08 Score=100.85 Aligned_cols=222 Identities=11% Similarity=0.013 Sum_probs=150.0
Q ss_pred cCChHHHHHHHHHHHh-------CCcccChhhHHhHHHHccccCchHHHHHHHHHHHHh------CC-CCchhHHhHHhh
Q 003148 450 ENMFEEAMELFRVMLS-------ERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKN------GI-HCDMQLATALVD 515 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~-~~~~~~~~~li~ 515 (844)
.|++++|+.+|++..+ ........++..+...+...|++++|...+..+.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3444555555444433 222223456667777788888999998888877654 22 234567888999
Q ss_pred hHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCh-hHHH
Q 003148 516 MFARCGDPQRAMQVFRRMEK-------R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ------GIKPDS-IVFV 577 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~ 577 (844)
.|...|++++|...|++..+ + ....|..+...|...|++++|+..|+++++. +-.|+. .++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999987652 1 2457888999999999999999999998874 114443 5788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhc------CCCCC-cchHHHHHHHHHhcC------ChHHHHHHHHhCC-CCCC-hH
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIH------GVSPQ-IVHYGCMVDLLGRAG------LLGEALDLIKSMP-VEPN-DV 642 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~~g------~~~eA~~~~~~m~-~~p~-~~ 642 (844)
.+...+...|++++|..+++++.+.. ...+. ...|..+...+...+ .+.++...++... ..|+ ..
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 88889999999999999999987631 12333 334444444444333 3445555555553 2333 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
+|..+...+...|++++|...+++++++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 78888899999999999999999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.4e-09 Score=97.65 Aligned_cols=156 Identities=11% Similarity=0.039 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH-HH
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL-LG 620 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~ 620 (844)
.+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|...++++.+ ..|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 334445555555555555555554 34443 3455555555556666666666655544 22322211111111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHcCCchHHHH
Q 003148 621 RAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK--SGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
+.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222333456666665 4456 46788888899999999999999999999999875 5588999999999999999999
Q ss_pred HHHHHHh
Q 003148 697 VRLQMKE 703 (844)
Q Consensus 697 ~~~~m~~ 703 (844)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=91.86 Aligned_cols=171 Identities=10% Similarity=-0.052 Sum_probs=134.7
Q ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 003148 526 AMQVFRRME-KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG----LVNQGWHLFRSMT 600 (844)
Q Consensus 526 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 600 (844)
|.+.|++.. ..+..++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555444 3467777888888888888888988888888754 45666677777777 6 8899999998887
Q ss_pred hhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---hHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 003148 601 DIHGVSPQIVHYGCMVDLLGR----AGLLGEALDLIKSM-PVEPN---DVIWGSLLAACQK----HQNVDIAAYAAERIT 668 (844)
Q Consensus 601 ~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 668 (844)
+ . -+...+..|..+|.. .+++++|.+++++. ...|. ...+..|...|.. .++.++|...++++.
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2 245667778888876 78999999999987 44443 6788888888877 789999999999999
Q ss_pred hcCCCCCchHHHHHHHHHHc-C-----CchHHHHHHHHHHhCC
Q 003148 669 ELDPEKSGVHVLLSNIYASA-G-----KWTNVARVRLQMKEQG 705 (844)
Q Consensus 669 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 705 (844)
+. |.++..+..|+.+|... | ++++|.+++++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98 77778899999999765 3 8999999999988876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-07 Score=98.42 Aligned_cols=224 Identities=12% Similarity=0.023 Sum_probs=165.9
Q ss_pred HccccCchHHHHHHHHHHHHhCCCCch----hHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CCH----hHHHHHHHH
Q 003148 481 ACGYLGALDLAKWIYAYIEKNGIHCDM----QLATALVDMFARCGDPQRAMQVFRRMEK-----RDV----SAWTAAIGA 547 (844)
Q Consensus 481 a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~ 547 (844)
.+...|+++.+...+..........+. ..++.+...|...|++++|...+++... .+. .+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345678999999999988776533332 2566777889999999999999987652 222 235667888
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCC--CCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC-CC--CcchHHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQ----GIK--PDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGV-SP--QIVHYGCMVD 617 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~----g~~--p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p--~~~~~~~li~ 617 (844)
+...|++++|+..+++.++. +.. |.. ..+..+...+...|++++|..++++..+...- .+ ....|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999988763 222 333 45666778889999999999999998763211 11 1345778889
Q ss_pred HHHhcCChHHHHHHHHhC----CCCCChHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHH
Q 003148 618 LLGRAGLLGEALDLIKSM----PVEPNDVIWGS-----LLAACQKHQNVDIAAYAAERITELDPEKSG----VHVLLSNI 684 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m----~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 684 (844)
.+...|++++|...+++. +...+...|.. .+..+...|+.++|...++++++..|.++. .+..++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999999876 11112223333 223467899999999999999987775422 45788999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 003148 685 YASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 685 ~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|++++|.+.++...+.
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.5e-08 Score=87.16 Aligned_cols=128 Identities=20% Similarity=0.309 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
.|..+...+...|++++|+.+|+++.+. .|+ ...+..+...+...|++++|..+++++.+. .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR---------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC----------
Confidence 3555666666666666666666666652 332 244444555555555555555555555441 111
Q ss_pred HHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 619 LGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 68 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 23344455555555555566666666655555555555555666666666666666665
Q ss_pred HHHHh
Q 003148 699 LQMKE 703 (844)
Q Consensus 699 ~~m~~ 703 (844)
+.+.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-08 Score=87.80 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.|..++..|.+.|++++|.++++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667788888889999999988887 3333 5678888888899999999999999999999999998999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 003148 689 GKWTNVARVRLQMKEQG 705 (844)
Q Consensus 689 g~~~~a~~~~~~m~~~~ 705 (844)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-08 Score=96.73 Aligned_cols=153 Identities=10% Similarity=0.046 Sum_probs=109.0
Q ss_pred hHHhcCCHHHHHHHHHhcCCC---CHhHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hH
Q 003148 516 MFARCGDPQRAMQVFRRMEKR---DVSAWTA----------------AIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IV 575 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 575 (844)
.+.+.|++++|...|++.... +...|.. +...|.+.|++++|+..|++.++ +.|+. ..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 345566666666666655422 2334444 78888889999999999999888 67765 67
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC--hHHHHHHHHhCCCCCCh--HHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGL--LGEALDLIKSMPVEPND--VIWGSLLAA 650 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~--~~eA~~~~~~m~~~p~~--~~~~~ll~~ 650 (844)
+..+..++...|++++|...|+++.+ +.|+ ...|..+...|...|+ .+++...+++.. .|+. ..|..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 78888888899999999999999887 5565 6678888888766654 445666666652 3333 344555556
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 651 CQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
+...|++++|+..+++++++.|++
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCH
Confidence 677888999999999999999964
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.7e-08 Score=111.53 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=149.9
Q ss_pred cccCchHHHHHHHHHHH--------HhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc
Q 003148 483 GYLGALDLAKWIYAYIE--------KNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAME 551 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 551 (844)
...|++++|.+.+..+. +. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677788877777776 22 24456778888899999999999999999877 45778999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHH
Q 003148 552 GNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 552 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~ 629 (844)
|++++|++.|++.++ +.|+. ..+..+..++...|++++ .+.|+++.+ +.|+ ...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999 77876 678889999999999999 999999988 5565 678899999999999999999
Q ss_pred HHHHhC-CCCCC-hHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCchHH
Q 003148 630 DLIKSM-PVEPN-DVIWGSLLAACQKHQN-----VDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 630 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
+.++++ ...|+ ...|..+..++...|+ .+...++.+.+.++.++++....
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 999998 67786 4577777777766555 34444555555556666555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.79 E-value=7e-08 Score=103.96 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=176.8
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCc-ccC----hhhHHhHHHHccccCchHHHHHHHHHHHHhCC-----C-CchhH
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERI-KVD----RVTMVGVASACGYLGALDLAKWIYAYIEKNGI-----H-CDMQL 509 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~-~~~~~ 509 (844)
......+...|++++|+..|++...... .+| ..++..+...+...|+.+.|...+..+.+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445556789999999999999876421 123 24566677788899999999999988765311 1 12456
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-hhHH
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQG---IKPD-SIVF 576 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~-~~t~ 576 (844)
++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++.++.. ..|+ ..++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 77889999999999999999987652 22 3468889999999999999999999988710 1233 4678
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCh-HHHHHHHH
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMVDLLGRAGL---LGEALDLIKSMPVEPND-VIWGSLLA 649 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~m~~~p~~-~~~~~ll~ 649 (844)
..+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|+.++++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88888999999999999999999874332222 3356667777888888 99999999997655543 36667888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 003148 650 ACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.+...|++++|...++++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999988643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-08 Score=96.09 Aligned_cols=159 Identities=9% Similarity=0.063 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHH----------------HHHHHhccCcHHHHHHHHHHhHhh
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVG----------------VLTACSHGGLVNQGWHLFRSMTDI 602 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~ 602 (844)
.+-.....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ- 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 344455677889999999999999999 67876 45666 78889999999999999999988
Q ss_pred cCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCch
Q 003148 603 HGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN--VDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 603 ~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~ 677 (844)
+.|+ ...+..+..+|...|++++|++.|++. ...| +..+|..+...+...|+ .+.+...++++....|.. ..
T Consensus 83 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a 159 (208)
T 3urz_A 83 --KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YA 159 (208)
T ss_dssp --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HH
T ss_pred --HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HH
Confidence 5565 778899999999999999999999998 5566 46688888888766553 445556666665443322 24
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 678 HVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 678 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+..++..+...|++++|...+++..+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 566788888999999999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-08 Score=88.36 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.|+ ...+...+..|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 344555666666667777776666665 3344 455666666677777777777777777777777777777777
Q ss_pred HHHHHHcCCchHHHHHHHHHHh
Q 003148 682 SNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777766655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-08 Score=113.93 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=126.3
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++.++ ..|+. ..+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999877 34578899999999999999999999999999 67775 6788888999999999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH---QNVDIAAYAAERITE 669 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 669 (844)
+++..+ ..|+ ...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988 4455 678889999999999999999999987 4455 467888899999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 003148 670 LDPEKSGVHVLLS 682 (844)
Q Consensus 670 ~~p~~~~~~~~l~ 682 (844)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=91.97 Aligned_cols=101 Identities=10% Similarity=-0.098 Sum_probs=89.6
Q ss_pred CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 604 GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 604 ~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
.+.|+ ...+..+...|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35565 556777888889999999999999888 5556 57799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=92.59 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=87.4
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4454 556677888889999999999999887 4455 677899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 003148 682 SNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.+|...|++++|.+.+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.4e-08 Score=111.19 Aligned_cols=144 Identities=10% Similarity=-0.008 Sum_probs=79.0
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFN 562 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 562 (844)
|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666555442 2245556666666666677777766666554 2345566666666666677777777776
Q ss_pred HHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc---CChHHHHHHHHhC
Q 003148 563 EMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA---GLLGEALDLIKSM 635 (844)
Q Consensus 563 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---g~~~eA~~~~~~m 635 (844)
+.++ ..|+. ..+..+..++...|++++|.+.+++..+ ..|+ ...+..+..+|... |+.++|.+.+++.
T Consensus 82 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6666 44544 4566666666666777777776666665 2333 44556666666666 6666666666665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=8e-08 Score=100.14 Aligned_cols=219 Identities=15% Similarity=0.062 Sum_probs=148.9
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466777777777665421 110 0 11135666666665543 3456677888888777
Q ss_pred HHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--hhHHHHHHHHHhccCcHHHHHHH
Q 003148 530 FRRMEK-----RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI---KPD--SIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 530 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
|.+..+ .+ ...|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776541 11 34678888889999999999999998775211 122 2467788888888 999999999
Q ss_pred HHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----hHHHHHHHHHHHhcCCHHHHHHH
Q 003148 596 FRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PV---EPN----DVIWGSLLAACQKHQNVDIAAYA 663 (844)
Q Consensus 596 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 663 (844)
|++..+.+.-..+ ...+..+..+|.+.|++++|++.+++. .+ .++ ...|..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998773211111 457788899999999999999999887 21 112 22566666677778999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHHcCCchHHHH
Q 003148 664 AERITELDPEKSGV-----HVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 664 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 696 (844)
+++++ ++|+.... ...++..| ..|+.+++.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33455545 5677666555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=87.51 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=88.5
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+......+.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45554 4566667777777778888877777776 3444 667777788888888888888888776 4455 46689
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
..+..++...|++++|+..++++++++|+++.++..|+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999998888777664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.4e-07 Score=92.54 Aligned_cols=165 Identities=5% Similarity=-0.048 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----c
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----I 609 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 609 (844)
..+...+..+...|++++|++.+++.++.....+. ..+..+...+...|++++|...+++..+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788889999999999888874222111 12334555677888999999999888762211112 3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE--K---- 674 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~---- 674 (844)
..|+.+...|...|++++|.++++++ ...|+ ..++..+...|...|++++|...+++++++.++ +
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999998876 11222 257888899999999999999999999986542 1
Q ss_pred CchHHHHHHHHHHcCCchHH-HHHHHHHHh
Q 003148 675 SGVHVLLSNIYASAGKWTNV-ARVRLQMKE 703 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 703 (844)
...|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45788999999999999999 777777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-08 Score=101.13 Aligned_cols=196 Identities=12% Similarity=0.000 Sum_probs=150.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003148 485 LGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEM 564 (844)
Q Consensus 485 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 564 (844)
.|++++|.+++....+.... . .|...+++++|...|... ...|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 57788899988887764321 1 122258899999988754 56788999999999999988
Q ss_pred HHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC--CC--cchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 565 LRQ----GIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVS--PQ--IVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 565 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~--~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
.+. |-.+. ..+|..+...|...|++++|+..|++..+.+.-. +. ..++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 762 11111 2478888889999999999999999987732111 11 4577888999988 9999999999887
Q ss_pred -CCCC---C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 636 -PVEP---N----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG------VHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 636 -~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
.+.| + ..++..+...+...|++++|+..+++++++.|++.. .+..++.+|...|++++|.+.+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211 1 357888889999999999999999999998776542 5677888899999999999999988
Q ss_pred H
Q 003148 702 K 702 (844)
Q Consensus 702 ~ 702 (844)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-07 Score=89.16 Aligned_cols=182 Identities=12% Similarity=-0.008 Sum_probs=131.4
Q ss_pred hHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcC--CCC-H---hHHHHHH
Q 003148 474 TMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGDPQRAMQVFRRME--KRD-V---SAWTAAI 545 (844)
Q Consensus 474 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~---~~~~~li 545 (844)
.+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++.. .|+ . ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34445566788899999999999998865332 23567778899999999999999999876 232 2 2455555
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHhHhhcCCC
Q 003148 546 GAMAM------------------EGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHLFRSMTDIHGVS 606 (844)
Q Consensus 546 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 606 (844)
.++.. .|+.++|+..|+++++ ..|+... ...... ...+...+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~----- 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK----- 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH-----
Confidence 55554 5789999999999998 6787642 221111 0011111111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 607 PQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
..-.+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|+..++++....|++..
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678899999999999999987 444542 46888888999999999999999999999998754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=9.3e-08 Score=86.69 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=86.2
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4443 445666778888899999999999887 4455 677899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 003148 682 SNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=89.16 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=118.7
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH-H-Hh
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT-A-CS 584 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a-~~ 584 (844)
...+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+ ..|+.. +..+.. . +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 3455667888999999999999887 34677899999999999999999999999877 455333 322222 1 11
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHHHHHHhcCCHHH
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~ 659 (844)
..+...+|...+++..+ ..|+ ...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223357888888877 5565 678888999999999999999999987 55664 5588899999999999999
Q ss_pred HHHHHHHHHh
Q 003148 660 AAYAAERITE 669 (844)
Q Consensus 660 a~~~~~~~~~ 669 (844)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-06 Score=89.35 Aligned_cols=209 Identities=13% Similarity=0.134 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC--CHHHHHHHHHhcC---CCCHhHHHHHHHHH----Hhc---CChHH
Q 003148 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFARCG--DPQRAMQVFRRME---KRDVSAWTAAIGAM----AME---GNGEQ 556 (844)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~ 556 (844)
++|..+...++..+. .+..+++.--..+...| +++++++.++.+. .++...|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 345555555555442 23444555555555556 7888888877766 34556676654444 444 67888
Q ss_pred HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHH--HHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC------hH
Q 003148 557 AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVN--QGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGL------LG 626 (844)
Q Consensus 557 A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~------~~ 626 (844)
++++++++++ ..|.. ..|..-.....+.|.++ +++++++++.+ ..|. ...|+....++.+.|+ ++
T Consensus 129 EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 129 EFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8888888887 55644 56666666666677776 88888888877 3343 4556666666666665 78
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQN-VDIAAYAAERITELD---PEKSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
+++++++++ ...| |...|+-+...+.+.|+ .+.....++++++++ |.++.++..|+++|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 888888776 4444 67788888777777775 344556777777765 67777788888888888888888888888
Q ss_pred HHh
Q 003148 701 MKE 703 (844)
Q Consensus 701 m~~ 703 (844)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-06 Score=88.73 Aligned_cols=160 Identities=7% Similarity=-0.015 Sum_probs=120.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCChh----HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHH
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQG-IKPDSI----VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGC 614 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 614 (844)
.+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|..+|+++.+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788899999999999988732 112211 2334666777888999999999998872222223 225888
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-----C---CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSMP-----V---EPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHV 679 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 679 (844)
+...|...|++++|+++++++- . .|. ..+|..+...|...|++++|...+++++++.++. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999888761 1 112 2378888999999999999999999999865533 45788
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHh
Q 003148 680 LLSNIYASAGK-WTNVARVRLQMKE 703 (844)
Q Consensus 680 ~l~~~~~~~g~-~~~a~~~~~~m~~ 703 (844)
.++.+|...|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-08 Score=99.63 Aligned_cols=191 Identities=10% Similarity=-0.020 Sum_probs=138.9
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556677888899999999999998775 44778899999999999999999999999998 67766 67888888
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 660 (844)
++...|++++|...|++..+ +.|+ ...+...+....+..+..+... .......++..+...+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 99999999999999999877 3332 1122222333322222222222 2222333444444444 3333 6899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHhC
Q 003148 661 AYAAERITELDPEKSGVHVLLSNIYASA-GKWTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 704 (844)
.+.++++++++|++......+..++.+. +++++|.+++.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777777777776 7899999999888663
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-08 Score=107.25 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHH
Q 003148 520 CGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++.+.-
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~ 192 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQ 192 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHH
Confidence 3445555555554431 2345677777777777888888888877777 44443110 001111110
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.. ....|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|++
T Consensus 193 ~~---------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 193 AL---------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 00 1346777888888888888888888887 4455 56788999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCchHH-HHHHHHHH
Q 003148 675 SGVHVLLSNIYASAGKWTNV-ARVRLQMK 702 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 702 (844)
+.++..++.++...|++++| .+.++.|.
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 45666664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-07 Score=94.35 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=84.0
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH-HHHHHHH
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF-VGVLTAC 583 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~ 583 (844)
.....+...+.+.|++++|...|++.. ..+...+..+...+.+.|++++|+..++++.. ..|+.... ......+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHHH
Confidence 333444455555566666666665543 22445555555566666666666666665554 34443221 1112224
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHHHHHHhcCCHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~ 658 (844)
...+..++|...+++..+ ..|+ ...+..+..+|...|++++|++.++++ ...|+ ...|..++..+...|+.+
T Consensus 196 ~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 444555555555555554 3343 445555666666666666666666655 33332 445666666666666666
Q ss_pred HHHHHHHHHH
Q 003148 659 IAAYAAERIT 668 (844)
Q Consensus 659 ~a~~~~~~~~ 668 (844)
+|...+++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=85.36 Aligned_cols=144 Identities=8% Similarity=-0.069 Sum_probs=104.7
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+..+...|.+.|++++|...|++..+++...|..+...|...|++++|++.|++.++ ..|+. ..+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 344566777888888888888888877888888888888888888888888888887 45554 567777778888888
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPN-DVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+++|.+.|+++.+ ..|+..... +...| +...|+ ..+|..+..++...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~---~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALI---QLRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHH---TTTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888776 233311000 00000 023333 357788888888999999999999999
Q ss_pred HhcCCCC
Q 003148 668 TELDPEK 674 (844)
Q Consensus 668 ~~~~p~~ 674 (844)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999976
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.6e-07 Score=87.27 Aligned_cols=125 Identities=9% Similarity=-0.036 Sum_probs=98.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|++.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666777777777776553 355667777777777778888887777776 3334 56688888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 654 HQNVDIAAYAAERITELDPEKS----------------GVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.|++++|+..+++++++.|++. ..+..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 889999999999999999999999988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-05 Score=89.49 Aligned_cols=372 Identities=12% Similarity=0.021 Sum_probs=180.6
Q ss_pred hcC-CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCC-hHHHHH
Q 003148 251 KLQ-NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGL-AREALA 326 (844)
Q Consensus 251 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~ 326 (844)
+.| +++.|+.+++.++..- |. |+++.+..+|++... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 4778888888776542 22 889999999988765 677788888877766663 345666
Q ss_pred HHHHHHhc-CCCC-ChhhHHHHHHHHh----hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhh
Q 003148 327 ILDEMLLH-GPRP-DRVTMLSAVSASA----QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDH 400 (844)
Q Consensus 327 l~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 400 (844)
+|+..+.. |..| +...|...+..+. ..++.+.++.++..+++.....-..+|......-... ....+.++..+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~-~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELEL-NKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHh-ccccHHHHHHH
Confidence 77766653 4444 3344544444432 2356677777887777643322233333332221111 12222222221
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccccccccccccc-------CChHHHHHHHHHHHhCCcc
Q 003148 401 MSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPG----RDHISWNTMLGGLTQE-------NMFEEAMELFRVMLSERIK 469 (844)
Q Consensus 401 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~-------g~~~~A~~l~~~m~~~g~~ 469 (844)
.. +.+..|..+++.+.. .+...|...+.--..+ +..+.+..+|+++.... +
T Consensus 149 ~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 TL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred Hh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 10 011111111111110 1112232222211111 01234455666665532 1
Q ss_pred cChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHH-HHHHHhcC------------CC
Q 003148 470 VDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRA-MQVFRRME------------KR 536 (844)
Q Consensus 470 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A-~~~~~~~~------------~~ 536 (844)
-+...+...+.-+...|+++.|+.+++..++. +.+...+.. |+...+.++. ..+.+... ..
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccc
Confidence 22334444444445566777777777777666 333333221 2221111111 11111100 00
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh-ccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACS-HGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
....|...+....+++..+.|..+|++. +. ..++...|......-. ..++.+.|..+|+...+.++-. ...+...
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~y 360 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHH
Confidence 1244666666666666777777777777 21 1112223322111111 1225777777777777643222 3345556
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 361 id~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666677777777777777762 2355666666666666776666666665553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.55 E-value=7.8e-07 Score=90.17 Aligned_cols=167 Identities=10% Similarity=0.082 Sum_probs=123.7
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----Chh
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRMEK-----RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP-----DSI 574 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~ 574 (844)
++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchH
Confidence 3444445778888899999999999988742 2456777788899999999999999999988 678 356
Q ss_pred HHHHHHHHHh----ccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CC----------CC
Q 003148 575 VFVGVLTACS----HGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PV----------EP 639 (844)
Q Consensus 575 t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----------~p 639 (844)
+...+..++. ..+++++|..+|+++.+. .|+......+..++.+.|++++|++.++.+ .. .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 6666665532 234899999999998773 344223334455888999999999998765 21 25
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 640 -NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 640 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
|+.+...++......|+ +|.+.++++.+..|+++...
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 45566566666666776 88999999999999997443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-06 Score=81.63 Aligned_cols=172 Identities=13% Similarity=-0.023 Sum_probs=132.9
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 003148 491 AKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KRDVSAWTAAIGAMAMEG----NGEQAVELFNEML 565 (844)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 565 (844)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.. ..+...+..|...|.. + +.++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 56667778888888899999999998876 4467788888888877 6 8999999999998
Q ss_pred HCCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHh----cCChHHHHHHHHh
Q 003148 566 RQGIKPDSIVFVGVLTACSH----GGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMVDLLGR----AGLLGEALDLIKS 634 (844)
Q Consensus 566 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~eA~~~~~~ 634 (844)
+.| +...+..+...|.. .+++++|.++|++..+ ..|. ...+..|..+|.. .++.++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55677777778877 7899999999999877 3343 6778888899988 7899999999998
Q ss_pred C-CCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 003148 635 M-PVEPNDVIWGSLLAACQKH-Q-----NVDIAAYAAERITELDP 672 (844)
Q Consensus 635 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 672 (844)
. ...++...+..|...|... | |.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8 3334666777777777542 3 89999999999988764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.8e-07 Score=79.33 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566777788888888888888877 4445 567888888899999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 003148 688 AGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 688 ~g~~~~a~~~~~~m~~~ 704 (844)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-07 Score=85.27 Aligned_cols=109 Identities=9% Similarity=-0.033 Sum_probs=78.3
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+..+...+...|++++|...|+...+ ..|+ ...|..+..+|.+.|++++|++.++++ ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 44544 3455566666777777777777777666 3343 556667777777777777777777776 3445 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
..+..++...|++++|+..+++++++.|+++.....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 888888899999999999999999999988765433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=81.65 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...|++..+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33344444455555555555555544 222 2445555666666666666666666655 2333 4567888888889
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHH--HHHHHHHcCCchHHHHHHHHHHh
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVL--LSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..|++++|...+++++++.|+++..+.. ++..+...|++++|.+.+....+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998877744 44448888999999998887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=76.33 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
.+..+...+...|++++|.++++++.+.. +.+...+..++..|.+.|++++|..+++++ ...| +..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34444555555555555555555555411 112445556666666667777776666665 2223 5667888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
..|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999888888888876654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-07 Score=81.13 Aligned_cols=104 Identities=10% Similarity=-0.062 Sum_probs=88.1
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+..+...+...|++++|...|+++.+ +.|+ ...|..+..+|.+.|++++|++.|+++ .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 56665 4677788888899999999999999988 5565 677888999999999999999999988 5556 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..+..++...|++++|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-07 Score=92.18 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=135.9
Q ss_pred hcCCHHHHHHHHHhcC---CCCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCChh--------------
Q 003148 519 RCGDPQRAMQVFRRME---KRDVSAWTAA-------IGAMAMEGNGEQAVELFNEMLRQGIKPDSI-------------- 574 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 574 (844)
..++...|.+.|.+.. ......|+.+ ...+...++..+++..+.+-++ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888999998876 3356788887 4566666666666666665554 555431
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----H
Q 003148 575 --------VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPND----V 642 (844)
Q Consensus 575 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~----~ 642 (844)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355677889999999999988865 3455335666777899999999999999877434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELD--PE-KSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778889999999999999999998533 54 4457788999999999999999999999875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.6e-07 Score=84.00 Aligned_cols=117 Identities=8% Similarity=0.075 Sum_probs=79.7
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH-HHhcCCH--H
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA-CQKHQNV--D 658 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 658 (844)
..|++++|...++...+ ..|+ ...|..+...|...|++++|.+.++++ ...| +...|..+... +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHH---HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45556666666666555 2232 455666666677777777777776665 2333 45567777767 6677887 8
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888887765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=9.3e-07 Score=97.93 Aligned_cols=116 Identities=9% Similarity=0.048 Sum_probs=89.9
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 658 (844)
.+...|++++|.+.++++.+ +.|+ ...|..+..+|.+.|++++|++.++++ ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 45566777777777777766 3444 567777778888888888888888776 4555 4668889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCchHHHHHHHH
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNI--YASAGKWTNVARVRLQ 700 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 700 (844)
+|+..++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8899999999999874
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=77.02 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHH
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAAC 651 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 651 (844)
.+..+...+...|++++|...+++..+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIE---LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 344445555555666666666665554 222 2445556666666677777777776665 3334 456788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
...|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999889999999998888763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=77.72 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.+..+...|...|++++|.+.++++ ...| +...|..+...+...|++++|...++++++++|++...+..++.++...
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 3444444444444444444444443 2223 4567777788888888999999999999999998888888888888776
Q ss_pred CC
Q 003148 689 GK 690 (844)
Q Consensus 689 g~ 690 (844)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 54
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-06 Score=83.12 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=93.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH-HHhcCCh-
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL-LGRAGLL- 625 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~- 625 (844)
..|++++|+..+++.++ ..|+. ..+..+...|...|++++|..+|+++.+ +.|+ ...+..+..+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45677778888887777 45544 5677777778888888888888888776 3343 5566777777 7788888
Q ss_pred -HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 626 -GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 626 -~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
++|.+.++++ ...| +...|..+...+...|++++|...+++++++.|+++.....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 8888888877 4445 46688888889999999999999999999999988655443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-05 Score=79.17 Aligned_cols=158 Identities=10% Similarity=-0.006 Sum_probs=120.6
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCC---CH-----h-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCh----hHHHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKR---DV-----S-AWTAAIGAMAMEGNGEQAVELFNEMLRQGIK-PDS----IVFVG 578 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~---~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 578 (844)
.+..+.+.|++++|...++...+. +. . .+..+...+...|++++|+..|++.++.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999986632 11 1 2334666677778999999999999984322 222 26888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhc----CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hHHHH
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIH----GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-------PVEPN-DVIWG 645 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~ 645 (844)
+...|...|++++|..+|+++.+.. +..+. ...|..+...|.+.|++++|.+++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988522 12222 347888999999999999999999876 11222 55788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 003148 646 SLLAACQKHQ-NVDIAAYAAERITEL 670 (844)
Q Consensus 646 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 670 (844)
.+..++...| +.++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 469999999999864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=6.9e-07 Score=78.24 Aligned_cols=96 Identities=17% Similarity=0.064 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+.+.|++++|...+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..|+.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345666788899999999999999988 5556 57788889889999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-07 Score=82.01 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=76.9
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+..+...+...|++++|...|+.+.+ ..|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34433 3444555566666777777777776665 3343 555666777777777777777777766 3344 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
..+..++...|++++|...+++++++.|+++.......
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 78888888899999999999999999998876655543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.9e-05 Score=77.84 Aligned_cols=224 Identities=8% Similarity=0.036 Sum_probs=162.6
Q ss_pred ChHHHHHHHHHHHhCCcccChhh-HHhHHHHccccC--chHHHHHHHHHHHHhCCCCchhHHhHHhhhH----Hhc---C
Q 003148 452 MFEEAMELFRVMLSERIKVDRVT-MVGVASACGYLG--ALDLAKWIYAYIEKNGIHCDMQLATALVDMF----ARC---G 521 (844)
Q Consensus 452 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~k~---g 521 (844)
..++|++++.+++. +.|+..| ++.--.++...+ .++++...+..++....+ +..+++--...+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 34577777777765 3555443 233333334455 777777777777766533 333444333333 344 7
Q ss_pred CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc------H
Q 003148 522 DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE--QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL------V 589 (844)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~------~ 589 (844)
+++++..+++.+. .+|..+|+--.-.+.+.|.++ ++++.++++++ ..|.. ..|..-.....+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 8999999999887 567888988888888889888 99999999999 55654 667766666777776 9
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCChHHHHHHHHHHHhcCCHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGE-ALDLIKSM-PV----EPNDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
++++++++.++. ..|+ ...|+.+..++.+.|+..+ +.++.++. .. ..+...|..++..+.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999988 4555 7788889999999998544 66677776 22 2366789999999999999999999
Q ss_pred HHHHHHh-cCCCCCchHHHHHH
Q 003148 663 AAERITE-LDPEKSGVHVLLSN 683 (844)
Q Consensus 663 ~~~~~~~-~~p~~~~~~~~l~~ 683 (844)
+++.+.+ .+|-...+|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999997 89988777765543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.8e-07 Score=89.42 Aligned_cols=137 Identities=15% Similarity=0.005 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDL 618 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~ 618 (844)
+-.+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+...+ .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 34456677888899999988888876 456665555666678889999999999986544 11 111 2356778889
Q ss_pred HHhcCChHHHHHHHHhC---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 619 LGRAGLLGEALDLIKSM---PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
+.+.|++++|++.+++. +..|. ...+..+..++.+.|+.++|...++++++.+|+ +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999987 22253 336777788899999999999999999999998 65555553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=72.89 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KSGVHVLLSNI 684 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 684 (844)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777788888888888888776 3334 5667888888888999999999999999999998 88889999999
Q ss_pred HHHc-CCchHHHHHHHHHHhCC
Q 003148 685 YASA-GKWTNVARVRLQMKEQG 705 (844)
Q Consensus 685 ~~~~-g~~~~a~~~~~~m~~~~ 705 (844)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=76.90 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG-------VHVLL 681 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 681 (844)
.+..++..+.+.|++++|++.|+++ .+.| +...|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566788888899999999998887 5556 4668889999999999999999999999999987754 56778
Q ss_pred HHHHHHcCCchHHHHHHHHHHh
Q 003148 682 SNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999988765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-07 Score=88.13 Aligned_cols=170 Identities=8% Similarity=-0.051 Sum_probs=104.4
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLV 589 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 589 (844)
.+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++ ..|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hH
Confidence 33444555667777666654332 1345677777778888888888888888877 44433211000 00
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+.-. .. .....|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01245667778888888888888888876 4444 5668888888999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHHcCCchHHH-HHHHHHHh
Q 003148 668 TELDPEKSGVHVLLSNIYASAGKWTNVA-RVRLQMKE 703 (844)
Q Consensus 668 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 703 (844)
++++|+++.++..++.++...|+.+++. ..++.|-.
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888887776 44544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=87.24 Aligned_cols=168 Identities=6% Similarity=-0.097 Sum_probs=115.3
Q ss_pred HHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 524 QRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 524 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
+.+..+|+++. ..+...|-..+.-+.++|+.++|..+|++.+.. |+...+......+...+. .++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHH
Confidence 44567777765 345778988888889999999999999999995 776543332222222221 133332
Q ss_pred hhcC--------CCC---CcchHHHHHHHHHhcCChHHHHHHHHhCCCCC--ChHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 003148 601 DIHG--------VSP---QIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP--NDVIWGSLLAACQK-HQNVDIAAYAAER 666 (844)
Q Consensus 601 ~~~~--------~~p---~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~ 666 (844)
+.+- ..+ ....|...++.+.+.|.++.|.++|+++ ..| +..+|......-.. .++.+.|..+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 2110 001 1245667777777888999999999998 333 33455433322222 3469999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
+++.-|+++..+...++...+.|+.+.|+.+++.+
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988988877777888888999999999999886
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-06 Score=93.58 Aligned_cols=119 Identities=7% Similarity=-0.011 Sum_probs=80.2
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSH 585 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 585 (844)
+..+...|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++.++ +.|+. ..+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3445566777888888888887665 34567777888888888888888888888887 56654 567777777778
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH--HHhcCChHHHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL--LGRAGLLGEALDLIK 633 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~eA~~~~~ 633 (844)
.|++++|.+.|+++.+ +.|+ ...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888887776 3343 3444445444 666777777777776
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-05 Score=81.41 Aligned_cols=163 Identities=9% Similarity=-0.007 Sum_probs=122.2
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--h
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRMEK---RDV------SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIK---PD--S 573 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~ 573 (844)
..+...+..|...|++++|.+.+....+ ... ..+..+...+...|++++|+..|++.++.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567788899999999999876542 111 22344566677889999999999999863221 22 2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN------- 640 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~------- 640 (844)
.++..+...|...|++++|..+|+++.+.....|+ ...|..+...|.+.|++++|.+++++. .+.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999998842222333 257889999999999999999999876 11111
Q ss_pred hHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 003148 641 DVIWGSLLAACQKHQNVDIA-AYAAERITEL 670 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 670 (844)
..+|..+...+...|+.++| ...+++++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55788888899999999999 7778888763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=77.66 Aligned_cols=93 Identities=9% Similarity=-0.026 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PV---EP-N----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KS---- 675 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~---- 675 (844)
.+..+...|...|++++|.+.+++. .. .+ + ..++..+...+...|++++|...+++++++.+. ++
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444445555555555555555443 10 11 1 224555666667777777777777777654321 11
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..+..++.+|...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2346778888888888888887777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.3e-06 Score=72.89 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 556778888899999999999999987 5555 56788999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.+++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=79.45 Aligned_cols=93 Identities=18% Similarity=0.105 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444555555555555555555554 3333 3445666666666666666666666666666666666666666666666
Q ss_pred CCchHHHHHHHHHHh
Q 003148 689 GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 g~~~~a~~~~~~m~~ 703 (844)
|++++|.+.+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.6e-06 Score=79.70 Aligned_cols=153 Identities=12% Similarity=-0.005 Sum_probs=105.6
Q ss_pred hcCCHHHHHH---HHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCh-hHHHHHHHHHhccCcHH
Q 003148 519 RCGDPQRAMQ---VFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLR----QGIKPDS-IVFVGVLTACSHGGLVN 590 (844)
Q Consensus 519 k~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~ 590 (844)
..|++++|.+ .+..-+......|..+...|...|++++|+..+++.++ .|..|.. .++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4677788877 55443334456777788888888888888888887765 1222222 45677777888888999
Q ss_pred HHHHHHHHhHhhcCCCC-C----cchHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----hHHHHHHHHHHHhcCCH
Q 003148 591 QGWHLFRSMTDIHGVSP-Q----IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN----DVIWGSLLAACQKHQNV 657 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 657 (844)
+|..++++..+...-.+ + ...+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 98888888776322122 1 345777888888899999998888776 11122 22456777788889999
Q ss_pred HHHHHHHHHHHhcC
Q 003148 658 DIAAYAAERITELD 671 (844)
Q Consensus 658 ~~a~~~~~~~~~~~ 671 (844)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-06 Score=77.67 Aligned_cols=64 Identities=5% Similarity=-0.026 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.3e-06 Score=77.65 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA 650 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 650 (844)
..+..+...+...|++++|+.+|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455555556666666666666666655 3343 556666777777777777777777766 4445 46688889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
+...|++++|+..++++++++|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=5e-06 Score=74.23 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=81.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 608 QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 608 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
+...|..+...+...|++++|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3556777777888888888888888776 3344 4668888888889999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 003148 686 ASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 686 ~~~g~~~~a~~~~~~m~~~ 704 (844)
...|++++|.+.+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999888764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.9e-06 Score=70.01 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445555566666666666666655 2233 4555666666666666777777777777776666666666677777777
Q ss_pred CCchHHHHHHHHHHh
Q 003148 689 GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 g~~~~a~~~~~~m~~ 703 (844)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777766666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-06 Score=73.77 Aligned_cols=107 Identities=10% Similarity=-0.040 Sum_probs=67.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33444445555555555555555544 2232 445555666666666666666666655 3344 4557777888888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 003148 653 KHQNVDIAAYAAERITELD------PEKSGVHVLLSNIY 685 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 685 (844)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888888 77766666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-05 Score=73.07 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334445555556666666666666555 44454 3456666666666666666666666666666666666666666
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 003148 684 IYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 684 ~~~~~g~~~~a~~~~~~m~~ 703 (844)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=69.61 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778899999999999999999988 3334 56788999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.7e-07 Score=99.91 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=110.5
Q ss_pred hcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 003148 519 RCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
..+++++|...|+...+ .....|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~~ 312 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKAS 312 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHHH
Confidence 34455555555544332 2345677777778888888888888888777 44443210 0 0111110
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 596 FRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 596 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
- . -....|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|+
T Consensus 313 ~-~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 313 E-S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp H-H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred H-H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0 0 01346778888888999999999998887 4455 5668899999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCchHHHH-HHHHHHh
Q 003148 674 KSGVHVLLSNIYASAGKWTNVAR-VRLQMKE 703 (844)
Q Consensus 674 ~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 703 (844)
+..++..++.++...|+++++.+ .++.|-.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998874 4454443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-05 Score=79.85 Aligned_cols=230 Identities=11% Similarity=0.098 Sum_probs=154.6
Q ss_pred CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC-CHHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG-DPQRAMQV 529 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~~~ 529 (844)
.++.+|...++.+.+.+. ..+++..+...++.... .+..+++.--..+...| .+++++++
T Consensus 51 ~~y~~~~~~~r~~~~~~e------------------~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~ 111 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEE------------------KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRL 111 (349)
T ss_dssp HHHHHHHHHHHHHHHTTC------------------CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 356666666666655442 22456666666666552 24455565555566667 58999999
Q ss_pred HHhcC---CCCHhHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHH--------HHHHH
Q 003148 530 FRRME---KRDVSAWTAAIGAMAME-G-NGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVN--------QGWHL 595 (844)
Q Consensus 530 ~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~--------~a~~~ 595 (844)
++.+. .++..+|+.-...+.+. + ++++++++++++++ ..|.. ..|..-.....+.|.++ +++++
T Consensus 112 ~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 112 MNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 88876 45677888877777666 6 88999999999988 56654 56665555555555555 88999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCC-------hHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCH--------
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGL-------LGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNV-------- 657 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~-------~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-------- 657 (844)
++++.+ ..|. ...|+....++.+.|+ +++++++++++ ...| |...|+-+...+.+.|+.
T Consensus 190 ~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 190 CNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 998887 3443 6677777788887776 68899998877 4455 677898887777766543
Q ss_pred ------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 658 ------------DIAAYAAERITELD------PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 658 ------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.........+.... +..+-+...|+++|...|+.++|.++++.+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222333332222 334446678999999999999999999998753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=69.66 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...++...+ ..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555555555555555544 222 2445555666666666666666666655 3334 4567778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999998877777666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.9e-06 Score=72.41 Aligned_cols=92 Identities=18% Similarity=0.079 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEK---SGVHVLLSNI 684 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 684 (844)
..+...+.+.|++++|.+.|++. ...|+. ..|..+..++...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34566677788888888887776 333432 367777778888888999999999888888888 6668888888
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 003148 685 YASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 685 ~~~~g~~~~a~~~~~~m~~~ 704 (844)
|...|++++|.+.++.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999888887764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=75.83 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITEL-------DPEKSGVH----VLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..|..+..++...|++++|+..+++++++ +|+++..| ..++.++...|++++|.+.+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888888899999999999999999999 99998899 99999999999999999999988763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=74.11 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMV 616 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 616 (844)
..|..+...+...|++++|+..|++.++ ..|+ ...+..+...+...|++++|...+++..+ ..|+ ...|..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 3566667777778888888888888777 4554 35667777777788888888888888776 3343 56677778
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGS--LLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
..|.+.|++++|.+.++++ ...| +...|.. ++..+...|++++|...+++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888776 3334 3444533 33336667888888888776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=72.29 Aligned_cols=107 Identities=12% Similarity=-0.019 Sum_probs=65.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLA 649 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 649 (844)
+..+...+...|++++|..+|++..+ ..|+ ...|..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33333344444444444444444433 2233 334455555566666666666666554 2334 4567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
++...|++++|...++++++++|++...+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888889999999999999999998877766666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=69.86 Aligned_cols=96 Identities=18% Similarity=0.070 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456777889999999999999999987 3444 57788889999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999988764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=9.3e-06 Score=85.43 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=75.0
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME--KR-D---------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+...+..+...|.+.|++++|...|++.. .| + ...|..+...|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 46678889999999999999999999876 22 2 35666677777777777777777777766
Q ss_pred CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHH
Q 003148 568 GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 568 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 628 (844)
+.|+. ..+..+..++...|++++|+..|+++.+ +.|+ ...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45543 4555555566666666666666666555 2333 23333344444444444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.2e-05 Score=86.13 Aligned_cols=168 Identities=10% Similarity=0.033 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcc
Q 003148 521 GDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN----------GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHG 586 (844)
Q Consensus 521 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 586 (844)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++++ ..|+. .+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888776 4456788887777777777 8999999999999 67766 6788888888888
Q ss_pred C--cHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc------
Q 003148 587 G--LVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG-LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH------ 654 (844)
Q Consensus 587 g--~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 654 (844)
| +++++++.++++.+ ..|+ ...|+....++.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 77999999999998 4555 667888888888999 899999999998 6666 677999888877653
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 003148 655 --------QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 655 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 693 (844)
+.++++.+.++++++++|++..+|..+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-06 Score=71.80 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
..|..+...+.+.|++++|++.|++.++ +.|+. ..|..+..+|...|++++|++.+++..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3466677777777778888888877777 56665 4566677777777777777777777765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=68.24 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC---ChHHHHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP---NDVIWGSLL 648 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p---~~~~~~~ll 648 (844)
..+..+...+...|++++|..+|+++.+ ..| +...+..+...|.+.|++++|.+.+++. ...| +..+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ---LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3455555566666666666666666665 223 2455666777777777777777777766 3344 366788888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 003148 649 AACQKH-QNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 649 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..+... |+.++|.+.++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 899999999999988888764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.08 E-value=9.8e-06 Score=72.30 Aligned_cols=97 Identities=12% Similarity=-0.065 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA 650 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 650 (844)
..+..+...+...|++++|...|+...+ ..|+ ...|..+..+|...|++++|...+++. ...| +...|..+...
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4455555555666666666666666555 2233 445666666666667777776666665 3334 45677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 003148 651 CQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+...|++++|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888876
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=5e-06 Score=75.00 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC-CCcchHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVS-PQIVHYGCMVDL 618 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~ 618 (844)
.|......+.+.|++++|+..|++.++ +.|+...- ++ .... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 455566667777777777777777777 55551000 00 0000 001144444555
Q ss_pred HHhcCChHHHHHHHHhC--------CCCCCh-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 619 LGRAGLLGEALDLIKSM--------PVEPND-VIW----GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..++++++++|++.+.+--+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 55555555555444443 347864 488 8999999999999999999999999999987665444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.1e-06 Score=70.95 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=61.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...|+++.+ ..|+ ...|..+..++.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555566666666666666665 3343 555666666777777777777777666 4445 4557777878888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003148 653 KHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..|+.++|+..++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-05 Score=68.78 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=78.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHH
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK-------SGVHVL 680 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 680 (844)
..+..+...+...|++++|...+++. ...| +..+|..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777788888888888888876 3334 56678888888899999999999999999988876 678889
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-06 Score=73.15 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=61.2
Q ss_pred hcCChHHHHHHHHhC-CC---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 621 RAGLLGEALDLIKSM-PV---EP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
..|++++|++.|++. .. .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777766 44 24 34577777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhC
Q 003148 696 RVRLQMKEQ 704 (844)
Q Consensus 696 ~~~~~m~~~ 704 (844)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=4.4e-05 Score=73.26 Aligned_cols=94 Identities=11% Similarity=-0.050 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-N----------------DVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
.+..+...+.+.|++++|.+.|++. ...| + ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555556666666666666554 2222 1 26788888899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 673 EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 673 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++..+..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00019 Score=73.87 Aligned_cols=176 Identities=10% Similarity=0.074 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc-HHHHHHH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN--GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL-VNQGWHL 595 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~-~~~a~~~ 595 (844)
++++..+++.+. .++..+|+.-.-.+...|+ +++++++++++++ ..|.. ..|..-...+.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456666666555 4566777776666666663 6788888888887 45544 566665556666666 5788888
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc----
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRA--------------GLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH---- 654 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~--------------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---- 654 (844)
++.+.+ ..|+ ...|+....++.+. +.++++++++++. ...| |...|+-+-+.+...
T Consensus 168 ~~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 888777 3343 55566665555554 4577888888776 3445 667887666555544
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HHcCCchHHHHHHHHHHh
Q 003148 655 -------QNVDIAAYAAERITELDPEKSGVHVLLSNIY---ASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 655 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 703 (844)
+.++++++.++++++++|++.-.+..++.+. ...|..++....+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3578888889999999998743333332221 134666677777777665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=9e-06 Score=74.60 Aligned_cols=93 Identities=15% Similarity=0.042 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM----PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE------KSG 676 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 676 (844)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555556666666666655554 10111 335666777777888888888888888765322 134
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577888999999999999998887764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00036 Score=71.80 Aligned_cols=191 Identities=11% Similarity=0.073 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC--CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG--DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN-GEQAVELF 561 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 561 (844)
++.+..++..+.... +.+..+|+--...+.+.| .++++..+++.+. .+|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566677777777654 335666666666666667 4889999998887 5677889888888888888 58999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhcc--------------CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc---
Q 003148 562 NEMLRQGIKPDS-IVFVGVLTACSHG--------------GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA--- 622 (844)
Q Consensus 562 ~~m~~~g~~p~~-~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--- 622 (844)
+++++ ..|+. ..|+.....+.+. +.++++++++..... ..|+ ...|+.+-.++.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 99998 56655 5565554444433 568899999999987 5565 66777666666665
Q ss_pred --------CChHHHHHHHHhC-CCCCChHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 623 --------GLLGEALDLIKSM-PVEPNDVIWGSLLAAC-----QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 623 --------g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
+.++++++.++++ ...||. .|.-+..+. ...|..++....+.++.+++|...+.|.-|..-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 5688999999988 677876 565433332 2357788899999999999998887777665443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.2e-05 Score=84.56 Aligned_cols=187 Identities=7% Similarity=-0.042 Sum_probs=128.1
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChh-
Q 003148 517 FARCGDPQRAMQVFRRMEKR-----D---------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ-GIKPDSI- 574 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~- 574 (844)
+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|.+.+.++... +..++..
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 44566666666666655411 0 123667888899999999999988887652 1122221
Q ss_pred ---HHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC
Q 003148 575 ---VFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-----P--VEPN 640 (844)
Q Consensus 575 ---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-----~--~~p~ 640 (844)
....+...+...|..+++..+++...... +..+. ...+..++..|...|++++|.+++++. . -+|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 22333334556788999999988876522 22222 446778899999999999999998876 1 1222
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 641 -DVIWGSLLAACQKHQNVDIAAYAAERITELDPE---K----SGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 641 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..++..++..|...|++++|...+++++...+. + ...+..++.++...|+|++|.+.+....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 347778888899999999999999999875432 2 13566778888899999999888776643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.6e-05 Score=66.41 Aligned_cols=99 Identities=11% Similarity=-0.007 Sum_probs=61.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHH
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQI----VHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAA 650 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~ 650 (844)
...+...|++++|...|+.+.+ ..|+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLE---LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3344455555555555555554 12321 24555666666666666666666665 22333 3456677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+...|+.++|...++++++..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8888889999999998888888876544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=74.36 Aligned_cols=76 Identities=18% Similarity=0.049 Sum_probs=61.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS-GVHVLLSNI 684 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 684 (844)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....|..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777888888899999999888887 4555 466888899999999999999999999999999987 445555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=84.34 Aligned_cols=147 Identities=10% Similarity=-0.008 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
..|..+...+.+.|++++|+..|++.++ ..|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677788888999999999999887 5666542 234455555443321 1267788889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHHcCCchHHH
Q 003148 619 LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI-YASAGKWTNVA 695 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~ 695 (844)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4455 566888888899999999999999999999999998888888888 44567788888
Q ss_pred HHHHHHHhCC
Q 003148 696 RVRLQMKEQG 705 (844)
Q Consensus 696 ~~~~~m~~~~ 705 (844)
+.+++|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888886543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=80.19 Aligned_cols=103 Identities=12% Similarity=-0.076 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHH
Q 003148 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLA 649 (844)
Q Consensus 573 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~ 649 (844)
...+..+...+...|++++|...|++..+ ..| +...|..+...|.+.|++++|++.+++. ...|+ ...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677778888888999999999988887 445 3667888888888999999999888886 56664 557888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
++...|++++|+..++++++++|+++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhH
Confidence 88888999999999999988888765443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=70.12 Aligned_cols=113 Identities=7% Similarity=-0.007 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
.|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|..+++++.+.. |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 455555556666666666666666555 23332 344444444555555555555555444311 10
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 619 LGRAGLLGEALDLIKSMPVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
..++ ..+|..+...+...|++++|...++++++..| ++.....+..++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0112 44666777777788888888888888888877 4555555554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.95 E-value=8.9e-06 Score=85.64 Aligned_cols=113 Identities=7% Similarity=-0.077 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKH 654 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 654 (844)
.+..+...+...|++++|...|++..+ +.|+.. .+...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 355667788899999999999999877 334422 2334455555554442 23788888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=6e-06 Score=71.61 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=60.6
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
.|++++|+..|++..+...-.|+ ...+..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35556666666666551000232 455666677777777777777777766 3344 45677778888888888999999
Q ss_pred HHHHHHhcCCCCCchHH
Q 003148 663 AAERITELDPEKSGVHV 679 (844)
Q Consensus 663 ~~~~~~~~~p~~~~~~~ 679 (844)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999888888765443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.4e-05 Score=84.74 Aligned_cols=122 Identities=9% Similarity=0.009 Sum_probs=84.9
Q ss_pred hccCcHHHHHHHHHHhHhhcC--C---CCC-cchHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCh-HHHHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHG--V---SPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM---------PVEPND-VIWGSL 647 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~--~---~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~l 647 (844)
...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555555555555443211 1 122 345666666677777777776666554 334554 378888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 648 LAACQKHQNVDIAAYAAERITE-----LDPEKSGV---HVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
...|..+|++++|+..++++++ +.|++|.+ ...|..++...|++++|+.++.++++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999986 57877654 4578888999999999999999998864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-05 Score=82.78 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVD 617 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 617 (844)
..|..+...+.+.|++++|++.|++.++ +.|+.. ..-.. +...+ ..|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~-------~~~~~---~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAED-------ADGAK---LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCH-------HHHGG---GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccCh-------HHHHH---HHHHHHHHHHHHHH
Confidence 4577777888888888888888888776 111110 00001 11111 2232 567888899
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 6666 46688889999999999999999999999999999999999999998888887765
Q ss_pred H
Q 003148 696 R 696 (844)
Q Consensus 696 ~ 696 (844)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00027 Score=73.12 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcc-C-cHHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEG-NGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHG-G-LVNQG 592 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~-g-~~~~a 592 (844)
.+..++|+++++.+. ..+...|+.--..+...| .+++++++++.++. ..|.. ..|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 345567888888776 446778998888888888 59999999999998 77877 4566655555555 6 78999
Q ss_pred HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChH--------HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC-----
Q 003148 593 WHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLG--------EALDLIKSM-PVEP-NDVIWGSLLAACQKHQN----- 656 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~--------eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----- 656 (844)
+++++.+.+ ..|. ...|+....++.+.|+++ +++++++++ ...| |...|+.........+.
T Consensus 145 L~~~~k~L~---~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLL---PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTS---SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 999999987 4454 556766666676666666 899999888 4445 77799988888877775
Q ss_pred --HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc
Q 003148 657 --VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691 (844)
Q Consensus 657 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 691 (844)
++++++.++++++++|+|.+++..+..++.+.|+-
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999998888888775
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5.8e-05 Score=80.27 Aligned_cols=111 Identities=8% Similarity=-0.041 Sum_probs=84.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHHHh
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~ 653 (844)
.+..+...+...|++++|+..|++..+. .+.. ...-..+++. ...| +..+|..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 4666777777888888888888777661 1110 0001111111 1233 45688889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.5e-05 Score=83.20 Aligned_cols=64 Identities=9% Similarity=-0.041 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999998875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.9e-05 Score=68.96 Aligned_cols=132 Identities=15% Similarity=0.001 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cch
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIK-PDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVH 611 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 611 (844)
+..+...|...|++++|+..+++.++.... ++. .++..+...+...|++++|..++++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444555555555555555554431100 111 24445555566666666666666665442111111 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-------PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|+.++|...+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 556666677777777777766654 1111 123566677778888899999988888887543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.74 E-value=6e-05 Score=64.83 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=67.1
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666665 4455 56788889899999999999999999999999999999999999999999999999999888764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=71.76 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=66.6
Q ss_pred HhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 620 GRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN----------VDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666665 3444 45566666666665554 5699999999999999999999999999998
Q ss_pred cC-----------CchHHHHHHHHHHhCC
Q 003148 688 AG-----------KWTNVARVRLQMKEQG 705 (844)
Q Consensus 688 ~g-----------~~~~a~~~~~~m~~~~ 705 (844)
.| ++++|.+.+++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=61.44 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999999999999999999999999999999988754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00017 Score=78.80 Aligned_cols=158 Identities=9% Similarity=0.005 Sum_probs=118.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh----------------hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCc
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDS----------------IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI 609 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 609 (844)
..+.+.|++++|++.|.++++....... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999999984322111 136788899999999999999999988744333332
Q ss_pred ----chHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------
Q 003148 610 ----VHYGCMVDLLGRAGLLGEALDLIKSM-------PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELD------ 671 (844)
Q Consensus 610 ----~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 671 (844)
...+.+...+...|+.++|.+++++. ...+. ..++..|...+...|++++|...+++++..-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344455556778999999888765 22233 4477888889999999999999999988631
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|....++..++.+|...|+|++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22235788999999999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.3e-05 Score=64.99 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVL 680 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 680 (844)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667778888888888888888877 4445 56788888889999999999999999999999998 667788
Q ss_pred HHHHHHHcCCchHHHHHH
Q 003148 681 LSNIYASAGKWTNVARVR 698 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~ 698 (844)
++.++...|++++|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 888888888877766544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=78.59 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=88.7
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHH
Q 003148 618 LLGRAGLLGEALDLIKSM---------PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKSG---VHV 679 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 679 (844)
.+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+..++++++ +.|++|. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 233443 3889999999999999999999999986 4666654 677
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 003148 680 LLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRD 750 (844)
Q Consensus 680 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 750 (844)
.|+.+|...|++++|..++++..+-.. +. .| ..||...++..++.+...++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VT----------------HG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------TC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HH----------------hC-CCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998875311 11 12 2499999988888777655543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=58.51 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=64.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777777888888888887776 3334 46678888888899999999999999999999999888888888887
Q ss_pred HcC
Q 003148 687 SAG 689 (844)
Q Consensus 687 ~~g 689 (844)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0002 Score=77.33 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=80.6
Q ss_pred HHhcCChHHHHHHHHhC------CCCC---C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHH
Q 003148 619 LGRAGLLGEALDLIKSM------PVEP---N-DVIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKS---GVHVL 680 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 680 (844)
+.+.|++++|++++++. -+.| + ..+++.|..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455555555555443 1222 2 23778888888888999999998888886 455555 46778
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLR 749 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 749 (844)
|+.+|...|++++|..++++..+-- .+. .| ..||...+++..|.+...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~-~~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM-RVT----------------HG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHH----------------TC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH-HHh----------------cC-CCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887631 111 12 249999999999998887775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=4.8e-05 Score=68.38 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=60.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH----------HHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV----------NQGWHLFRSMTDIHGVSPQ-IVHYGCMV 616 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p~-~~~~~~li 616 (844)
.+.+++++|++.+++.++ ..|+. ..|..+..++...|.+ ++|+..|++..+ +.|+ ...|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 355566777777777776 55654 4555566666665543 345555554444 3343 33444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 617 DLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
.+|...|++ .|+.. ...|++++|+..++++++++|++..+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 444443332 22221 01258999999999999999998533
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00057 Score=76.87 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=122.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCc----------HHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGL----------VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 618 (844)
....++|++.++++++ +.|+.. .|+.--.++.+.|. ++++++.++.+.+ ..|. ...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3456789999999999 889885 46655556666666 9999999999988 4455 6678888888
Q ss_pred HHhcC--ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-----
Q 003148 619 LGRAG--LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ-NVDIAAYAAERITELDPEKSGVHVLLSNIYASA----- 688 (844)
Q Consensus 619 ~~~~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 688 (844)
+.+.| ++++|+++++++ ...| |..+|+.-.......| ..+++.+.++++++.+|+|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999 779999999999 5555 6779999888888888 899999999999999999999999999998874
Q ss_pred ---------CCchHHHHHHHHHHh
Q 003148 689 ---------GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 ---------g~~~~a~~~~~~m~~ 703 (844)
++++++.+.++...+
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 557888888777653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00097 Score=69.86 Aligned_cols=394 Identities=12% Similarity=0.059 Sum_probs=225.7
Q ss_pred CcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHH
Q 003148 63 KPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFP 142 (844)
Q Consensus 63 ~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 142 (844)
.+.+|..|-.++...|. +.+|...|= ...|...|..+|.+..+.|.+++-+..+...++. .-++..=+
T Consensus 53 ~p~VWs~LgkAqL~~~~---v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGM---VKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp CCCCSSSHHHHTTTSSS---CTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred CccHHHHHHHHHHccCc---hHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 55678878878777777 777766554 2346667788888888888888888776555543 33455567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---------------------
Q 003148 143 FVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE--------------------- 201 (844)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------------- 201 (844)
.|+-+|++.+++.+-..... .||+.-.....+-+...|.++.|+-+|..+..
T Consensus 121 eLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888877655333221 35554445566666777777777777776642
Q ss_pred ---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCC-CcchhHH
Q 003148 202 ---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGM-KANALMV 277 (844)
Q Consensus 202 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~ 277 (844)
.++.+|-.+-.+|+..+.+.-|.-.--.++ +.| .....++.-|-..|.+++-..+++.-. |+ .....++
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vha--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmF 266 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMF 266 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCS--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccH--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHH
Confidence 366788888888888888776654433333 112 223345556667777777777776654 33 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC----C-------CceehHHHHHHHHHcCChHHHHHHH-------------HHHHh
Q 003148 278 NALVDMYMKCGAVDTAKQLFGECKD----R-------NLVLCNTIMSNYVRLGLAREALAIL-------------DEMLL 333 (844)
Q Consensus 278 ~~Li~~y~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~ 333 (844)
+-|.-.|+|- +.++-.+-++..-. | ....|.-++-.|.+-.+++.|.... .+...
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~ 345 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 345 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH
Confidence 8888889887 34444444433222 2 3457999999999999998876431 11111
Q ss_pred cCCCCChhhHHHH---------------HHHHhhcCChhhHHHHHHHHHH----------hCCCchhhHHHHHHHHHHHc
Q 003148 334 HGPRPDRVTMLSA---------------VSASAQLGDLLCGRMCHGYVLR----------NGLEGWDSICNTMIDMYMKC 388 (844)
Q Consensus 334 ~g~~p~~~t~~~l---------------l~~~~~~~~~~~a~~i~~~~~~----------~g~~~~~~~~~~Li~~y~~~ 388 (844)
. ..|...|-.. |.++...=|...+.+++...-. ..-..+..+-.++-+.|...
T Consensus 346 K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 346 K--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp G--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred H--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 0 1233333333 3333222222222222211100 00112334555666666666
Q ss_pred CCHHHHHHHHhhcCCCCcchHHH-------------HHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHH
Q 003148 389 GKQEMACRIFDHMSNKTVVSWNS-------------LIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEE 455 (844)
Q Consensus 389 g~~~~A~~~f~~m~~~~~~~~~~-------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 455 (844)
.+++.-+.-.+.-..-|...... -...|.++++++++.++. +.-..|.-.|..-+.+|+.+-
T Consensus 424 EDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~-----KkDklykDAietAa~S~~~el 498 (624)
T 3lvg_A 424 EDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC-----KKDSLYKDAMQYASESKDTEL 498 (624)
T ss_dssp TCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCS-----STTCCTTGGGTTTTTCCCTTH
T ss_pred hhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHH-----HhcccHHHHHHHHHHcCCHHH
Confidence 66665555444333322222111 123455666666655443 223345555566666777777
Q ss_pred HHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHH
Q 003148 456 AMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKW 493 (844)
Q Consensus 456 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 493 (844)
|.++++-..+.| +...|...|-.|...=+++.+.+
T Consensus 499 aeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 499 AEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 777766666544 44456666666666555544433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0006 Score=55.72 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=59.7
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 639 PNDVIWGSLLAACQKHQN---VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+|+..|..+..++...++ .++|...++++++++|+++.....+++++.+.|++++|...++++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788888888765544 6999999999999999999999999999999999999999999998864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00024 Score=76.62 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSS 713 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 713 (844)
.+++.|..+|...|++++|+..++++++ +.|+++ ..+..|+.+|...|++++|..++++..+--. +.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~---- 415 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VA---- 415 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HH----
Confidence 3778888888888888888888888886 456655 4677899999999999999999998876311 11
Q ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHH
Q 003148 714 SIEVNGKVHEFTSGDESHPEMNNISSMLR 742 (844)
Q Consensus 714 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~ 742 (844)
.| ..||...+++..|+
T Consensus 416 ------------lG-~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 416 ------------HG-KDHPYISEIKQEIE 431 (433)
T ss_dssp ------------TC-TTCHHHHHHHHHHH
T ss_pred ------------cC-CCChHHHHHHHHHh
Confidence 12 24999888776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00049 Score=58.22 Aligned_cols=65 Identities=9% Similarity=-0.092 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 55678889999999999999999999999999999999999999999999999999999998865
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0026 Score=65.60 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=31.0
Q ss_pred CCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHH
Q 003148 535 KRDVSAWTAAIGAMA--MEGN---GEQAVELFNEMLRQGIKPDS-IVFVGVLTAC 583 (844)
Q Consensus 535 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 583 (844)
..+...|...+.+.. ..++ ..+|+.+|++.++ ..|+. ..+..+.-++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 456777777776643 2333 4789999999999 78986 3444444444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0015 Score=58.09 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCC
Q 003148 640 NDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS----AGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 640 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 705 (844)
+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34444444444444 45666666666666654 345566677777776 677777777777766654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=52.62 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00075 Score=57.73 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=49.6
Q ss_pred HHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
+...|++..+ ..|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+..++...|+.++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444 2333 445555666666666666666666655 3334 35567777777777888888888888888
Q ss_pred hcCCCC
Q 003148 669 ELDPEK 674 (844)
Q Consensus 669 ~~~p~~ 674 (844)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 777643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.011 Score=52.45 Aligned_cols=110 Identities=12% Similarity=-0.002 Sum_probs=51.0
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh----cCCHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR----CGDPQR 525 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~ 525 (844)
.+++++|++.|++..+.| .|+.. +-..+.....++.|...+....+.| +...+..|..+|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 345666666666666655 22221 3333444444555555555554443 33344444444444 444444
Q ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 003148 526 AMQVFRRME-KRDVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 526 A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 567 (844)
|.+.|++.. ..+..++..|...|.. .++.++|+++|++..+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 444444433 2233444444444444 44444444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0033 Score=67.66 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=48.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC---------CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM---------PVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITE-----LDPEK 674 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 674 (844)
.+++.|..+|...|++++|+.+++++ +..|+.. +++.|...|..+|++++|+..++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555666666666666666665554 3345543 788888889999999999999998886 56777
Q ss_pred CchH
Q 003148 675 SGVH 678 (844)
Q Consensus 675 ~~~~ 678 (844)
|.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0046 Score=54.83 Aligned_cols=66 Identities=5% Similarity=-0.065 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 639 PNDVIWGSLLAACQKHQ---NVDIAAYAAERITELD-P-EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++..+...+..++.+.+ ++++|+.+++.+++.+ | ++...++.|+-.|.+.|++++|++.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56777777777777776 6668888888888877 6 44567788888888888888888888888764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0027 Score=52.66 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=46.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
+...|..+...|.+.|++++|+..|++.++ ..|+. ..|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777888888888887777 55654 5667777777777888888877777765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0061 Score=65.75 Aligned_cols=70 Identities=20% Similarity=0.038 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM---------PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKS 675 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 675 (844)
+++.|..+|...|++++|+.+++++ +..|+. .+++.|...|..+|++++|+..++++++ +.|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444555555555555555555443 334543 3678888888888999999988888886 577776
Q ss_pred chHHH
Q 003148 676 GVHVL 680 (844)
Q Consensus 676 ~~~~~ 680 (844)
.+-..
T Consensus 411 ~~~~~ 415 (429)
T 3qwp_A 411 LIEDL 415 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.003 Score=52.02 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEP-NDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
.+..+.+.|++++|.+.++++ ...| +.. .|..+..++...|++++|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555566666666666555 3333 334 555555555666666666666666666666655444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0083 Score=61.89 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=93.0
Q ss_pred CCCChhHHHHHHHHHh--cc---CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHH----hcC-------ChHHHHHH
Q 003148 569 IKPDSIVFVGVLTACS--HG---GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLG----RAG-------LLGEALDL 631 (844)
Q Consensus 569 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~eA~~~ 631 (844)
...|...|...+.+.. .. ....+|+.+|+++.+ +.|+ ...|..+.-+|. ..+ .+.+|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445567777776543 22 346899999999998 7788 345554333332 111 11233333
Q ss_pred HHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 632 IKSMPVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 632 ~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
...+...| +..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33333333 6778888777777789999999999999999974 5677899999999999999999998887653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0065 Score=49.90 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=58.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cc-hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhc
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IV-HYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKH 654 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 654 (844)
....+...|++++|...|+++.+ ..|+ .. .+..+..+|.+.|++++|.+.|++. ...|+. ..|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 44566777888888888888877 3454 45 6777788888888888888888776 444543 23311
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 003148 655 QNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~ 675 (844)
+.++++...++++...+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 456667777777777666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.14 E-value=5.6e-05 Score=78.96 Aligned_cols=259 Identities=11% Similarity=0.080 Sum_probs=179.7
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHH
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDM 384 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 384 (844)
...|..+..++.+.++..+|++.|-+. -|...|..++.++.+.|..++-...+....+.. .++.+-+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 356888888888888887777665332 244567778888888888877777666655543 234455789999
Q ss_pred HHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVML 464 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 464 (844)
|+|.+++.+-.+++ ..||+.-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.-++
T Consensus 126 yAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK-- 195 (624)
T 3lvg_A 126 LAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK-- 195 (624)
T ss_dssp HHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--
T ss_pred HHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999876543322 23788888889999999999999988886554 477888889999999888765333
Q ss_pred hCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHH
Q 003148 465 SERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAW 541 (844)
Q Consensus 465 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~ 541 (844)
.-+..||.-+-.+|...+.+..|...--.++- .+.-...|+..|-+.|.+++-+.+++... ....-.|
T Consensus 196 ----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 196 ----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp ----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHH
T ss_pred ----cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHH
Confidence 23667899999999988887776554333322 22223458889999999999999998765 4567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
+-|.-.|++. ++++-.+.++..-. .+-.--++.+|.+...|.++.-++.
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~s------riNipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWS------RVNIPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSS------SSCCTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHH------hccHHHHHHHHHHHhhHHHHHHHHh
Confidence 9898888887 45555554443211 1112235667777777766665554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.013 Score=57.76 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=67.5
Q ss_pred hHHHHHHHHhC-CCCCC---hHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHHc-CCchH
Q 003148 625 LGEALDLIKSM-PVEPN---DVIWGSLLAACQK-----HQNVDIAAYAAERITELDPEK-SGVHVLLSNIYASA-GKWTN 693 (844)
Q Consensus 625 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 693 (844)
..+|...+++. .+.|+ ...|..|...|.+ -|+.++|++.++++++++|+. ...++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666655 55665 4477777777777 489999999999999999975 88999999998884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003148 694 VARVRLQMKEQGIRKLPG 711 (844)
Q Consensus 694 a~~~~~~m~~~~~~~~~~ 711 (844)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876554454
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.51 Score=40.10 Aligned_cols=139 Identities=8% Similarity=0.064 Sum_probs=90.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 629 (844)
-.|..++..++..+..... +..-++-++.-....-+-+-..++++..-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 4566777777777766521 2222222222222223334444455544442222 2356666666
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 003148 630 DLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 630 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 707 (844)
.-+-.++. +.......+.....+|.-++-.+++..++.-+|-++...+-++++|.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66655542 44445666778889999999999999877777777889999999999999999999999999999874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.051 Score=44.01 Aligned_cols=68 Identities=9% Similarity=-0.037 Sum_probs=52.1
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 607 PQIVHYGCMVDLLGRAGL---LGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.+...+..+..++...++ .++|..++++. ...|+ ...+..+...+.+.|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 346667777777765544 68888888887 56664 4567777778888999999999999999999884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.05 Score=45.23 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-----C----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-----P----VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
-.|+..+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34455555555555555555443 0 112456888899999999999999999999999999997665444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.28 Score=44.59 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
+....+|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 4677899999999999999999999987654 4455555666777766554
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+-+.... .| -++.....+.-.|+++++.+++.+.+.-|.... ..+.+|-.+.|.++.+++
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 4443332 11 344555566678999999999888764332221 123467777777776554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.44 Score=56.14 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=67.4
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
+....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 4456788999998887766 3567889999999999999999998887754 3344444555666655444
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP 636 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 636 (844)
+-+.... .| .++.-..+|.+.|++++|++++.+++
T Consensus 729 ~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 729 LAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4433333 11 23334455666666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.04 Score=48.78 Aligned_cols=73 Identities=11% Similarity=0.020 Sum_probs=45.9
Q ss_pred CcchHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 608 QIVHYGCMVDLLGRAG---LLGEALDLIKSM-PVE-P--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 608 ~~~~~~~li~~~~~~g---~~~eA~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
+..+.-.+..++.++. +.+++..++++. ... | +...+..|.-+|.+.|++++|.+.++++++++|+|..+...
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3334444444444444 333444444443 111 3 23456667778899999999999999999999998644443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.38 Score=56.69 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=55.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHH
Q 003148 283 MYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMC 362 (844)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 362 (844)
.+..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3445677777777765553 335677777777777777777777776643 22333333334444443333
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 003148 363 HGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMS 402 (844)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 402 (844)
-......|. ++.-...|.++|++++|.+++.++.
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 333333221 1233344555666666666555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.13 Score=43.83 Aligned_cols=65 Identities=6% Similarity=-0.087 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 639 PNDVIWGSLLAACQKHQNVD---IAAYAAERITELD-P-EKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|+..+-..+..++.+..+.. +|+.+++.++..+ | ..-.....|+-.+.+.|++++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444445555555544333 3666666666554 3 2223455666666677777777776666655
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.054 Score=53.46 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHhcCCCCH--hHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhc
Q 003148 520 CGDPQRAMQVFRRMEKRDV--SAWTAAIGA-MAME--GN------GEQAVELFNEMLRQGIKPD---SIVFVGVLTACSH 585 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 585 (844)
.|+..+-.+.+.++.+.++ ..|..++.+ ++.. |. ..+|..++++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444455555555554443 357666543 3332 32 3566677777777 6776 2466666666666
Q ss_pred -----cCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhc-CChHHHHHHHHhC
Q 003148 586 -----GGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRA-GLLGEALDLIKSM 635 (844)
Q Consensus 586 -----~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~-g~~~eA~~~~~~m 635 (844)
-|+.++|.++|++..+ +.|+ ..++..+.+.|++. |+.++|.+++++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3777777777777766 5552 55555566666653 6666666666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.51 Score=40.80 Aligned_cols=67 Identities=9% Similarity=-0.058 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 638 EPNDVIWGSLLAACQKHQ---NVDIAAYAAERITELDPEKS-GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 638 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|+..+--.+..++.+.. +..+|+.+++.++..+|.+. .....|+-.|.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555555655544 45577778888887777433 34567777788888888888888877764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.13 E-value=2.1 Score=38.78 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=66.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHH
Q 003148 282 DMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRM 361 (844)
Q Consensus 282 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 361 (844)
+....+|+++.|.++.+++ .+...|..+.....+.|+++-|.+.|.+..+ |..++-.+...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887766 3456788888888888888888888887643 3344444445566555444
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 003148 362 CHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN 403 (844)
Q Consensus 362 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 403 (844)
+-......|- ++.-...+.-.|+++++.++|.+...
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4443333331 24444556667777777777766554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.19 Score=57.41 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
..-|...|+++.|+.+++++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456778999999999999999999999999999999999999999999998884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.49 Score=39.00 Aligned_cols=65 Identities=12% Similarity=-0.065 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELD-------PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+..-...+...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678888999999999999999999843 233457889999999999999999999988764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.71 E-value=0.88 Score=38.63 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
....|.-++.+.|+++.|.+..+.+++.+|+|..+..+
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34456668899999999999999999999998655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.48 E-value=0.72 Score=39.34 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 639 PNDVIWGSLLAACQKHQ---NVDIAAYAAERITELDPEK-SGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|...+--.+..++.+.. +..+|+.+++.++..+|.. -..+..|+-.+.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444433 4456667777777666632 33455666677777777777777776665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=23 Score=39.51 Aligned_cols=288 Identities=10% Similarity=0.009 Sum_probs=144.6
Q ss_pred HHHHHHHHhC-CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 003148 361 MCHGYVLRNG-LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHIS 439 (844)
Q Consensus 361 ~i~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 439 (844)
++-..+.+.. .+....+-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+--.
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~---- 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT---- 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----
Confidence 3444444432 233334445666677778888888776666 3334444445566667777765554433322100
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCc-hhHHhHHhhhHH
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCD-MQLATALVDMFA 518 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~ 518 (844)
.....+..-.+|..+.+.|...+...+.-+.. ....++...+..+...+ .++ ......++..+.
T Consensus 132 ---------~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~-al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~ 196 (618)
T 1qsa_A 132 ---------GKSQPNACDKLFSVWRASGKQDPLAYLERIRL-AMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN 196 (618)
T ss_dssp ---------SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH-HHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH
T ss_pred ---------CCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh
Confidence 00122334445555555443322222222211 22234444444443322 222 223344444444
Q ss_pred hcCCHHHHHHHHHhcCCCCHhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH----HHHHHHHHhccCcHHH
Q 003148 519 RCGDPQRAMQVFRRMEKRDVSA---WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV----FVGVLTACSHGGLVNQ 591 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~ 591 (844)
+-..+ ....... .++... ...-+.-+++ .+.+.|..++....+.+ ..+... ...+.......+...+
T Consensus 197 ~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~ 270 (618)
T 1qsa_A 197 NPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDE 270 (618)
T ss_dssp CGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHH
T ss_pred ChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChH
Confidence 33333 2232222 222211 1112223333 37899999999887643 223322 2233334444553556
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 003148 592 GWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGS-LLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
+...+..... ..++.....-.+..-.+.|+++.|...|+.|+..+ +..-|.- +..+....|+.++|...++++.+
T Consensus 271 ~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 271 QAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6667766544 22332223334444557899999999999996443 3233332 33466778999999999999975
Q ss_pred cCCCCCchHHHH
Q 003148 670 LDPEKSGVHVLL 681 (844)
Q Consensus 670 ~~p~~~~~~~~l 681 (844)
+ ..+|-.|
T Consensus 348 --~--~~fYg~l 355 (618)
T 1qsa_A 348 --Q--RGFYPMV 355 (618)
T ss_dssp --S--CSHHHHH
T ss_pred --C--CChHHHH
Confidence 3 2456555
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.75 E-value=1.2 Score=38.95 Aligned_cols=107 Identities=10% Similarity=0.098 Sum_probs=65.3
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCh-h---HHHHHHHHHhccCcHHHHHHHHHHhHhhcC
Q 003148 535 KRDVSAWTAAIGAMAMEGNG------EQAVELFNEMLRQGIKPDS-I---VFVGVLTACSHGGLVNQGWHLFRSMTDIHG 604 (844)
Q Consensus 535 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~-~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 604 (844)
..|..+|-..+....+.|++ ++.+++|++.... ++|+. . .|..+.--|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 55677777777777777777 6666666666653 44442 1 1111111110
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 605 VSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PV-EPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 605 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.+...++.++|.++|+.+ .. +--..+|-....--.++|++..|.+++.+++.+.|.+.
T Consensus 69 -------------~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 69 -------------ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -------------HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -------------HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 112235566666666655 11 11266787777777789999999999999999988753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=87.50 E-value=13 Score=31.81 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=53.5
Q ss_pred HhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
.+||++......+-.+.. +..-....+......|+-++-.+++..+.. ..+|+......+.+||.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 356666666666555532 233344456667777777777777777533 256677777777778888888888888777
Q ss_pred HhHh
Q 003148 598 SMTD 601 (844)
Q Consensus 598 ~m~~ 601 (844)
++-+
T Consensus 150 ~AC~ 153 (172)
T 1wy6_A 150 EACK 153 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.28 E-value=1.2 Score=38.92 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.+|.++|..+|+.++.+...-+..|...+.--.+.|+.+.|++++.+....+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37999999999999988555556777777778899999999999999887653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.15 E-value=58 Score=38.04 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=70.6
Q ss_pred cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH--hcCCHHHHHHHHHhcC-CCC-HhHHHH---HHHHHHhcCChH
Q 003148 483 GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA--RCGDPQRAMQVFRRME-KRD-VSAWTA---AIGAMAMEGNGE 555 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--k~g~~~~A~~~~~~~~-~~~-~~~~~~---li~~~~~~g~~~ 555 (844)
...|+.+....++..+.+.. +..+...++-+.+ -.|+.+.+..+.+.+. ..| .+-|.+ +.-+|+-.|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 34456666666666555432 2222222333332 4466666665555544 223 223332 334556666766
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHH-HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDS-IVFVGVL-TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL-GEALDLI 632 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~-~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~eA~~~~ 632 (844)
...++++.+.+. ++. +--.+++ -+....|..+.+.++++.+.+ + ..|.+..-.++.-+..-.|.. .+|.+.+
T Consensus 578 aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~-~-~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 578 AVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK-S-HNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG-C-SCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 555677777652 222 2111222 133334544445555554443 2 233333333333333334432 5666676
Q ss_pred HhCCCCCChHHH
Q 003148 633 KSMPVEPNDVIW 644 (844)
Q Consensus 633 ~~m~~~p~~~~~ 644 (844)
..+.-.+|..+-
T Consensus 653 ~~L~~D~d~~Vr 664 (963)
T 4ady_A 653 DPLTKDPVDFVR 664 (963)
T ss_dssp HHHHTCSSHHHH
T ss_pred HHHccCCCHHHH
Confidence 666444554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.38 E-value=40 Score=33.97 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHH----HHHHhcCCCCChhhHHHHHHHHh
Q 003148 276 MVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAIL----DEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 276 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566778899999999998643 234566778877766655 44456788899888777777776
Q ss_pred hcCChh-----hHHHHHHHHHHhC--CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 003148 352 QLGDLL-----CGRMCHGYVLRNG--LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNG 420 (844)
Q Consensus 352 ~~~~~~-----~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 420 (844)
....-+ -..+...+-.+.| -..|+.....+...|.+.+++.+|+.-|-.-.++.+..+..++--+.+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 554322 1222333334444 34577788889999999999999999885322233356655555444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.54 E-value=44 Score=33.73 Aligned_cols=126 Identities=13% Similarity=0.045 Sum_probs=68.9
Q ss_pred HHHHhCCcccChhhHHhHHHHccccCc-----hHHHHHHHHHHHHhC--CCCchhHHhHHhhhHHhcCCHHHHHHHHHhc
Q 003148 461 RVMLSERIKVDRVTMVGVASACGYLGA-----LDLAKWIYAYIEKNG--IHCDMQLATALVDMFARCGDPQRAMQVFRRM 533 (844)
Q Consensus 461 ~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 533 (844)
+-..+.++++|..+...++..+..... ..-..+....-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 444445666666665555555544332 111222233334444 3447778888999999999999999988432
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 534 EKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 534 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.++....+..|+.-+.+.+...++ |...-.+++ -|.-.+++..|...++...+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 222235665555544443322111 111222223 34456788888887766654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.28 E-value=6.3 Score=44.95 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=40.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
+...|+++-|+++.++... ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4557888888888888887 77776 68888888888888888888888776
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.19 E-value=13 Score=32.11 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 607 PQIVHYGCMVDLLGRAGLLG---EALDLIKSM-PVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~~~---eA~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
|+..+--.+..++.++...+ +++.++++. ...| ......-|.-++.+.|++++|.+..+.+++.+|+|..+-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 33333334444455544332 344444443 1123 122444566689999999999999999999999986443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.60 E-value=7.1 Score=33.27 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 607 PQIVHYGCMVDLLGRAGLL---GEALDLIKSM-PVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~~---~eA~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
|+..+--.+..++.++... .+++.++++. ...| ....+--|.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3333333444455555433 2344444443 1123 233556667788899999999999999999999885443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.18 E-value=33 Score=35.70 Aligned_cols=157 Identities=8% Similarity=0.021 Sum_probs=73.5
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCChhHHH----
Q 003148 511 TALVDMFARCGDPQRAMQVFRRMEK--------RDVSAWTAAIGAMAME-GNGEQAVELFNEMLRQGIKPDSIVFV---- 577 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~---- 577 (844)
..|.+.|.+.|+.++..+++..... +....-..|+..+... +..+.-.++..+.++-. +-+..+|.
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455666666666666666655431 1122344455555442 22333333433333210 01112231
Q ss_pred --HHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-----CCCCChHHHHH
Q 003148 578 --GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-----PVEPNDVIWGS 646 (844)
Q Consensus 578 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-----~~~p~~~~~~~ 646 (844)
-++..|...|++.+|.+++..+.+...-..| .+.|..-+.+|...|++.++...+.+. .+.|++.+-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 3455666666666666666666553222111 334555556666666666666666544 12123322111
Q ss_pred H---HH-HHH-hcCCHHHHHHHHHHHH
Q 003148 647 L---LA-ACQ-KHQNVDIAAYAAERIT 668 (844)
Q Consensus 647 l---l~-~~~-~~g~~~~a~~~~~~~~ 668 (844)
+ .+ .+. ..+++..|...|-+++
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 11 233 4566666666555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 844 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1qdla_ | 422 | d.161.1.1 (A:) Anthranilate synthase aminodeoxyiso | 5e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 3e-05
Identities = 45/419 (10%), Positives = 109/419 (26%), Gaps = 45/419 (10%)
Query: 280 LVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGP 336
L + G + A++ + + N + + S + + + + P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 337 RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACR 396
A + LG++ R + + + + A
Sbjct: 65 L--------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116
Query: 397 IFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEA 456
+ + + D + LG L + E
Sbjct: 117 MEGAVQAYVSALQYN-----------------------PDLYCVRSDLGNLLKALGRLEE 153
Query: 457 MELFRVMLSERIKVDRVTMVGVASACGYLGALDLA-KWIYAYIEKNGIHCDMQLATALVD 515
+ + E V + G + LA + + D + L +
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN--LGN 211
Query: 516 MFARCGDPQRAMQVFRRMEKRDVSAWTA--AIGAMAME-GNGEQAVELFNEMLRQGIKPD 572
+ RA+ + R + + + E G + A++ + + ++P
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH 269
Query: 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLI 632
L A + + T + + ++ G + EA+ L
Sbjct: 270 FPDAYCNL-ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 633 -KSMPVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689
K++ V P +L + Q+ + A + + P + + + N
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 41/324 (12%), Positives = 93/324 (28%), Gaps = 16/324 (4%)
Query: 379 NTMIDMYMKCGKQEMACRIFDH---MSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGR 435
+ ++ +C + + + + ++++L G + + +
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL--GNVYKERGQLQEAIEHYRHAL 94
Query: 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIY 495
+ V + V S G L
Sbjct: 95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
Query: 496 AYIEKNGIHCDMQLATA---LVDMFARCGDPQRAMQVFRR---MEKRDVSAWTAAIGAMA 549
I A A L +F G+ A+ F + ++ + A+ +
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI 609
++AV + L ++V + GL++ +R ++ P
Sbjct: 215 EARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Query: 610 VHYGCMVDLLGRAGLLGEALDLIK--SMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERI 667
Y + + L G + EA D + +L ++ N++ A +
Sbjct: 274 --YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331
Query: 668 TELDPEKSGVHVLLSNIYASAGKW 691
E+ PE + H L+++ GK
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKL 355
|
| >d1qdla_ d.161.1.1 (A:) Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 422 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ADC synthase superfamily: ADC synthase family: ADC synthase domain: Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 41.1 bits (95), Expect = 5e-04
Identities = 23/203 (11%), Positives = 55/203 (27%), Gaps = 5/203 (2%)
Query: 361 MCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNG 420
+ I + ++ ++ S L +
Sbjct: 173 RSGYIFQVVLSRFYRYIFSGDPLRIYYNLRRINPSPYMFYLKFDEKYLIGSSPELLFRVQ 232
Query: 421 DVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVAS 480
D + R + L N ++ E ++ R + +V + G
Sbjct: 233 DNIVETYPIAGTRPRGADQEEDLKLELELMNSEKDKAEHLMLVDLARNDLGKVCVPGTVK 292
Query: 481 ACGYLGALDLAKWIYAYI----EKNGIHCDMQLATALVDMFARCGDP-QRAMQVFRRMEK 535
+ + + + + + +A G P AM + +E+
Sbjct: 293 VPELMYVEKYSHVQHIVSKVIGTLKKKYNALNVLSATFPAGTVSGAPKPMAMNIIETLEE 352
Query: 536 RDVSAWTAAIGAMAMEGNGEQAV 558
+ A+G ++ +GN E A+
Sbjct: 353 YKRGPYAGAVGFISADGNAEFAI 375
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 844 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.96 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.77 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.71 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.51 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.04 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.89 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.88 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.71 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.54 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.47 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.36 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.27 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.1 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.82 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.57 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.57 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.88 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.59 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.5 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.4e-19 Score=190.82 Aligned_cols=368 Identities=13% Similarity=0.117 Sum_probs=257.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 003148 280 LVDMYMKCGAVDTAKQLFGECKD--R-NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDL 356 (844)
Q Consensus 280 Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 356 (844)
+...+.+.|++++|.+.|+++.+ | +..+|..+...|.+.|++++|+..|++.++.. |+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~----------------- 65 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL----------------- 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------
Confidence 34455666777777776666543 2 34556666666666677777776666665542 22
Q ss_pred hhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003148 357 LCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMP 433 (844)
Q Consensus 357 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (844)
+...+..+...|.+.|++++|...+....+ .+...+..........+....+........
T Consensus 66 -----------------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 66 -----------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp -----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 223344555555556666666655555443 122222223333333333332222222111
Q ss_pred ---CCCccccccccccccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhH
Q 003148 434 ---GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQL 509 (844)
Q Consensus 434 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 509 (844)
......+..........+....+...+.+.... .|+ ...+..+...+...+..+.|...+..+.+.. +.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T d1w3ba_ 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ccccccccccccccccccccchhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHH
Confidence 122333333444455566667777776666543 343 3455555666777888888888888877764 335667
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSH 585 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 585 (844)
+..+...|...|++++|...|+... ..+...|..+...+.+.|++++|+..|++.++ +.|+. .++..+..++..
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 8888899999999999999998766 45677888899999999999999999999998 67876 678888889999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYA 663 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 663 (844)
.|++++|.+.++..... .+.+...+..+...|.+.|++++|++.+++. ...|+ ..+|..+...+...|++++|+..
T Consensus 284 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998772 2344677888999999999999999999986 66775 56888899999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 664 AERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
++++++++|+++.+|..|+++|.+.|+
T Consensus 362 ~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1e-18 Score=187.06 Aligned_cols=351 Identities=14% Similarity=0.132 Sum_probs=272.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCC
Q 003148 311 IMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGK 390 (844)
Q Consensus 311 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 390 (844)
+...+.+.|++++|++.|+++.+. .|+ ++.++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~~~~~~ 48 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPD----------------------------------NTGVLLLLSSIHFQCRR 48 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHHHHHHcCC
Confidence 345566777777777777777664 233 33445677888899999
Q ss_pred HHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccccccccccccccCChHHHHHHHHHHH
Q 003148 391 QEMACRIFDHMSN--K-TVVSWNSLIAGLIKNGDVESAREVFSEMPGRD---HISWNTMLGGLTQENMFEEAMELFRVML 464 (844)
Q Consensus 391 ~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~ 464 (844)
+++|...|++..+ | +..+|..+...|.+.|++++|.+.+......+ ...+..........+....+........
T Consensus 49 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998754 3 56789999999999999999999998776532 2233333344444555555555555544
Q ss_pred hCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHH
Q 003148 465 SERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAW 541 (844)
Q Consensus 465 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~ 541 (844)
..... ...............+....+........... +.+...+..+...+...|+.++|...++... ..+...|
T Consensus 129 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 206 (388)
T d1w3ba_ 129 QYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206 (388)
T ss_dssp HHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccccc-cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHH
Confidence 43222 22333334444455566667777766666554 3356677788899999999999999998765 4467789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLL 619 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 619 (844)
..+...+...|++++|+..+++... ..|+. ..+..+..++...|++++|...|+++.+ +.|+ ...|..+...|
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHH--HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988 44544 6777888899999999999999999988 5566 67888999999
Q ss_pred HhcCChHHHHHHHHhC-C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH
Q 003148 620 GRAGLLGEALDLIKSM-P-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARV 697 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 697 (844)
...|++++|++.++.. . .+.+...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.
T Consensus 282 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987 3 3346778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 003148 698 RLQMKEQ 704 (844)
Q Consensus 698 ~~~m~~~ 704 (844)
+++..+.
T Consensus 362 ~~~al~l 368 (388)
T d1w3ba_ 362 YKEAIRI 368 (388)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.5e-13 Score=139.04 Aligned_cols=216 Identities=19% Similarity=0.153 Sum_probs=158.9
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFN 562 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 562 (844)
|++++|...++.+++.. +.+...+..+...|...|++++|...|++.. ..+...|..+...|...|++++|++.++
T Consensus 33 g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 111 (323)
T d1fcha_ 33 GDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 111 (323)
T ss_dssp TCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence 34444444444333332 2234555666677777777777777776654 3456677777777788888888888888
Q ss_pred HHHHCCCCCChhHH----------------HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChH
Q 003148 563 EMLRQGIKPDSIVF----------------VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLG 626 (844)
Q Consensus 563 ~m~~~g~~p~~~t~----------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 626 (844)
+... ..|+...+ ...+..+...+..+++.+.|.++.+...-.++...+..+...+.+.|+++
T Consensus 112 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 189 (323)
T d1fcha_ 112 DWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189 (323)
T ss_dssp HHHH--TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred hHHH--hccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHh
Confidence 7776 44442111 11122334456788899999888773333344667888999999999999
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|++.+++. ...| +..+|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 190 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999987 4555 46689999999999999999999999999999999999999999999999999999999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.5e-12 Score=134.87 Aligned_cols=244 Identities=14% Similarity=0.078 Sum_probs=166.1
Q ss_pred cccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHH
Q 003148 446 GLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQ 524 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 524 (844)
.+.+.|++++|+..|+++.+. .|+ ..++..+..++...|+++.|...+..+++.. +.+...+..+...|...|+++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence 345555556666666555543 232 3344445555555566666666665555543 224455555666666667777
Q ss_pred HHHHHHHhcCC--CC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhHHHHHHHHH
Q 003148 525 RAMQVFRRMEK--RD----------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD---SIVFVGVLTAC 583 (844)
Q Consensus 525 ~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~ 583 (844)
+|.+.++.... ++ .......+..+...+...+|.+.|.+.++ ..|+ ...+..+...+
T Consensus 105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHH
T ss_pred ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH--HhhcccccccchhhHHHH
Confidence 76666665431 11 01111123334455678889999999887 4444 45677888889
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 660 (844)
...|++++|...|++..+ ..|+ ...|..+...|.+.|++++|.+.++++ ...|+ ..+|..+..+|...|++++|
T Consensus 183 ~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999987 4455 678889999999999999999999987 55664 66899999999999999999
Q ss_pred HHHHHHHHhcCCCCCch-----------HHHHHHHHHHcCCchHHHHH
Q 003148 661 AYAAERITELDPEKSGV-----------HVLLSNIYASAGKWTNVARV 697 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~~ 697 (844)
+..++++++++|++... +..+..++...|+++.+...
T Consensus 260 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999987653 34566677777777765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8.2e-10 Score=112.96 Aligned_cols=191 Identities=9% Similarity=0.136 Sum_probs=138.9
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHH
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEG-NGEQAVELFNEMLRQGIKPDS-IVFVGVLTA 582 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a 582 (844)
..++-+...+.+.+..++|+++++.+. ..+...|+.....+...| ++++|+..+++.++ +.|+. .+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHH
Confidence 344555566777788888888887766 345667887777777765 47888888888887 67765 577777778
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC---
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN--- 656 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--- 656 (844)
+...|++++|+++++++.+ +.|+ ...|..++.++.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 8888888888888888877 5555 667778888888888888888888877 5555 45577766655554433
Q ss_pred ---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 657 ---VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 657 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++|...+.++++++|++...+..++.++...| .+++.+.++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 567888888888888888888888877766544 46677777666553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=8.2e-09 Score=105.34 Aligned_cols=213 Identities=10% Similarity=0.084 Sum_probs=161.5
Q ss_pred ccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC-CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHH
Q 003148 482 CGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG-DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQA 557 (844)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 557 (844)
+.+.+..++|.+++..+++.. +.+...|+.....+.+.| ++++|...++... ..+..+|+.+...+...|++++|
T Consensus 53 ~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eA 131 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 131 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHH
Confidence 344556677777777777764 335567777777777766 5899999998775 55788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC------hHHHH
Q 003148 558 VELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGL------LGEAL 629 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~------~~eA~ 629 (844)
++.++++++ +.|+. ..|..+...+.+.|++++|++.++.+.+ +.|+ ...|+.+..++.+.|. +++|+
T Consensus 132 l~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai 206 (315)
T d2h6fa1 132 LEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 206 (315)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence 999999999 77875 7888899999999999999999999988 5665 6677777777777665 57888
Q ss_pred HHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHHc--CCchHHHHHHHHH
Q 003148 630 DLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV--HVLLSNIYASA--GKWTNVARVRLQM 701 (844)
Q Consensus 630 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~--g~~~~a~~~~~~m 701 (844)
+.++++ ...| +...|..+...+... ..+++...+++++++.|+.... +..++.+|... +..+.+...+++.
T Consensus 207 ~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 207 QYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888776 5556 577888887766544 4688999999999998876544 45677777543 4545555444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=4.2e-08 Score=101.61 Aligned_cols=255 Identities=13% Similarity=0.048 Sum_probs=169.8
Q ss_pred ccccCChHHHHHHHHHHHhCCcccCh------hhHHhHHHHccccCchHHHHHHHHHHHHhC----CC-CchhHHhHHhh
Q 003148 447 LTQENMFEEAMELFRVMLSERIKVDR------VTMVGVASACGYLGALDLAKWIYAYIEKNG----IH-CDMQLATALVD 515 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~~-~~~~~~~~li~ 515 (844)
+...|++++|++++++..+.. |+. ..+..+..++...|++++|...+..+.+.. .. .....+..+..
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 445566666666666555431 211 123334445555666666666665554321 11 11234455666
Q ss_pred hHHhcCCHHHHHHHHHhcC-------CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhHHHHHH
Q 003148 516 MFARCGDPQRAMQVFRRME-------KRD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD----SIVFVGVL 580 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll 580 (844)
.|...|++..|...+.... .+. ...+..+...+...|+.+.+...+.+........+ ..++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 7788888888888776543 111 13455667788889999999999998887432222 23455556
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----ChHHHHHHHH
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQ-----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-----NDVIWGSLLA 649 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-----~~~~~~~ll~ 649 (844)
..+...|...++...+........-... ...+..+...+...|+.++|.+.+++. ...| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6777889999999888877663322222 234556677888999999999999987 3222 1335666778
Q ss_pred HHHhcCCHHHHHHHHHHHHh------cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 650 ACQKHQNVDIAAYAAERITE------LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
++...|+.++|...+++++. ..|.....+..++.+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999874 3455566888999999999999999999988765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=4.1e-09 Score=104.41 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=112.2
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHh
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACS 584 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 584 (844)
++..+...|.+.|++++|...|++.. +.+..+|+.+..+|.+.|++++|++.|+++++ +.|+. .++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHHH
Confidence 44455667777777777777777655 34567777777777777888888888877777 56654 46667777777
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHH----hcCCHH
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQ----KHQNVD 658 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~----~~g~~~ 658 (844)
..|++++|...|+...+ ..|+ ......+...+.+.+..+.+..+.... ...++...|..+ ..+. ..+..+
T Consensus 117 ~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV-EFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHH-HHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHH-HHHHHHHHHHHHHH
Confidence 77778888777777766 3343 223333333444445444444433332 112222222211 1111 112233
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+...+.......|+...+|..|+.+|...|++++|.+.+++..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3333444444455555566777788888888888888888777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=4.1e-10 Score=116.77 Aligned_cols=278 Identities=8% Similarity=-0.054 Sum_probs=188.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHH
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSN--KTV-VSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEE 455 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 455 (844)
..++....+.+..++|+.+++...+ |+. ..|+..-..+... ..+...+...|++++
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l---------------------~~~~~~~~~~~~~~~ 91 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHL---------------------ETEKSPEESAALVKA 91 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------------------HTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH---------------------hhhcchHHHHHHHHH
Confidence 3444444444445788888887654 332 3344332222111 112223455667788
Q ss_pred HHHHHHHHHhCCcccCh-hhHHhHHHHccc--cCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHh
Q 003148 456 AMELFRVMLSERIKVDR-VTMVGVASACGY--LGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRR 532 (844)
Q Consensus 456 A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 532 (844)
|+.++++..+. .|+. ..+.....++.. .++.+.+...+..+.+.........+..+...+...|..++|...++.
T Consensus 92 al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~ 169 (334)
T d1dcea1 92 ELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (334)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHH
Confidence 88888888764 4533 334444334333 345788888888887775433333334455677788999999999998
Q ss_pred cCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCc
Q 003148 533 MEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI 609 (844)
Q Consensus 533 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 609 (844)
... .+..+|+.+...+.+.|++++|...+++..+ +.|+... +...+...+..+++...+..... .-.+..
T Consensus 170 ~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~ 242 (334)
T d1dcea1 170 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLL--GRAEPL 242 (334)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHH--SCCCCS
T ss_pred HHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHH--hCcchh
Confidence 873 4678899999999999999988777666555 3343322 22334455666778888887766 122335
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
..+..++..+...|+.++|.+.+.+. ...|+ ..+|..+...+...|+.++|...++++++++|++..+|..|+..+.
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 56667788888999999999999887 66664 5588888889999999999999999999999998888888877765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=6.9e-08 Score=98.15 Aligned_cols=185 Identities=13% Similarity=0.060 Sum_probs=133.9
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 003148 487 ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK---RD-VSAWTAAIGAMAMEGNGEQAVELFN 562 (844)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~ 562 (844)
..+.+..+++..++...+.+..++...+..+.+.|+++.|..+|+++.+ .+ ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4567777888777665555667777788888888888888888887652 23 3468888888888888888888888
Q ss_pred HHHHCCCCCCh-hHHHHHHH-HHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----C
Q 003148 563 EMLRQGIKPDS-IVFVGVLT-ACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----P 636 (844)
Q Consensus 563 ~m~~~g~~p~~-~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~ 636 (844)
++++. .|+. ..|..... -+...|+.+.|..+|+.+.+.+ +.+...|...++.+.+.|+.++|..+|++. +
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 88873 4433 33333333 2345678888888888888732 233567788888888888888888888876 3
Q ss_pred CCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 637 VEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 637 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..|+ ...|...+..-..+|+.+.+..+.+++.++-|++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4443 34788888877888888888888888888777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=5.4e-08 Score=96.05 Aligned_cols=228 Identities=11% Similarity=-0.058 Sum_probs=156.8
Q ss_pred cccccccCChHHHHHHHHHHHhCCc-cc--ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhc
Q 003148 444 LGGLTQENMFEEAMELFRVMLSERI-KV--DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARC 520 (844)
Q Consensus 444 i~~~~~~g~~~~A~~l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 520 (844)
...+....+.+.|+.-+++...... .+ ...++..+-.++.+.|++++|...+...++.. +.++.+++.+..+|.+.
T Consensus 6 ~~~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~ 84 (259)
T d1xnfa_ 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 84 (259)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred hhcccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHH
Confidence 3444555667788888888776422 12 12355555667788999999999999998875 34678899999999999
Q ss_pred CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHH
Q 003148 521 GDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 521 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
|++++|.+.|+++. +.+..+|..+...|...|++++|++.|++.++ ..|+. .....+..++...+..+....+.
T Consensus 85 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
T d1xnfa_ 85 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLK 162 (259)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999887 34567899999999999999999999999998 56654 33333344455556555555555
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCC----hHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRAGL----LGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~g~----~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
..... ..+....++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...++++++.
T Consensus 163 ~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 163 QHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55544 333333332 2333322222 22222222221 12233 346777888899999999999999999999
Q ss_pred CCCCCchH
Q 003148 671 DPEKSGVH 678 (844)
Q Consensus 671 ~p~~~~~~ 678 (844)
+|++...|
T Consensus 239 ~p~~~~~~ 246 (259)
T d1xnfa_ 239 NVHNFVEH 246 (259)
T ss_dssp CCTTCHHH
T ss_pred CCCCHHHH
Confidence 99886544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=1e-07 Score=98.62 Aligned_cols=289 Identities=9% Similarity=-0.057 Sum_probs=173.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC--CC------cchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccc
Q 003148 378 CNTMIDMYMKCGKQEMACRIFDHMSN--KT------VVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ 449 (844)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 449 (844)
.......+...|++++|...+++..+ |+ ...++.+...|...|++++|...|
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~-------------------- 74 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM-------------------- 74 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH--------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHH--------------------
Confidence 34445667788888888888876532 21 123444445555555555555544
Q ss_pred cCChHHHHHHHHHHHhCC----ccc-ChhhHHhHHHHccccCchHHHHHHHHHHHH----hCCCC---chhHHhHHhhhH
Q 003148 450 ENMFEEAMELFRVMLSER----IKV-DRVTMVGVASACGYLGALDLAKWIYAYIEK----NGIHC---DMQLATALVDMF 517 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~~---~~~~~~~li~~y 517 (844)
++..+.. ..+ ...++..+...+...|++..+...+..... .+... ....+..+...|
T Consensus 75 -----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 143 (366)
T d1hz4a_ 75 -----------QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 143 (366)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHH
Confidence 4433211 001 011222333344455566666555544332 11111 123445566778
Q ss_pred HhcCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCh----hHHHHHHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEK--------RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQG--IKPDS----IVFVGVLTAC 583 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~----~t~~~ll~a~ 583 (844)
...|+++.|...+..... .....+..+...+...|+..++...+.+..... ..... ..+..+...+
T Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T d1hz4a_ 144 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 223 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 888888888888876541 123445556667778888888888887765421 11111 2345556677
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hHHHHHHHHHHHh
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-------PVEPN-DVIWGSLLAACQK 653 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~ 653 (844)
...|+.++|...++...+...-.+. ...+..+...|...|++++|.+.++++ +..|+ ..+|..+...+..
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 303 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 7889999999999887652211111 234556788899999999999988875 34443 3467778888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC---------chHHHHHHHHHHcCCchHHHHH
Q 003148 654 HQNVDIAAYAAERITELDPEKS---------GVHVLLSNIYASAGKWTNVARV 697 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~a~~~ 697 (844)
.|+.++|...+++++++.+... .....+...+...++.+++.+-
T Consensus 304 ~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 304 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999999999988654321 1223344445666777776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=5.5e-07 Score=91.25 Aligned_cols=182 Identities=9% Similarity=0.038 Sum_probs=145.2
Q ss_pred HhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHH
Q 003148 518 ARCGDPQRAMQVFRRME----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQ 591 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 591 (844)
...+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++++ ..|.. ..|...+..+.+.|..++
T Consensus 75 ~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (308)
T d2onda1 75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred hcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHH
Confidence 34456788888988754 44667899999999999999999999999998 55543 468888999999999999
Q ss_pred HHHHHHHhHhhcCCCCC-cchHHHHHHHH-HhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQ-IVHYGCMVDLL-GRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~-~~~~~~li~~~-~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
|+++|+++.+ ..|. ...|...+... ...|+.+.|..+|+++ ...| +...|..++......|+++.|+.+++++
T Consensus 153 ar~i~~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 153 GRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999987 3343 44555555443 3468999999999988 3334 5679999999999999999999999999
Q ss_pred HhcCCCCCc----hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 668 TELDPEKSG----VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 668 ~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|.++. .|......-...|+.+.+.++.+++.+.
T Consensus 230 i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998776543 5666666667889999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=1.9e-09 Score=111.67 Aligned_cols=243 Identities=8% Similarity=-0.092 Sum_probs=169.0
Q ss_pred CChHHHHHHHHHHHhCCcccChhhH----HhHHHHc-------cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh
Q 003148 451 NMFEEAMELFRVMLSERIKVDRVTM----VGVASAC-------GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~~t~----~~ll~a~-------~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 519 (844)
+..++|++++++..+ ..|+..+. ..++... ...+.++++...+..+.+.. +.+...+..+...+..
T Consensus 43 ~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 344788888888776 45765543 1122222 22345677777777777765 3345555555555555
Q ss_pred cC--CHHHHHHHHHhcC---CCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHH
Q 003148 520 CG--DPQRAMQVFRRME---KRDVSAWTAA-IGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 520 ~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 592 (844)
.+ +.++|...++++. .++...|... ...+...|..++|+..++++++ ..|+. ..|..+..++...|++++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHHHH
Confidence 44 5788888888765 3456666544 4566678888889988888887 66665 5677777788888887777
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 593 WHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
...++...+ +.|+ ...+...+...+..++|...+.+. ...++...+..+...+...|+.++|...+.++++.
T Consensus 198 ~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 665555444 2222 122334456667777777777665 22334556667777788889999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 671 DPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 671 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.4e-07 Score=79.91 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
-++.+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 345667777777777777776 4444 45577777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 003148 693 NVARVRLQMKEQ 704 (844)
Q Consensus 693 ~a~~~~~~m~~~ 704 (844)
+|.+.+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=5.5e-07 Score=83.81 Aligned_cols=139 Identities=9% Similarity=-0.007 Sum_probs=104.6
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHH
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 592 (844)
...+...|+++.|.+.|.++.+++...|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 44567889999999999999888989999999999999999999999999998 77876 6788888899999999999
Q ss_pred HHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 593 WHLFRSMTDIHGVSPQIV-HYGCMVDLLGRAGLLGEALDLIKSMPVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
...|++..+. .+.+.. .| ...| ...+++ ..++..+..++...|++++|.+.+++++++
T Consensus 90 ~~~~~kAl~~--~~~n~~~~~-------~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLIDY-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHT--TTTCSEEEC-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CccCchHHH-------HHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988761 111110 00 0000 011111 235556677788888888888888888888
Q ss_pred CCCC
Q 003148 671 DPEK 674 (844)
Q Consensus 671 ~p~~ 674 (844)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.9e-07 Score=79.03 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=85.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
-...+...|++++|+..|++..+ ..|+ ...|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 34566777888888888888877 4455 667888888888888888888888887 4445 5678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
++++|+..++++++++|+++.++..+.++-+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988888877654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=1.4e-07 Score=88.88 Aligned_cols=104 Identities=13% Similarity=-0.049 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHH
Q 003148 571 PDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSL 647 (844)
Q Consensus 571 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~l 647 (844)
|+...+......+...|++++|+..|+++.+ +.|+ ...|..+..+|.+.|++++|++.|+++ .+.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 4444555555566666666666666665555 2333 444555555555555555555555554 44443 3355555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
..++...|++++|+..++++++++|++...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 555555555555555555555555544433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=9.5e-07 Score=82.15 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=74.7
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 660 (844)
+...|++++|++.|..+. +|+...|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 344455555555554321 233444555555555666666666665555 3344 345666666677777777777
Q ss_pred HHHHHHHHhcCCCCC----------------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 661 AYAAERITELDPEKS----------------GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...++++++..|.+. .++..++.+|...|++++|.+.++...+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777776554432 34668899999999999999999887764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=7.5e-07 Score=80.13 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=71.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
....|.+.|++++|++.|++. .+.| +...|..+...+...|++++|...++++++++|+++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 355677888888888888877 4455 45678888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 003148 693 NVARVRLQMKEQ 704 (844)
Q Consensus 693 ~a~~~~~~m~~~ 704 (844)
+|.+.+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888877654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.39 E-value=3.2e-07 Score=76.89 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
+-.++..+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 344677888999999999999987 5566 57799999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHH
Q 003148 690 KWTNVARVRLQM 701 (844)
Q Consensus 690 ~~~~a~~~~~~m 701 (844)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=3.8e-07 Score=85.78 Aligned_cols=92 Identities=8% Similarity=-0.019 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMV 616 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 616 (844)
.........|.+.|++++|+..|++.++ +.|+. ..|..+..+|.+.|++++|+..|+.+.+ +.|+ ...|..+.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~lg 79 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLG 79 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHHH
Confidence 3344445555555555555555555555 34443 3455555555555555555555555554 4444 44455555
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 003148 617 DLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m 635 (844)
.+|.+.|++++|+..|+++
T Consensus 80 ~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 5555555555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=7.9e-07 Score=79.98 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=87.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCC
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQN 656 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 656 (844)
...|.+.|++++|...|+++.+ +.|+ ...|..+..+|...|++++|.+.|+++ .+.|+ ..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 3456677777777777777776 4455 667777888888888888888888877 55564 5689999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHcCCchHHHHH
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLLSNIY--ASAGKWTNVARV 697 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 697 (844)
+++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988877776553 344556666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=2e-06 Score=86.08 Aligned_cols=189 Identities=10% Similarity=-0.016 Sum_probs=129.7
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--hhHHH
Q 003148 512 ALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI---KPD--SIVFV 577 (844)
Q Consensus 512 ~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~ 577 (844)
...++|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678899999999999987652 22 35788899999999999999999998765211 111 24566
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHhHhhcCCC---CC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh--------HH
Q 003148 578 GVLTACS-HGGLVNQGWHLFRSMTDIHGVS---PQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND--------VI 643 (844)
Q Consensus 578 ~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~---p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~--------~~ 643 (844)
.+...|. ..|++++|.+++++..+..... +. ..++..+...|...|++++|.+.+++. ...|+. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666774 5699999999999887632111 11 345778899999999999999999986 222211 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHHH--cCCchHHHHHHHH
Q 003148 644 WGSLLAACQKHQNVDIAAYAAERITELDPEKSGV-----HVLLSNIYAS--AGKWTNVARVRLQ 700 (844)
Q Consensus 644 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~ 700 (844)
+...+-.+...|+.+.|...++++.+++|..+.. ...|+.+|.. .+++++|.+.++.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344445667899999999999999999864432 3345555544 3567888877743
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=8.4e-07 Score=75.19 Aligned_cols=105 Identities=12% Similarity=-0.011 Sum_probs=78.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCh---HHHHHHHHhC-CCCCCh---HHHHHHHH
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLL---GEALDLIKSM-PVEPND---VIWGSLLA 649 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~---~eA~~~~~~m-~~~p~~---~~~~~ll~ 649 (844)
.+++.+...+++++|.+.|++..+ +.|+ ..++..+..+|.+.++. ++|+++++++ ...|+. .+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 466677777788888888887776 4454 56777777777765544 4588888876 444433 37888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
+|.+.|++++|++.++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999987766665443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=6.6e-06 Score=74.53 Aligned_cols=110 Identities=9% Similarity=-0.025 Sum_probs=75.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQ 655 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 655 (844)
+......+...|++++|+..|++..+.....+..... -....... ...+|+.+..+|.+.|
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~---------------~~~~~~~~----~~~~~~nla~~y~k~~ 76 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE---------------EAQKAQAL----RLASHLNLAMCHLKLQ 76 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH---------------HHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH---------------HHhhhchh----HHHHHHHHHHHHHhhh
Confidence 4445556777777888887777776632222221100 00000000 1235666777788889
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++++|+..++++++++|+++.++..++.+|...|++++|...++...+.
T Consensus 77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999889999999999999999999999888764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=5.4e-06 Score=75.16 Aligned_cols=134 Identities=9% Similarity=0.049 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
..+......+.+.|++++|+..|++.++ +.|....+ .. .+. .....+. ...|..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~--~~~~~~~~---------~~--~~~-~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF---------SN--EEA-QKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC---------CS--HHH-HHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhhcccc---------ch--HHH-hhhchhH--------HHHHHHHHHH
Confidence 3556677789999999999999999987 33322110 00 011 1111111 1256778889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 619 LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
|.+.|++++|+..+++. .+.| ++..|..+..++...|++++|+..++++++++|+++.+...++.+....+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5566 6778999999999999999999999999999999999999999888776666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=3.1e-06 Score=71.55 Aligned_cols=93 Identities=5% Similarity=-0.066 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC--CchHHHHHHH
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH---QNVDIAAYAAERITELDPEK--SGVHVLLSNI 684 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 684 (844)
...+++.+...+++++|++.|++. ...| +..++..+..++.+. +++++|+..++++++.+|.+ ..++..||.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346788888999999999999998 5555 567888888888664 45667999999999988865 3478899999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 003148 685 YASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 685 ~~~~g~~~~a~~~~~~m~~~ 704 (844)
|.+.|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6e-06 Score=70.75 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG-------VHVLLS 682 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 682 (844)
+-.+++.|.+.|++++|++.|++. .+.| +..+|..+..+|.+.|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345778888999999999999887 4555 5778888999999999999999999999999998875 455677
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 003148 683 NIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 683 ~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.++...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788889999999999987654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.13 E-value=1.4e-05 Score=79.76 Aligned_cols=173 Identities=10% Similarity=-0.023 Sum_probs=131.2
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCh-hHHHHHHHHHhccCcHHHHHHH
Q 003148 521 GDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ----GIKPDS-IVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
+++++|.++|.. ....|...|++++|++.|.++.+. +-.|+. .+|..+...|...|++++|.+.
T Consensus 31 ~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~ 99 (290)
T d1qqea_ 31 YKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (290)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 346777776654 467899999999999999998762 222333 5788899999999999999999
Q ss_pred HHHhHhhcCCCCC----cchHHHHHHHHHh-cCChHHHHHHHHhC----CCCCC----hHHHHHHHHHHHhcCCHHHHHH
Q 003148 596 FRSMTDIHGVSPQ----IVHYGCMVDLLGR-AGLLGEALDLIKSM----PVEPN----DVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 596 ~~~m~~~~~~~p~----~~~~~~li~~~~~-~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
++...+.+.-..+ ...+..+...|.. .|++++|++.++++ +...+ ..+|..+...+...|++++|..
T Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~ 179 (290)
T d1qqea_ 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence 9988763321222 3455666667754 69999999999876 11111 3367888889999999999999
Q ss_pred HHHHHHhcCCCCCc-------hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 663 AAERITELDPEKSG-------VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 663 ~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.++++....|.++. .+..++..+...|+++.|.+.+++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999998887653 3456777788899999999999877654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=1.5e-05 Score=70.56 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366778888899999999999999999999999999999999999999999999999888764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=3.6e-05 Score=69.46 Aligned_cols=128 Identities=15% Similarity=0.094 Sum_probs=90.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGR 621 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 621 (844)
.....+...|++++|++.|+++++ ..+.. .......+. ..+.|. ...|..+..+|.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLR--YVEGS----------RAAAEDADG----------AKLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HHHHH----------HHHSCHHHH----------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hhhhh----------hhhhhhHHH----------HHhChhhHHHHHHHHHHHHh
Confidence 345556777888888888877765 11100 000000100 012222 4567778889999
Q ss_pred cCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 622 AGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
.|++++|+..++++ .+.| +...|..+..++...|++++|+..++++++++|+++.++..|..++.......
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 6677 46689999999999999999999999999999999888888877765544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=2.3e-05 Score=70.76 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=79.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcC
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g 655 (844)
......+...|++++|++.|+++.+. ...........+. ..+.| +...|..+...+.+.|
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~-------------~~~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY-------------VEGSRAAAEDADG------AKLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------------HHHHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-------------hhhhhhhhhhHHH------HHhChhhHHHHHHHHHHHHhhc
Confidence 34555666777888887777766541 0000001111111 11233 3457788888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.01 E-value=2.1e-05 Score=70.94 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5667888899999999999999987 5555 5668888999999999999999999999999999999999998888777
Q ss_pred CCchH-HHHHHHHHHh
Q 003148 689 GKWTN-VARVRLQMKE 703 (844)
Q Consensus 689 g~~~~-a~~~~~~m~~ 703 (844)
+...+ ..+++..|-+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 65543 4555555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.97 E-value=4.8e-05 Score=68.48 Aligned_cols=62 Identities=10% Similarity=-0.021 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|.+.++.+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667777899999999999999999999999999999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=5.3e-06 Score=89.77 Aligned_cols=145 Identities=10% Similarity=-0.002 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHH--HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHH
Q 003148 555 EQAVELFNEMLRQGIKPDSIVFVGVLTA--CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDL 631 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~ 631 (844)
..+++.+++..+....|+..-....+.. ....+.++.++..+... +++.|+ ...+..+...+.+.|+.++|...
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 4455666665554434443322222211 11233344444433322 334444 45566667777777777777666
Q ss_pred HHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 632 IKSMPVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 632 ~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+++. +.++ ..++..+...++..|++++|+..++++++++|+++..|..||.+|...|++.+|...+.+...
T Consensus 143 ~~~a-l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 143 QSSS-CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp CCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHH-hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5443 1111 235666677777777777777777777777787777777777777777777777777766654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.89 E-value=0.0007 Score=65.69 Aligned_cols=180 Identities=9% Similarity=-0.038 Sum_probs=115.1
Q ss_pred cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHH--HhccCcHHHH
Q 003148 520 CGDPQRAMQVFRRMEK-RDVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA--CSHGGLVNQG 592 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a 592 (844)
..+...|...+....+ .+...+..+...+.. ..+.+.|...+++..+.|..+.... ...... .........+
T Consensus 51 ~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~~~~~~~~~~a 129 (265)
T d1ouva_ 51 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDGKVVTRDFKKA 129 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHCSSSCCCHHHH
T ss_pred chhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCCCcccchhHHH
Confidence 3456666666665543 344455555444443 4567788888888877553222111 111112 1234456777
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQIVHYGCMVDLLGR----AGLLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAA 664 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~ 664 (844)
...+..... ..+...+..|...|.. ..+...+..+++...-..+...+..|...+.. ..|.+.|+..+
T Consensus 130 ~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~ 205 (265)
T d1ouva_ 130 VEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 205 (265)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence 777776654 2345566677777765 34566777777766323366666666655554 56899999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 003148 665 ERITELDPEKSGVHVLLSNIYAS----AGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 665 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 706 (844)
+++.+.+ ++..+..|+.+|.+ ..+.++|.+++++..+.|.
T Consensus 206 ~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 206 SKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9998875 56788999999986 4489999999999988763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.88 E-value=5e-05 Score=67.10 Aligned_cols=126 Identities=10% Similarity=-0.038 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
..+......+.+.|++++|+..|++.++ +.|..... .-......... .....|..+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~--~~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEW-----------DDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTC-----------CCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcchhhh-----------hhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 4567777888888999999999998887 33321100 00000000000 112367788999
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 619 LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
|.+.|++++|++.++++ .+.| +..+|..+..++...|++++|+..++++++++|+|+.+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999987 5666 5679999999999999999999999999999999988877766544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.83 E-value=3.1e-05 Score=64.28 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=43.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA 622 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 622 (844)
...+.+.|++++|+..|++.++ ..|+. ..|..+..++.+.|++++|+..|++..+ +.|+ ...|..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHHC
Confidence 3444555555555555555555 44443 3445555555555555555555555554 3333 44444455555555
Q ss_pred CChHHHHHHHH
Q 003148 623 GLLGEALDLIK 633 (844)
Q Consensus 623 g~~~eA~~~~~ 633 (844)
|++++|++.++
T Consensus 98 g~~~~A~~~l~ 108 (112)
T d1hxia_ 98 HNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.0049 Score=61.04 Aligned_cols=201 Identities=13% Similarity=0.088 Sum_probs=105.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchH
Q 003148 178 CLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLEL 257 (844)
Q Consensus 178 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 257 (844)
.+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+..+|........
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp ----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHH
Confidence 344455566666666666665443 6666666677777777766665431 34466666666665554433
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003148 258 GDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLH 334 (844)
Q Consensus 258 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 334 (844)
+ .+.......++.....++..|-..|..++...+++.... .+...++.++..|++.+ .++-++.++..
T Consensus 88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--- 158 (336)
T d1b89a_ 88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--- 158 (336)
T ss_dssp H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---
T ss_pred H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---
Confidence 2 111222333444556677888888888888888876432 34456777777777764 34444444332
Q ss_pred CCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHH
Q 003148 335 GPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIA 414 (844)
Q Consensus 335 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 414 (844)
. +......++..|-..+- +..++-.|.+.|++++|..+.-.=.. ++......+.
T Consensus 159 s---~~y~~~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~~~~-~~~~~~~f~e 212 (336)
T d1b89a_ 159 W---SRVNIPKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMNHPT-DAWKEGQFKD 212 (336)
T ss_dssp S---TTSCHHHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHHSTT-TTCCHHHHHH
T ss_pred c---ccCCHHHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHHcch-hhhhHHHHHH
Confidence 1 12223334444443332 34566778888888877665543221 2222333444
Q ss_pred HHHhcCCHHH
Q 003148 415 GLIKNGDVES 424 (844)
Q Consensus 415 ~~~~~g~~~~ 424 (844)
.+.+..+.+.
T Consensus 213 ~~~k~~N~e~ 222 (336)
T d1b89a_ 213 IITKVANVEL 222 (336)
T ss_dssp HHHHCSSTHH
T ss_pred HHHccCChHH
Confidence 4555444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=9.6e-06 Score=71.06 Aligned_cols=126 Identities=12% Similarity=0.093 Sum_probs=77.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcc----------CcHHHHHHHHHHhHhhcCCCCC-cchHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHG----------GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCM 615 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 615 (844)
|.+.+.+++|+..|++.++ +.|+. ..+..+..+|... +.+++|+..|+++.+ +.|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 4556677888888888888 67776 4555666566533 334556666665555 4444 4445555
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
..+|...|++. ++... ..+++++|...++++++++|++..++..|+.. .+|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHH
Confidence 55554433221 11111 11246889999999999999998777666654 3566
Q ss_pred HHHHHHHhCCC
Q 003148 696 RVRLQMKEQGI 706 (844)
Q Consensus 696 ~~~~~m~~~~~ 706 (844)
+++....++|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 66666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00016 Score=61.49 Aligned_cols=90 Identities=9% Similarity=0.066 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-c-------ch
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-I-------VH 611 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~ 611 (844)
+..+...|.+.|++++|+..|++.++ +.|+. ..+..+..+|.+.|++++|++.++.+++ +.|+ . .+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE---VGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH---hCcccHHHHHHHHHH
Confidence 44566667777777777777777777 45554 5666677777777777777777777765 2222 1 13
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
|..+.+.+...+++++|.+.+++.
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444455555555555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=0.0002 Score=64.69 Aligned_cols=115 Identities=8% Similarity=-0.073 Sum_probs=82.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQN 656 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 656 (844)
..........|++++|.+.|....+.+.-.+-... ....-......-++.. ....|..+...+...|+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 34445677889999999999998873321110000 0000011111111111 23478888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+++|...++++++.+|.+...|..|+.+|...|++++|.+.|+.+++
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998854
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.032 Score=54.92 Aligned_cols=135 Identities=7% Similarity=-0.077 Sum_probs=62.1
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 003148 101 ATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLI 180 (844)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 180 (844)
+|..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.+++..|..+... . .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k---~---~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---A---NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH---H---TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHH---c---CCHHHHHHHH
Confidence 4444444455556667777777777765432 55666666666666665554432 2 2445666666
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 003148 181 NFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKL 252 (844)
Q Consensus 181 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 252 (844)
..+.+.....-|.-+ ......+...-..++..|-..|.+++.+.++...... -.++...++.++..+++.
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 666655554443221 1111122223345666666666666666666654322 123444455555555553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.47 E-value=3e-05 Score=67.79 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=58.7
Q ss_pred HhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 620 GRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK----------HQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
-|.+.+++|++.|++. ...| +..+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444455555555554 3334 23344444444432 2456889999999999999999999999999988
Q ss_pred cCC-----------chHHHHHHHHHHhC
Q 003148 688 AGK-----------WTNVARVRLQMKEQ 704 (844)
Q Consensus 688 ~g~-----------~~~a~~~~~~m~~~ 704 (844)
.|+ +++|.+.+++..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 764 57788888777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.0002 Score=63.26 Aligned_cols=63 Identities=11% Similarity=-0.010 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEK-----------SGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..|+.+..++...|++++|...+++++++.|+. ...+..++.+|...|++++|.+.+++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888899999999999999888764422 125778999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00013 Score=78.45 Aligned_cols=133 Identities=8% Similarity=-0.059 Sum_probs=72.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 629 (844)
.+.++.|+..+++..+ +.|+. ..+..+...+...|+.++|...+....+ ..| ...+..+++++...|++++|.
T Consensus 99 ~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~~-~~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---YIC-QHCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHHTC---------------------------------CCHHHH---HHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---CCH-HHHHHHHHHHHHHcccHHHHH
Confidence 3445555555554443 45544 4566666677777888888777766554 112 245667788888888888888
Q ss_pred HHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 630 DLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 630 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
..++++ .+.|+ ...|+.|...+...|+..+|...+.+++..+|..+.++..|+.++.+..
T Consensus 173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 888877 56665 4578888888888888888888888888888888777777777765443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=0.00012 Score=70.81 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=81.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e 627 (844)
+.|++++|+..+++.++ ..|+. ..+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 46888888888888888 67766 5677777788888888888888888877 5565 3444445555554454444
Q ss_pred HHHHHHhC--CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 628 ALDLIKSM--PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 628 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|+.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 43332222 12232 2233334455677889999999999888888887654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.36 E-value=0.011 Score=56.68 Aligned_cols=146 Identities=12% Similarity=-0.029 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHhcCCC-CHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCcHHH
Q 003148 521 GDPQRAMQVFRRMEKR-DVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH----GGLVNQ 591 (844)
Q Consensus 521 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 591 (844)
.+.+.|...++...+. .......+...+.. ......|...+.+... ..+...+..+...+.. ..+...
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~ 164 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKK 164 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhhhhccCCCccccccc
Confidence 4455555555544322 22222222222222 2334555555555544 2233444444444442 345566
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQIVHYGCMVDLLGR----AGLLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYA 663 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~ 663 (844)
+..+++...+ . .+......|..+|.. ..+.++|..+|++....-++..+..|...+.. ..|.++|.+.
T Consensus 165 ~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 165 ALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred chhhhhcccc-c---cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 6666666554 1 233444445555544 45677788888776222245555566555543 3377888888
Q ss_pred HHHHHhcCCC
Q 003148 664 AERITELDPE 673 (844)
Q Consensus 664 ~~~~~~~~p~ 673 (844)
++++.+..+.
T Consensus 241 ~~kAa~~g~~ 250 (265)
T d1ouva_ 241 FKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHCcCH
Confidence 8888776653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00035 Score=55.55 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----C----CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM----P----VEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
.++..+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3555566666666666665544 1 1222 45788899999999999999999999999999998888777543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.0012 Score=52.32 Aligned_cols=63 Identities=13% Similarity=-0.082 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEKS-------GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+-.+...+.+.|++++|...+++++++.|.++ .++..|+.+|.+.|++++|.+.++++.+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445677889999999999999999998766543 46889999999999999999999998874
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.07 E-value=0.0015 Score=57.38 Aligned_cols=33 Identities=15% Similarity=-0.060 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
++..+..++...|++++|...+++++++.|+..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 566778888999999999999999998876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.85 E-value=0.00022 Score=68.93 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=86.3
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~ 659 (844)
..+.|++++|+..+++.++ ..|+ ...+..++.+|++.|++++|.+.++.. ...|+. ..+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 3467999999999999998 5666 789999999999999999999999998 667754 455555555544333333
Q ss_pred HHHHHHHHHh-cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 660 AAYAAERITE-LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 660 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+......... .+|++...+...+.++...|++++|.+.++.+.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2222111111 23444445667788899999999999999998775
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=0.0069 Score=54.17 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
.+..++..+.+.|++++|+..++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445555666666666666666555 3344 4445666666666666666666665555
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=0.076 Score=42.94 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 641 DVIWGSLLAACQKH---QNVDIAAYAAERITELDPEKS-GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 641 ~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..+.-.+..++.++ .+.++|+.+++.++..+|.+. ..+..|+-.|.+.|++++|++.++.+.+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444444433 344566666666666666543 3555666666677777777766666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.57 E-value=1.3 Score=35.02 Aligned_cols=140 Identities=8% Similarity=0.054 Sum_probs=88.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
.-.|..++..++..+..... +..-|+-++.-....-+-+-..+.++..-+-+.+.| ++++...
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHHH
Confidence 34577777777777766521 222233233222223334444555555544333333 3444444
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 003148 629 LDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 629 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 707 (844)
..-+-.+. -+.......+....++|+-+.-.++++.+++-+.-+|....-++++|.+.|...++.+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44444442 133445556777888999898889999988866667889999999999999999999999999998874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.66 E-value=0.41 Score=39.48 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYAS----AGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 706 (844)
.|.++|.+.++++.+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 46778888888877653 45667788888876 4578888888888877763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.26 Score=39.70 Aligned_cols=70 Identities=11% Similarity=-0.011 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 609 IVHYGCMVDLLGRAG---LLGEALDLIKSM-PVEP-ND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 609 ~~~~~~li~~~~~~g---~~~eA~~~~~~m-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
+.+--....++.++. +.++++.++++. ...| +. ..|..|.-+|.+.|++++|.+.++++++++|++..+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 334344455555554 344666666665 2233 32 4677788889999999999999999999999986443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.88 E-value=1.2 Score=36.49 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=10.7
Q ss_pred ChHHHHHHHHHHHhCC
Q 003148 452 MFEEAMELFRVMLSER 467 (844)
Q Consensus 452 ~~~~A~~l~~~m~~~g 467 (844)
++++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5667777777766655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=7.8 Score=39.01 Aligned_cols=336 Identities=10% Similarity=-0.015 Sum_probs=156.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHcCC
Q 003148 312 MSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEG-WDSICNTMIDMYMKCGK 390 (844)
Q Consensus 312 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~ 390 (844)
+.-..+.|+..++..+...+.+. | -..|...-..-.+.++.. ..++...+.+..-.| .......-+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~-~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQP-AVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCC-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCC-HHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 44566778888877777666322 2 233433322222222222 234555555543322 22334445566677777
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCccc
Q 003148 391 QEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKV 470 (844)
Q Consensus 391 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 470 (844)
.+.....+..-+ .+...-.....+....|+.++|.+.+..+-.. ..-..+..-.+|..+...|...
T Consensus 88 w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 88 WRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHhcCCCC
Confidence 776665553322 13333334555666666666665554432110 0011233334444444433211
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHh
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAM 550 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 550 (844)
+...+ .-+......|+...+..+...+ -..........+..+.....+.. ..... ..+......+..++.+
T Consensus 154 ~~~~~-~R~~~~l~~~~~~~a~~l~~~l----~~~~~~~~~a~~~l~~~p~~~~~---~~~~~-~~~~~~~~~~~~~l~r 224 (450)
T d1qsaa1 154 PLAYL-ERIRLAMKAGNTGLVTVLAGQM----PADYQTIASAIISLANNPNTVLT---FARTT-GATDFTRQMAAVAFAS 224 (450)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHTC----CGGGHHHHHHHHHHHHCGGGHHH---HHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHcCChhhHHHHHhhC----ChhHHHHHHHHHHHHhChHhHHH---HHhcC-CCChhhhHHHHHHHHH
Confidence 11111 1111222234444444443221 11122333444444333222222 21111 1222222222233322
Q ss_pred --cCChHHHHHHHHHHHHCC-CCCChh-HHH-HHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh
Q 003148 551 --EGNGEQAVELFNEMLRQG-IKPDSI-VFV-GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 551 --~g~~~~A~~l~~~m~~~g-~~p~~~-t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 625 (844)
..+.+.|..++....... ..++.. ... .+.......+..+.+..++..... . ..+.....-++....+.+++
T Consensus 225 la~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~w~~~~al~~~~~ 301 (450)
T d1qsaa1 225 VARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDR 301 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCH
T ss_pred HhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc-c--ccchHHHHHHHHHHHHcCCh
Confidence 246777777777766532 222221 111 222233345666777777766554 2 22333333344455667888
Q ss_pred HHHHHHHHhCCCCCC-hHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 626 GEALDLIKSMPVEPN-DVIW-GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 626 ~eA~~~~~~m~~~p~-~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
..+...|+.|+..|. ..-| .-+..+....|+.+.|...++.+.. .+ ++|-.|+
T Consensus 302 ~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LA 356 (450)
T d1qsaa1 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVA 356 (450)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHH
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHH
Confidence 888888888854442 2233 2344567778888888888887764 22 3555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=8.8 Score=38.60 Aligned_cols=227 Identities=12% Similarity=-0.036 Sum_probs=117.3
Q ss_pred HHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 003148 71 VCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTK 150 (844)
Q Consensus 71 l~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 150 (844)
+...++.++ .......|. ..| .+...--....+..+.|+..+|...+..+...|...
T Consensus 79 l~~L~~~~~---w~~~~~~~~-----~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~-------------- 135 (450)
T d1qsaa1 79 VNELARRED---WRGLLAFSP-----EKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-------------- 135 (450)
T ss_dssp HHHHHHTTC---HHHHHHHCC-----SCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC--------------
T ss_pred HHHHHhccC---HHHHHHhcc-----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--------------
Confidence 556677777 777666655 332 344444456677888999999999888888766321
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 003148 151 SSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEM 230 (844)
Q Consensus 151 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 230 (844)
.+....++..+.+.|. .+...+-.-+......|+...|..+...++..........+..... ...+......
T Consensus 136 ---p~~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~- 207 (450)
T d1qsaa1 136 ---PNACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART- 207 (450)
T ss_dssp ---CTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-
T ss_pred ---chHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-
Confidence 1222334555555552 3444444455666677888888888887775444444444444322 2222222211
Q ss_pred HHcCCCCCcchHHHHHHHHHhc--CCchHHHHHHHHHHHhCCCcchh---HHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 003148 231 VEEGIKPNSVTMVCVISACAKL--QNLELGDRVCAYIDELGMKANAL---MVNALVDMYMKCGAVDTAKQLFGECKD--R 303 (844)
Q Consensus 231 ~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~g~~~~~~---~~~~Li~~y~~~g~~~~A~~~f~~m~~--~ 303 (844)
..++......+..+..+. .+.+.+..++............. ....+...+...+..+.|...++.... .
T Consensus 208 ----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 283 (450)
T d1qsaa1 208 ----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ 283 (450)
T ss_dssp ----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC
T ss_pred ----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc
Confidence 112222223333333332 35566666666655443222111 112222233334555666655544322 1
Q ss_pred CceehHHHHHHHHHcCChHHHHHHHHHHH
Q 003148 304 NLVLCNTIMSNYVRLGLAREALAILDEML 332 (844)
Q Consensus 304 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 332 (844)
+.....-.+......+++..+...|..|.
T Consensus 284 ~~~~~~w~~~~al~~~~~~~~~~~~~~l~ 312 (450)
T d1qsaa1 284 STSLIERRVRMALGTGDRRGLNTWLARLP 312 (450)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHhcC
Confidence 22222223344455667777777776653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.50 E-value=4 Score=32.25 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=59.6
Q ss_pred HhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
.+|+++......+-.+.. +..-.+..++...+.|+-++-.++++.+.+. -+|+......+.+||.+.|...++-+++.
T Consensus 67 s~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 67 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 456666666665555433 2333455567778888888888888887664 47778888888888888898888888888
Q ss_pred HhHhhcCC
Q 003148 598 SMTDIHGV 605 (844)
Q Consensus 598 ~m~~~~~~ 605 (844)
++-+ .|+
T Consensus 145 ~ACe-~G~ 151 (161)
T d1wy6a1 145 EACK-KGE 151 (161)
T ss_dssp HHHH-TTC
T ss_pred HHHH-HhH
Confidence 8876 443
|