Citrus Sinensis ID: 003273
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFL5 | 850 | Pentatricopeptide repeat- | yes | no | 0.965 | 0.947 | 0.596 | 0.0 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.852 | 0.816 | 0.399 | 1e-156 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.918 | 0.946 | 0.370 | 1e-149 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.944 | 0.935 | 0.360 | 1e-148 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.833 | 0.972 | 0.372 | 1e-147 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.912 | 0.924 | 0.355 | 1e-141 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.793 | 0.842 | 0.365 | 1e-140 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.820 | 0.875 | 0.369 | 1e-140 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.882 | 0.766 | 0.358 | 1e-139 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.948 | 0.815 | 0.347 | 1e-139 |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/847 (59%), Positives = 621/847 (73%), Gaps = 42/847 (4%)
Query: 20 NHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQ-----IIVQNLTHVPPSHLI 74
+H + + LFS T+ P +IT + +CK+++QV LIHQ+ I+ NLT SHLI
Sbjct: 14 SHQYIKVSLFS-TSAP--EITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT----SHLI 66
Query: 75 AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
+ Y+S S A+SLL+R PS V+ WN+LIR + LF M W PD
Sbjct: 67 STYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPD 126
Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
YTFPFV KACGE+ S RCG S HA+ +GF SNVFV NAL+AMY+RC +LS AR++FD
Sbjct: 127 NYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFD 186
Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
EM + D+VSWN+I+ +YA+ G + L +F+RMT + + D ++LVN L CASLG
Sbjct: 187 EM---SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243
Query: 255 TWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
T S GKQ CGMM+EA VF M VKDVVSWNAMV
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303
Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
GYS+IG FEDA LF+KM++E +K++VVTWSA I+GYAQRG G+EAL V RQM G++P
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363
Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV-DGSHPDDLMVINALIDMYAKCKSV 407
N VTL+S+LSGCASVGAL+ GKE HCY IK + + H D+ MVIN LIDMYAKCK V
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV 423
Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
D AR MFD+++PK RDV TWTVMIG YSQ+G AN AL L +MF++D +PNAFT+SCA
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483
Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
L+ACA LAALR G+QIHAY LRNQ + FV+NCLIDMY++ G I AR+VFDN+ +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543
Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
V+WTSLMTGYGMHG G++A FD+MR+ G DGVT LV+LYACSHSGM+DQG++YF+
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603
Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
M FG+S EHYAC+VDLLGRA RL+ A+ LIE MPMEP P++WVA L+ CRIH V
Sbjct: 604 RMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKV 663
Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
ELGE AA ++ EL S DGSYTLLSN+YANAGRWKDV RIRSLM+H GVKKRPGCSWV+G
Sbjct: 664 ELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723
Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
+GT TFFVGD+THP +++IY++L +QRIK +GYVP+T FALHDVDDEEK DLLFEHS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783
Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
EKLALAYGILTT G IRITKNLR+CGDCH+A T++S II+H+IILRDS+RFHHFK GS
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGS 843
Query: 828 CTCKGYW 834
C+CKGYW
Sbjct: 844 CSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 293/734 (39%), Positives = 437/734 (59%), Gaps = 23/734 (3%)
Query: 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAV 160
+WN L+ + + LF +MM G D YTF V K+ L S G +H
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 220
Query: 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA 220
I SGF V N+L+A Y + + AR++FDEM + D++SWN+I+ Y +G A
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER---DVISWNSIINGYVSNGLA 277
Query: 221 EGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV 280
E GL +F +M ++ D ++V+ + CA S G+ + K F R +D
Sbjct: 278 EKGLSVFVQMLVS-GIEIDLATIVSVFAGCADSRLISLGRAVHSIG-VKACFSR---EDR 332
Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
N ++ YS+ G + A A+F++M +V V+++++IAGYA+ G EA+ +F +
Sbjct: 333 FC-NTLLDMYSKCGDLDSAKAVFREMSDRSV----VSYTSMIAGYAREGLAGEAVKLFEE 387
Query: 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400
M+ G+ P+V T+ ++L+ CA L GK H + + L D + V NAL+DM
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD------IFVSNALMDM 441
Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
YAKC S+ A ++F + K D+ +W +IG YS+N AN+AL+LF + ++K P+
Sbjct: 442 YAKCGSMQEAELVFSEMRVK--DIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFSPD 498
Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
T++C L ACA L+A GR+IH Y++RN Y VAN L+DMY++ G + A ++F
Sbjct: 499 ERTVACVLPACASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
D++ +++VSWT ++ GYGMHG G +A F+QMR+ G+ D ++F+ LLYACSHSG+VD
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617
Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
+G ++F+ M E I EHYACIVD+L R L +A IE MP+ P IW ALL G
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677
Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
CRIH +V+L E A ++ ELE E G Y L++NIYA A +W+ V R+R + G++K P
Sbjct: 678 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 737
Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
GCSW++ K F GD ++P+++ I L + R+ GY P T +AL D ++ EK
Sbjct: 738 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797
Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
+ L HSEKLA+A GI+++ G IR+TKNLR+CGDCH F+S + EI+LRDSNRF
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857
Query: 821 HHFKEGSCTCKGYW 834
H FK+G C+C+G+W
Sbjct: 858 HQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/797 (37%), Positives = 454/797 (56%), Gaps = 31/797 (3%)
Query: 41 SLLLRQCKSLTQVYLIHQQIIVQNL--THVPPSHLIAAYVSHNAPSPALSLLQRISPSPF 98
+LLL +C SL ++ I + L H + L++ + + + A + + I S
Sbjct: 41 ALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID-SKL 99
Query: 99 SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
+V + + +++ ++ D A + F++M P Y F ++LK CG+ R G +H
Sbjct: 100 NVLY-HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIH 158
Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
++ SGF ++F L MYA+C ++ AR++FD M + D+VSWNTIVA Y+Q+G
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER---DLVSWNTIVAGYSQNG 215
Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK 278
A L + M + ++ +++V+ L A ++L S GK E R
Sbjct: 216 MARMALEMVKSMCEE-NLKPSFITIVSVLPAVSALRLISVGK------EIHGYAMRSGFD 268
Query: 279 DVVSWN-AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
+V+ + A+V Y++ GS E A LF M + NV V+W+++I Y Q + EA+ +
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNV----VSWNSMIDAYVQNENPKEAMLI 324
Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397
F++M G++P V+++ L CA +G L G+ H LSV+ ++ V+N+L
Sbjct: 325 FQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH------KLSVELGLDRNVSVVNSL 378
Query: 398 IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457
I MY KCK VD A MF + ++R + +W MI ++QNG DAL F QM + + V
Sbjct: 379 ISMYCKCKEVDTAASMFGKL--QSRTLVSWNAMILGFAQNGRPIDALNYFSQM--RSRTV 434
Query: 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517
KP+ FT + A A L+ + IH V+R+ + + FV L+DMY++ G I AR
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV-FVTTALVDMYAKCGAIMIAR 493
Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
++FD + +R+V +W +++ GYG HG G A F++M+K + P+GVTFL ++ ACSHSG
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
+V+ GLK F M + + I +HY +VDLLGRA RL+EA + I MP++P ++ A+
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613
Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
L C+IH NV E AA RL EL + G + LL+NIY A W+ V ++R M G++
Sbjct: 614 LGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673
Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
K PGCS V+ K +FF G HP S+KIY L L+ IK GYVP T+ L V+++
Sbjct: 674 KTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVEND 732
Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
K LL HSEKLA+++G+L T GT I + KNLR+C DCH+A +IS++ EI++RD
Sbjct: 733 VKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDM 792
Query: 818 NRFHHFKEGSCTCKGYW 834
RFHHFK G+C+C YW
Sbjct: 793 QRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 310/860 (36%), Positives = 468/860 (54%), Gaps = 72/860 (8%)
Query: 21 HLFTNIKLFSVTTTP-------CIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH-VPPSH 72
HL + + TT P C K T L+ CK++ ++ + H+ + Q L + V
Sbjct: 9 HLSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTIT 68
Query: 73 LIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR 129
+ A +LS + + S S + F +N+LIR L + A LFL+MM
Sbjct: 69 KLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNS 128
Query: 130 GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189
G PD+YTFPF L AC + + G +H +I G+ ++FV N+L+ YA C L A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188
Query: 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249
R++FDEM + ++VSW +++ YA+ A+ + LF RM D +V + V++V +SA
Sbjct: 189 RKVFDEMSER---NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISA 245
Query: 250 CASLGTWSRGKQCGMMEEAKKVF-----ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304
CA L +E +KV+ ++V D++ +A+V Y + + + A LF
Sbjct: 246 CAKLED---------LETGEKVYAFIRNSGIEVNDLMV-SALVDMYMKCNAIDVAKRLFD 295
Query: 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364
+ N+ L +A+ + Y ++G EAL VF M G+ P+ ++++S +S C+ +
Sbjct: 296 EYGASNLDL----CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLR 351
Query: 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424
+L GK H Y ++ +G D + NALIDMY KC D A +FD ++ N+ V
Sbjct: 352 NILWGKSCHGYVLR-----NGFESWD-NICNALIDMYMKCHRQDTAFRIFDRMS--NKTV 403
Query: 425 ATWTVMIGSYSQNGGANDALALFPQM------------------------------FQQD 454
TW ++ Y +NG + A F M Q
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463
Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDID 514
+ V + T+ AC L AL + I+ Y+ +N ++ + + L+DM+SR GD +
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVR-LGTTLVDMFSRCGDPE 522
Query: 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574
+A +F++L R+V +WT+ + M G ++A FD M ++GL PDGV F+ L ACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582
Query: 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634
H G+V QG + F SM K G+S HY C+VDLLGRA L+EAV+LIE MPMEP +IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642
Query: 635 VALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694
+LL CR+ NVE+ AA ++ L E+ GSY LLSN+YA+AGRW D+A++R MK
Sbjct: 643 NSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEK 702
Query: 695 GVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDV 754
G++K PG S +Q + T F GD +HP+ I +L + QR +G+VP S L DV
Sbjct: 703 GLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDV 762
Query: 755 DDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIIL 814
D++EK +L HSEKLA+AYG++++ GT IRI KNLR+C DCHS F S + N EIIL
Sbjct: 763 DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIIL 822
Query: 815 RDSNRFHHFKEGSCTCKGYW 834
RD+NRFH+ ++G C+C +W
Sbjct: 823 RDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1347), Expect = e-147, Method: Compositional matrix adjust.
Identities = 295/793 (37%), Positives = 432/793 (54%), Gaps = 98/793 (12%)
Query: 46 QCKSLTQVYLIHQQII-VQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWN 104
+ KS +Q +H Q I Q+L+H S +I+ Y + AL L + + P V W
Sbjct: 17 RIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPP--VLAWK 74
Query: 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS 164
++IR L A F++M G PD FP VLK+C + R G SVH I
Sbjct: 75 SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134
Query: 165 GFDSNVFVCNALMAMYARCDTLSY---ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221
G D +++ NALM MYA+ + +FDEM Q + SGD +
Sbjct: 135 GMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQ--------------RTSNSGDED 180
Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV 281
V A + G ++ ++VFE M KDVV
Sbjct: 181 ----------------------VKAETCIMPFG----------IDSVRRVFEVMPRKDVV 208
Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
S+N +IAGYAQ G +AL + R+M
Sbjct: 209 SYNT-----------------------------------IIAGYAQSGMYEDALRMVREM 233
Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401
L+P+ TL S+L + ++ GKE H Y I++ + D+ + ++L+DMY
Sbjct: 234 GTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGID------SDVYIGSSLVDMY 287
Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461
AK ++ + +F + RD +W ++ Y QNG N+AL LF QM VKP A
Sbjct: 288 AKSARIEDSERVFSRLYC--RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAK--VKPGA 343
Query: 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFD 521
S + ACA LA L G+Q+H YVLR + I F+A+ L+DMYS+ G+I AR +FD
Sbjct: 344 VAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI-FIASALVDMYSKCGNIKAARKIFD 402
Query: 522 NLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581
+ + VSWT+++ G+ +HG G +A F++M+++G+ P+ V F+ +L ACSH G+VD+
Sbjct: 403 RMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 462
Query: 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGC 641
YF+SM+K +G++ EHYA + DLLGRA +L+EA I M +EPT +W LL+ C
Sbjct: 463 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522
Query: 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPG 701
+H N+EL E A ++ ++SE G+Y L+ N+YA+ GRWK++A++R M+ G++K+P
Sbjct: 523 SVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPA 582
Query: 702 CSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGD 761
CSW++ K T F GDR+HP KI E L ++++++ GYV TS LHDVD+E K +
Sbjct: 583 CSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRE 642
Query: 762 LLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFH 821
LLF HSE+LA+A+GI+ T PGT IR+TKN+RIC DCH AI FIS I EII+RD++RFH
Sbjct: 643 LLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFH 702
Query: 822 HFKEGSCTCKGYW 834
HF G+C+C YW
Sbjct: 703 HFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/795 (35%), Positives = 451/795 (56%), Gaps = 34/795 (4%)
Query: 43 LLRQCKSLTQVYLIHQQIIV-QNLTHVPPS-HLIAAYVSHNAPSPALSLLQRISPSPFSV 100
L R C +L +H +++V + + +V S L+ Y + A I V
Sbjct: 60 LFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR--DV 117
Query: 101 FWWNALIRRAVRLRLPDNAFRLF-LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
+ WN +I R R F L M+ G PD TFP VLKAC + G+ +H
Sbjct: 118 YAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHC 174
Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
+ GF +V+V +L+ +Y+R + AR LFDEM + D+ SWN +++ Y QSG+
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM---PVRDMGSWNAMISGYCQSGN 231
Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
A+ L L + D V++V+ LSAC G ++RG + + + ++ +
Sbjct: 232 AKEALTLSNGLRA-----MDSVTVVSLLSACTEAGDFNRG----VTIHSYSIKHGLESEL 282
Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
VS N ++ Y+ G D +F +M ++ ++W+++I Y A+ +F+
Sbjct: 283 FVS-NKLIDLYAEFGRLRDCQKVFDRMYVRDL----ISWNSIIKAYELNEQPLRAISLFQ 337
Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
+M+ ++P+ +TL+SL S + +G + + +T+++ G +D+ + NA++
Sbjct: 338 EMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK-----GWFLEDITIGNAVVV 392
Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
MYAK VD AR +F+ + N DV +W +I Y+QNG A++A+ ++ M +++ +
Sbjct: 393 MYAKLGLVDSARAVFNWLP--NTDVISWNTIISGYAQNGFASEAIEMYNIM-EEEGEIAA 449
Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
N T L AC++ ALR G ++H +L+N + + FV L DMY + G ++ A +
Sbjct: 450 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV-FVVTSLADMYGKCGRLEDALSL 508
Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
F + + N V W +L+ +G HG G+KA F +M EG+ PD +TF+ LL ACSHSG+V
Sbjct: 509 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 568
Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
D+G F+ M ++GI+ +HY C+VD+ GRA +L+ A++ I+ M ++P IW ALL+
Sbjct: 569 DEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLS 628
Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
CR+H NV+LG++A+ L E+E E G + LLSN+YA+AG+W+ V IRS+ G++K
Sbjct: 629 ACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 688
Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
PG S ++ F+ G++THP +++Y L L ++K +GYVP F L DV+D+EK
Sbjct: 689 PGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEK 748
Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
+L HSE+LA+A+ ++ T T IRI KNLR+CGDCHS FIS I EII+RDSNR
Sbjct: 749 EHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNR 808
Query: 820 FHHFKEGSCTCKGYW 834
FHHFK G C+C YW
Sbjct: 809 FHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust.
Identities = 280/767 (36%), Positives = 430/767 (56%), Gaps = 105/767 (13%)
Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216
VH + SG +V++ N LM +Y++ +AR+LFDEM + SWNT+++AY++
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEM---PLRTAFSWNTVLSAYSK 92
Query: 217 SGDAEGGLMLFARMT---------------------GDVKVQGDGV---------SLVNA 246
GD + F ++ ++V GD V +L N
Sbjct: 93 RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNV 152
Query: 247 LSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDV 280
L++ A+ GK+ CG AK VF+RM V+D+
Sbjct: 153 LASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDI 212
Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340
SWNAM+ + ++G + A A F++M + ++ VTW+++I+G+ QRG+ ALD+F +
Sbjct: 213 SSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGFNQRGYDLRALDIFSK 268
Query: 341 M-QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
M + L P+ TL S+LS CA++ L +GK+ H + + + G +V+NALI
Sbjct: 269 MLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISG------IVLNALIS 322
Query: 400 MYAKCKSVDVARVMFDA-------------------------------IAPKNRDVATWT 428
MY++C V+ AR + + ++ K+RDV WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382
Query: 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488
MI Y Q+G +A+ LF M + +PN++TL+ L + LA+L G+QIH +
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQ--RPNSYTLAAMLSVASSLASLSHGKQIHGSAV 440
Query: 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKA 547
++ E+ V+N LI MY+++G+I +A FD ++ +R+ VSWTS++ HG ++A
Sbjct: 441 KSG-EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499
Query: 548 HWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607
F+ M EGL PD +T++ + AC+H+G+V+QG +YFD M I HYAC+VD
Sbjct: 500 LELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVD 559
Query: 608 LLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667
L GRA L EA E IE MP+EP + W +LL+ CR+H N++LG++AA RLL LE E G+
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGA 619
Query: 668 YTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKI 727
Y+ L+N+Y+ G+W++ A+IR MK VKK G SW++ K F V D THP+ +I
Sbjct: 620 YSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEI 679
Query: 728 YEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRI 787
Y + + IK MGYVP T+ LHD+++E K +L HSEKLA+A+G+++T T +RI
Sbjct: 680 YMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRI 739
Query: 788 TKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
KNLR+C DCH+AI FIS ++ EII+RD+ RFHHFK+G C+C+ YW
Sbjct: 740 MKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 282/763 (36%), Positives = 424/763 (55%), Gaps = 79/763 (10%)
Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT-----------FPFVLKACGELPSS 151
WN I +R + A R+F +M R W Y F K E+P
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPR--WSSVSYNGMISGYLRNGEFELARKLFDEMP-- 122
Query: 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211
+ ++ N ++ Y R L AR+LF+ M + +C SWNT++
Sbjct: 123 ---------------ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC---SWNTML 164
Query: 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDG-----VSLVNALSAC---------------A 251
+ YAQ+G + +F RM V + V AC
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNC 224
Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
LG + + K+ + EA++ F+ M V+DVVSWN ++TGY++ G ++A LF E+
Sbjct: 225 LLGGFVKKKK---IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----DESP 277
Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
+V TW+A+++GY Q EA ++F +M E N V+ ++L+G + + KE
Sbjct: 278 VQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKE 333
Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
R +S N +I YA+C + A+ +FD + PK RD +W MI
Sbjct: 334 LFDVMPCRNVST----------WNTMITGYAQCGKISEAKNLFDKM-PK-RDPVSWAAMI 381
Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
YSQ+G + +AL LF QM ++ + ++F S AL CA + AL G+Q+H +++
Sbjct: 382 AGYSQSGHSFEALRLFVQMEREGGRLNRSSF--SSALSTCADVVALELGKQLHGRLVKGG 439
Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
YE FV N L+ MY + G I+ A +F + +++VSW +++ GY HG G+ A F
Sbjct: 440 YETGC-FVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFF 498
Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
+ M++EGL PD T + +L ACSH+G+VD+G +YF +M++++G+ ++HYAC+VDLLGR
Sbjct: 499 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGR 558
Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
A L++A L++ MP EP IW LL R+H N EL E AA+++ +E E G Y LL
Sbjct: 559 AGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLL 618
Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
SN+YA++GRW DV ++R M+ GVKK PG SW++ + T TF VGD HP+ +I+ L
Sbjct: 619 SNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 678
Query: 732 AGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNL 791
L R+K GYV +TS LHDV++EEK ++ HSE+LA+AYGI+ + G PIR+ KNL
Sbjct: 679 EELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNL 738
Query: 792 RICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
R+C DCH+AI +++ I IILRD+NRFHHFK+GSC+C YW
Sbjct: 739 RVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 274/764 (35%), Positives = 442/764 (57%), Gaps = 28/764 (3%)
Query: 73 LIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWH 132
L++ Y ++ S A L +V W N+++ LF +M G
Sbjct: 223 LVSMYAKNDDLSAARRLFDGFQEKGDAVLW-NSILSSYSTSGKSLETLELFREMHMTGPA 281
Query: 133 PDEYTFPFVLKACGELPSSRCGSSVHA-VICSSGFDSNVFVCNALMAMYARCDTLSYARQ 191
P+ YT L AC ++ G +HA V+ SS S ++VCNAL+AMY RC + A +
Sbjct: 282 PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAER 341
Query: 192 LFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACA 251
+ +M D+V+WN+++ Y Q+ + L F+ M + D VS+ + ++A
Sbjct: 342 ILRQMNNA---DVVTWNSLIKGYVQNLMYKEALEFFSDMIA-AGHKSDEVSMTSIIAASG 397
Query: 252 SLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
L G ME V + ++ N ++ YS+ F +M +++
Sbjct: 398 RLSNLLAG-----MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDL 452
Query: 312 KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
++W+ VIAGYAQ EAL++FR + +E + + L S+L + + ++L+ KE
Sbjct: 453 ----ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKE 508
Query: 372 THCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI 431
HC+ +++ L D ++ N L+D+Y KC+++ A +F++I K +DV +WT MI
Sbjct: 509 IHCHILRKGLL-------DTVIQNELVDVYGKCRNMGYATRVFESI--KGKDVVSWTSMI 559
Query: 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQ 491
S + NG ++A+ LF +M + + ++ L C L A A L+AL GR+IH Y+LR
Sbjct: 560 SSSALNGNESEAVELFRRMVETG--LSADSVALLCILSAAASLSALNKGREIHCYLLRKG 617
Query: 492 YEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAF 551
+ L +A ++DMY+ GD+ +A+ VFD ++++ ++ +TS++ YGMHG G A F
Sbjct: 618 F-CLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELF 676
Query: 552 DQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611
D+MR E ++PD ++FL LLYACSH+G++D+G + M E+ + EHY C+VD+LGR
Sbjct: 677 DKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGR 736
Query: 612 ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671
AN + EA E ++ M EPT +W ALL CR H+ E+GE+AA RLLELE + G+ L+
Sbjct: 737 ANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLV 796
Query: 672 SNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEIL 731
SN++A GRW DV ++R+ MK +G++K PGCSW++ F D++HP+S++IYE L
Sbjct: 797 SNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKL 856
Query: 732 AGLVQRI-KAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKN 790
+ + +++ + +GYV T F LH+VD+ EK +L HSE++A+AYG+L T +RITKN
Sbjct: 857 SEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKN 916
Query: 791 LRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
LR+C DCH+ +S + +I++RD+NRFHHF+ G C+C W
Sbjct: 917 LRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust.
Identities = 292/840 (34%), Positives = 455/840 (54%), Gaps = 49/840 (5%)
Query: 13 SKTPLTLNHLFTNIKLFSVT-------TTPCIKITSLLLRQCKSLTQVYL---IHQQIIV 62
S+ L L T I++ S T T PC+ ++ C ++ V + +H ++
Sbjct: 162 SRNELYDEVLETFIEMISTTDLLPDHFTYPCV------IKACAGMSDVGIGLAVHGLVVK 215
Query: 63 QNLTH--VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAF 120
L + L++ Y +H + AL L I P ++ WN++IR + +F
Sbjct: 216 TGLVEDVFVGNALVSFYGTHGFVTDALQLFD-IMPER-NLVSWNSMIRVFSDNGFSEESF 273
Query: 121 RLFLQMMRR----GWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNAL 176
L +MM + PD T VL C G VH D + + NAL
Sbjct: 274 LLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNAL 333
Query: 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM-TGDVK 235
M MY++C ++ A+ +F ++VSWNT+V ++ GD G + +M G
Sbjct: 334 MDMYSKCGCITNAQMIFKMNNNK---NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 390
Query: 236 VQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295
V+ D V+++NA+ C K+ K+ F V + + NA V Y++ GS
Sbjct: 391 VKADEVTILNAVPVCFHESFLPSLKELHCYS-LKQEF----VYNELVANAFVASYAKCGS 445
Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
A +F +R + V +W+A+I G+AQ +LD QM+ GL P+ T+ S
Sbjct: 446 LSYAQRVFHGIRSKTVN----SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 501
Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
LLS C+ + +L LGKE H + I+ L DL V +++ +Y C + + +FD
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLE------RDLFVYLSVLSLYIHCGELCTVQALFD 555
Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
A+ +++ + +W +I Y QNG + AL +F QM ++ ++ AC+ L
Sbjct: 556 AM--EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYG--IQLCGISMMPVFGACSLLP 611
Query: 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535
+LR GR+ HAY L++ E F+A LIDMY+++G I + VF+ LK+++ SW +++
Sbjct: 612 SLRLGREAHAYALKHLLED-DAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 670
Query: 536 TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595
GYG+HGL +A F++M++ G PD +TFL +L AC+HSG++ +GL+Y D M FG+
Sbjct: 671 MGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGL 730
Query: 596 SARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVALLNGCRIHANVELGELAA 654
+HYAC++D+LGRA +LD+A+ ++ E M E IW +LL+ CRIH N+E+GE A
Sbjct: 731 KPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVA 790
Query: 655 NRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATF 714
+L ELE EK +Y LLSN+YA G+W+DV ++R M ++K GCSW++ +F
Sbjct: 791 AKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSF 850
Query: 715 FVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAY 774
VG+R ++I + + L +I MGY P T HD+ +EEK + L HSEKLAL Y
Sbjct: 851 VVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTY 910
Query: 775 GILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
G++ T+ GT IR+ KNLRIC DCH+A IS ++ EI++RD+ RFHHFK G C+C YW
Sbjct: 911 GLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| 359489786 | 852 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.963 | 0.668 | 0.0 | |
| 147865382 | 871 | hypothetical protein VITISV_018821 [Viti | 0.984 | 0.942 | 0.667 | 0.0 | |
| 449438556 | 855 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.948 | 0.642 | 0.0 | |
| 356552027 | 986 | PREDICTED: pentatricopeptide repeat-cont | 0.980 | 0.829 | 0.646 | 0.0 | |
| 15237421 | 850 | pentatricopeptide repeat-containing prot | 0.965 | 0.947 | 0.596 | 0.0 | |
| 297807711 | 850 | pentatricopeptide repeat-containing prot | 0.965 | 0.947 | 0.589 | 0.0 | |
| 358347043 | 833 | Pentatricopeptide repeat-containing prot | 0.953 | 0.954 | 0.578 | 0.0 | |
| 115457318 | 890 | Os04g0218100 [Oryza sativa Japonica Grou | 0.947 | 0.887 | 0.564 | 0.0 | |
| 21741755 | 897 | OSJNBa0060B20.9 [Oryza sativa Japonica G | 0.947 | 0.880 | 0.564 | 0.0 | |
| 242087005 | 886 | hypothetical protein SORBIDRAFT_09g00456 | 0.947 | 0.891 | 0.557 | 0.0 |
| >gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein At5g16860-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/854 (66%), Positives = 672/854 (78%), Gaps = 33/854 (3%)
Query: 8 FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH 67
P LK K PL LF FS T + +TS L QCKSL LIHQQ++VQ L H
Sbjct: 5 LPRLKPKPPL----LFLTTFFFS-TASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPH 59
Query: 68 VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
P+H+I+ Y++ N+P+ ALS+L+R+ PS +VFWWN LIRR+V L ++ +L+ +M
Sbjct: 60 -DPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQ 118
Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
R GW PD YTFPFVLKACGE+PS RCG+SVHAV+ +SGF+ NVFV N L++MY RC
Sbjct: 119 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 178
Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
ARQ+FDEM + G+ D+VSWN+IVAAY Q GD+ + +F RMT D+ ++ D VSLVN L
Sbjct: 179 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 238
Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
ACAS+G WSRGKQ CGMMEEA KVFERMKVKDVV
Sbjct: 239 PACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 298
Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
SWNAMVTGYS+IG F+DA LF+K+R+E ++LNVVTWSAVIAGYAQRG G EALDVFRQM
Sbjct: 299 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358
Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDM 400
+ CG EPNVVTLVSLLSGCA G LL GKETHC+ IK +L++D + P DDLMVINALIDM
Sbjct: 359 RLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 418
Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
Y+KCKS AR MFD I PK+R V TWTV+IG +Q+G AN+AL LF QM Q D V PN
Sbjct: 419 YSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPN 478
Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
AFT+SCALMACARL ALRFGRQIHAYVLRN++E + FVANCLIDMYS+SGD+D ARVVF
Sbjct: 479 AFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVF 538
Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
DN+ QRN VSWTSLMTGYGMHG G++A F +M+K GL PDGVTF+V+LYACSHSGMVD
Sbjct: 539 DNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVD 598
Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
QG+ YF+ M+K+FG+ AEHYAC+VDLL RA RLDEA+ELI GMPM+PTP +WVALL+
Sbjct: 599 QGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 658
Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
CR++ANVELGE AAN+LLELES DGSYTLLSNIYANA WKDVARIR LMK+TG+KKRP
Sbjct: 659 CRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRP 718
Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
GCSWVQG++GTATFF GD +HP SQ+IY++L L+QRIKA+GYVP FALHDVDDEEKG
Sbjct: 719 GCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKG 778
Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
DLL EHSEKLALAYGILTTAPG PIRITKNLR CGDCHSA T+IS+II HEII+RDS+RF
Sbjct: 779 DLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRF 838
Query: 821 HHFKEGSCTCKGYW 834
HHFK GSC+C+GYW
Sbjct: 839 HHFKNGSCSCRGYW 852
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/854 (66%), Positives = 670/854 (78%), Gaps = 33/854 (3%)
Query: 8 FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH 67
P LK K PL LF FS T + +TS L QCKSL L HQQ++VQ L H
Sbjct: 24 LPRLKPKPPL----LFLTTFFFS-TASSTTDLTSTLFHQCKSLASAELTHQQLLVQGLPH 78
Query: 68 VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
P+H+I+ Y++ N+P+ ALS+L+R+ PS +VFWWN LIRR+V L ++ +L+ +M
Sbjct: 79 -DPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQ 137
Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
R GW PD YTFPFVLKACGE+PS RCG+SVHAV+ +SGF+ NVFV N L++MY RC
Sbjct: 138 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 197
Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
ARQ+FDEM + G+ D+VSWN+IVAAY Q GD+ + +F RMT D+ ++ D VSLVN L
Sbjct: 198 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 257
Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
ACAS+G WSRGKQ CGMMEEA KVFERMKVKDVV
Sbjct: 258 PACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVV 317
Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
SWNAMVTGYS+IG F+DA LF+K+R+E ++LNVVTWSAVIAGYAQRG G EALDVFRQM
Sbjct: 318 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 377
Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMVINALIDM 400
CG EPNVVTLVSLLSGCAS G LL GKETHC+ IK +L++D + P DDLMVINALIDM
Sbjct: 378 LLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 437
Query: 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460
Y+KCKS AR MFD I PK+R V TWTV+IG +Q+G AN+AL LF QM Q D V PN
Sbjct: 438 YSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPN 497
Query: 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520
AFT+SCALMACARL ALRFGRQIHAYVLRN++E + FVANCLIDMYS+SGD+D ARVVF
Sbjct: 498 AFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVF 557
Query: 521 DNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580
DN+ QRN VSWTSLMTGYGMHG G++A F +M+K L PDGVTF+V+LYACSHSGMVD
Sbjct: 558 DNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVD 617
Query: 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNG 640
QG+ YF+ M+K+FG+ AEHYAC+VDLL RA RLDEA+ELI GMPM+PTP +WVALL+
Sbjct: 618 QGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 677
Query: 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRP 700
CR++ANVELGE AAN+LLELES DGSYTLLSNIYANA WKDVARIR LMK+TG+KKRP
Sbjct: 678 CRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRP 737
Query: 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKG 760
GCSWVQG++GTATFF GD +HP SQ+IY++L L+QRIKA+GYVP FALHDVDDEEKG
Sbjct: 738 GCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKG 797
Query: 761 DLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRF 820
DLL EHSEKLALAYGILTTAPG PIRITKNLR CGDCHSA T+IS+II HEII+RDS+RF
Sbjct: 798 DLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRF 857
Query: 821 HHFKEGSCTCKGYW 834
HHFK GSC+C+GYW
Sbjct: 858 HHFKNGSCSCRGYW 871
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16860-like [Cucumis sativus] gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16860-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/844 (64%), Positives = 655/844 (77%), Gaps = 33/844 (3%)
Query: 22 LFTNIKLFSVTTT--PCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVS 79
L T++ +S TT P I + SLL RQCK+L L HQQI V T + S+ + AY+
Sbjct: 14 LITSVHFYSTFTTSPPTIPLISLL-RQCKTLINAKLAHQQIFVHGFTEMF-SYAVGAYIE 71
Query: 80 HNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP 139
A + A+SLLQR+ PS +VFWWNALIRR+V+L L D+ + QM R GW PD YTFP
Sbjct: 72 CGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFP 131
Query: 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP 199
FVLKACGE+PS R G+SVHA++C++G SNVF+CN+++AMY RC L A Q+FDE+ +
Sbjct: 132 FVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLER 191
Query: 200 GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG--DVKVQGDGVSLVNALSACASLGTWS 257
I DIVSWN+I+AAY Q G + L + RM +K++ D ++LVN L ACAS+
Sbjct: 192 KIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQ 251
Query: 258 RGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
GKQ C M EA KVFE +K KDVVSWNAMVTGYS
Sbjct: 252 HGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYS 311
Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
+IGSF+ A +LFK M++E++KL+V+TWSAVIAGYAQ+GHG EALDVFRQMQ GLEPNVV
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVV 371
Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVD-GSHPDDLMVINALIDMYAKCKSVDVA 410
TL SLLSGCASVGALL GK+TH Y IK +L+++ DDL+V+N LIDMYAKCKS VA
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVA 431
Query: 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470
R +FD+I K+++V TWTVMIG Y+Q+G ANDAL LF Q+F+Q +KPNAFTLSCALMA
Sbjct: 432 RSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491
Query: 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
CARL LR GRQ+HAY LRN+ E + +V NCLIDMYS+SGDID AR VFDN+K RNVVS
Sbjct: 492 CARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS 551
Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
WTSLMTGYGMHG G++A FDQM+K G A DG+TFLV+LYACSHSGMVDQG+ YF M
Sbjct: 552 WTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMV 611
Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
K FGI+ AEHYAC+VDLLGRA RL+EA+ELI+ M MEPT ++WVALL+ RIHAN+ELG
Sbjct: 612 KGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELG 671
Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
E AA++L EL +E DGSYTLLSN+YANA RWKDVARIRSLMKHTG++KRPGCSW+QGK+
Sbjct: 672 EYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKS 731
Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
T TFFVGDR+HP+S++IY +L L++RIK MGYVPQTSFALHDVDDEEKGDLLFEHSEKL
Sbjct: 732 TTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 791
Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
A+AYGILTTAPG PIRI KNLRICGDCHSA+T+ISMII+HEI+LRDS+RFHHFK+GSC+C
Sbjct: 792 AVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSC 851
Query: 831 KGYW 834
+ YW
Sbjct: 852 RSYW 855
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16860-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/855 (64%), Positives = 654/855 (76%), Gaps = 37/855 (4%)
Query: 8 FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNLTH 67
FP+ KSK L FTN +L S T P IT+L ++C SL L+HQQ I+Q L
Sbjct: 141 FPI-KSKL---LQSQFTNTRLLSCATIP---ITAL--KECNSLAHAKLLHQQSIMQGLLF 191
Query: 68 VPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMM 127
++LI Y++ N+ + A+ LL+R+ PSP SVFWWN LIRRA+ L P + F L+ QM
Sbjct: 192 HLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMK 251
Query: 128 RRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLS 187
GW PD YTFPFV KAC L S G+S+HA + SGF SNVFVCNA+++MY +C L
Sbjct: 252 SLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALR 311
Query: 188 YARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247
+A +FD++ GI D+VSWN++V+AY + DA L LF +MT + D +SLVN L
Sbjct: 312 HAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371
Query: 248 SACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVV 281
ACASL RG+Q CG MEEA KVF+RMK KDVV
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVV 431
Query: 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341
SWNAMVTGYS+ G E A +LF++M +EN++L+VVTW+AVI GYAQRG G EALDVFRQM
Sbjct: 432 SWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491
Query: 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP--DDLMVINALID 399
CG PNVVTLVSLLS C SVGALL GKETHCY IK +L++DG P DDL VIN LID
Sbjct: 492 CDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLID 551
Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
MYAKC+S +VAR MFD+++PK+RDV TWTVMIG Y+Q+G AN+AL LF MF+ DK +KP
Sbjct: 552 MYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKP 611
Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519
N FTLSCAL+ACARLAALRFGRQ+HAYVLRN Y ++ FVANCLIDMYS+SGD+DTA++V
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIV 671
Query: 520 FDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579
FDN+ QRN VSWTSLMTGYGMHG G+ A FD+MRK L PDG+TFLV+LYACSHSGMV
Sbjct: 672 FDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMV 731
Query: 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639
D G+ +F+ MSK+FG+ EHYAC+VDL GRA RL EA++LI MPMEPTP++WVALL+
Sbjct: 732 DHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLS 791
Query: 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKR 699
CR+H+NVELGE AANRLLELES DGSYTLLSNIYANA RWKDVARIR MK TG+KKR
Sbjct: 792 ACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKR 851
Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK 759
PGCSW+QG++G ATF+VGDR+HPQSQ+IYE LA L+QRIKA+GYVPQTSFALHDVDDEEK
Sbjct: 852 PGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEK 911
Query: 760 GDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNR 819
GDLLFEHSEKLALAYGILT P PIRITKNLRICGDCHSAIT+IS II HEIILRDS+R
Sbjct: 912 GDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSR 971
Query: 820 FHHFKEGSCTCKGYW 834
FHHFK GSC+CKGYW
Sbjct: 972 FHHFKNGSCSCKGYW 986
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana] gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/847 (59%), Positives = 621/847 (73%), Gaps = 42/847 (4%)
Query: 20 NHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQ-----IIVQNLTHVPPSHLI 74
+H + + LFS T+ P +IT + +CK+++QV LIHQ+ I+ NLT SHLI
Sbjct: 14 SHQYIKVSLFS-TSAP--EITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT----SHLI 66
Query: 75 AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
+ Y+S S A+SLL+R PS V+ WN+LIR + LF M W PD
Sbjct: 67 STYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPD 126
Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
YTFPFV KACGE+ S RCG S HA+ +GF SNVFV NAL+AMY+RC +LS AR++FD
Sbjct: 127 NYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFD 186
Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
EM + D+VSWN+I+ +YA+ G + L +F+RMT + + D ++LVN L CASLG
Sbjct: 187 EM---SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243
Query: 255 TWSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVT 288
T S GKQ CGMM+EA VF M VKDVVSWNAMV
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303
Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
GYS+IG FEDA LF+KM++E +K++VVTWSA I+GYAQRG G+EAL V RQM G++P
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363
Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV-DGSHPDDLMVINALIDMYAKCKSV 407
N VTL+S+LSGCASVGAL+ GKE HCY IK + + H D+ MVIN LIDMYAKCK V
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV 423
Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
D AR MFD+++PK RDV TWTVMIG YSQ+G AN AL L +MF++D +PNAFT+SCA
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483
Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
L+ACA LAALR G+QIHAY LRNQ + FV+NCLIDMY++ G I AR+VFDN+ +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543
Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
V+WTSLMTGYGMHG G++A FD+MR+ G DGVT LV+LYACSHSGM+DQG++YF+
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603
Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
M FG+S EHYAC+VDLLGRA RL+ A+ LIE MPMEP P++WVA L+ CRIH V
Sbjct: 604 RMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKV 663
Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
ELGE AA ++ EL S DGSYTLLSN+YANAGRWKDV RIRSLM+H GVKKRPGCSWV+G
Sbjct: 664 ELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723
Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
+GT TFFVGD+THP +++IY++L +QRIK +GYVP+T FALHDVDDEEK DLLFEHS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783
Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
EKLALAYGILTT G IRITKNLR+CGDCH+A T++S II+H+IILRDS+RFHHFK GS
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGS 843
Query: 828 CTCKGYW 834
C+CKGYW
Sbjct: 844 CSCKGYW 850
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/847 (58%), Positives = 622/847 (73%), Gaps = 42/847 (4%)
Query: 20 NHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQ-----IIVQNLTHVPPSHLI 74
+H + LFS T ++IT + +CK+++QV LIHQ+ I+ NLT SHLI
Sbjct: 14 SHQHLKVSLFS---TSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT----SHLI 66
Query: 75 AAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134
+ Y+S S A+SLL+R PS V+ WN+LIR + F M W PD
Sbjct: 67 STYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPD 126
Query: 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFD 194
YTFPFV KACGE+ S RCG S HA+ +GF SNVFV NAL+AMY+RC +LS AR++FD
Sbjct: 127 NYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFD 186
Query: 195 EMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254
EM + D+VSWN+I+ +YA+ G + L +F++MT + + D ++LVN L CAS+G
Sbjct: 187 EM---PVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVG 243
Query: 255 TWSRGKQ------------------C--------GMMEEAKKVFERMKVKDVVSWNAMVT 288
T S GKQ C GMM+EA VF M VKDVVSWNAMV
Sbjct: 244 TRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVA 303
Query: 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348
GYS+IG FEDA LF++M++E +K++VVTWSA I+GYAQRG G+EAL V RQM G++P
Sbjct: 304 GYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363
Query: 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV-DGSHPDDLMVINALIDMYAKCKSV 407
N VTL+S+LSGCASVGAL+ GKE HCY IK + + H D+ MVIN LIDMYAKCK V
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKV 423
Query: 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467
D+AR MFD+++PK RDV TWTVMIG YSQ+G AN AL L +MF++D +PNAFT+SCA
Sbjct: 424 DIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483
Query: 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527
L+ACA LAAL G+QIHAY LRNQ + FV+NCLIDMY++ GDI AR+VFDN+ ++N
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKN 543
Query: 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
V+WTSLMTGYGMHG G++A F++MR+ G DGVT LV+LYACSHSGM+DQG++YF+
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603
Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANV 647
M +FG+S EHYAC+VDLLGRA RL+ A+ LIE MPMEP P++WVALL+ CRIH V
Sbjct: 604 RMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKV 663
Query: 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQG 707
ELGE AA ++ EL S DGSYTLLSN+YANAGRWKDV RIRSLM+H G+KKRPGCSWV+G
Sbjct: 664 ELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEG 723
Query: 708 KEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHS 767
+GT TFFVGD+THP +++IY++L+ +QRIK +GYVP+T FALHDVDDEEK DLLFEHS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783
Query: 768 EKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGS 827
EKLALAYGILTT G IRITKNLR+CGDCH+A T++S II+HEIILRDS+RFHHFK G
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGL 843
Query: 828 CTCKGYW 834
C+CKGYW
Sbjct: 844 CSCKGYW 850
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/861 (57%), Positives = 615/861 (71%), Gaps = 66/861 (7%)
Query: 8 FPLLKSKTPLTLNHLFTNIKLFSVTTTPCIKITSLLLRQCKSLTQVYLIHQQIIVQNL-- 65
FPL SK PL +N N+ L+ +T +QCK+LTQ L+HQQ I+
Sbjct: 5 FPLFNSKPPLLINT--HNLLLYHSSTIS--------KQQCKTLTQAKLLHQQYIINGHLL 54
Query: 66 -THVPPSHLIAAYVSHNAPSPALSLLQR-ISPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123
++ ++LI Y+S N+ + A+ LL++ ++PS SV+WWN LIR A+ P+ A RLF
Sbjct: 55 NSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLF 114
Query: 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARC 183
+M W PD YTFPFV KACGE+ + G+S+H + GF+SNVFVCNA+++MY +C
Sbjct: 115 RRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKC 174
Query: 184 DTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL 243
+ +AR++FDE+ GICD V+WN+IV+ Y+ + LF MT + D V +
Sbjct: 175 KAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGV 234
Query: 244 VNALSACASLGTWSRGKQ--------------------------CGMMEEAKKVFERMKV 277
VN L C LG G+Q CG ME+A KVFERM+
Sbjct: 235 VNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRF 294
Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337
KDVV+WNAMVTGYS+ G FEDA +LF KMR+E ++ +VVTWS+VI+GYAQRG G EA+DV
Sbjct: 295 KDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDV 354
Query: 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH---PDDLMVI 394
FRQM C PNVVTL+SLLS CASVGALL GKETHCY++K +L G H DDL VI
Sbjct: 355 FRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILK--GEHNDDTDDLAVI 412
Query: 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQD 454
NALIDMYAKCKS++VAR MFD I PK+RDV TWTVMIG Y+Q+G AN AL LF +MF+ D
Sbjct: 413 NALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKID 472
Query: 455 KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-NQYEMLIPFVANCLIDMYSRSGDI 513
+ PN FT+SC LMACARLAAL+FG+QIHAYVLR ++ + + FVANCLIDMYS+SGD+
Sbjct: 473 NCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDV 532
Query: 514 DTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573
DTA+VVFD++ +RN VSWTSL+TGYGMHG + A FD+MRKE L DG+TFLV+LYAC
Sbjct: 533 DTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYAC 592
Query: 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633
SHSGM +FG+ EHYAC+VDLLGRA RL EA+ LI MP+EPTP++
Sbjct: 593 SHSGM-------------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVV 639
Query: 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693
W+ALL+ CRIH+N EL E AA +LLEL+++ DG+YTLLSNIYANA RWKDVARI LMK
Sbjct: 640 WIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKR 699
Query: 694 TGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHD 753
TG+KK PG SWV+G++G TF+VGDRTH QSQKIYE LA L++RIKA +F+LHD
Sbjct: 700 TGIKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKA-------NFSLHD 752
Query: 754 VDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEII 813
VDDEEKGD L EHSEKLALAY ILT PG PIRITKNLRICGD HSAIT+ISMI+ HEII
Sbjct: 753 VDDEEKGDQLSEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEII 812
Query: 814 LRDSNRFHHFKEGSCTCKGYW 834
LRDS+RFH FK GSC+CKGYW
Sbjct: 813 LRDSSRFHQFKNGSCSCKGYW 833
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group] gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/850 (56%), Positives = 617/850 (72%), Gaps = 60/850 (7%)
Query: 43 LLRQCKSLTQVYLIHQQIIVQ------------NLTHVPP----------SHLIAAYVSH 80
LL++CKS V+ IHQQII +L +P + ++A+Y++
Sbjct: 43 LLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLAC 102
Query: 81 NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
A AL +L+R++PSP WWN LIR ++ D+A + +M+R G PD +T P
Sbjct: 103 GATDYALLVLERVTPSP--AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 160
Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
VLKACGELPS RCGS+ H +IC +GF+SNVF+CNAL+AMY+RC +L A +FDE+ Q G
Sbjct: 161 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 220
Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-----GDVKVQGDGVSLVNALSACASLGT 255
I D++SWN+IV+A+ +S +A L LF++MT + D +S+VN L AC SL
Sbjct: 221 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 280
Query: 256 WSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTG 289
+ K+ CG+ME A KVF M+ KDVVSWNAMV G
Sbjct: 281 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 340
Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
YS+ G+FE AF LFK MR+EN+ L+VVTW+AVIAGY+QRG HEAL++FRQM F G PN
Sbjct: 341 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400
Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKR-VLSVD---GSHPDDLMVINALIDMYAKCK 405
VT++S+LS CAS+GA G E H Y++K +L++D G +DLMV NALIDMY+KC+
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460
Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
S AR +FD I + R+V TWTVMIG ++Q G +NDAL LF +M + V PNA+T+S
Sbjct: 461 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 520
Query: 466 CALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
C LMACA LAA+R G+QIHAYVLR+ +YE FVANCLIDMYS+ GD+DTAR VFD++
Sbjct: 521 CILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS 580
Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
Q++ +SWTS+MTGYGMHG G +A FD+MRK G PD +TFLV+LYACSH GMVDQGL
Sbjct: 581 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 640
Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
YFDSMS ++G++ RAEHYAC +DLL R+ RLD+A ++ MPMEPT ++WVALL+ CR+H
Sbjct: 641 YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVH 700
Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
+NVEL E A N+L+E+ +E DGSYTL+SNIYA AGRWKDVARIR LMK +G+KKRPGCSW
Sbjct: 701 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 760
Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
VQG++GTA+FFVGDR+HP S +IY +L L+ RIKAMGYVP+T+FALHDVD+EEK +LL
Sbjct: 761 VQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLV 820
Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA T+IS I++HEI++RD +RFHHFK
Sbjct: 821 EHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFK 880
Query: 825 EGSCTCKGYW 834
GSC+C GYW
Sbjct: 881 NGSCSCGGYW 890
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/850 (56%), Positives = 617/850 (72%), Gaps = 60/850 (7%)
Query: 43 LLRQCKSLTQVYLIHQQIIVQ------------NLTHVPP----------SHLIAAYVSH 80
LL++CKS V+ IHQQII +L +P + ++A+Y++
Sbjct: 50 LLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLAC 109
Query: 81 NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
A AL +L+R++PSP WWN LIR ++ D+A + +M+R G PD +T P
Sbjct: 110 GATDYALLVLERVTPSP--AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 167
Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
VLKACGELPS RCGS+ H +IC +GF+SNVF+CNAL+AMY+RC +L A +FDE+ Q G
Sbjct: 168 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 227
Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMT-----GDVKVQGDGVSLVNALSACASLGT 255
I D++SWN+IV+A+ +S +A L LF++MT + D +S+VN L AC SL
Sbjct: 228 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 287
Query: 256 WSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTG 289
+ K+ CG+ME A KVF M+ KDVVSWNAMV G
Sbjct: 288 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 347
Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
YS+ G+FE AF LFK MR+EN+ L+VVTW+AVIAGY+QRG HEAL++FRQM F G PN
Sbjct: 348 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407
Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKR-VLSVD---GSHPDDLMVINALIDMYAKCK 405
VT++S+LS CAS+GA G E H Y++K +L++D G +DLMV NALIDMY+KC+
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467
Query: 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465
S AR +FD I + R+V TWTVMIG ++Q G +NDAL LF +M + V PNA+T+S
Sbjct: 468 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 527
Query: 466 CALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524
C LMACA LAA+R G+QIHAYVLR+ +YE FVANCLIDMYS+ GD+DTAR VFD++
Sbjct: 528 CILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS 587
Query: 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLK 584
Q++ +SWTS+MTGYGMHG G +A FD+MRK G PD +TFLV+LYACSH GMVDQGL
Sbjct: 588 QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 647
Query: 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644
YFDSMS ++G++ RAEHYAC +DLL R+ RLD+A ++ MPMEPT ++WVALL+ CR+H
Sbjct: 648 YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVH 707
Query: 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSW 704
+NVEL E A N+L+E+ +E DGSYTL+SNIYA AGRWKDVARIR LMK +G+KKRPGCSW
Sbjct: 708 SNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSW 767
Query: 705 VQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLF 764
VQG++GTA+FFVGDR+HP S +IY +L L+ RIKAMGYVP+T+FALHDVD+EEK +LL
Sbjct: 768 VQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLV 827
Query: 765 EHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFK 824
EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA T+IS I++HEI++RD +RFHHFK
Sbjct: 828 EHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFK 887
Query: 825 EGSCTCKGYW 834
GSC+C GYW
Sbjct: 888 NGSCSCGGYW 897
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor] gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/852 (55%), Positives = 607/852 (71%), Gaps = 62/852 (7%)
Query: 43 LLRQCKSLTQVYLIHQQIIVQNLTHVP-----------PSH-----------LIAAYVSH 80
LL++C+S+ V IHQ+II L P PSH ++A+Y++
Sbjct: 37 LLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLAC 96
Query: 81 NAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPF 140
A S ALS+L+R+ PSP WWN L+R + D A + +M+R G PD +T P+
Sbjct: 97 GATSDALSVLERVVPSP--AVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPY 154
Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG 200
LKACGELPS R GS+ H +IC +GF+SNVFVCNAL+AMY+R +L A +FDE+ + G
Sbjct: 155 ALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKG 214
Query: 201 ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-----DGVSLVNALSACASLGT 255
I D++SWN+IVAA+ + + L LF+ MT V + D +S+VN L ACASL
Sbjct: 215 IDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKA 274
Query: 256 WSRGKQ--------------------------CGMMEEAKKVFERMKVKDVVSWNAMVTG 289
+ K+ CG M++A VF M+ KDVVSWNAMVTG
Sbjct: 275 LPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTG 334
Query: 290 YSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349
Y++ G F AF LFK MR+EN+ L+V+TWSAVIAGYAQRG+G EALD F+QM G EPN
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394
Query: 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVL------SVDGSHPDDLMVINALIDMYAK 403
VT++SLLS CAS+GAL G ETH Y++K+ L +DL+V NALIDMY+K
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSK 454
Query: 404 CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT 463
C+S AR +F++I + R+V TWTVMIG Y+Q G +NDAL LF +M + V PNA+T
Sbjct: 455 CRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYT 514
Query: 464 LSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522
+SC LMACA L++LR G+QIHAYV R+ +YE + FVANCLIDMYS+ GD+DTAR VFD+
Sbjct: 515 ISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDS 574
Query: 523 LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
+ +RN VSWTS+M+GYGMHG G +A FD+M+K G PD ++FLVLLYACSHSGMVDQG
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634
Query: 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642
L YFD M ++G+ A A+HYAC++DLL R+ RLD+A + I+ MPMEP+ IWVALL+ CR
Sbjct: 635 LDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACR 694
Query: 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGC 702
+H+NVEL E A N+L+ +++E DGSYTL+SNIYA A RWKDVARIR LMK +G+KKRPGC
Sbjct: 695 VHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGC 754
Query: 703 SWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDL 762
SWVQGK+GTA+FFVGDR+HP S +IY +L L+ RIK MGYVP+T+FALHDVDDEEK +L
Sbjct: 755 SWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNL 814
Query: 763 LFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHH 822
L EHSEKLALAYG+LTT+PG PIRITKNLR+CGDCHSA +IS I++HEII+RDS+RFHH
Sbjct: 815 LTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHH 874
Query: 823 FKEGSCTCKGYW 834
FK GSC+C GYW
Sbjct: 875 FKNGSCSCGGYW 886
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.688 | 0.675 | 0.655 | 2.4e-211 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.606 | 0.582 | 0.378 | 3.3e-130 | |
| TAIR|locus:2115130 | 691 | AT4G37170 "AT4G37170" [Arabido | 0.670 | 0.808 | 0.380 | 3.4e-128 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.527 | 0.556 | 0.414 | 1.9e-127 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.669 | 0.709 | 0.385 | 1.7e-122 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.851 | 0.797 | 0.365 | 8.3e-122 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.806 | 0.908 | 0.356 | 3.2e-120 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.649 | 0.547 | 0.401 | 5.2e-119 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.733 | 0.928 | 0.4 | 1.6e-118 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.775 | 0.870 | 0.349 | 7.6e-118 |
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2043 (724.2 bits), Expect = 2.4e-211, P = 2.4e-211
Identities = 377/575 (65%), Positives = 452/575 (78%)
Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
+CGMM+EA VF M VKDVVSWNAMV GYS+IG FEDA LF+KM++E +K++VVTWSA
Sbjct: 276 KCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSA 335
Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
I+GYAQRG G+EAL V RQM G++PN VTL+S+LSGCASVGAL+ GKE HCY IK
Sbjct: 336 AISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYP 395
Query: 381 LSV-DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
+ + H D+ MVIN LIDMYAKCK VD AR MFD+++PK RDV TWTVMIG YSQ+G
Sbjct: 396 IDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455
Query: 440 ANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFV 499
AN AL L +MF++D +PNAFT G+QIHAY LRNQ + FV
Sbjct: 456 ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFV 515
Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
+NCLIDMY++ G I AR+VFDN+ +N V+WTSLMTGYGMHG G++A FD+MR+ G
Sbjct: 516 SNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGF 575
Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
DGVT LV+LYACSHSGM+DQG++YF+ M FG+S EHYAC+VDLLGRA RL+ A+
Sbjct: 576 KLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAAL 635
Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
LIE MPMEP P++WVA L+ CRIH VELGE AA ++ EL S DGSYTLLSN+YANAG
Sbjct: 636 RLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAG 695
Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
RWKDV RIRSLM+H GVKKRPGCSWV+G +GT TFFVGD+THP +++IY++L +QRIK
Sbjct: 696 RWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIK 755
Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
+GYVP+T FALHDVDDEEK DLLFEHSEKLALAYGILTT G IRITKNLR+CGDCH+
Sbjct: 756 DIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHT 815
Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
A T++S II+H+IILRDS+RFHHFK GSC+CKGYW
Sbjct: 816 AFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 3.3e-130, Sum P(2) = 3.3e-130
Identities = 198/523 (37%), Positives = 311/523 (59%)
Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETH 373
NVV+W+A+I+G+ Q EA+D+F +M+ G+ PN T +L+ + E H
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVH 416
Query: 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS 433
+K ++ V AL+D Y K V+ A +F I K D+ W+ M+
Sbjct: 417 AQVVKT------NYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK--DIVAWSAMLAG 468
Query: 434 YSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXX-XXXXXXXXFGRQIHAYVLRNQY 492
Y+Q G A+ +F ++ + +KPN FT G+Q H + ++++
Sbjct: 469 YAQTGETEAAIKMFGELTKGG--IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL 526
Query: 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552
+ + V++ L+ MY++ G+I++A VF +++++VSW S+++GY HG KA F
Sbjct: 527 DSSL-CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFK 585
Query: 553 QMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612
+M+K + DGVTF+ + AC+H+G+V++G KYFD M ++ I+ EH +C+VDL RA
Sbjct: 586 EMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRA 645
Query: 613 NRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672
+L++A+++IE MP IW +L CR+H ELG LAA +++ ++ E +Y LLS
Sbjct: 646 GQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLS 705
Query: 673 NIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILA 732
N+YA +G W++ A++R LM VKK PG SW++ K T +F GDR+HP +IY L
Sbjct: 706 NMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLE 765
Query: 733 GLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLR 792
L R+K +GY P TS+ L D+DDE K +L +HSE+LA+A+G++ T G+P+ I KNLR
Sbjct: 766 DLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLR 825
Query: 793 ICGDCHSAITFISMIINHEIILRDSNRFHHFK-EGSCTCKGYW 834
+CGDCH I I+ I EI++RDSNRFHHF +G C+C +W
Sbjct: 826 VCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 219/575 (38%), Positives = 346/575 (60%)
Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
+CG + +A+KVF+ M +D+ SWN MV GY+ +G E+A LF +M +++ +W+A
Sbjct: 132 KCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDS----YSWTA 187
Query: 321 VIAGYAQRGHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379
++ GY ++ EAL ++ MQ PN+ T+ ++ A+V + GKE H + ++
Sbjct: 188 MVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA 247
Query: 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGG 439
L D ++ ++L+DMY KC +D AR +FD I K DV +WT MI Y ++
Sbjct: 248 GLD------SDEVLWSSLMDMYGKCGCIDEARNIFDKIVEK--DVVSWTSMIDRYFKSSR 299
Query: 440 ANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFV 499
+ +LF ++ + +PN +T G+Q+H Y+ R ++ F
Sbjct: 300 WREGFSLFSELVGSCE--RPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPY-SFA 356
Query: 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
++ L+DMY++ G+I++A+ V D + ++VSWTSL+ G +G D+A FD + K G
Sbjct: 357 SSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGT 416
Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
PD VTF+ +L AC+H+G+V++GL++F S++++ +S ++HY C+VDLL R+ R ++
Sbjct: 417 KPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLK 476
Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
+I MPM+P+ +W ++L GC + N++L E AA L ++E E +Y ++NIYA AG
Sbjct: 477 SVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAG 536
Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
+W++ ++R M+ GV KRPG SW + K F D +HP +I E L L +++K
Sbjct: 537 KWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMK 596
Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
GYVP TS LHDV+DE+K + L HSEKLA+A+ IL+T GT I++ KNLR C DCH
Sbjct: 597 EEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHG 656
Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
AI FIS I +I +RDS RFH F+ G C+C YW
Sbjct: 657 AIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.9e-127, Sum P(2) = 1.9e-127
Identities = 185/446 (41%), Positives = 277/446 (62%)
Query: 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQ 449
DL+ NAL+ Y + A+++F + KN + +W +MI ++NG + L LF
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN--ILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 450 MFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
M ++ +P + G+Q HA +L+ ++ + N LI MY++
Sbjct: 408 MKREG--FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLS-AGNALITMYAK 464
Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
G ++ AR VF + + VSW +L+ G HG G +A +++M K+G+ PD +T L +
Sbjct: 465 CGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTV 524
Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
L ACSH+G+VDQG KYFDSM + I A+HYA ++DLL R+ + +A +IE +P +P
Sbjct: 525 LTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKP 584
Query: 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689
T IW ALL+GCR+H N+ELG +AA++L L E DG+Y LLSN++A G+W++VAR+R
Sbjct: 585 TAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRK 644
Query: 690 LMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSF 749
LM+ GVKK CSW++ + TF V D +HP+++ +Y L L + ++ +GYVP TSF
Sbjct: 645 LMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSF 704
Query: 750 ALHDVD-DEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
LHDV+ D K D+L HSEK+A+A+G++ PGT IRI KNLR CGDCH+ F+S ++
Sbjct: 705 VLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVV 764
Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
+IILRD RFHHF+ G C+C +W
Sbjct: 765 QRDIILRDRKRFHHFRNGECSCGNFW 790
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 223/579 (38%), Positives = 347/579 (59%)
Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENV-KLNVVTWS 319
Q G M+ A FE+M +D+V+WN+M++G+++ G A +F KM ++++ + T +
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283
Query: 320 AVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHC---YT 376
+V++ A E L + +Q + ++VT +SG + AL+ + C T
Sbjct: 284 SVLSACANL----EKLCIGKQ-----IHSHIVTTGFDISGIV-LNALI-SMYSRCGGVET 332
Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436
+R++ G+ + AL+D Y K ++ A+ +F ++ K+RDV WT MI Y Q
Sbjct: 333 ARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIF--VSLKDRDVVAWTAMIVGYEQ 390
Query: 437 NGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLI 496
+G +A+ LF M + +PN++T G+QIH +++ E+
Sbjct: 391 HGSYGEAINLFRSMVGGGQ--RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG-EIYS 447
Query: 497 PFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555
V+N LI MY+++G+I +A FD ++ +R+ VSWTS++ HG ++A F+ M
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507
Query: 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615
EGL PD +T++ + AC+H+G+V+QG +YFD M I HYAC+VDL GRA L
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675
EA E IE MP+EP + W +LL+ CR+H N++LG++AA RLL LE E G+Y+ L+N+Y
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLY 627
Query: 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLV 735
+ G+W++ A+IR MK VKK G SW++ K F V D THP+ +IY + +
Sbjct: 628 SACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIW 687
Query: 736 QRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICG 795
IK MGYVP T+ LHD+++E K +L HSEKLA+A+G+++T T +RI KNLR+C
Sbjct: 688 DEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCN 747
Query: 796 DCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
DCH+AI FIS ++ EII+RD+ RFHHFK+G C+C+ YW
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
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| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 273/746 (36%), Positives = 399/746 (53%)
Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSR---CGSSVHA 159
WN+LI + A F M+ P +T V+ AC LP G VHA
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226
Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
G + N F+ N L+AMY + L+ ++ L G D+V+WNT++++ Q+
Sbjct: 227 YGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSF---GGRDLVTWNTVLSSLCQNEQ 282
Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
L M + V+ D ++ + L AC+ L GK+ + A K +
Sbjct: 283 LLEALEYLREMVLE-GVEPDEFTISSVLPACSHLEMLRTGKE--LHAYALKNGS-LDENS 338
Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
V +A+V Y +F M + L W+A+IAGY+Q H EAL +F
Sbjct: 339 FVG-SALVDMYCNCKQVLSGRRVFDGMFDRKIGL----WNAMIAGYSQNEHDKEALLLFI 393
Query: 340 QMQ-FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
M+ GL N T+ ++ C GA + H + +KR L D V N L+
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD------RDRFVQNTLM 447
Query: 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV- 457
DMY++ +D+A +F + ++RD+ TW MI Y + DAL L +M ++ V
Sbjct: 448 DMYSRLGKIDIAMRIFGKM--EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505
Query: 458 --------KPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509
KPN+ T G++IHAY ++N + V + L+DMY++
Sbjct: 506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAK 564
Query: 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569
G + +R VFD + Q+NV++W ++ YGMHG G +A M +G+ P+ VTF+ +
Sbjct: 565 CGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISV 624
Query: 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP 629
ACSHSGMVD+GL+ F M ++G+ ++HYAC+VDLLGRA R+ EA +L+ MP +
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDF 684
Query: 630 TPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688
W +LL RIH N+E+GE+AA L++LE Y LL+NIY++AG W +R
Sbjct: 685 NKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVR 744
Query: 689 SLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTS 748
MK GV+K PGCSW++ + F GD +HPQS+K+ L L +R++ GYVP TS
Sbjct: 745 RNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTS 804
Query: 749 FALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMII 808
LH+V+++EK LL HSEKLA+A+GIL T+PGT IR+ KNLR+C DCH A FIS I+
Sbjct: 805 CVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIV 864
Query: 809 NHEIILRDSNRFHHFKEGSCTCKGYW 834
+ EIILRD RFH FK G+C+C YW
Sbjct: 865 DREIILRDVRRFHRFKNGTCSCGDYW 890
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| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
Identities = 258/724 (35%), Positives = 409/724 (56%)
Query: 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA---MYARCDTLSYARQLFDEMF 197
+L C L S R +HA + G + + + L+ + + L YA +F +
Sbjct: 39 LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQ 95
Query: 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257
+P +++ WNT+ +A S D L L+ M + + + + L +CA +
Sbjct: 96 EP---NLLIWNTMFRGHALSSDPVSALKLYVCMIS-LGLLPNSYTFPFVLKSCAKSKAFK 151
Query: 258 RGKQ---------C-----------------GMMEEAKKVFERMKVKDVVSWNAMVTGYS 291
G+Q C G +E+A KVF++ +DVVS+ A++ GY+
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351
G E+A LF ++ VK +VV+W+A+I+GYA+ G+ EAL++F+ M + P+
Sbjct: 212 SRGYIENAQKLFDEIP---VK-DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDES 267
Query: 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVAR 411
T+V+++S CA G++ LG++ H + D +L ++NALID+Y+KC ++ A
Sbjct: 268 TMVTVVSACAQSGSIELGRQVHLWID------DHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 412 VMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXX 471
+F+ + K DV +W +IG Y+ +AL LF +M + + PN T
Sbjct: 322 GLFERLPYK--DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET--PNDVTMLSILPAC 377
Query: 472 XXXXXXXFGRQIHAYVLRNQYEML-IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS 530
GR IH Y+ + + + LIDMY++ GDI+ A VF+++ +++ S
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437
Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590
W +++ G+ MHG D + F +MRK G+ PD +TF+ LL ACSHSGM+D G F +M+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497
Query: 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELG 650
+++ ++ + EHY C++DLLG + EA E+I M MEP +IW +LL C++H NVELG
Sbjct: 498 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELG 557
Query: 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEG 710
E A L+++E E GSY LLSNIYA+AGRW +VA+ R+L+ G+KK PGCS ++
Sbjct: 558 ESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 617
Query: 711 TATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 770
F +GD+ HP++++IY +L + ++ G+VP TS L ++++E K L HSEKL
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKL 677
Query: 771 ALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTC 830
A+A+G+++T PGT + I KNLR+C +CH A IS I EII RD RFHHF++G C+C
Sbjct: 678 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSC 737
Query: 831 KGYW 834
YW
Sbjct: 738 NDYW 741
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| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
Identities = 224/558 (40%), Positives = 320/558 (57%)
Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
V D A++ YSR ++A LF++ N L V W+A++AGY Q GH+ L
Sbjct: 449 VSDSFVSTALIDAYSRNRCMKEAEILFER---HNFDL--VAWNAMMAGYTQSHDGHKTLK 503
Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396
+F M G + TL ++ C + A+ GK+ H Y IK + DL V +
Sbjct: 504 LFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIK------SGYDLDLWVSSG 557
Query: 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKL 456
++DMY KC + A+ FD+I P DVA WT MI +NG A +F QM L
Sbjct: 558 ILDMYVKCGDMSAAQFAFDSI-PVPDDVA-WTTMISGCIENGEEERAFHVFSQMRLMGVL 615
Query: 457 VKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516
P+ FT GRQIHA L+ PFV L+DMY++ G ID A
Sbjct: 616 --PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTN-DPFVGTSLVDMYAKCGSIDDA 672
Query: 517 RVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576
+F ++ N+ +W +++ G HG G + F QM+ G+ PD VTF+ +L ACSHS
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636
G+V + K+ SM ++GI EHY+C+ D LGRA + +A LIE M ME + ++
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792
Query: 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696
LL CR+ + E G+ A +LLELE +Y LLSN+YA A +W ++ R++MK V
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852
Query: 697 KKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDD 756
KK PG SW++ K F V DR++ Q++ IY + +++ IK GYVP+T F L DV++
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912
Query: 757 EEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRD 816
EEK L+ HSEKLA+A+G+L+T P TPIR+ KNLR+CGDCH+A+ +I+ + N EI+LRD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972
Query: 817 SNRFHHFKEGSCTCKGYW 834
+NRFH FK+G C+C YW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990
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| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 256/640 (40%), Positives = 375/640 (58%)
Query: 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262
D+ SWN+++A A+SGD+ L+ F+ M + + S A+ AC+SL GKQ
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMR-KLSLYPTRSSFPCAIKACSSLFDIFSGKQT 98
Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
+ VF D+ +A++ YS G EDA +K+ E K N+V+W+++I
Sbjct: 99 ---HQQAFVFGYQS--DIFVSSALIVMYSTCGKLEDA----RKVFDEIPKRNIVSWTSMI 149
Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPN------VVTLVSLLSGCASVGALLLGKETHCYT 376
GY G+ +A+ +F+ + + + + LVS++S C+ V A L + H +
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209
Query: 377 IKRVLSVDGSHPDDLMVINALIDMYAKCKS--VDVARVMFDAIAPKNRDVATWTVMIGSY 434
IKR D + V N L+D YAK V VAR +FD I K+R ++ ++ Y
Sbjct: 210 IKR--GFDRG----VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR--VSYNSIMSVY 261
Query: 435 SQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEM 494
+Q+G +N+A +F ++ + +K+V NA T G+ IH V+R E
Sbjct: 262 AQSGMSNEAFEVFRRLVK-NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320
Query: 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
+ V +IDMY + G ++TAR FD +K +NV SWT+++ GYGMHG KA F M
Sbjct: 321 DV-IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
G+ P+ +TF+ +L ACSH+G+ +G ++F++M FG+ EHY C+VDLLGRA
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439
Query: 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674
L +A +LI+ M M+P IIW +LL CRIH NVEL E++ RL EL+S G Y LLS+I
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHI 499
Query: 675 YANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGL 734
YA+AGRWKDV R+R +MK+ G+ K PG S ++ F +GD HPQ +KIYE LA L
Sbjct: 500 YADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAEL 559
Query: 735 VQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRIC 794
+++ GYV TS HDVD+EEK L HSEKLA+A+GI+ T PG+ + + KNLR+C
Sbjct: 560 NRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619
Query: 795 GDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
DCH+ I IS I++ E ++RD+ RFHHFK+G C+C YW
Sbjct: 620 SDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
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| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1089 (388.4 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 242/692 (34%), Positives = 372/692 (53%)
Query: 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFA 228
N+F N L+ Y++ +S F+++ P D V+WN ++ Y+ SG + +
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKL--PDR-DGVTWNVLIEGYSLSGLVGAAVKAYN 127
Query: 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC-------------------------- 262
M D V+L+ L +S G S GKQ
Sbjct: 128 TMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANV 187
Query: 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI 322
G + +AKKVF + ++ V +N+++ G G EDA LF+ M +++V +W+A+I
Sbjct: 188 GCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSV-----SWAAMI 242
Query: 323 AGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLS 382
G AQ G EA++ FR+M+ GL+ + S+L C +GA+ GK+ H I+
Sbjct: 243 KGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT--- 299
Query: 383 VDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGAND 442
+ D + V +ALIDMY KCK + A+ +FD + KN V +WT M+ Y Q G A +
Sbjct: 300 ---NFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN--VVSWTAMVVGYGQTGRAEE 354
Query: 443 ALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANC 502
A+ +F M Q + P+ +T G Q H + + + V+N
Sbjct: 355 AVKIFLDM--QRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVT-VSNS 411
Query: 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
L+ +Y + GDID + +F+ + R+ VSWT++++ Y G + FD+M + GL PD
Sbjct: 412 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 471
Query: 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622
GVT ++ ACS +G+V++G +YF M+ E+GI HY+C++DL R+ RL+EA+ I
Sbjct: 472 GVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFI 531
Query: 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682
GMP P I W LL+ CR N+E+G+ AA L+EL+ YTLLS+IYA+ G+W
Sbjct: 532 NGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWD 591
Query: 683 DVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMG 742
VA++R M+ VKK PG SW++ K +F D + P +IY L L +I G
Sbjct: 592 SVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNG 651
Query: 743 YVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAIT 802
Y P TSF HDV++ K +L HSE+LA+A+G++ G PIR+ KNLR+C DCH+A
Sbjct: 652 YKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATK 711
Query: 803 FISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
IS + EI++RD+ RFH FK+G+C+C +W
Sbjct: 712 HISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFL5 | PP390_ARATH | No assigned EC number | 0.5962 | 0.9652 | 0.9470 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00026821001 | SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (871 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 834 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-163 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-59 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-58 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-42 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-38 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 613 bits (1581), Expect = 0.0
Identities = 291/733 (39%), Positives = 431/733 (58%), Gaps = 31/733 (4%)
Query: 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHA 159
+F WN L+ + D A L+ +M+ G PD YTFP VL+ CG +P G VHA
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 160 VICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219
+ GF+ +V V NAL+ MY +C + AR +FD M D +SWN +++ Y ++G+
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM---PRRDCISWNAMISGYFENGE 268
Query: 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD 279
GL LF M V D +++ + +SAC LG G++ V + D
Sbjct: 269 CLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGY-----VVKTGFAVD 322
Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339
V N+++ Y +GS+ +A +F +M ++ V+W+A+I+GY + G +AL+ +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYA 378
Query: 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALID 399
M+ + P+ +T+ S+LS CA +G L +G + H ++ ++V NALI+
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK------GLISYVVVANALIE 432
Query: 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP 459
MY+KCK +D A +F I +DV +WT +I N +AL F QM +KP
Sbjct: 433 MYSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT---LKP 487
Query: 460 NAFTLSCALMACARLAALRFGRQIHAYVLRN--QYEMLIPFVANCLIDMYSRSGDIDTAR 517
N+ TL AL ACAR+ AL G++IHA+VLR ++ +P N L+D+Y R G ++ A
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP---NALLDLYVRCGRMNYAW 544
Query: 518 VVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577
F N +++VVSW L+TGY HG G A F++M + G+ PD VTF+ LL ACS SG
Sbjct: 545 NQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603
Query: 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637
MV QGL+YF SM +++ I+ +HYAC+VDLLGRA +L EA I MP+ P P +W AL
Sbjct: 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663
Query: 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697
LN CRIH +VELGELAA + EL+ G Y LL N+YA+AG+W +VAR+R M+ G+
Sbjct: 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723
Query: 698 KRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDE 757
PGCSWV+ K F D +HPQ ++I +L G +++KA G S ++ + +
Sbjct: 724 VDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEV 782
Query: 758 EKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDS 817
K D+ HSE+LA+A+G++ T PG PI +TKNL +C +CH+ + FIS I+ EI +RD+
Sbjct: 783 SKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDT 842
Query: 818 NRFHHFKEGSCTC 830
+FHHFK+G C+C
Sbjct: 843 EQFHHFKDGECSC 855
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 491 bits (1266), Expect = e-163
Identities = 218/575 (37%), Positives = 339/575 (58%), Gaps = 48/575 (8%)
Query: 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320
+CGM+ +A+++F+ M +++ SW ++ G G++ +AFALF++M ++
Sbjct: 170 KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED----------- 218
Query: 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRV 380
G + T V +L A +G+ G++ HC +K
Sbjct: 219 ------------------------GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
+ D V ALIDMY+KC ++ AR +FD + K W M+ Y+ +G +
Sbjct: 255 VV------GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT--TVAWNSMLAGYALHGYS 306
Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
+AL L+ +M +D V + FT S + +RLA L +Q HA ++R + + I VA
Sbjct: 307 EEALCLYYEM--RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI--VA 362
Query: 501 N-CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
N L+D+YS+ G ++ AR VFD + ++N++SW +L+ GYG HG G KA F++M EG+
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 560 APDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619
AP+ VTFL +L AC +SG+ +QG + F SMS+ I RA HYAC+++LLGR LDEA
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
Query: 620 ELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679
+I P +PT +W ALL CRIH N+ELG LAA +L + EK +Y +L N+Y ++G
Sbjct: 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542
Query: 680 RWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739
R + A++ +K G+ P C+W++ K+ +FF GDR HPQS++IY+ L L++ I
Sbjct: 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602
Query: 740 AMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHS 799
GYV + + L DVD++E+ HSEKLA+A+G++ T+ TP++IT++ RIC DCH
Sbjct: 603 EYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHK 662
Query: 800 AITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
I FI+++ EI++RD++RFHHFK G C+C YW
Sbjct: 663 VIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 3e-59
Identities = 124/441 (28%), Positives = 212/441 (48%), Gaps = 31/441 (7%)
Query: 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267
N+ + A G E L L M +++V D + V C W R + G
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCE----WKRAVEEGS-RV 108
Query: 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
+ V NAM++ + R G A+ +F KM + ++ +W+ ++ GYA+
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAK 164
Query: 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH 387
G+ EAL ++ +M + G+ P+V T +L C + L G+E H + ++
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF------GF 218
Query: 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALF 447
D+ V+NALI MY KC V AR++FD + RD +W MI Y +NG + L LF
Sbjct: 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP--RRDCISWNAMISGYFENGECLEGLELF 276
Query: 448 PQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507
M + V P+ T++ + AC L R GR++H YV++ + + + N LI MY
Sbjct: 277 FTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV-CNSLIQMY 333
Query: 508 SRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567
G A VF ++ ++ VSWT++++GY +GL DKA + M ++ ++PD +T
Sbjct: 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393
Query: 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI----VDLLGRANRLDEAVELIE 623
+L AC+ G +D G+K E Y + +++ + +D+A+E+
Sbjct: 394 SVLSACACLGDLDVGVKL-----HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448
Query: 624 GMPMEPTPIIWVALLNGCRIH 644
+P E I W +++ G R++
Sbjct: 449 NIP-EKDVISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 2e-58
Identities = 143/464 (30%), Positives = 232/464 (50%), Gaps = 25/464 (5%)
Query: 119 AFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178
A +L M DE + + + C + GS V + SS V + NA+++
Sbjct: 70 ALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129
Query: 179 MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238
M+ R L +A +F +M + D+ SWN +V YA++G + L L+ RM V+
Sbjct: 130 MFVRFGELVHAWYVFGKMPER---DLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRP 185
Query: 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFED 298
D + L C + +RG++ + FE + V DVV NA++T Y + G
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREV-HAHVVRFGFE-LDV-DVV--NALITMYVKCGDVVS 240
Query: 299 AFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358
A +F +M + + ++W+A+I+GY + G E L++F M+ ++P+++T+ S++S
Sbjct: 241 ARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418
C +G LG+E H Y +K +VD S V N+LI MY S A +F +
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVS------VCNSLIQMYLSLGSWGEAEKVFSRM- 349
Query: 419 PKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478
+ +D +WT MI Y +NG + AL + M Q + V P+ T++ L ACA L L
Sbjct: 350 -ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN--VSPDEITIASVLSACACLGDLD 406
Query: 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGY 538
G ++H R + VAN LI+MYS+ ID A VF N+ +++V+SWTS++ G
Sbjct: 407 VGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465
Query: 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582
++ +A F QM L P+ VT + L AC+ G + G
Sbjct: 466 RLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 4e-42
Identities = 119/460 (25%), Positives = 207/460 (45%), Gaps = 33/460 (7%)
Query: 117 DNAFRLF-LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA 175
A LF + + T+ +++AC L S RC +V+ + SSGF+ + ++ N
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVK 235
++ M+ +C L AR+LFDEM + ++ SW TI+ +G+ LF M D
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 236 VQGDGVSLVNALSACASLGTWSRGKQ---CGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292
+ V L A A LG+ G+Q C V + V D A++ YS+
Sbjct: 221 DAEPR-TFVVMLRASAGLGSARAGQQLHCC--------VLKTGVVGDTFVSCALIDMYSK 271
Query: 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVT 352
G EDA +F M ++ V W++++AGYA G+ EAL ++ +M+ G+ + T
Sbjct: 272 CGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARV 412
++ + + L K+ H I+ P D++ AL+D+Y+K ++ AR
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGF------PLDIVANTALVDLYSKWGRMEDARN 381
Query: 413 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472
+FD + KN + +W +I Y +G A+ +F +M + V PN T L AC
Sbjct: 382 VFDRMPRKN--LISWNALIAGYGNHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACR 437
Query: 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVS-W 531
G +I + N C+I++ R G +D A + + V+ W
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497
Query: 532 TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571
+L+T +H + A +++ G+ P+ + V+L
Sbjct: 498 AALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLL 535
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-38
Identities = 63/132 (47%), Positives = 74/132 (56%), Gaps = 23/132 (17%)
Query: 700 PGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE- 758
PGC W +GK GD +HP S+ L QRIK G VP+T HDVD EE
Sbjct: 1 PGCVWSEGK----KTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 759 -----KGDLLFEHSEKLALAYGILTTAPGTPIRITKNL-RICGDCHSAITFISMIINHEI 812
KG LL H+EK ALAYG+LTT RI K L R+CGDCH +I+ EI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 813 ILRDSNRFHHFK 824
I+RD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-33
Identities = 85/275 (30%), Positives = 136/275 (49%), Gaps = 17/275 (6%)
Query: 99 SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVH 158
++ W +I V AF LF +M G + TF +L+A L S+R G +H
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSG 218
+ +G + FV AL+ MY++C + AR +FD M + V+WN+++A YA G
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHG 304
Query: 219 DAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ--CGMMEEAKKVFERMK 276
+E L L+ M D V D + + + L KQ G++ F
Sbjct: 305 YSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---FP--- 357
Query: 277 VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
D+V+ A+V YS+ G EDA +F +M ++ N+++W+A+IAGY G G +A++
Sbjct: 358 -LDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVE 412
Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKE 371
+F +M G+ PN VT +++LS C G G E
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-15
Identities = 81/366 (22%), Positives = 155/366 (42%), Gaps = 56/366 (15%)
Query: 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355
+ A + + +++ +K + ++ +I+ A+ G +VF +M G+E NV T +
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 356 LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415
L+ GCA G + K Y I R K+V RV+F+
Sbjct: 513 LIDGCARAGQ--VAKAFGAYGIMR------------------------SKNVKPDRVVFN 546
Query: 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475
A +I + Q+G + A + +M + + P+ T+ + ACA
Sbjct: 547 A-------------LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 476 ----ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV--- 528
A + IH Y ++ E+ V +C S+ GD D A ++D++K++ V
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC-----SQKGDWDFALSIYDDMKKKGVKPD 648
Query: 529 -VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587
V +++L+ G G DKA RK+G+ V++ L+ ACS++ + L+ ++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP---MEPTPIIWVALLNGCRIH 644
+ K + ++ L N+L +A+E++ M + P I + LL
Sbjct: 709 DI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 645 ANVELG 650
+ ++G
Sbjct: 768 DDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 1e-11
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327
DVV++N ++ GY + G E+A LF +M++ +K NV T+S +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361
+VVT++ +I GY ++G EAL +F +M+ G++PNV T L+ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 6e-11
Identities = 99/430 (23%), Positives = 169/430 (39%), Gaps = 81/430 (18%)
Query: 211 VAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270
V A +Q D ++ + G ++ D +S CA + G ++ +
Sbjct: 446 VCASSQDIDGALRVLRLVQEAG---LKADCKLYTTLISTCA---------KSGKVDAMFE 493
Query: 271 VFERMKVK----DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326
VF M +V ++ A++ G +R G AF + MR +NVK + V ++A+I+
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 327 QRGHGHEALDVFRQM--QFCGLEPNVVTLVSLLSGCASVG----ALLLGKETHCYTIKRV 380
Q G A DV +M + ++P+ +T+ +L+ CA+ G A + + H Y IK
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 381 LSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440
V +T+ + S SQ G
Sbjct: 614 PEV-------------------------------------------YTIAVNSCSQKGDW 630
Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACA---RLAALRFGRQIHAYVLRNQYEMLIP 497
+ AL+++ M ++ VKP+ S AL+ A F A R Q L
Sbjct: 631 DFALSIYDDMKKKG--VKPDEVFFS-ALVDVAGHAGDLDKAFEILQDA---RKQGIKLGT 684
Query: 498 FVANCLIDMYSRSGDIDTARVVFDNLK----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
+ L+ S + + A +++++K + V + +L+T KA +
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
M++ GL P+ +T+ +LL A D GL S +KE GI CI L R
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLL-SQAKEDGIKPNLVMCRCITGLCLR-- 801
Query: 614 RLDEAVELIE 623
R ++A L E
Sbjct: 802 RFEKACALGE 811
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575
+VV++ +L+ GY G ++A F++M+K G+ P+ T+ +L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 51/252 (20%), Positives = 116/252 (46%), Gaps = 23/252 (9%)
Query: 117 DNAFRLFLQMMRRGWHPDEYTFPFVLKAC---GELPSSRCGSSVHAVICSSGFDSNVFVC 173
D F +F +M+ G + +TF ++ C G++ + + ++ S + V
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA---FGAYGIMRSKNVKPDRVVF 545
Query: 174 NALMAMYARCDTLSYARQLFDEM---FQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230
NAL++ + + A + EM P D ++ ++ A A +G + ++ +M
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY-QM 604
Query: 231 TGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDV----VSWNAM 286
+ ++G A+++C+ G W + A +++ MK K V V ++A+
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDW---------DFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
V G + AF + + R++ +KL V++S+++ + + +AL+++ ++ L
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 347 EPNVVTLVSLLS 358
P V T+ +L++
Sbjct: 716 RPTVSTMNALIT 727
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 3e-06
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC 145
+N LI + + A +LF +M +RG P+ YT+ ++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 29/296 (9%)
Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHP---DEYTFPFVLKAC---GELPSSRCGSS 156
+NALI + D AF + L M+ HP D T ++KAC G++ ++
Sbjct: 545 FNALISACGQSGAVDRAFDV-LAEMKAETHPIDPDHITVGALMKACANAGQVDRAK---E 600
Query: 157 VHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWNTIV--AA 213
V+ +I V + ++ +A ++D+M + G+ D V ++ +V A
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFE 273
+A D ++ AR G ++ VS + + AC++ W + + + E+ K
Sbjct: 661 HAGDLDKAFEILQDARKQG---IKLGTVSYSSLMGACSNAKNWKKALE--LYEDIKS--- 712
Query: 274 RMKVKDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGH 332
+K++ VS NA++T A + +M++ + N +T+S ++ ++
Sbjct: 713 -IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 333 EALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388
LD+ Q + G++PN+V + C L E C + V+S D P
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCITGLC------LRRFEKACALGEPVVSFDSGRP 821
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 12/31 (38%), Positives = 24/31 (77%)
Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENV 311
V++N++++GY + G E+A LFK+M+++ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350
VT++ +I G + G EAL++F++M+ G+EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV 315
V++N ++ G + G E+A LFK+M++ ++ +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 12/31 (38%), Positives = 24/31 (77%)
Query: 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGL 346
VT++++I+GY + G EAL++F++M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559
V++ SL++GY G ++A F +M+++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
DV T+ +I Y + G +AL LF +M + + +KPN +T S + +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK 312
+ ++NA++ ++ G + A A+ ++M+ +K
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
+K +VVT++ +I G + G EA+++ +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 3e-04
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQR----NVVSWTSLMTGY 538
N LID Y + G ++ A +F+ +K+R NV +++ L+ G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 90 LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149
+++ P VF+ +AL+ A D AF + ++G ++ ++ AC
Sbjct: 640 MKKKGVKPDEVFF-SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGIC-DIVSWN 208
+ + ++ I S V NAL+ + L A ++ EM + G+C + ++++
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 209 TIVAAYAQSGDAEGGLMLFARMTGD 233
++ A + DA+ GL L ++ D
Sbjct: 759 ILLVASERKDDADVGLDLLSQAKED 783
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDE 135
+N LI + + A LF +M RG PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMR 307
DVV++N ++ G R G ++A L +M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562
V++ +L+ G G ++A F +M++ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.36 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.24 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.15 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.99 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.95 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.9 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.83 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.82 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.6 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.57 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.48 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.47 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.3 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.25 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.19 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.19 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.18 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.97 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.95 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.82 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.79 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.7 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.63 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.58 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.57 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.56 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.53 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.33 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.28 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.27 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.26 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.26 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.25 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.22 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.22 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.19 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.98 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.93 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.9 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.79 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.76 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.66 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.46 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.39 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.36 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.28 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.1 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.95 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.83 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.73 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.46 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.03 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.72 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.41 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.17 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.01 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.99 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.92 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.76 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.58 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.46 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.29 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.17 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.02 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.61 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.5 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.68 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.5 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.38 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.69 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.35 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.64 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.43 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.33 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.24 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.23 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.18 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.47 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.37 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.46 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.75 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.53 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.36 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.02 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.21 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.84 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 84.78 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.69 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 83.97 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.73 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.69 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.57 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.49 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.18 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 83.13 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.45 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.25 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.0 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.67 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-143 Score=1273.41 Aligned_cols=784 Identities=38% Similarity=0.693 Sum_probs=762.9
Q ss_pred CCChhHHHHHHHhcccCCCCCCc-hhHHHHHhcc---ChHHHHHHHHHHHHhcCCCCC--chHHHHHHhhCCCchhHHHH
Q 003273 16 PLTLNHLFTNIKLFSVTTTPCIK-ITSLLLRQCK---SLTQVYLIHQQIIVQNLTHVP--PSHLIAAYVSHNAPSPALSL 89 (834)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 89 (834)
.+.+.+|..+++.|...|++|+. ++..+++.|. .+..+.++|..+++.++.++. +|.|+.+|+++|+++.|.++
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~ 143 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHH
Confidence 36788999999999999999999 9999999986 688999999999999988777 89999999999999999999
Q ss_pred hcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCc
Q 003273 90 LQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSN 169 (834)
Q Consensus 90 f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 169 (834)
|++|++++. ++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+.+.|+.||
T Consensus 144 f~~m~~~d~--~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 144 FGKMPERDL--FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred HhcCCCCCe--eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
+.++|+|+.+|+++|++++|.++|++|+.+ |.++||+||.+|++.|++++|+++|++|... |+.||..||+.++.+
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISA 297 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHH
Confidence 999999999999999999999999999988 9999999999999999999999999999999 999999999999999
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHH
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 325 (834)
|. +.|+++.|.+++..+. .||..+||+||.+|++.|++++|.++|++|.. ||.++||+||.+|
T Consensus 298 ~~---------~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 298 CE---------LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HH---------hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 99 6677788888887765 67999999999999999999999999999975 5999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCC
Q 003273 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405 (834)
Q Consensus 326 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 405 (834)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+. |..++..++|+|+++|+++|
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~------g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK------GLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh------CCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 485 (834)
++++|.++|++|. .+|+++||+||.+|+++|+.++|+.+|++|.. ++.||.+||+++|.+|++.|.++.++++|.
T Consensus 439 ~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~---~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh---CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999998 78999999999999999999999999999974 499999999999999999999999999999
Q ss_pred HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH
Q 003273 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT 565 (834)
Q Consensus 486 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 565 (834)
.+.+.|+. ++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+|
T Consensus 514 ~~~~~g~~-~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 514 HVLRTGIG-FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHHhCCC-ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 99999999 99999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
|+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+|+|++++|.+++++|+.+||..+|++|+++|+.+|
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999997889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChH
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQ 725 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~ 725 (834)
+.+.|+.+++++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|++||.+||+.+
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhhhcccHHHHHHhchhcCCCCCcEEEeecccccCCcchhHHHHh
Q 003273 726 KIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFIS 805 (834)
Q Consensus 726 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~h~~~~~~s 805 (834)
+||.+|++|..+|++.||+||+..++ ++++++|+..+++||||||+|||||+||+|.||||+||||||+|||+++||||
T Consensus 752 ~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s 830 (857)
T PLN03077 752 EINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFIS 830 (857)
T ss_pred HHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHH
Confidence 99999999999999999999999888 55888999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEEEEeCCcccccCCCcCCCCC
Q 003273 806 MIINHEIILRDSNRFHHFKEGSCTCKG 832 (834)
Q Consensus 806 ~~~~~~~~~~d~~~~h~~~~g~csc~~ 832 (834)
++++|||||||.+|||||++|+|||+|
T Consensus 831 ~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 831 KIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-120 Score=1050.09 Aligned_cols=608 Identities=37% Similarity=0.666 Sum_probs=565.6
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC----CC
Q 003273 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VK 278 (834)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~ 278 (834)
+..+|+.+|.+|.+.|++++|+++|+.|....++.||..||+.++.+|+ +.++++.+.+++..|. .|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~---------~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI---------ALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHhCCCc
Confidence 3444555555555555555555555555443234455555555555554 3334444444444432 47
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003273 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358 (834)
Q Consensus 279 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 358 (834)
|..+||.++.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 888899999999999999999999999975 6999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcC
Q 003273 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNG 438 (834)
Q Consensus 359 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g 438 (834)
+|+..|..+.++++|..+.+. |..+|..++|+|+++|+++|++++|.++|++|. .+|+++||+||.+|+++|
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKT------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHh------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCC
Confidence 999999999999999999999 999999999999999999999999999999998 789999999999999999
Q ss_pred ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHH
Q 003273 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518 (834)
Q Consensus 439 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (834)
+.++|+++|++|.+ .|+.||..||++++.+|++.|.++.|+++|..+.+.|+. ++..++++|+++|+|+|++++|.+
T Consensus 305 ~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 305 YSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999998 899999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 519 VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 519 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
+|++|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+
T Consensus 382 vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCcccccCChhh
Q 003273 679 GRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEE 758 (834)
Q Consensus 679 g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~ 758 (834)
|+|++|.++++.|+++|++|.||+|||++++.+|.|++||.+||+..+||.++.+|..+|++.||+||+.++++|+++++
T Consensus 542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccHHHHHHhchhcCCCCCcEEEeecccccCCcchhHHHHhhhhceEEEEEeCCcccccCCCcCCCCCCC
Q 003273 759 KGDLLFEHSEKLALAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834 (834)
Q Consensus 759 ~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~~ 834 (834)
|+..+++||||||+|||||++|+|.||||+||||||+|||+|+||||++++|+|||||.+|||||++|+|||+|||
T Consensus 622 ~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 622 EKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-79 Score=726.14 Aligned_cols=680 Identities=25% Similarity=0.343 Sum_probs=598.2
Q ss_pred hhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003273 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMY 180 (834)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~ 180 (834)
.++|.++.++++.|++++|+.+|+.|...|++|+..+|..++++|...+.++.|.++|..+.+.|..++..++|+|+++|
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
+++|+++.|.++|++|+++ |+++||++|.+|++.|++++|+++|++|... |+.||.+||+.++.+|+.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~---d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~-------- 199 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPER---DLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGG-------- 199 (857)
T ss_pred HhCCChHHHHHHHhcCCCC---CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCC--------
Confidence 9999999999999999988 9999999999999999999999999999998 999999999999999994
Q ss_pred hcCcHHHHHHHHHhcC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHH
Q 003273 261 QCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 336 (834)
.+++..+.+++..+. .+|..+||+||.+|+++|++++|.++|++|.. ||.++||+||.+|++.|++++|++
T Consensus 200 -~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 200 -IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred -ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHH
Confidence 445555566655544 68999999999999999999999999999975 499999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 337 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
+|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+. |+.||..++|+|+++|+++|++++|.++|++
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT------GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh------CCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccc
Q 003273 417 IAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496 (834)
Q Consensus 417 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 496 (834)
|. .||+++||+||.+|++.|++++|+++|++|.+ .|+.||..||++++.+|++.|+++.|.++|+.+.+.|+. ++
T Consensus 349 m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~~ 423 (857)
T PLN03077 349 ME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQ--DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI-SY 423 (857)
T ss_pred CC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC-cc
Confidence 98 79999999999999999999999999999999 899999999999999999999999999999999999999 99
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 576 (834)
..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999986 5999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003273 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANR 656 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 656 (834)
|.++.+.+++..+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.+++++
T Consensus 503 g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 503 GALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred chHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999986 499999999999999999999999999999999 69999999999999999999999999999
Q ss_pred HHhc--CCCCCchHHHHHHHHHhcCCchhHHHHHHHHH-hcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHH
Q 003273 657 LLEL--ESEKDGSYTLLSNIYANAGRWKDVARIRSLMK-HTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAG 733 (834)
Q Consensus 657 ~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~ 733 (834)
+.+. .| |..+|..++.+|.+.|++++|.++|+.|+ +.|+.++...-.. .+.....-+..++ ..+
T Consensus 580 M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~e----A~~ 646 (857)
T PLN03077 580 MVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTE----AYN 646 (857)
T ss_pred HHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHH----HHH
Confidence 9885 46 68899999999999999999999999998 6677653311000 0111111222233 233
Q ss_pred HHHHHHHcCcccCCCcccccCChhhhhhhhhcccHHHH-HHhchhcCCCCCcEEEeecccccCCcchhHHHHhhhhceEE
Q 003273 734 LVQRIKAMGYVPQTSFALHDVDDEEKGDLLFEHSEKLA-LAYGILTTAPGTPIRITKNLRICGDCHSAITFISMIINHEI 812 (834)
Q Consensus 734 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~~~~~~~~nl~~~~~~h~~~~~~s~~~~~~~ 812 (834)
+ +++.+..||....-.-+..+...+-+- --|+.| ..+.+.|..++.-+.+..-....|+-.++.+.-..|..+.+
T Consensus 647 ~---~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 647 F---INKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred H---HHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 3 444468888755433344442211110 012222 33556666556554444455678999999999988887732
Q ss_pred E-------EEeCCcccccCCCcCC
Q 003273 813 I-------LRDSNRFHHFKEGSCT 829 (834)
Q Consensus 813 ~-------~~d~~~~h~~~~g~cs 829 (834)
- |--.+..|-|..|--|
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCC
Confidence 1 1123567888766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=611.81 Aligned_cols=525 Identities=17% Similarity=0.260 Sum_probs=479.9
Q ss_pred chHHHHHHhhCCCchhHHHHhcccCCCCc---chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHc
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRISPSPF---SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACG 146 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 146 (834)
+..++..++++|++++|+++|++|+.++. +...++.++.+|.+.|..++|+.+|+.|.. ||..+|+.+|.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 88899999999999999999999987664 335567788889999999999999999863 99999999999999
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCC-CCcchHHHHHHHHHhCCChhHHHH
Q 003273 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSWNTIVAAYAQSGDAEGGLM 225 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 225 (834)
+.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|.+.|+ ||..+|++||.+|++.|++++|++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999886 799999999999999999999999
Q ss_pred HHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC------CCChhHHHHHHHHHHcCCCHHHH
Q 003273 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK------VKDVVSWNAMVTGYSRIGSFEDA 299 (834)
Q Consensus 226 ~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~d~~~~~~li~~~~~~g~~~~A 299 (834)
+|++|.+. |+.||..||+.++.+|+ +.|++++|.++|++|. .||..+|++||.+|++.|++++|
T Consensus 529 lf~~M~~~-Gv~PD~vTYnsLI~a~~---------k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 529 AYGIMRSK-NVKPDRVVFNALISACG---------QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999998 99999999999999999 8899999999999984 57999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKR 379 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 379 (834)
.++|++|.+.|+.|+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC--CCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 003273 380 VLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK--NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457 (834)
Q Consensus 380 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~ 457 (834)
+.+||..+|++||.+|+++|++++|.++|++|... .||.++||.||.+|++.|++++|+++|++|.. .|+
T Consensus 679 ------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~--~Gi 750 (1060)
T PLN03218 679 ------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR--LGL 750 (1060)
T ss_pred ------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCC
Confidence 99999999999999999999999999999999643 48999999999999999999999999999999 899
Q ss_pred cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHH----HhcCCHHHHHHHHhhcCCCChhHHHH
Q 003273 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY----SRSGDIDTARVVFDNLKQRNVVSWTS 533 (834)
Q Consensus 458 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~g~~~~A~~~~~~~~~~~~~~~~~ 533 (834)
.||..||++++.+|++.|+++.|.++|..|.+.|+. ++..+|++|+.++ .++++..++...|+.+...+...|+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~- 828 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT- 828 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH-
Confidence 999999999999999999999999999999999999 9999999999874 4445554444455444333444454
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 613 (834)
++|+.+|++|++.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|+++++++++.
T Consensus 829 -----------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~- 895 (1060)
T PLN03218 829 -----------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY- 895 (1060)
T ss_pred -----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC-
Confidence 569999999999999999999999998887888888888888877543 7778889999999988543
Q ss_pred CHHHHHHHHHhC---CCCCCHH
Q 003273 614 RLDEAVELIEGM---PMEPTPI 632 (834)
Q Consensus 614 ~~~~A~~~~~~~---~~~p~~~ 632 (834)
.++|..++++| .+.|+..
T Consensus 896 -~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 -DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred -hHHHHHHHHHHHHcCCCCCcc
Confidence 46899999998 4556653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-64 Score=579.82 Aligned_cols=512 Identities=19% Similarity=0.243 Sum_probs=425.5
Q ss_pred CcccHHHHHHHHccCCCchHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHH
Q 003273 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGF-DSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVA 212 (834)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~ 212 (834)
+...|..++..|++.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.+|.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHH
Confidence 334455555555555555555555555555553 34444455555555555555555555555554 25555555555
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHc
Q 003273 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR 292 (834)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~ 292 (834)
+|++.|++++|.++|++|.+. |+ .||..+||+||.+|++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~-Gl----------------------------------------~pD~~tynsLI~~y~k 484 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEA-GL----------------------------------------KADCKLYTTLISTCAK 484 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc-CC----------------------------------------CCCHHHHHHHHHHHHh
Confidence 555555555555555555544 33 4677888888888999
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHH
Q 003273 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372 (834)
Q Consensus 293 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 372 (834)
.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++
T Consensus 485 ~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC--CCccchHHHHHHHHhcCChhHHHHHHHhh
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN--RDVATWTVMIGSYSQNGGANDALALFPQM 450 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m 450 (834)
+..+... ..+..||..+|++||.+|+++|++++|.++|+.|.+.+ |+..+||.+|.+|++.|++++|+++|++|
T Consensus 565 f~eM~~~----~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 565 LAEMKAE----THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHh----cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9998763 01688999999999999999999999999999998665 68899999999999999999999999999
Q ss_pred cccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CC
Q 003273 451 FQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----QR 526 (834)
Q Consensus 451 ~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~ 526 (834)
.+ .|+.||..||+.++.+|++.|+++.|.++|..|.+.|+. ++..+|++|+++|+++|++++|.++|++|. .|
T Consensus 641 ~~--~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 641 KK--KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred HH--cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99 899999999999999999999999999999999999999 999999999999999999999999999995 69
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 606 (834)
|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++++
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLI 796 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCIT 796 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999764 9999999999999
Q ss_pred HHHh----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 607 DLLG----RAN-------------------RLDEAVELIEGM---PMEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 607 ~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
+++. +++ ..++|..+|++| ...||..+|+++++++...+..+.+..+++.+...
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 8743 332 246799999999 57799999999998777888888888877765432
Q ss_pred -CCCCCchHHHHHHHHHhcCCc-hhHHHHHHHHHhcCCccCC
Q 003273 661 -ESEKDGSYTLLSNIYANAGRW-KDVARIRSLMKHTGVKKRP 700 (834)
Q Consensus 661 -~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~ 700 (834)
.+.+..+|..|++.+ |++ ++|..+++.|.+.|+.++.
T Consensus 877 ~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 455678999999987 444 6899999999999998654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=592.02 Aligned_cols=466 Identities=25% Similarity=0.429 Sum_probs=442.3
Q ss_pred hhHHHHHHHHHhCCCchhHHHHHHHHHHcC-CCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003273 101 FWWNALIRRAVRLRLPDNAFRLFLQMMRRG-WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAM 179 (834)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 179 (834)
.+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.|.++|..|.+.|+.||..++|.|+++
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 799999999999999999999999998764 7899999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhh
Q 003273 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259 (834)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~ 259 (834)
|+++|++++|.++|++|+++ |.++||++|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|+
T Consensus 168 y~k~g~~~~A~~lf~~m~~~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~-------- 235 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASA-------- 235 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCC---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHh--------
Confidence 99999999999999999987 9999999999999999999999999999998 99999999999999999
Q ss_pred hhcCcHHHHHHHHHhc----CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHH
Q 003273 260 KQCGMMEEAKKVFERM----KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL 335 (834)
Q Consensus 260 ~~~g~~~~A~~~~~~~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 335 (834)
+.|.++.+.+++..+ ..+|..+||+||++|+++|++++|.++|++|... |+++||+||.+|++.|++++|+
T Consensus 236 -~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 236 -GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred -cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC----ChhHHHHHHHHHHhCCCHHHHH
Confidence 455566666665544 3679999999999999999999999999999764 9999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHH
Q 003273 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415 (834)
Q Consensus 336 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 415 (834)
++|++|.+.|+.||..||++++.+|++.|.++.|+++|..+.+. ++++|..++++|+++|+++|++++|.++|+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT------GFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh------CCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCc
Q 003273 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-NQYEM 494 (834)
Q Consensus 416 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~ 494 (834)
+|. .+|+++||+||.+|++.|+.++|+++|++|.+ .|+.||.+||+++|.+|++.|.+++|.++|..|.+ .|+.
T Consensus 385 ~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~- 459 (697)
T PLN03081 385 RMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK- 459 (697)
T ss_pred hCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-
Confidence 998 79999999999999999999999999999999 89999999999999999999999999999999986 5888
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYA 572 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 572 (834)
++..+|++++++|+++|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.|++.
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL 537 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH
Confidence 999999999999999999999999999998 79999999999999999999999999999976 6776 6789999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISA 597 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p 597 (834)
|++.|++++|.++++.|.++ |+.+
T Consensus 538 y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99999999999999999765 7653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=357.30 Aligned_cols=646 Identities=11% Similarity=0.032 Sum_probs=396.9
Q ss_pred CCChhHHHHHHHhcccCCCCCCc---hhHHHHHhccChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhc
Q 003273 16 PLTLNHLFTNIKLFSVTTTPCIK---ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQ 91 (834)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~ 91 (834)
.+++.+|...+++.....+.... ....++...+....+...+..+....+.... .......+...|++++|...|+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQ 285 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 47788888888877644322111 2233334445777788777777766544333 3333444556778888888877
Q ss_pred ccCCCCcc-hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCch
Q 003273 92 RISPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNV 170 (834)
Q Consensus 92 ~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 170 (834)
+....+++ ...+..+...+...|++++|...|++..... +.+...+..+...+...|+.++|...+..+.+.. +.+.
T Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 363 (899)
T TIGR02917 286 DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDP 363 (899)
T ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 76433321 1334445556667777788887777776542 2334445556666777777777777777776654 4556
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc-cchHhHHHH
Q 003273 171 FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG-VSLVNALSA 249 (834)
Q Consensus 171 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~~l~a 249 (834)
..++.+...|.+.|++++|...|+++....+.+...|..+...+...|++++|++.|+++.+. .|+. .....++..
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL---DPELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh---CCcchhhHHHHHHH
Confidence 677777777777777777777777776655556667777777777777777777777777643 2222 222233333
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHH
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 326 (834)
+. +.|+.++|..+++.+.. .+..+|+.+...|...|++++|...|+++.+..+. +...+..+...+.
T Consensus 441 ~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 510 (899)
T TIGR02917 441 YL---------RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDI 510 (899)
T ss_pred HH---------hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHH
Confidence 33 45666666666665542 34556666677777777777777777766655433 4455666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCC
Q 003273 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406 (834)
Q Consensus 327 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 406 (834)
..|++++|.+.|+++.+.+. .+..++..+...+...|+.+.+...+..+.+. .+.+...+..++..|.+.|+
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-------NPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CccchhHHHHHHHHHHHCCC
Confidence 67777777777776665432 23445555666666666666666666666553 34445556666666666666
Q ss_pred hHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHH
Q 003273 407 VDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP-NAFTLSCALMACARLAALRFGRQIH 484 (834)
Q Consensus 407 ~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~ 484 (834)
+++|..+++.+....| +...|..+...|.+.|++++|+..|+++.+ ..| +...+..+...+...|+++.|..++
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA----LQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666654333 455666666666666666666666666654 223 2334555555666666666666666
Q ss_pred HHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003273 485 AYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561 (834)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 561 (834)
..+.+... .+...+..++..+.+.|++++|..+++.+. ..+...|..+...+...|++++|+..|+++.+ ..|
T Consensus 659 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~ 734 (899)
T TIGR02917 659 KRALELKP--DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAP 734 (899)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCC
Confidence 66665432 445566666666666666666666666665 23445566666666666666666666666666 345
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003273 562 DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLN 639 (834)
Q Consensus 562 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 639 (834)
+..++..+..++...|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+..
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445555666666666666666666666654 22334556666666666666666666666655 12234556666666
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.+...|+ ..|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666 556666666666666666666666666666666666666666666544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=353.50 Aligned_cols=550 Identities=13% Similarity=0.041 Sum_probs=450.6
Q ss_pred HhCCCchhHHHHHHHHHHcCCCCCc-ccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 003273 111 VRLRLPDNAFRLFLQMMRRGWHPDE-YTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189 (834)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A 189 (834)
...|++++|...|+++...+ |+. ..+..+...+...|+.+.|...+..+.+.. +.+...+..+...+.+.|++++|
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence 34455555555555554432 221 122233344556777777777777777654 44566777888888899999999
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccc-hHhHHHHhhccCCchhhhhcCcHHHH
Q 003273 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVS-LVNALSACASLGTWSRGKQCGMMEEA 268 (834)
Q Consensus 190 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~~l~a~~~~~~~~~~~~~g~~~~A 268 (834)
...++.+....+.+...|+.+...|.+.|++++|.++|+++.+. .|+... +..+...+. ..|+.++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~---------~~~~~~~A 416 (899)
T TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL---DPENAAARTQLGISKL---------SQGDPSEA 416 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH---------hCCChHHH
Confidence 99998887776667888999999999999999999999988743 454433 333333333 67888999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003273 269 KKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345 (834)
Q Consensus 269 ~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 345 (834)
.+.|+.... .+...+..++..|.+.|++++|..+++++....+. +..+|+.+...+...|++++|.+.|+++.+..
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999887653 24556778889999999999999999999876443 78899999999999999999999999998754
Q ss_pred CCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-Cc
Q 003273 346 LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DV 424 (834)
Q Consensus 346 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~ 424 (834)
. .+...+..+...+...|+++.+...+..++.. .+.+..++..+...|.+.|+.++|...|+++....| +.
T Consensus 496 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 567 (899)
T TIGR02917 496 P-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567 (899)
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 2 33456677788888999999999999999874 466788999999999999999999999999875555 56
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHH
Q 003273 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504 (834)
Q Consensus 425 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 504 (834)
..+..++..|.+.|++++|+.+++++.. . ...+..++..+..++...|+++.|...+..+.+... .++..+..+.
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~ 642 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAAD--A-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP--DSALALLLLA 642 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHH
Confidence 7788899999999999999999999986 2 234566788889999999999999999999988653 5677888999
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003273 505 DMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 581 (834)
..|.+.|++++|..+|+++. ..+..+|..++..+...|++++|..+++.+.+.+ .++...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999887 3467899999999999999999999999999853 3357778888899999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|...|+.+.+ ..|+...+..++.++.+.|++++|.+.++++ ..+.+...+..+...|...|+.+.|...++++++
T Consensus 722 A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999874 4566688889999999999999999999887 2234677888888899999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 660 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..|+++.++..++.+|...|+ ++|..+++++.+.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999 8899999988765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=245.19 Aligned_cols=106 Identities=61% Similarity=1.074 Sum_probs=97.7
Q ss_pred ceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhh--------hhhhhcccHHHHH
Q 003273 701 GCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEK--------GDLLFEHSEKLAL 772 (834)
Q Consensus 701 ~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~e~la~ 772 (834)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999976 9999999999998 455677888999999999998877765 6688999999999
Q ss_pred HhchhcCCCCCcEEEeecc-cccCCcchhHHHHhhhhceEEEEEeCCcccccC
Q 003273 773 AYGILTTAPGTPIRITKNL-RICGDCHSAITFISMIINHEIILRDSNRFHHFK 824 (834)
Q Consensus 773 ~~~~~~~~~~~~~~~~~nl-~~~~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 824 (834)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-24 Score=263.53 Aligned_cols=388 Identities=11% Similarity=0.029 Sum_probs=206.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhHHH-----------
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP-NVVTLV----------- 354 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~----------- 354 (834)
...+...|++++|+..|++..+..+. +...+..+...|.+.|++++|+..|++..+..... +...+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45566677777777777777665443 56667777777777777777777777766543211 111111
Q ss_pred -HHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHH
Q 003273 355 -SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIG 432 (834)
Q Consensus 355 -~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~ 432 (834)
.....+...|++++|...+..++.. .|.+...+..|...|.+.|++++|++.|+++....|+ ...+..+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQV-------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1122345666777777777777663 3445566666777777777777777777776654443 334444444
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcC--------CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHH
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKP--------NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 504 (834)
.|. .++.++|+.+++.+.. ..... ....+......+...|++++|.+.+..+++... .++.++..+.
T Consensus 428 l~~-~~~~~~A~~~l~~l~~--~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--~~~~~~~~LA 502 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSA--SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP--GSVWLTYRLA 502 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCH--HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 443 3455666666555432 10000 001122233444455666666666666665443 3455555566
Q ss_pred HHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh---------HHHHHHHH
Q 003273 505 DMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV---------TFLVLLYA 572 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a 572 (834)
..|.+.|++++|...|+++. .| +...+..+...+...|+.++|+..++++......++.. .+..+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 66666666666666666553 22 33334334444455566666666555543221111110 11223344
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 650 (834)
+...|+.++|..+++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..+...+...|+.++|
T Consensus 583 l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555555441 1223334445555555555555555555544 1222 244555555555555555555
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++.++++.+..|+++..+..++.++...|++++|.++++.+..
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5555555555555555555555555555555555555555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-24 Score=257.72 Aligned_cols=610 Identities=11% Similarity=0.040 Sum_probs=445.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhcccCCCCc-chhhH----------------HHHHHHH
Q 003273 49 SLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQRISPSPF-SVFWW----------------NALIRRA 110 (834)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~----------------~~li~~~ 110 (834)
+.+.+.+...+++...+.... ...+...+...|+.++|.+.+++....++ +...+ ..+.+.+
T Consensus 43 ~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 43 REDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 778888888888766544333 78888889999999999999999854333 11222 2234467
Q ss_pred HhCCCchhHHHHHHHHHHcCCCCCccc-HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 003273 111 VRLRLPDNAFRLFLQMMRRGWHPDEYT-FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYA 189 (834)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A 189 (834)
.+.|++++|+..|+.+.... +|+... ...........++.++|...++.+++.. +.+...+..+...+...|+.++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH
Confidence 88999999999999988642 333321 1112222335689999999999999875 55677888999999999999999
Q ss_pred HHHHHhcCCCCCCC---cchHH-----------------HHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 190 RQLFDEMFQPGICD---IVSWN-----------------TIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 190 ~~~~~~m~~~~~~~---~~~~~-----------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
+..|+++......+ ...|. ..+..+-.....+.|...+.++... ...|+.... ..-.+
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~~-~~G~~ 278 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRAR-AQGLA 278 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHHH-HHHHH
Confidence 99999986542111 11121 1111111122233444444444322 112221110 00111
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCC-eeeHHHH----
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN-VVTWSAV---- 321 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l---- 321 (834)
+. ..|++++|+..|++... .+...+..+...|.+.|++++|+..|++..+...... ...|..+
T Consensus 279 ~~---------~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 279 AV---------DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HH---------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 11 67899999999988763 3778899999999999999999999999987654321 1223222
Q ss_pred --------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 322 --------IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 322 --------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
...+.+.|++++|+..|++..+... .+...+..+...+...|++++|.+.+..+++. .+.+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-------~p~~~~a 421 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRM-------DPGNTNA 421 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH
Confidence 3456789999999999999998642 23455667778889999999999999999984 4556667
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCC----------ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcc-
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRD----------VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF- 462 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~- 462 (834)
+..+...|. .++.++|...++.+....+. ...+..+...+...|++++|++.|++.++ ..|+..
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~----~~P~~~~ 496 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA----LDPGSVW 496 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHH
Confidence 777888875 46789999999887633221 22355667788899999999999999987 667653
Q ss_pred cHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC----Chh---------
Q 003273 463 TLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR----NVV--------- 529 (834)
Q Consensus 463 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~--------- 529 (834)
.+..+...+...|+.++|...++.+++... .++.....+...+.+.|+.++|...++.+... +..
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 456677788999999999999999987543 45666666666788899999999999988632 111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 609 (834)
.+..+...+...|+.++|+.+++. ..++...+..+...+...|++++|+..|+.+.+. -+.+...+..++.+|
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 123446678889999999999882 2344667778888999999999999999999852 233577889999999
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCCc
Q 003273 610 GRANRLDEAVELIEGMP-MEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG------SYTLLSNIYANAGRW 681 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~ 681 (834)
...|++++|++.++... ..| +...+..+..++...|+.++|.+.++++++..|+++. .+..++.++...|++
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 99999999999999874 334 4567778888889999999999999999998776543 566779999999999
Q ss_pred hhHHHHHHHHHh
Q 003273 682 KDVARIRSLMKH 693 (834)
Q Consensus 682 ~~a~~~~~~m~~ 693 (834)
++|...++....
T Consensus 728 ~~A~~~y~~Al~ 739 (1157)
T PRK11447 728 QQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-23 Score=212.58 Aligned_cols=451 Identities=14% Similarity=0.110 Sum_probs=345.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003273 103 WNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYAR 182 (834)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~ 182 (834)
-..|.....+.|++.+|.+.-...-..+ +.+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556667778999999998544333221 2222233333344445455554433333333322 3446788889999999
Q ss_pred CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhc
Q 003273 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262 (834)
Q Consensus 183 ~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~ 262 (834)
.|++.+|...++.+.+..+..+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~---------------- 189 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSD---------------- 189 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcc----------------
Confidence 99999999999999988777889999999999999999999999988873 45543332211
Q ss_pred CcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 263 g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
+...+-..|++++|...+.+..+..+. =.+.|+.|...+-..|+...|+..|++.+
T Consensus 190 -----------------------lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 190 -----------------------LGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred -----------------------hhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 122233467788888888877776443 56789999888888999999999888887
Q ss_pred HCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC
Q 003273 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422 (834)
Q Consensus 343 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 422 (834)
+. .|.-...|-.|...|...+.++.|...|.+.....|
T Consensus 246 kl------------------------------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 246 KL------------------------------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred cC------------------------------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 62 222234566777888888888888888888765556
Q ss_pred -CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHh
Q 003273 423 -DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501 (834)
Q Consensus 423 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 501 (834)
..+.+..|...|..+|..+-|+..|++.++ +.| .-+..|+
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P-----------------------------------~F~~Ay~ 324 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALE----LQP-----------------------------------NFPDAYN 324 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHh----cCC-----------------------------------CchHHHh
Confidence 467788888888999999999999999877 566 4456677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSG 577 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 577 (834)
.|..++-..|++.+|.+.|++.. .| -..+.+.|...|...|..++|..+|....+ +.|. ...++.|...|-+.|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc
Confidence 77788888888888888888776 23 355778888899999999999999999888 8888 677889999999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHH
Q 003273 578 MVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAA 654 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 654 (834)
++++|+..+++.. .|+|+ .+.|+.|...|-..|+.++|.+.+.+. .+.|. ....+.|.+.+...|++++|+..|
T Consensus 403 nl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999998876 68887 568899999999999999999998877 45565 457889999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCCchhH
Q 003273 655 NRLLELESEKDGSYTLLSNIYANAGRWKDV 684 (834)
Q Consensus 655 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 684 (834)
+.+++++|+.+.+|..|+.++--.-.|.+-
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 999999999999999999998888888773
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-20 Score=218.39 Aligned_cols=572 Identities=10% Similarity=0.000 Sum_probs=382.0
Q ss_pred hhCCCchhHHHHhcccCCCCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHH
Q 003273 78 VSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSS 156 (834)
Q Consensus 78 ~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (834)
...|++++|...|++....++ +...+..|...|...|++++|+..+++..+. .|+...|..++... ++.++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 344999999999998754333 3478889999999999999999999998874 56655555555333 78888999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH--------HHhCCChhHHHHHHHhcCCCCCCCcc-hHHHHHHHHHhCCChhHHHHHH
Q 003273 157 VHAVICSSGFDSNVFVCNALMAM--------YARCDTLSYARQLFDEMFQPGICDIV-SWNTIVAAYAQSGDAEGGLMLF 227 (834)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~Li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 227 (834)
+++++.+.. +.+..++..+... |.+.+....++. .+.... .|+.. ..-.+...|.+.|++++|++++
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~-~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA-SPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC-CCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999875 4556666666665 666644444444 222111 12333 3444588999999999999999
Q ss_pred HHhhhCCCCCCCccc-hHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003273 228 ARMTGDVKVQGDGVS-LVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306 (834)
Q Consensus 228 ~~m~~~~~~~p~~~t-~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 306 (834)
.++.+. + |.... ...+-.++.. ..++ +++..+++.....|...+..+...|.+.|+.++|..+++++
T Consensus 206 ~~L~k~-~--pl~~~~~~~L~~ay~q--------~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 206 NEARQQ-N--TLSAAERRQWFDVLLA--------GQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHhc-C--CCCHHHHHHHHHHHHH--------hhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 999976 3 33333 3333334431 1233 77777766544568899999999999999999999999998
Q ss_pred HhcCCC-CCeeeHHHH------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 003273 307 RQENVK-LNVVTWSAV------------------------------IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVS 355 (834)
Q Consensus 307 ~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 355 (834)
...-.. |...+|--+ +..+.+++.++-+.++. .+.|.....
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 345 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML-- 345 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--
Confidence 765333 333333322 23334444444333221 133333321
Q ss_pred HHHhh--hhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC----ccchHH
Q 003273 356 LLSGC--ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD----VATWTV 429 (834)
Q Consensus 356 ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~~~ 429 (834)
.++.. ...+...++.+....+.+ ..+.+....--+.....+.|+.++|.++|+......++ ...-+-
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~-------~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 418 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQ-------QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMAR 418 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence 22221 122344444455555444 22445555555666677889999999999987653322 233446
Q ss_pred HHHHHHhcCC---hhHHHHHHH----------------------hhcccCCCCcCC--cccHHHHHHHHhhhhhHHHHHH
Q 003273 430 MIGSYSQNGG---ANDALALFP----------------------QMFQQDKLVKPN--AFTLSCALMACARLAALRFGRQ 482 (834)
Q Consensus 430 li~~~~~~g~---~~~A~~l~~----------------------~m~~~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~ 482 (834)
++..|.+.+. ..+++.+-. ..... -+..|+ .......+..|...+..++|..
T Consensus 419 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~p~~~~~~a~~~LG~~l~~~~~~eAi~ 497 (987)
T PRK09782 419 LASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL-LGDMSPSYDAAAWNRLAKCYRDTLPGVALY 497 (987)
T ss_pred HHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh-cccCCCCCCHHHHHHHHHHHHhCCcHHHHH
Confidence 7777777766 333433311 11110 112233 2222222333333477777888
Q ss_pred HHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003273 483 IHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560 (834)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 560 (834)
.+....... ++......+...+...|++++|...|+++. .|+...+..+...+.+.|+.++|...|++.++. .
T Consensus 498 a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~ 572 (987)
T PRK09782 498 AWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--G 572 (987)
T ss_pred HHHHHHHhC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 776666544 222223344555568999999999998776 355566777778888999999999999999884 4
Q ss_pred CCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 003273 561 PDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVAL 637 (834)
Q Consensus 561 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 637 (834)
|+. ..+..+.......|++++|...++... .+.|+...|..+..++.+.|++++|++.+++. ...|+ ...+..+
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 653 334344445566799999999999887 45677888999999999999999999999887 34454 5677888
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888999999999999999999999999999999999999999999999999888764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-20 Score=218.34 Aligned_cols=639 Identities=11% Similarity=0.002 Sum_probs=405.1
Q ss_pred CCCChhHHHHHHHhcccCCCCCCc---hhHHHHHhccChHHHHHHHHHHHHhcCCCCCchHHHHHHhhCCCchhHHHHhc
Q 003273 15 TPLTLNHLFTNIKLFSVTTTPCIK---ITSLLLRQCKSLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQ 91 (834)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~ 91 (834)
.++++.+|++.+++.....+.... .+...+...+..++|.......++..+....+..++ ...++.+.|..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L---a~i~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL---AAIPVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---HHhccChhHHHHHH
Confidence 358888999999888743333211 333334445588888888888777654211133323 22288888999999
Q ss_pred ccCCCCcc-hhhHHHHHHH--------HHhCCCchhHHHHHHHHHHcCCCCCcccHHHH-HHHHccCCCchHHHHHHHHH
Q 003273 92 RISPSPFS-VFWWNALIRR--------AVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFV-LKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 92 ~~~~~~~~-~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~ 161 (834)
++...+++ ...+..+... |.+. ++|...++ .......|+..+.... .+.|...++++++..++..+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 87543331 1333333333 5544 55555555 3332233345444444 78899999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHh-CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc
Q 003273 162 CSSGFDSNVFVCNALMAMYAR-CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240 (834)
Q Consensus 162 ~~~g~~~~~~~~~~Li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 240 (834)
.+.+ +.+......|..+|.. .++ +.|..+++...+. |...+..+...|.+.|+.++|.+.++++.....-.|+.
T Consensus 209 ~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~---d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 209 RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFT---DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhccc---CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 9987 4556667778888887 477 8888887654444 88999999999999999999999999998652334666
Q ss_pred cchHhHHHHhhccC-----Cc----------------hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHH--HcCCCHH
Q 003273 241 VSLVNALSACASLG-----TW----------------SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGY--SRIGSFE 297 (834)
Q Consensus 241 ~t~~~~l~a~~~~~-----~~----------------~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~--~~~g~~~ 297 (834)
.++.-.+.-..... .+ +...+.+.++-+.++.+ ....+. . ..+..+ ...+...
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchh
Confidence 66555444332210 00 00004445554444422 211122 1 122222 2335666
Q ss_pred HHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHhhhhhchhhhhhHHHHH
Q 003273 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC--GLEPNVVTLVSLLSGCASVGALLLGKETHCY 375 (834)
Q Consensus 298 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 375 (834)
++...++.|...... +.....-+--...+.|+.++|..+|+..... ...++.....-++..+.+.+.+.....+...
T Consensus 360 ~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 666666666655222 4444444444566788888888888887662 1223333444666666665543332222111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-C--CccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-R--DVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
+.+.+...-..+ ..+.-....+...+....... + +...|..+..++.. +++++|+..|.+...
T Consensus 439 ----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 439 ----------SKPLPLAEQRQW---QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred ----------ccccccchhHHH---HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 000111000000 011111122333343333222 2 45566666666665 677778877777665
Q ss_pred cCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH
Q 003273 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWT 532 (834)
Q Consensus 453 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~ 532 (834)
..|+......+..++...|+++.|...+..+.... +.......+...+.+.|++++|...|+...+.++..++
T Consensus 505 ----~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~---p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~ 577 (987)
T PRK09782 505 ----RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD---MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA 577 (987)
T ss_pred ----hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC---CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence 44665443334444456777888877777765432 23334456677788889999999999887743332233
Q ss_pred H---HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 003273 533 S---LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDL 608 (834)
Q Consensus 533 ~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~ 608 (834)
. +.......|++++|+..|++.++ ..|+...+..+..++.+.|++++|...++...+ +.| +...+..+..+
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 2 22333445999999999999988 678878888888899999999999999998873 445 46678888889
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHH
Q 003273 609 LGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 686 (834)
+...|++++|++.+++. ...| +...|..+..++...|+.+.|+..++++++++|++..+....+++.....+++.+.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999877 3344 467888999999999999999999999999999998999999999999998888888
Q ss_pred HHHHHHhcCC
Q 003273 687 IRSLMKHTGV 696 (834)
Q Consensus 687 ~~~~m~~~~~ 696 (834)
-++..-...+
T Consensus 733 ~~~r~~~~~~ 742 (987)
T PRK09782 733 EVGRRWTFSF 742 (987)
T ss_pred HHHHHhhcCc
Confidence 7766654433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-21 Score=198.57 Aligned_cols=362 Identities=13% Similarity=0.142 Sum_probs=293.7
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003273 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358 (834)
Q Consensus 279 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 358 (834)
-..+|..+.+.+-..|++++|+.+++.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++. .|+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca----- 186 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCA----- 186 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhh-----
Confidence 4568889999999999999999999999988666 7889999999999999999999999988763 2443332
Q ss_pred hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhc
Q 003273 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQN 437 (834)
Q Consensus 359 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~ 437 (834)
.+.+....-..|++++|...|.+..+..|. .+.|+.|...+-.+
T Consensus 187 -----------------------------------~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~ 231 (966)
T KOG4626|consen 187 -----------------------------------RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQ 231 (966)
T ss_pred -----------------------------------hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhc
Confidence 223333444456666666666665544553 46677777777777
Q ss_pred CChhHHHHHHHhhcccCCCCcCCc-ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHH
Q 003273 438 GGANDALALFPQMFQQDKLVKPNA-FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516 (834)
Q Consensus 438 g~~~~A~~l~~~m~~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 516 (834)
|+...|+..|++... +.|+- ..|..+-..+...+.++.|...+....... |....++..|...|...|.++-|
T Consensus 232 Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred chHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHH
Confidence 777777777777765 56653 245555555666666666665555554433 25666777788889999999999
Q ss_pred HHHHhhcC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003273 517 RVVFDNLK--QRN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKE 592 (834)
Q Consensus 517 ~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (834)
...|++.. +|+ ...|+.|..++-..|++.+|...|.+.+. +.|+ ....+.|...+...|.+++|..+|....
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-- 381 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-- 381 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH--
Confidence 99999987 454 56899999999999999999999999999 7888 7889999999999999999999999876
Q ss_pred cCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 593 FGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 593 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
.+.|. ....+.|...|-.+|++++|+..+++. .++|+ ...++.+.+.|...|++..|.+.+.+++.++|.-+.++.
T Consensus 382 -~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 382 -EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred -hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 56666 567889999999999999999999887 67787 558999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 670 LLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+.+|-..|+..+|+.-++...+.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999988764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-17 Score=187.96 Aligned_cols=424 Identities=11% Similarity=0.046 Sum_probs=271.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHH
Q 003273 206 SWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNA 285 (834)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~ 285 (834)
.+......|.+.|++++|+..|++.... . |+...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~----------------------------------------p~~~~~~n 165 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---K----------------------------------------PDPVYYSN 165 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---C----------------------------------------CchHHHHH
Confidence 3556677788888888888888877632 3 33445566
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhch
Q 003273 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 365 (834)
+..+|.+.|++++|++.+++..+..+. +...|..+..+|...|++++|+..|......+-..+. ....++.....
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~--- 240 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK--- 240 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH---
Confidence 666677777777777777777765433 4556777777777777777777766655443211111 11111111111
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHH---HhcCChh
Q 003273 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSY---SQNGGAN 441 (834)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~---~~~g~~~ 441 (834)
..+.......++ ..+.+...+..+...+ .....+.+..-++......++ ...+..+...+ ...++++
T Consensus 241 -~~a~~~~~~~l~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 241 -KFAESKAKEILE-------TKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred -HHHHHHHHHHHh-------cCCCCCCCHHHHHHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence 011111111111 1112211222222211 111111111111111111111 11111111111 2235677
Q ss_pred HHHHHHHhhcccCCC-CcCCc-ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHH
Q 003273 442 DALALFPQMFQQDKL-VKPNA-FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVV 519 (834)
Q Consensus 442 ~A~~l~~~m~~~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 519 (834)
+|++.|++.+. .+ ..|+. ..+..+...+...|+++.|...+..+++... .....+..+...|...|++++|...
T Consensus 312 ~A~~~~~~al~--~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 312 EAARAFEKALD--LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777765 22 23432 3344444555667777788777777776532 4566777888889999999999999
Q ss_pred HhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 520 FDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 520 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
|+.+. ..+...|..+...+...|++++|+..|++.++ +.|+ ...+..+..++...|++++|+..|+...+. .
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 99876 34577899999999999999999999999998 6676 666778888899999999999999988752 3
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 596 SARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTP-------I-IWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
+.+...+..+..+|...|++++|++.|++. ...|+. . .++..+..+...|++++|+..++++++++|++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 334778889999999999999999999885 333321 1 1222222344469999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 667 SYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++..++.+|...|++++|.+.++...+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-19 Score=190.76 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=142.9
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCc
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~ 256 (834)
...+...|++++|...|+++.+.++.+..+|..+...|...|++++|+.+++.+... +..++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~----------------- 103 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTR----------------- 103 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCH-----------------
Confidence 345567889999999999998877667778899999999999999999999888753 11100
Q ss_pred hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHH
Q 003273 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336 (834)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 336 (834)
......+..+...|.+.|++++|..+|+++.+.... +..+++.++..+.+.|++++|++
T Consensus 104 --------------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 162 (389)
T PRK11788 104 --------------------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAID 162 (389)
T ss_pred --------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHH
Confidence 011245677788888889999999999988875333 66788888899999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 337 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
.++.+.+.+..++... ....+..+...|.+.|++++|...|++
T Consensus 163 ~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 163 VAERLEKLGGDSLRVE-------------------------------------IAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHhcCCcchHH-------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999887543221100 011234455666777777777777777
Q ss_pred cCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 417 IAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 417 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
+.+..|+ ...+..+...|.+.|++++|+++|+++..
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6644443 44566667777777777777777777765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-18 Score=185.27 Aligned_cols=294 Identities=15% Similarity=0.146 Sum_probs=193.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 003273 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDM 400 (834)
Q Consensus 321 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 400 (834)
....+...|++++|+..|+++.+.+ +.+..++..+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------------------------------------------p~~~~~~~~la~~ 78 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------------------------------------------PETVELHLALGNL 78 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------------------------------------------cccHHHHHHHHHH
Confidence 3445567788888888888887632 2233344555555
Q ss_pred HHhCCChHHHHHHHHhcCCCCCC-----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhh
Q 003273 401 YAKCKSVDVARVMFDAIAPKNRD-----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA 475 (834)
Q Consensus 401 y~~~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~ 475 (834)
|.+.|++++|..+++.+....+. ...+..++..|.+.|++++|+.+|+++.+ ..|
T Consensus 79 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~----~~~---------------- 138 (389)
T PRK11788 79 FRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD----EGD---------------- 138 (389)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----CCc----------------
Confidence 66666666666666655432111 13455566666666666666666666654 122
Q ss_pred hHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC------hhHHHHHHHHHHHcCChHHH
Q 003273 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN------VVSWTSLMTGYGMHGLGDKA 547 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A 547 (834)
.+...++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+.+.|+.++|
T Consensus 139 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 139 -------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred -------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 2233344555555555555555555555531 11 11344566667777888888
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 548 HWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR--AEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
...|+++.+ ..|+ ...+..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.+++
T Consensus 200 ~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 200 RALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888777 3454 456666777788888888888888877642 233 45567788888888888888888887
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCchhHHHHHHHHHhcCCccCC
Q 003273 625 M-PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN---AGRWKDVARIRSLMKHTGVKKRP 700 (834)
Q Consensus 625 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~ 700 (834)
+ ...|+...+..+...+...|+.+.|...++++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6 3456666667788888899999999999999999999765 45555555443 56899999999999999888888
Q ss_pred c
Q 003273 701 G 701 (834)
Q Consensus 701 ~ 701 (834)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 6
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-15 Score=164.73 Aligned_cols=548 Identities=13% Similarity=0.076 Sum_probs=374.2
Q ss_pred chhHHHHHHHHHHcCCCCCcccHHHHHHHHc--cCCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChhHHHH
Q 003273 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACG--ELPSSRCGSSVHAVICSSG--FDSNVFVCNALMAMYARCDTLSYARQ 191 (834)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~ 191 (834)
.+.|...|....+.. +++. ...+.++|. ..+++..|..+|..++... ..||+.+. +...+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHH
Confidence 478888888777652 3332 334556664 5578889999999876543 45665543 2356678999999999
Q ss_pred HHHhcCCCCCCCcchHHHHHHHHHhCC---ChhHHHHHHHHhhhCCCCCCCcc-chHhHHHHhhccCCchhhhhcCcHHH
Q 003273 192 LFDEMFQPGICDIVSWNTIVAAYAQSG---DAEGGLMLFARMTGDVKVQGDGV-SLVNALSACASLGTWSRGKQCGMMEE 267 (834)
Q Consensus 192 ~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~-t~~~~l~a~~~~~~~~~~~~~g~~~~ 267 (834)
.|.+..+-+|.++.++-.|.-.-.... .+..++.++...- ...|+.. ..+.+-..+. -.|++..
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay---~~n~~nP~~l~~LAn~fy---------fK~dy~~ 288 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAY---KENNENPVALNHLANHFY---------FKKDYER 288 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHH---hhcCCCcHHHHHHHHHHh---------hcccHHH
Confidence 999988885544444433333323333 3445555555544 3344333 3333334444 3466666
Q ss_pred HHHHHHhcCCC------ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 003273 268 AKKVFERMKVK------DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341 (834)
Q Consensus 268 A~~~~~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 341 (834)
+..+...+... -...|--+..+|-..|++++|...|.+.......--+..+--+...|.+.|+.+.+...|+..
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 66665554422 234588899999999999999999987776533311445566788899999999999999999
Q ss_pred HHCCCCCCH-hHHHHHHHhhhhhc----hhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCCh------HHH
Q 003273 342 QFCGLEPNV-VTLVSLLSGCASVG----ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV------DVA 410 (834)
Q Consensus 342 ~~~g~~pd~-~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~------~~A 410 (834)
.+.. ||. .|...+-..|+..+ ..+.|..+.....+ ..+.|...|-.+..+|....-. ..|
T Consensus 369 ~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~-------~~~~d~~a~l~laql~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 369 LKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE-------QTPVDSEAWLELAQLLEQTDPWASLDAYGNA 439 (1018)
T ss_pred HHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh-------cccccHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8743 554 35544444455443 45666667766666 4477888888888887665433 334
Q ss_pred HHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhccc-CCCCcCCc-----ccHHHHH-HHHhhhhhHHHHHHH
Q 003273 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQ-DKLVKPNA-----FTLSCAL-MACARLAALRFGRQI 483 (834)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~g~~p~~-----~t~~~ll-~a~~~~~~~~~a~~~ 483 (834)
..++..... ..-+...|.+..-+...|++++|...|.+.... ..-..+|. +|...-+ ......++.+.|.++
T Consensus 440 ~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 440 LDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 433333322 246677899999999999999999999998762 00123333 2222233 334556789999999
Q ss_pred HHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-C
Q 003273 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-L 559 (834)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~ 559 (834)
+..+++... .-+..|--|.-+--..+...+|...++... ..++..|+-+...+.....+..|.+-|......- .
T Consensus 519 Yk~Ilkehp--~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 519 YKSILKEHP--GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHHCc--hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 999998654 233333344434444467888999988877 4677788888888888888888888777665532 3
Q ss_pred CCChhHHHHHHHHHHh------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 003273 560 APDGVTFLVLLYACSH------------SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP- 626 (834)
Q Consensus 560 ~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 626 (834)
.+|..+..+|.+.|.. .+..++|+++|.+..+ .-+-+...-+.+.-.++..|++.+|.++|.+..
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 3677777777775543 2456788888887764 334467777788889999999999999999883
Q ss_pred -CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 627 -MEPTPIIWVALLNGCRIHANVELGELAANRLLELE--SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 627 -~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...+..+|-.+...|...|++..|+++|+..++.. .+++.+...|+.++.+.|+|.+|.+........
T Consensus 675 a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 675 ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 22345689999999999999999999999988863 446788899999999999999999988777653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-17 Score=187.65 Aligned_cols=406 Identities=9% Similarity=0.019 Sum_probs=256.1
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHH
Q 003273 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNAL 247 (834)
Q Consensus 168 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l 247 (834)
.++....-.+.+....|+.++|++++.+.....+.+...+..+...+...|++++|+.+|++..+. .|
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P--------- 80 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EP--------- 80 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC---------
Confidence 344444555666667777777777777766533335555777777777777777777777776532 11
Q ss_pred HHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh
Q 003273 248 SACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327 (834)
Q Consensus 248 ~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 327 (834)
.+...+..++..+...|++++|...+++..+..+. +.. |..+...+..
T Consensus 81 ------------------------------~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~ 128 (765)
T PRK10049 81 ------------------------------QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKR 128 (765)
T ss_pred ------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHH
Confidence 23444556666777778888888888887776443 444 7777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCCh
Q 003273 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSV 407 (834)
Q Consensus 328 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 407 (834)
.|+.++|+..++++.+ ..|.+..+...+...+.+.|..
T Consensus 129 ~g~~~~Al~~l~~al~------------------------------------------~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 129 AGRHWDELRAMTQALP------------------------------------------RAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred CCCHHHHHHHHHHHHH------------------------------------------hCCCCHHHHHHHHHHHHHCCCh
Confidence 8888888888877776 3344444555566666677777
Q ss_pred HHHHHHHHhcCCCCCCc------cchHHHHHHH-----HhcCCh---hHHHHHHHhhcccCCCCcCCcccHHHHHHHHhh
Q 003273 408 DVARVMFDAIAPKNRDV------ATWTVMIGSY-----SQNGGA---NDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473 (834)
Q Consensus 408 ~~A~~~f~~~~~~~~~~------~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~ 473 (834)
+.|...++.... .|+. .....++..+ ...+++ ++|++.++.+.+. ....|+...-
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~-~~~~p~~~~~--------- 235 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL-WHDNPDATAD--------- 235 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh-cccCCccchH---------
Confidence 777777776663 3321 0011111111 111223 5566666666541 0112221100
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hh-HHHHHHHHHHHcCChHHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN---VV-SWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~ 549 (834)
........+..+...|++++|...|+.+.+.+ +. .-..+...|...|++++|+.
T Consensus 236 ----------------------~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 236 ----------------------YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred ----------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 00000111223345577788888887776321 11 11124556777888888888
Q ss_pred HHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHhh
Q 003273 550 AFDQMRKEGLAPD-----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG----------ISAR---AEHYACIVDLLGR 611 (834)
Q Consensus 550 l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~l~~~~~~ 611 (834)
.|+++.+. .|. ......+..++...|++++|.++++.+.+... -.|+ ...+..+..++..
T Consensus 294 ~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 294 ILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 88887663 332 23355556677788888888888887764210 1122 2345567778888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 003273 612 ANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 612 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.|++++|++.++++ ...| +...|..+...+...|+.+.|++.++++++++|++...+..++.++...|+|++|..+++
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999888886 2223 466888888888888999999999999999999888888888888899999999999888
Q ss_pred HHHhc
Q 003273 690 LMKHT 694 (834)
Q Consensus 690 ~m~~~ 694 (834)
.+.+.
T Consensus 452 ~ll~~ 456 (765)
T PRK10049 452 DVVAR 456 (765)
T ss_pred HHHHh
Confidence 88764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-15 Score=164.35 Aligned_cols=483 Identities=13% Similarity=0.082 Sum_probs=324.4
Q ss_pred hhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhC-CCCCCCccchHhHHHHhhccCCchhhhhcCc
Q 003273 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQCGM 264 (834)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~ 264 (834)
++.|.+.|.......++|+...-.-.......|++..|+.+|+..... ....||...-.. ..+. ++|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~---------kl~~ 214 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFW---------KLGM 214 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHH---------hccc
Confidence 467777777777666656655444444445566777777777774421 133444322111 1112 5666
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHH------cCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH
Q 003273 265 MEEAKKVFERMKVKDVVSWNAMVTGYS------RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338 (834)
Q Consensus 265 ~~~A~~~~~~~~~~d~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 338 (834)
.+.|+..|.+..+.|+..-++++.... ....+..+..++...-..+.. |++..+.|..-|.-.|++..++.+.
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHH
Confidence 777777777666555544444333211 122345566666555554444 7777777778888888888888888
Q ss_pred HHHHHCCCC--CCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 339 RQMQFCGLE--PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 339 ~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
..+...-.. .-...|-.+-+++-..|+++.|...+-...+. .....+..+--|..+|.+.|+++.|...|+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 777764311 11234666777777888888888888777764 1111244455688999999999999999999
Q ss_pred cCCCCCC-ccchHHHHHHHHhcC----ChhHHHHHHHhhcccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHH----
Q 003273 417 IAPKNRD-VATWTVMIGSYSQNG----GANDALALFPQMFQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAY---- 486 (834)
Q Consensus 417 ~~~~~~~-~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~---- 486 (834)
+....|| ..+.-.+...|+..+ ..+.|..++.+..+ ..| |...|..+-..+.... .......+..
T Consensus 368 v~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~----~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 368 VLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE----QTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDI 442 (1018)
T ss_pred HHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh----cccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHH
Confidence 8766664 455566666666664 45667777776655 223 3445555544443332 2222333333
Q ss_pred HHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------CCh------hHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------RNV------VSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 487 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
+...+-. ..+.+.|.+...+...|++++|...|+.... +|. .+-..+...+-..++.+.|.+.|..
T Consensus 443 L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 443 LESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3345555 7889999999999999999999999987762 232 1223345566677899999999999
Q ss_pred HHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 003273 554 MRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM----PME 628 (834)
Q Consensus 554 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 628 (834)
... ..|+ ...|..++..-...+...+|...++.... ....++..++-+.+.+.+...+..|.+-|+.. ...
T Consensus 522 Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 522 ILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 999 5788 44566666445556888999999998875 45556667888888998888888888754443 344
Q ss_pred CCHHHHHHHHHHHHh------------cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 003273 629 PTPIIWVALLNGCRI------------HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 629 p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 696 (834)
+|..+.-+|.+.|.. .+..+.|++.|.+++..+|.|.-+-+.++-+++..|+|.+|..||.++++...
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 788888888887642 23467888999999999999988889999999999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-16 Score=181.16 Aligned_cols=423 Identities=10% Similarity=-0.028 Sum_probs=232.9
Q ss_pred HHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChh
Q 003273 142 LKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAE 221 (834)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 221 (834)
...+...|+++.|...+...++. .|+...|..+..+|.+.|++++|...++...+.++.+..+|..+..+|...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34444556666666666655543 3455556666666666666666666666665554445556666666666666666
Q ss_pred HHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHH
Q 003273 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFA 301 (834)
Q Consensus 222 ~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 301 (834)
+|+..|.......+..+ .....++.... .......+...++.- ..+...+..+...+ .....+.+..
T Consensus 212 eA~~~~~~~~~~~~~~~--~~~~~~~~~~l---------~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 212 DALLDLTASCIIDGFRN--EQSAQAVERLL---------KKFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHHHHhCCCcc--HHHHHHHHHHH---------HHHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 66666654433211111 11111111100 000012222222221 12222233222222 2111222222
Q ss_pred HHHHhHhcCCCCCeeeHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHH
Q 003273 302 LFKKMRQENVKLNVVTWSAVIAGY---AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIK 378 (834)
Q Consensus 302 l~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 378 (834)
-++.-.+.... ....+..+...+ ...+++++|++.|++..+.+.
T Consensus 279 ~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-------------------------------- 325 (615)
T TIGR00990 279 GLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-------------------------------- 325 (615)
T ss_pred hhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC--------------------------------
Confidence 12211111000 111111111111 234678888888888776431
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 003273 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457 (834)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~ 457 (834)
..+.....++.+...|...|++++|...|++.....|+ ...|..+...+...|++++|+..|++.++ .
T Consensus 326 -------~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----~ 394 (615)
T TIGR00990 326 -------LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK----L 394 (615)
T ss_pred -------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----h
Confidence 11223344555666677777777777777776655554 44667777777777788888888777765 3
Q ss_pred cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHH
Q 003273 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSL 534 (834)
Q Consensus 458 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~l 534 (834)
.| .++.++..+...|...|++++|...|++.. .| +...|..+
T Consensus 395 ~p-----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 395 NS-----------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CC-----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 33 334455566666667777777777776665 22 34556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------h-HHHHHH
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-------A-EHYACI 605 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~-~~~~~l 605 (834)
...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|+...+ +.|+ . ..++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHH
Confidence 6677777777777777777776 4554 56666777777777777777777777653 2222 0 112222
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
...+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33344467888888888775 33444 446777888888888888888888888887664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-17 Score=184.73 Aligned_cols=328 Identities=9% Similarity=-0.006 Sum_probs=211.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhc
Q 003273 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364 (834)
Q Consensus 285 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 364 (834)
.++..+.+.|++++|..+++......+. +...+..++.+....|++++|+..|+++...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-------------------- 105 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAV-------------------- 105 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------------------
Confidence 3455566777777777777777766555 4445555556666677777777777777652
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHH
Q 003273 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDA 443 (834)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 443 (834)
.|.+...+..+...|.+.|++++|...|++.....| +...|..+...+...|++++|
T Consensus 106 ----------------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 106 ----------------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred ----------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH
Confidence 233334444555555555555555555555544333 344455555555556666666
Q ss_pred HHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhc
Q 003273 444 LALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL 523 (834)
Q Consensus 444 ~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 523 (834)
...++++.. ..|+.......+..+...|++++|...+..+.+.... .+......+...+.+.|++++|...|+++
T Consensus 164 ~~~~~~~~~----~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 164 ISLARTQAQ----EVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL-ERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHH----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 655555543 2333322222222344555555555555555443321 22233344566777888888888888877
Q ss_pred C---CCChhHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 524 K---QRNVVSWTSLMTGYGMHGLGDK----AHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 524 ~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
. ..+...+..+...+.+.|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++...+ .
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l 313 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---T 313 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---h
Confidence 6 2355677778888888888875 7888888887 5676 66777888888888888888888888764 3
Q ss_pred CCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 596 SAR-AEHYACIVDLLGRANRLDEAVELIEGMP-MEPTPIIWV-ALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 596 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.|+ ...+..+..+|.+.|++++|.+.++++. ..|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 443 5566778888888888888888888773 446544433 345567888899999999999988888753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=180.09 Aligned_cols=330 Identities=9% Similarity=0.018 Sum_probs=193.9
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 003273 105 ALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD 184 (834)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g 184 (834)
.++..+.+.|++++|+.+++...... +-+...+..++.++...|+.+.|...++.+++.. +.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34556666777777777776666542 2223334444455556667777777777666653 344555666666666777
Q ss_pred ChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCc
Q 003273 185 TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGM 264 (834)
Q Consensus 185 ~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~ 264 (834)
++++|...|++.....+.+...|..+...+...|++++|...++.+... .|+
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~------------------------- 176 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPP------------------------- 176 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCC-------------------------
Confidence 7777777776666554445666666666666777777666666655432 111
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003273 265 MEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC 344 (834)
Q Consensus 265 ~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 344 (834)
+...+..+ ..+.+.|++++|...++.+......++...+..+...+.+.|++++|+..|++..+
T Consensus 177 --------------~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~- 240 (656)
T PRK15174 177 --------------RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA- 240 (656)
T ss_pred --------------CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 11112112 22455666666666666665543332333344445556666666666666666654
Q ss_pred CCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHH----HHHHHHhcCCC
Q 003273 345 GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDV----ARVMFDAIAPK 420 (834)
Q Consensus 345 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~----A~~~f~~~~~~ 420 (834)
..+.+..++..+...|.+.|++++ |...|++....
T Consensus 241 -----------------------------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 241 -----------------------------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 223344555666677777777764 66777766654
Q ss_pred CC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhH
Q 003273 421 NR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFV 499 (834)
Q Consensus 421 ~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 499 (834)
.| +...+..+...+.+.|++++|+..+++.+. ..|+ ++.+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~----l~P~-----------------------------------~~~a 320 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA----THPD-----------------------------------LPYV 320 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCC-----------------------------------CHHH
Confidence 55 345666777777777777777777777665 3442 3334
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC--CCChhH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK--QRNVVS-WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
...+...|.+.|++++|...|+.+. .|+... +..+..++...|+.++|+..|++..+ ..|+
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~ 384 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARAS 384 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChh
Confidence 4455666666777777777776665 343322 23344556667777777777777766 4444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-16 Score=180.94 Aligned_cols=411 Identities=10% Similarity=0.022 Sum_probs=264.3
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhC
Q 003273 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS 217 (834)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~ 217 (834)
..-.++.....|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.....+.+...+..++..+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444555566777777777777666532 344556777777777777777777777776666555666677777777777
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHH
Q 003273 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFE 297 (834)
Q Consensus 218 g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 297 (834)
|++++|+..+++..+. .| .+.. +..+...+...|+.+
T Consensus 97 g~~~eA~~~l~~~l~~---~P---------------------------------------~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 97 GQYDEALVKAKQLVSG---AP---------------------------------------DKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred CCHHHHHHHHHHHHHh---CC---------------------------------------CCHH-HHHHHHHHHHCCCHH
Confidence 7777777777777643 11 2333 555666667777777
Q ss_pred HHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHH
Q 003273 298 DAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377 (834)
Q Consensus 298 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 377 (834)
+|+..++++.+..+. +...+..+...+...|..++|++.++.... .|+.... +. .. .....+
T Consensus 134 ~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~---l~-------~~----~~~~~~ 195 (765)
T PRK10049 134 DELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRD---LE-------AD----AAAELV 195 (765)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHH---HH-------HH----HHHHHH
Confidence 777777777776544 555556666677777777777777765443 2331000 00 00 000000
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHHHhCCCh---HHHHHHHHhcCCC---CCCcc-ch----HHHHHHHHhcCChhHHHHH
Q 003273 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSV---DVARVMFDAIAPK---NRDVA-TW----TVMIGSYSQNGGANDALAL 446 (834)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~---~~~~~-~~----~~li~~~~~~g~~~~A~~l 446 (834)
+ ..+...+...+++ ++|...++.+... .|+.. .+ ...+..+...|++++|+..
T Consensus 196 r----------------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 196 R----------------LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred H----------------hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 0000111112223 5667666666532 23221 11 1113445677999999999
Q ss_pred HHhhcccCCCCc-CCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 003273 447 FPQMFQQDKLVK-PNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ 525 (834)
Q Consensus 447 ~~~m~~~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 525 (834)
|+++.+ .+-. |+. ....+...|...|++++|+..|+++.+
T Consensus 260 ~~~ll~--~~~~~P~~-------------------------------------a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 260 YQRLKA--EGQIIPPW-------------------------------------AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhc--cCCCCCHH-------------------------------------HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 999887 3211 211 111245567777888888888777652
Q ss_pred --CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCCh---hHHHHHHHHHHhcCCHHHHHH
Q 003273 526 --RN-----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-----------LAPDG---VTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 526 --~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~ 584 (834)
|. ...+..+..++...|++++|+.+++++.... -.|+. ..+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 21 2345556667788888888888888887741 12331 234566678889999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 585 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
+++++.. ..+.+...+..+..++.+.|++++|++.+++. ...|+ ...+..+.......|+++.|+..++++++..|
T Consensus 381 ~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 381 RARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999875 33445778889999999999999999999987 34565 55777777788899999999999999999999
Q ss_pred CCCch
Q 003273 663 EKDGS 667 (834)
Q Consensus 663 ~~~~~ 667 (834)
+++.+
T Consensus 459 d~~~~ 463 (765)
T PRK10049 459 QDPGV 463 (765)
T ss_pred CCHHH
Confidence 98754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-13 Score=157.70 Aligned_cols=373 Identities=12% Similarity=0.060 Sum_probs=169.0
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhh
Q 003273 289 GYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLL 368 (834)
Q Consensus 289 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 368 (834)
.|...|++++|+++|+++.+..+. |...+..++..+...++.++|++.++++... .|+...+..++..+...++...
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 344445555555555555544333 3344444444555555555555555554432 1332233222111212222222
Q ss_pred hhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHH
Q 003273 369 GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFP 448 (834)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 448 (834)
+.+.+..+++ ..|.+...+..++....+.|-...|.++..+-+ +..+=...... +.+.|.+..+
T Consensus 188 AL~~~ekll~-------~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p----~~f~~~~~~~l-----~~~~~a~~vr 251 (822)
T PRK14574 188 ALQASSEAVR-------LAPTSEEVLKNHLEILQRNRIVEPALRLAKENP----NLVSAEHYRQL-----ERDAAAEQVR 251 (822)
T ss_pred HHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc----cccCHHHHHHH-----HHHHHHHHHh
Confidence 4444444444 456778888888899999999988888877644 22221110000 0011111111
Q ss_pred hhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCccc-hhHHhHH---HHHHHhcCCHHHHHHHHhhc
Q 003273 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLR-NQYEMLI-PFVANCL---IDMYSRSGDIDTARVVFDNL 523 (834)
Q Consensus 449 ~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~l---i~~y~k~g~~~~A~~~~~~~ 523 (834)
... .|+..- -.+....+.+..-.+.+.. .+-.|+. +....+. +-++.+.|++.++.+.|+.+
T Consensus 252 ~a~------~~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 252 MAV------LPTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred hcc------cccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 110 000000 0000111222222222221 1110011 1111222 22344555555555555555
Q ss_pred CCC--Ch--hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 524 KQR--NV--VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL----AP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 524 ~~~--~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
..+ .+ ..-.++..+|...+++++|+.+|+++....- .| +......|..++...+++++|..+++.+.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 521 11 1233445555555566666666665544210 11 122234455555566666666666655543100
Q ss_pred ----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 595 ----------ISAR---AEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 595 ----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
-.|+ ...+..++..+...|++.+|++.++++. .+-|...+..+...++..|++..|+..++.+..
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 0111 1223334455555666666666665551 112455555555556666666666666666666
Q ss_pred cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 660 LESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 660 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++|++..+...++.++...|+|.+|..+.+...+
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6666666666666666666666666555555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-13 Score=156.58 Aligned_cols=442 Identities=10% Similarity=-0.013 Sum_probs=260.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 003273 147 ELPSSRCGSSVHAVICSSGFDSNV--FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 224 (834)
+.|+...|...+.++++.. |+. .++ .++..+...|+.++|+..+++.....+........+...|...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666666665543 221 233 56666666666666666666665321112222222244556666666666
Q ss_pred HHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHH
Q 003273 225 MLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFK 304 (834)
Q Consensus 225 ~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 304 (834)
++|+++.+. .|+ |...+..++..|.+.++.++|++.++
T Consensus 123 ely~kaL~~---dP~---------------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 123 ALWQSSLKK---DPT---------------------------------------NPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred HHHHHHHhh---CCC---------------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666666543 121 23334444555566666666666666
Q ss_pred HhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhc
Q 003273 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN-VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV 383 (834)
Q Consensus 305 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 383 (834)
++... .|+...+..++..+...++..+|++.++++.+.. |+ ...+..+..+..+.|-...|.++...--.
T Consensus 161 ~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~----- 231 (822)
T PRK14574 161 ELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPN----- 231 (822)
T ss_pred Hhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc-----
Confidence 66554 2233333222222323444444666666666543 33 33344455555555555555444322111
Q ss_pred CCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc-c
Q 003273 384 DGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA-F 462 (834)
Q Consensus 384 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-~ 462 (834)
-+.+..... + ..+.|.+..+.......+. -. +---.+.|+.-++.+... .+-.|.. .
T Consensus 232 --~f~~~~~~~---l-------~~~~~a~~vr~a~~~~~~~------~~---r~~~~d~ala~~~~l~~~-~~~~p~~~~ 289 (822)
T PRK14574 232 --LVSAEHYRQ---L-------ERDAAAEQVRMAVLPTRSE------TE---RFDIADKALADYQNLLTR-WGKDPEAQA 289 (822)
T ss_pred --ccCHHHHHH---H-------HHHHHHHHHhhcccccccc------hh---hHHHHHHHHHHHHHHHhh-ccCCCccch
Confidence 111111111 0 0111111111110000000 00 000124455555554431 1112322 1
Q ss_pred cH----HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---------Chh
Q 003273 463 TL----SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR---------NVV 529 (834)
Q Consensus 463 t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~ 529 (834)
-| .-.+-++...+...++...+..+...+.+ ....+--++.++|...+++++|..+|..+..+ +..
T Consensus 290 ~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~-~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 290 DYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK-MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 11 12344666677777777777777777765 66778889999999999999999999987521 233
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-------------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEG-------------LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
....|.-+|...+++++|..+++++.+.- ..|| ...+..+...+...|++.+|.+.++.+.. .-
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~a 446 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TA 446 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 35678889999999999999999998731 1223 23345566678899999999999999974 34
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 596 SARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
+-|......+.+++...|++.+|++.++.. ...|+ ..+...+..+....+++..|+.+.+.+++..|+++.+
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 457888999999999999999999999876 24455 4566777777888899999999999999999998754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-11 Score=124.62 Aligned_cols=581 Identities=13% Similarity=0.118 Sum_probs=353.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhccc---CCCCcchhhHH------------HHHHHHHh
Q 003273 49 SLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWN------------ALIRRAVR 112 (834)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~~------------~li~~~~~ 112 (834)
++..++.++...+..++.+++ |-.-.+.=-..|++..|+.+..+- -+++. ..|- +++.-.++
T Consensus 266 DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSe--DvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSE--DVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchH--HHHHHHHhcCChHHHHHHHHHHHH
Confidence 677899999999988887776 543333334556666666655432 11111 2221 11111111
Q ss_pred C---------------CCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 003273 113 L---------------RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALM 177 (834)
Q Consensus 113 ~---------------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 177 (834)
. .+...-.+++++.++. -|+.. .|=++.....+.+.|+-++..+++.- +.+...|.
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl--- 414 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLWL--- 414 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH---
Confidence 1 1111112233333322 23322 12233344555566777777766642 33444444
Q ss_pred HHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHh----hhCCCCCCCccchHhHHHHhhcc
Q 003273 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM----TGDVKVQGDGVSLVNALSACASL 253 (834)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~p~~~t~~~~l~a~~~~ 253 (834)
+|++..-++.|..+++...+.=+.+...|-+-...--.+|+.+...++..+- ... |+..+...|..--.+|-.
T Consensus 415 -AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~- 491 (913)
T KOG0495|consen 415 -ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACED- 491 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhh-
Confidence 4555667788888888776654447778877777667788887777776654 334 666666666555555542
Q ss_pred CCchhhhhcCcHHHHHHHHHhcC-----C-CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh
Q 003273 254 GTWSRGKQCGMMEEAKKVFERMK-----V-KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327 (834)
Q Consensus 254 ~~~~~~~~~g~~~~A~~~~~~~~-----~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 327 (834)
.|.+.....+..... + .--.+|+.-.+.|.+.+.++-|..+|....+--+. +...|...+..--.
T Consensus 492 --------agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 492 --------AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKS 562 (913)
T ss_pred --------cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHh
Confidence 233333333322221 1 12346777777777777777777777777665433 55666666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCC
Q 003273 328 RGHGHEALDVFRQMQFCGLEPNVV-TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406 (834)
Q Consensus 328 ~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 406 (834)
.|..++-..+|++....- |-.. .+.....-.-..|++..++.++..+.. ..+.+..++-+-+..-.....
T Consensus 563 hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~-------~~pnseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFE-------ANPNSEEIWLAAVKLEFENDE 633 (913)
T ss_pred cCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-------hCCCcHHHHHHHHHHhhcccc
Confidence 677777777777776532 2111 111112222333455555555544444 223344444444444445555
Q ss_pred hHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHH
Q 003273 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAY 486 (834)
Q Consensus 407 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 486 (834)
++.|+.+|.+.....++...|.--+..---.++.++|++++++.
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~------------------------------------ 677 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEA------------------------------------ 677 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHH------------------------------------
Confidence 55555555444433344444443333333344444444444444
Q ss_pred HHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-C
Q 003273 487 VLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-D 562 (834)
Q Consensus 487 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 562 (834)
++.- + .-...|-.+...|-+.++++.|...|..-.+ |+ +..|-.+...--+.|..-.|..++++.+-. .| |
T Consensus 678 -lk~f-p-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~ 752 (913)
T KOG0495|consen 678 -LKSF-P-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKN 752 (913)
T ss_pred -HHhC-C-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCc
Confidence 4332 1 4455667777778888888888888876652 43 456777777777788888888888888773 45 4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCR 642 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 642 (834)
...|...+..-.+.|+.+.|..+..+..+ ..+.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-+....+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 77788888888888888888888887776 455667778888888888888777777777765 45555556666677
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeC
Q 003273 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGK 708 (834)
Q Consensus 643 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 708 (834)
...+++.|.+-|+++++.+|++-.++..+-..+...|.-++-.++++.-... .+.-|..|..+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 7888999999999999999999999999999999999988888888877654 344566776443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-12 Score=129.08 Aligned_cols=447 Identities=11% Similarity=0.090 Sum_probs=265.1
Q ss_pred hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHH--HccCCCchHH-HHHHHHHHHhCCCCchhHHHHH
Q 003273 100 VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA--CGELPSSRCG-SSVHAVICSSGFDSNVFVCNAL 176 (834)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L 176 (834)
+.+=|.|+.. ..+|...++.-+|+.|...|+..+...-..|++. |-...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666654 4578889999999999999887777665555543 2233333322 23334444444 2333333
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCc
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~ 256 (834)
|.|.+.+ -+|+..++ ...+|.+||.|+|+--..+.|.+++++-... ..+.+..+|+.+|.+.+-
T Consensus 191 -----K~G~vAd--L~~E~~PK----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK----TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred -----ccccHHH--HHHhhcCC----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----
Confidence 3455444 44555444 6778999999999999999999999998877 667777777777776441
Q ss_pred hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhH---
Q 003273 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHE--- 333 (834)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~--- 333 (834)
.. -.++..+|....++||..|+|+++++..+.|+++.
T Consensus 255 ----------------------------------~~------~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~ 294 (625)
T KOG4422|consen 255 ----------------------------------SV------GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK 294 (625)
T ss_pred ----------------------------------hc------cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH
Confidence 11 14455666666666666666666666666665543
Q ss_pred -HHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhh-hHHHHHHHHHh--hhcCCCCCChhhHHHHHHHHHHhCCChHH
Q 003273 334 -ALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG-KETHCYTIKRV--LSVDGSHPDDLMVINALIDMYAKCKSVDV 409 (834)
Q Consensus 334 -A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a-~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 409 (834)
|++++.+|++-|+.|...+|..+|.-+.+.++.... ..+...+.... ...++..+.|...+...++.+.+..+.+-
T Consensus 295 aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L 374 (625)
T KOG4422|consen 295 AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL 374 (625)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence 445566666666666666666666666655554332 11222221110 11222345566777778888888889999
Q ss_pred HHHHHHhcCCCC------CC---ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHH
Q 003273 410 ARVMFDAIAPKN------RD---VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 410 A~~~f~~~~~~~------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 480 (834)
|.++-.-..... ++ ..-|..+....++....+.-+.+|+.|.- .-+-|+..+...+++|....+.++..
T Consensus 375 A~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP--~~y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 375 AYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP--SAYFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred HHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ceecCCchhHHHHHHHHhhcCcchhH
Confidence 988876654321 22 23356677788889999999999999987 77889999999999999999999999
Q ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHH--cCChHHHHHHHHHHHHc
Q 003273 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGM--HGLGDKAHWAFDQMRKE 557 (834)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~ 557 (834)
..++..++..|.. ....+.. +.+.++-+-. .|+...-..+-...++ ..-.+.....-.+|.+.
T Consensus 453 pRiw~D~~~~ght-~r~~l~e-------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 453 PRIWKDSKEYGHT-FRSDLRE-------------EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHHHHHhhhh-hhHHHHH-------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999888877644 2222111 1122221111 2332222222222111 11111122222344443
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHH---HHHHhhcCCHHHHHHHHHhC
Q 003273 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI---VDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 558 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~ 625 (834)
.. .....+.++..+.+.|..++|.++|....++.+-.|.....++| ++.-.+......|...++-|
T Consensus 519 ~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 519 DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 33344455555677778888887777775544444444344433 33334445555555555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-13 Score=134.91 Aligned_cols=246 Identities=15% Similarity=0.189 Sum_probs=188.6
Q ss_pred HHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhC
Q 003273 86 ALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165 (834)
Q Consensus 86 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (834)
|.-+|+..|..+ .++..||.++++....+.|.+++++......+.+..+||.+|.+-. +..++.+..+|+...
T Consensus 196 AdL~~E~~PKT~---et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 ADLLFETLPKTD---ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HHHHHhhcCCCc---hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 334555555444 7899999999999999999999999988888999999999998764 334488999999999
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHH----HHHHhcCCCCC-CCcchHHHHHHHHHhCCChhH-HHHHHHHhhhC-C--CC
Q 003273 166 FDSNVFVCNALMAMYARCDTLSYAR----QLFDEMFQPGI-CDIVSWNTIVAAYAQSGDAEG-GLMLFARMTGD-V--KV 236 (834)
Q Consensus 166 ~~~~~~~~~~Li~~~~~~g~~~~A~----~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~-~--~~ 236 (834)
..||.+++|++++..++.|+++.|+ +++.+|++-|+ |...+|..+|..+++.++..+ |..++.++... . .+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 9999999999999999999988765 56678889997 799999999999999998754 55555554321 0 23
Q ss_pred CC----CccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC--------C---ChhHHHHHHHHHHcCCCHHHHHH
Q 003273 237 QG----DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--------K---DVVSWNAMVTGYSRIGSFEDAFA 301 (834)
Q Consensus 237 ~p----~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~--------~---d~~~~~~li~~~~~~g~~~~A~~ 301 (834)
+| |..-|...+..|..+.+ .+-|.++..-... + ...-|..+....++....+.-..
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d---------~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRD---------LELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhh---------HHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45567888888985544 4444444332221 1 22346677777888888888899
Q ss_pred HHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003273 302 LFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347 (834)
Q Consensus 302 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 347 (834)
.|+.|.-+-+-|+..+...++++....|.++-.-+++.+|+..|..
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 9999888777788888888888888888888888888888876643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-12 Score=135.93 Aligned_cols=546 Identities=10% Similarity=0.055 Sum_probs=349.1
Q ss_pred CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 003273 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQL 192 (834)
Q Consensus 113 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~ 192 (834)
.|+.++|..++.+.++.. +-....|..|-..+-..|+.+.+...+-.+.-.. +.|...|..+.....+.|++++|+-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 488888888888887753 4455678888888888888887766554443332 55667888888888888888888888
Q ss_pred HHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhH----HHHhhccCCchhhhhcCcHHHH
Q 003273 193 FDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNA----LSACASLGTWSRGKQCGMMEEA 268 (834)
Q Consensus 193 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~----l~a~~~~~~~~~~~~~g~~~~A 268 (834)
|.+..+..|++...+---+..|-+.|+...|.+.|.++.+. ....|..-+... +..+. ..+.-+.|
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~-~p~~d~er~~d~i~~~~~~~~---------~~~~~e~a 299 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL-DPPVDIERIEDLIRRVAHYFI---------THNERERA 299 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHH---------HhhHHHHH
Confidence 88888887767665555677788888888888888888754 111111222222 22222 33344666
Q ss_pred HHHHHhcCC-----CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCC----------------------CeeeHHH-
Q 003273 269 KKVFERMKV-----KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL----------------------NVVTWSA- 320 (834)
Q Consensus 269 ~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------------------~~~~~~~- 320 (834)
.+.++.... -+...++.++..|.+...++.|......+..+...+ +..+|+.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 666665442 245678899999999999999999888877622222 2222222
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHH
Q 003273 321 ---VIAGYAQRGHGHEALDVFRQMQFCG--LEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVIN 395 (834)
Q Consensus 321 ---li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (834)
++-++.+....+....+.....+.. +.-+...|.-+..++...|.+.+|..++..+... ....+..+|-
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~~~~~vw~ 453 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR------EGYQNAFVWY 453 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC------ccccchhhhH
Confidence 2233444444444444444455555 4445567888999999999999999999999876 4445678999
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccC------CCCcCCcccHHHHH
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQD------KLVKPNAFTLSCAL 468 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------~g~~p~~~t~~~ll 468 (834)
-+..+|...|.++.|.+.|+.+....|+ ...--+|-+.|.+.|++++|++.+..+..-+ .+..|+........
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998866663 4455667778899999999999999975311 22334444444444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCC---------------------CccchhHHhHHHHHHHhcCCHHHHHHHHhhc----
Q 003273 469 MACARLAALRFGRQIHAYVLRNQY---------------------EMLIPFVANCLIDMYSRSGDIDTARVVFDNL---- 523 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~---- 523 (834)
..+.+.|+.++-..+-..++.... .+........++.+-.+.++.....+-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 555566665554433333321100 0011222233444444444432222221111
Q ss_pred ----CCCChhHH----HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Chh---HH-HHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 524 ----KQRNVVSW----TSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGV---TF-LVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 524 ----~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~---t~-~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
..-...-| .-++..+++.+++++|+.+...+.+.-+.- +.. .+ ...+.++...+++.+|..+++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11122233 345667889999999999999988754221 222 22 344557778899999999999998
Q ss_pred HhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 591 KEFGISAR---AEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNG--CRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 591 ~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
..++...+ ...|++....+.+.|+-.-=..++... ...|+....-.++.+ ....+.+.-|...+-++....|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 76555433 345676666666666554444454444 222332122223333 345566778999999999999999
Q ss_pred CchHHHHHHHHH
Q 003273 665 DGSYTLLSNIYA 676 (834)
Q Consensus 665 ~~~~~~l~~~~~ 676 (834)
|.+-.+++-++.
T Consensus 774 Pl~nl~lglafi 785 (895)
T KOG2076|consen 774 PLINLCLGLAFI 785 (895)
T ss_pred cHHHHHHHHHHH
Confidence 887777766654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-11 Score=123.10 Aligned_cols=568 Identities=13% Similarity=0.093 Sum_probs=381.9
Q ss_pred HHHHHhcccCCCCCCc-hhHHHHHhcc--ChHHHHHHHHHHHHhcCCCCCchHHHHHHhhCCCc----hhHHHHhcccCC
Q 003273 23 FTNIKLFSVTTTPCIK-ITSLLLRQCK--SLTQVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAP----SPALSLLQRISP 95 (834)
Q Consensus 23 ~~~~~~~~~~~~~~~~-~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~f~~~~~ 95 (834)
+++.+.+...|..--+ .----|.+|. ..+.++.+.+..++..+.+. ..+.+.-++ ..-.+++.+..+
T Consensus 301 l~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv------~lW~kA~dLE~~~~~K~RVlRKALe 374 (913)
T KOG0495|consen 301 LSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSV------RLWLKAADLESDTKNKKRVLRKALE 374 (913)
T ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCCh------hhhhhHHhhhhHHHHHHHHHHHHHH
Confidence 4455555666655333 2222344444 45667777777776654432 222222222 222333433322
Q ss_pred CCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHH
Q 003273 96 SPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174 (834)
Q Consensus 96 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (834)
..+ ++..|-+ .+.....+.|.-++.+..+. ++.+. -|..++++...++.|+.++....+. ++.+..+|.
T Consensus 375 ~iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWi 444 (913)
T KOG0495|consen 375 HIPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWI 444 (913)
T ss_pred hCCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHH
Confidence 222 2244543 34455566677777776653 22222 2444555666667777777776654 466667776
Q ss_pred HHHHHHHhCCChhHHHHHHHh----cCCCCCC-CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCC--ccchHhHH
Q 003273 175 ALMAMYARCDTLSYARQLFDE----MFQPGIC-DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGD--GVSLVNAL 247 (834)
Q Consensus 175 ~Li~~~~~~g~~~~A~~~~~~----m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~~l 247 (834)
+-...=-..|+.+...++.++ +...|+. +...|-.=...+-..|..--+..+.+....- |+... ..||...-
T Consensus 445 taa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da 523 (913)
T KOG0495|consen 445 TAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDA 523 (913)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhH
Confidence 666666677777777777654 2333432 5566766666676677766666666666544 44332 34666666
Q ss_pred HHhhccCCchhhhhcCcHHHHHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHH
Q 003273 248 SACASLGTWSRGKQCGMMEEAKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG 324 (834)
Q Consensus 248 ~a~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 324 (834)
..|. +.+.++-|+.+|.... ..+...|...+..--..|..++-..+|++....-++ ..+.|-....-
T Consensus 524 ~~~~---------k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake 593 (913)
T KOG0495|consen 524 QSCE---------KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE 593 (913)
T ss_pred HHHH---------hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence 6666 5556666666665544 235667777777667778888888888888776443 55667666777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhC
Q 003273 325 YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 404 (834)
+-..|+...|..++....+.... +...+...+..-.....++.++.++..+. ...++..+|.--+..---.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar--------~~sgTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR--------SISGTERVWMKSANLERYL 664 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh--------ccCCcchhhHHHhHHHHHh
Confidence 77788888888888887775432 45566666777777788888888888776 3467778888888888888
Q ss_pred CChHHHHHHHHhcCCCCCCc-cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHH
Q 003273 405 KSVDVARVMFDAIAPKNRDV-ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483 (834)
Q Consensus 405 g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 483 (834)
+..++|.+++++..+.-|+- -.|-.+.+.+-+.++.+.|.+.|..-.+ ..|
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k----~cP------------------------ 716 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK----KCP------------------------ 716 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc----cCC------------------------
Confidence 99999999999887655664 4566666777777777777777765544 344
Q ss_pred HHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003273 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560 (834)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 560 (834)
..+.++-.|...=-+.|.+-.|+.+|++.. ..|...|-..|..-.+.|+.+.|..+..+.++. .+
T Consensus 717 -----------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp 784 (913)
T KOG0495|consen 717 -----------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CP 784 (913)
T ss_pred -----------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 445566677777778888999999999876 347789999999999999999999999998884 33
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003273 561 PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALL 638 (834)
Q Consensus 561 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 638 (834)
.+...|..-|...-+.++-......++ ..+-|+.+.-.+..++....+++.|.+.|.+. ...|| ..+|.-+.
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 346778777777777666444443332 34456677888888999999999999999987 44455 56898899
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
..+.+||.-+.-.+++.+...-+|..-..+...+
T Consensus 859 kfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 9999999999999999999999998665554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-11 Score=128.02 Aligned_cols=610 Identities=12% Similarity=0.024 Sum_probs=353.2
Q ss_pred cChHHHHHHHHHHHHhcCCCCC-chHHHHHHhhCCCchhHHHHhccc---CCCCcchhhHHHHHHHHHhCCCchhHHHHH
Q 003273 48 KSLTQVYLIHQQIIVQNLTHVP-PSHLIAAYVSHNAPSPALSLLQRI---SPSPFSVFWWNALIRRAVRLRLPDNAFRLF 123 (834)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 123 (834)
++++.|..+...+++..+.... |..|...|-..|+.+.+...+--. .+.+. .-|-.+-.-..+.|++.+|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHHHHH
Confidence 4888999999999988776666 899999999999999998876554 34444 78888888888999999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchh----HHHHHHHHHHhCCChhHHHHHHHhcCCC
Q 003273 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF----VCNALMAMYARCDTLSYARQLFDEMFQP 199 (834)
Q Consensus 124 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 199 (834)
.+.++.. +++....-.-...|-+.|+...|..-+.++.....+.|.. .--..++.|...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9988753 3343334445566778899999999998888764222222 2223455666777778888888877663
Q ss_pred --CCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHh-------HHHHhhccCCchhhhhcCcHHHHHH
Q 003273 200 --GICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN-------ALSACASLGTWSRGKQCGMMEEAKK 270 (834)
Q Consensus 200 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-------~l~a~~~~~~~~~~~~~g~~~~A~~ 270 (834)
+..+...+|.++..|.+...++.|......+... ..++|...+.+ ....|.. |
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~----------~------- 371 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEV----------G------- 371 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccC----------C-------
Confidence 2336667889999999999999999998888763 33333332210 0000000 0
Q ss_pred HHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcC--CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003273 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN--VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 271 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 348 (834)
.-...+..+ -.+.-++.+....+....+.....+.+ +.-++..|.-+..+|.+.|++.+|+.+|..+.....--
T Consensus 372 ---~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 372 ---KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ---CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 000112222 111112222222222222222233333 22233444455555555555555555555555443333
Q ss_pred CHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc----
Q 003273 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV---- 424 (834)
Q Consensus 349 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~---- 424 (834)
+...|-.+..++-..+..+.|.+.+..++. ..|.+..+-..|...|-+.|+.++|.+.+..+. .||.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e 518 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALETLEQII--NPDGRNAE 518 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCCccchh
Confidence 344455555555555555555555555554 345555666667777777777777777777765 3331
Q ss_pred -cch-------HHHHHHHHhcCChhHHHHHHHhhcccC--------------------CCCcCCcccHHHHHHHHhhhhh
Q 003273 425 -ATW-------TVMIGSYSQNGGANDALALFPQMFQQD--------------------KLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 425 -~~~-------~~li~~~~~~g~~~~A~~l~~~m~~~~--------------------~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
..| -.....|.+.|+.++-+..-..|+... .+..-...+...+..+-.+.++
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 598 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD 598 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc
Confidence 111 223344566677666555444443200 0011111112222222222222
Q ss_pred H---HHHHHHH---HHHHHhCCCccch-hHHhHHHHHHHhcCCHHHHHHHHhhcCCC-----Chh----HHHHHHHHHHH
Q 003273 477 L---RFGRQIH---AYVLRNQYEMLIP-FVANCLIDMYSRSGDIDTARVVFDNLKQR-----NVV----SWTSLMTGYGM 540 (834)
Q Consensus 477 ~---~~a~~~~---~~~~~~~~~~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~----~~~~li~~~~~ 540 (834)
. +.+..-. ....-.++...+- ..+.-++...++.++.++|..+...+..- +.. .-..++.+...
T Consensus 599 ~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~ 678 (895)
T KOG2076|consen 599 DNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLY 678 (895)
T ss_pred hHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHh
Confidence 1 1111111 1111223221111 34566788999999999999999888732 221 33456677788
Q ss_pred cCChHHHHHHHHHHHHc-C--CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHH--HHHHHHHHhhcCC
Q 003273 541 HGLGDKAHWAFDQMRKE-G--LAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEH--YACIVDLLGRANR 614 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~-g--~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~l~~~~~~~g~ 614 (834)
.+++..|...++.|+.. + ..|.. ..|+...+.....++-.-=.+++..+ ....|+-.+ +......+..++.
T Consensus 679 ~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~---~~~~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 679 ARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL---LVKNKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCccCCcceeeeechhHhhccc
Confidence 99999999999999874 1 13443 33444555555554433222222222 122233212 2222334567888
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHH-H----------HhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCC
Q 003273 615 LDEAVELIEGM-PMEPTPIIWVALLNG-C----------RIHANVELGELAANRLLELESE--KDGSYTLLSNIYANAGR 680 (834)
Q Consensus 615 ~~~A~~~~~~~-~~~p~~~~~~~ll~~-~----------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 680 (834)
+..|+..+-+. ...||....+-+++. + .+|-.+-.|.....+..++.-. ...+.+.++.+|-..|-
T Consensus 756 ~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl 835 (895)
T KOG2076|consen 756 FKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL 835 (895)
T ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence 88888766554 233554444433333 1 2333455677777777777533 56789999999999999
Q ss_pred chhHHHHHHHHHhc
Q 003273 681 WKDVARIRSLMKHT 694 (834)
Q Consensus 681 ~~~a~~~~~~m~~~ 694 (834)
..-|..++++..+.
T Consensus 836 ~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 836 VHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-12 Score=126.57 Aligned_cols=488 Identities=14% Similarity=0.068 Sum_probs=278.5
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHH-HHHHHHccCCCchHHHHHHHHHHHhCCCCc----hhHHHHHHHHH
Q 003273 106 LIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFP-FVLKACGELPSSRCGSSVHAVICSSGFDSN----VFVCNALMAMY 180 (834)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~~ 180 (834)
|.+.|..+..+.+|+..|+-..+...-|+.-.+- .+-+.+.+.+.+..|..++...+..-...+ ..+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4556777778889999998887776666654332 234556677778888888887776421111 33455555667
Q ss_pred HhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
.+.|.+++|+.-|+...+..+.=...+|.+| .+..-|+.++..+.|.+|... ...||..-|..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~i-p~~~dddkyi~--------------- 349 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKLIDI-PGEIDDDKYIK--------------- 349 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHHhcC-CCCCCcccccC---------------
Confidence 8889999999999987665442333455444 445568888888899998866 44444332210
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 340 (834)
.-..|+....|.-|. + +.++.|..++- .+.++++-.-.+
T Consensus 350 -------------~~ddp~~~ll~eai~----n-------d~lk~~ek~~k-----------------a~aek~i~ta~k 388 (840)
T KOG2003|consen 350 -------------EKDDPDDNLLNEAIK----N-------DHLKNMEKENK-----------------ADAEKAIITAAK 388 (840)
T ss_pred -------------CcCCcchHHHHHHHh----h-------HHHHHHHHhhh-----------------hhHHHHHHHHHH
Confidence 000122222222111 0 01111211100 001111111111
Q ss_pred HHHCCCCCCHhH-HHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 003273 341 MQFCGLEPNVVT-LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419 (834)
Q Consensus 341 m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 419 (834)
+..--+.||... +...+...-.....+.+.. .--.-..-|.+.|+++.|.++++-...
T Consensus 389 iiapvi~~~fa~g~dwcle~lk~s~~~~la~d---------------------lei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 389 IIAPVIAPDFAAGCDWCLESLKASQHAELAID---------------------LEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HhccccccchhcccHHHHHHHHHhhhhhhhhh---------------------hhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 111111111100 0000000000000000000 000111223444555555444444432
Q ss_pred CCC---CccchHHHHHHHHhc-CChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcc
Q 003273 420 KNR---DVATWTVMIGSYSQN-GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495 (834)
Q Consensus 420 ~~~---~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 495 (834)
+.. +...-|.-.--|.+- .++..|.+.-+..+..+ .. +....+.--+.....|+++.|...+...+...-. .
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ry--n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c 523 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RY--NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-C 523 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-cc--CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-H
Confidence 110 001111111111221 22333433333332200 00 0000000001111234555555555555443221 1
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLY 571 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 571 (834)
...+| .+.-.+-+.|++++|++.|-++. ..+....-.+.+.|....+...|++++-+... +-|+ +....-|..
T Consensus 524 ~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHH
Confidence 22222 23345778899999999998765 56777777888899999999999999988776 5665 777888899
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCcHHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNGC-RIHANVEL 649 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~~ 649 (834)
.|-+.|+-.+|.+++-.--+ -++-+.++...|..-|....-+++|+.+|++. .+.|+..-|..++..| ++.|++..
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999998764432 45667888888999999999999999999998 4789999999999987 67899999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIYANAGRW 681 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 681 (834)
|...|+..-...|+|....-.|..++...|.-
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999988864
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-11 Score=118.74 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=159.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 570 (834)
--+.+...+.+-|+-.++.++|...|++..+ .....|+.|..-|....+...|++-+++.++ +.| |-..|..|.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLG 405 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLG 405 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhh
Confidence 3455667778888888999999999998874 3456899999999999999999999999998 777 688899999
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANV 647 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 647 (834)
.+|.-.+...-|+-+|++.. .++| |...|.+|.++|.+.++++||++.|.+.- ...+...+..|...+...++.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred HHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999886 4555 57899999999999999999999998873 223457888899999999999
Q ss_pred HHHHHHHHHHHh-------cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 648 ELGELAANRLLE-------LESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 648 ~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
++|...+++.++ .+|+...+...|++-+.+.++|++|...-....
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999999999887 344444566678888999999999988766553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-09 Score=110.11 Aligned_cols=494 Identities=13% Similarity=0.111 Sum_probs=351.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
...|-...+.=...+++..|+.+|++....+..+...|--.+..=.++.....|..++++.... -...|..-|--+. .
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y-m 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY-M 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH-H
Confidence 3344444444445667777888888877665557777888888888888888888888887643 1112222221111 1
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcC--CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMK--VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ 327 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 327 (834)
-- ..|++..|+++|++-. +||...|++.|+.=.+-+..+.|..++++..-. .|++.+|--...-=.+
T Consensus 151 EE---------~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 151 EE---------MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEK 219 (677)
T ss_pred HH---------HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHh
Confidence 00 4678888999998754 789999999999999999999999999998764 5899999888888889
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhh----hhchhhhhhHHHHHHHHHhhhcCCCCCCh--hhHHHHHHHHH
Q 003273 328 RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRVLSVDGSHPDD--LMVINALIDMY 401 (834)
Q Consensus 328 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~y 401 (834)
+|...-|..+|....+. -.|...-..++.+++ ....++.++-++..++.+ .|.+ ...+..+...=
T Consensus 220 ~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-------~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-------IPKGRAEELYKKYTAFE 290 (677)
T ss_pred cCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCcccHHHHHHHHHHHH
Confidence 99999999999887653 123333344444544 456788899999999885 3333 55666666666
Q ss_pred HhCCChHHHHHH--------HHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc-------ccHH
Q 003273 402 AKCKSVDVARVM--------FDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA-------FTLS 465 (834)
Q Consensus 402 ~~~g~~~~A~~~--------f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-------~t~~ 465 (834)
-+.|+...-.++ ++.+...+| |-.+|--.+..--..|+.+...++|++.+. +++|-. ..|.
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa---nvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA---NVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc---cCCchhHHHHHHHHHHH
Confidence 666664433322 344443344 777888888888888999999999999985 466632 1232
Q ss_pred HHHHHH---hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHH----hcCCHHHHHHHHhhcC--CCChhHHHHHHH
Q 003273 466 CALMAC---ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS----RSGDIDTARVVFDNLK--QRNVVSWTSLMT 536 (834)
Q Consensus 466 ~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~~li~ 536 (834)
-+=-+| ....+.+.+++++...++. ++ ....++.-+=-||+ ++.++..|.+++.... .|-.-++...|.
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IP-HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IP-HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC-cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 222233 3457889999999998882 22 55556655555554 6789999999999877 577778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 615 (834)
.-.+.++++.+..++++.++ ..| |..+|......-...|+.+.|..+|+..+....++.....|-+.||.=...|.+
T Consensus 446 lElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 88899999999999999999 667 478888888878889999999999999887545555566788889999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHH-----hcC-----------cHHHHHHHHHHHHhc----CCCCC--chHHHHH
Q 003273 616 DEAVELIEGMP-MEPTPIIWVALLNGCR-----IHA-----------NVELGELAANRLLEL----ESEKD--GSYTLLS 672 (834)
Q Consensus 616 ~~A~~~~~~~~-~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~ 672 (834)
+.|..++++.. ..+...+|-++..--. ..+ +...|..+|+++... .|... ......-
T Consensus 524 ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~ 603 (677)
T KOG1915|consen 524 EKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWK 603 (677)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999883 3345558877765532 334 567788888887664 33211 2233444
Q ss_pred HHHHhcCCchhHHHHHHHHH
Q 003273 673 NIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 673 ~~~~~~g~~~~a~~~~~~m~ 692 (834)
++=...|.-.+...|-+.|-
T Consensus 604 ~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 604 NMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHhcCchhhHHHHHHhcc
Confidence 55566677777777777764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=124.51 Aligned_cols=211 Identities=14% Similarity=0.170 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAF 551 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 551 (834)
|+.-.+.+-++.+++.... .+..|--+..+|....+.++-.+.|+... ..|+.+|..-...+.-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 5566666777777765543 33336667778899999999999999887 345667777677777788999999999
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003273 552 DQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP 629 (834)
Q Consensus 552 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 629 (834)
++.+. +.|+ ...|..+-.+..+.+.++++...|+..++ .++--++.|+-....+...++++.|.+.|+.. ..+|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 7886 77888888888999999999999999986 55666788999999999999999999999876 3333
Q ss_pred C---------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 630 T---------PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 630 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
+ +.+-.+++-.- -.+|+..|+..++++++++|....+|..|+.+-...|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 33333443333 33899999999999999999999999999999999999999999998764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-10 Score=122.05 Aligned_cols=266 Identities=14% Similarity=0.073 Sum_probs=160.6
Q ss_pred HHHHhcCCCCC--chHHHHHHhhCCCchhHHHHhcccCCCCc--chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCC
Q 003273 59 QIIVQNLTHVP--PSHLIAAYVSHNAPSPALSLLQRISPSPF--SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPD 134 (834)
Q Consensus 59 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 134 (834)
.+-..|+.|+. +.+|+.-|+..|+.+.|- +|.-|.-++. +...++.++.+..+.++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 34445555555 666666666666666665 5655543322 2244566666665555555443 455
Q ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCC-C-CCCcchHHHHHH
Q 003273 135 EYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP-G-ICDIVSWNTIVA 212 (834)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~li~ 212 (834)
+.||..++.+|...||+.. |+...+ -.-.++..+...|.-..-..++-.+... + .||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 5566666666666666544 222111 1112222233333333333333332211 1 12332 2344
Q ss_pred HHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC-CChhHHHHHHHHHH
Q 003273 213 AYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV-KDVVSWNAMVTGYS 291 (834)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~d~~~~~~li~~~~ 291 (834)
-..-.|.++.+++++..+.......|-.+ ++.-|.. ....+++-...-....+ ++..+|.+++..-.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~--------~ntpvekLl~~cksl~e~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--------DNTPVEKLLNMCKSLVEAPTSETLHAVLKRAL 215 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhcc--------CCchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 45556677777777766653211222111 2444432 12234444444444444 89999999999999
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 292 RIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
-.|+.+.|..++.+|.++|+..+.+-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+.--+-.+.+.|..
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999999999999888888776 788888999999999999999999999888777765543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=142.82 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFD 552 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 552 (834)
++.+.+.+.+..+...+. .++..+..++.. ...+++++|.+++.... .++...|..++..+.+.|+++++..+++
T Consensus 58 ~~~~~A~~ay~~l~~~~~--~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDK--ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccccccccccccccccc--cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444333322 344455666666 67889999998887764 4566778888888999999999999999
Q ss_pred HHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CC
Q 003273 553 QMRKEG-LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMP--ME 628 (834)
Q Consensus 553 ~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 628 (834)
+..... ..++...|..+...+.+.|+.++|.+.++...+ ..|+ ......++.++...|+.+++.++++... .+
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 987643 234567788888889999999999999999874 4564 7788899999999999999888877662 13
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
.|+..|..+..++...|+.+.|...++++.+.+|+|+.....+++++...|+.++|.++++...
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667899999999999999999999999999999999999999999999999999999988764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-10 Score=125.13 Aligned_cols=539 Identities=12% Similarity=0.035 Sum_probs=296.7
Q ss_pred CCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHH
Q 003273 95 PSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCN 174 (834)
Q Consensus 95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (834)
.|+. ++|.++|..|+..|+.+.|- +|..|.-.+.+.+...|+.++.+....++.+.++ .|...+|+
T Consensus 22 ~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 22 LPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred CCch--hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 3455 77777777777777777766 7777776666666677777777766666665554 56667777
Q ss_pred HHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC
Q 003273 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254 (834)
Q Consensus 175 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~ 254 (834)
.|...|...|++.. |+...+. .-.++..+...|.......++..+....+.-||..+...++-
T Consensus 88 ~Ll~ayr~hGDli~----fe~veqd-------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv------ 150 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL----FEVVEQD-------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV------ 150 (1088)
T ss_pred HHHHHHHhccchHH----HHHHHHH-------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH------
Confidence 77777777777655 3332221 233444555566555566666555444455666555433322
Q ss_pred CchhhhhcCcHHHHHHHHHhcCCC--C-hhHHHHHHHHHHc-CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCC
Q 003273 255 TWSRGKQCGMMEEAKKVFERMKVK--D-VVSWNAMVTGYSR-IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH 330 (834)
Q Consensus 255 ~~~~~~~~g~~~~A~~~~~~~~~~--d-~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 330 (834)
-.|.++.+.+++..++.. + +... +++-... ...+++-........+ .|+..+|.+++..-.-+|+
T Consensus 151 ------~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 151 ------LEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred ------HHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 235567777777666631 1 1111 2333222 2234444444444433 5799999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHH
Q 003273 331 GHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410 (834)
Q Consensus 331 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 410 (834)
.+.|..++.+|.+.|+..+..-|..++-+ .++......+..-+... |..|+..++..-+-...+.|....+
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~------gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK------GVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh------cCCCCcchhHHHHHhhhcchhhhhc
Confidence 99999999999999999999988888877 56666667777777777 8888888887766666665543222
Q ss_pred HHHHHhcCCCCCCccchHHHHHHHHhcCChh-----HHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHH
Q 003273 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGAN-----DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485 (834)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 485 (834)
....+.-. +-+...+..+..+...+.+.+ -.+..+.+-.- .|+.-....| ++..-....|.-+...++-.
T Consensus 291 ~e~sq~~h--g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fL--lg~d~~~aiw-s~c~~l~hQgk~e~veqlvg 365 (1088)
T KOG4318|consen 291 EEGSQLAH--GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFL--LGTDILEAIW-SMCEKLRHQGKGEEVEQLVG 365 (1088)
T ss_pred ccccchhh--hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHH--hccccchHHH-HHHHHHHHcCCCchHHHHHh
Confidence 21111000 011112222222211111111 11112222111 1111111111 11111112344444445444
Q ss_pred HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHH--------
Q 003273 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH---GLGDKAHWAFDQM-------- 554 (834)
Q Consensus 486 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m-------- 554 (834)
.+..--.. ..+.-+++|. +.+...|.+...+..........+...+ ....+..++....
T Consensus 366 ~l~npt~r-----~s~~~V~a~~-----~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~ 435 (1088)
T KOG4318|consen 366 QLLNPTLR-----DSGQNVDAFG-----ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQ 435 (1088)
T ss_pred hhcCCccc-----cCcchHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHH
Confidence 44321111 1111111111 2334455555433322111111222211 1111111111111
Q ss_pred ----HH----cCCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 003273 555 ----RK----EGLAP-------DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619 (834)
Q Consensus 555 ----~~----~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 619 (834)
.. .-..| -...-+.++..|.+.-+..+++..-+... .+-+ | ..|..|++.+.....+++|.
T Consensus 436 lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al 511 (1088)
T KOG4318|consen 436 LVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYAL 511 (1088)
T ss_pred HhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHH
Confidence 00 00111 01123345555555555555554443332 2122 2 56899999999999999999
Q ss_pred HHHHhCCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 620 ELIEGMPM-----EPTPIIWVALLNGCRIHANVELGELAANRLLEL---ESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 620 ~~~~~~~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
.+.++... .-|..-+..+.....+++....+..+.+...+. .|.-..+..-+.+-.+..|+.+..++.++.+
T Consensus 512 ~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 512 SFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 99998842 134445677777788888888888887776653 3333455666777788899999999999999
Q ss_pred HhcCCccCCceeE
Q 003273 692 KHTGVKKRPGCSW 704 (834)
Q Consensus 692 ~~~~~~~~~~~s~ 704 (834)
...|+.. .|--|
T Consensus 592 vslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 592 VSLGLSE-TGPLW 603 (1088)
T ss_pred HHhhhhh-cccce
Confidence 9888765 34444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-11 Score=118.69 Aligned_cols=454 Identities=12% Similarity=0.055 Sum_probs=273.2
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC--CC------Chh
Q 003273 210 IVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK--VK------DVV 281 (834)
Q Consensus 210 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~------d~~ 281 (834)
|..-|..+....+|+..|+-+.+. ..-|+.-.+-.-+. ++.. +...+.+|++.+.... .| -+.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnig------ni~~--kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIG------NIHF--KKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeec------ceee--ehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 445555666677777777777665 55555433221111 1111 3445566666654332 12 123
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHH--------
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL-------- 353 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-------- 353 (834)
..+.+.-.+.+.|++++|+.-|+...+. .||..+--.|+-++..-|+.++..+.|.+|..-...||..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4556666788899999999999987776 467766666666777788999999999999875444444322
Q ss_pred HHHHHhhhhhchhhh--------hhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc
Q 003273 354 VSLLSGCASVGALLL--------GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425 (834)
Q Consensus 354 ~~ll~a~~~~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 425 (834)
..++.--.+...+.. ++...-...+. ..+-..|+.... .+-..+.++.-.-...-..
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ki---iapvi~~~fa~g------------~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKI---IAPVIAPDFAAG------------CDWCLESLKASQHAELAID 420 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHH---hccccccchhcc------------cHHHHHHHHHhhhhhhhhh
Confidence 112211111111100 01100000000 000111111000 0111111111000000000
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHH
Q 003273 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505 (834)
Q Consensus 426 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 505 (834)
.--.-...|.++|+++.|+++++-..+++.....-..+-.++|.-.-...++..|.++-+..+...- -++.....-.+
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn 498 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGN 498 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCc
Confidence 0011234578999999999999887663222222222223333333334466667766665543221 22322222233
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003273 506 MYSRSGDIDTARVVFDNLKQRNVVSWTSLM---TGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 582 (834)
.-...|++++|.+.|++....|...-.+|. -.+...|+.++|++.|-++..- +..+......+.+.|....+..+|
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 344579999999999999977766544443 3567889999999999988762 334577788888899999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 583 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
++++-.... -++-|+...+.|.++|-+.|+-..|.+..-.. ..- -+..+..-|...|....-.|.++..++++--+
T Consensus 578 ie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 578 IELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 999877652 45557889999999999999999999875443 322 34445444666666667789999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 661 ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 661 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+-+.--..++.++.+.|++..|..+++.+..+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9976655566777888999999999999888653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-10 Score=112.35 Aligned_cols=359 Identities=11% Similarity=0.062 Sum_probs=239.3
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChh-
Q 003273 203 DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVV- 281 (834)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~- 281 (834)
|..-+-.....+.+.|....|+..|...... .| ..|.+-+..+. -..+.+.+..+....+..+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~---~P--~~W~AWleL~~---------lit~~e~~~~l~~~l~~~~h~M 228 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR---YP--WFWSAWLELSE---------LITDIEILSILVVGLPSDMHWM 228 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc---CC--cchHHHHHHHH---------hhchHHHHHHHHhcCcccchHH
Confidence 5555555555667778888888888877632 22 22333332222 112333333333233222222
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHh
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL--EPNVVTLVSLLSG 359 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a 359 (834)
.=-.+..+|-...+.++++.-.+.....|..-+...-+....+.-...++++|+.+|+++.+... --|..||+.++-.
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 12234456666678888888888888887764443334444555677899999999999998742 2366788887765
Q ss_pred hhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcC
Q 003273 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNG 438 (834)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g 438 (834)
-.....+ ..+.+-+-. -.+--+.++..+.+.|+-.++.++|...|++..+.+| ....|+.|..-|....
T Consensus 309 ~~~~skL----s~LA~~v~~------idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 309 KNDKSKL----SYLAQNVSN------IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HhhhHHH----HHHHHHHHH------hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc
Confidence 3332221 111111111 2223345677888899999999999999999887776 5678999999999999
Q ss_pred ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHH
Q 003273 439 GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARV 518 (834)
Q Consensus 439 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (834)
+...|++-++..++ +.| .|-..|-.|..+|.-.+...-|+-
T Consensus 379 Nt~AAi~sYRrAvd----i~p-----------------------------------~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 379 NTHAAIESYRRAVD----INP-----------------------------------RDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred ccHHHHHHHHHHHh----cCc-----------------------------------hhHHHHhhhhHHHHHhcchHHHHH
Confidence 99999999999987 555 555666777888888888888888
Q ss_pred HHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--
Q 003273 519 VFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF-- 593 (834)
Q Consensus 519 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-- 593 (834)
.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|.++|++-.+..
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 888776 3477888888888888888888888888888754 3356778888888888888888888888766532
Q ss_pred -C-CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 594 -G-ISA-RAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 594 -~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
| +.| ......-|..-+.+.+++++|.......
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 2 223 2233333556667777877777655443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-12 Score=131.47 Aligned_cols=275 Identities=16% Similarity=0.077 Sum_probs=215.3
Q ss_pred ChHHHHHHHHhcCCCCCCcc-chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC----CcccHHHHHHHHhhhhhHHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVA-TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP----NAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p----~~~t~~~ll~a~~~~~~~~~a 480 (834)
+..+|...|..++...+|+. ....+..+|...+++++|.++|+...+ ..| +...|+++|--.-+. .+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~----~~p~rv~~meiyST~LWHLq~~----v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRR----IEPYRVKGMEIYSTTLWHLQDE----VA 405 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccccccchhHHHHHHHHHHhh----HH
Confidence 46788889988776556654 234567889999999999999999977 444 334565555332211 11
Q ss_pred HHHHH-HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 481 RQIHA-YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR---NVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 481 ~~~~~-~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
...+. .+++. .+..|..|.++.++|.-.++.+.|.+.|++..+- ...+|+-+..-+.....+|.|...|+..+.
T Consensus 406 Ls~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 11111 12221 2278999999999999999999999999999843 456888888888899999999999999887
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHH
Q 003273 557 EGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPI 632 (834)
Q Consensus 557 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~ 632 (834)
+.|. -..|..+...|.+.++++.|.-.|+.+. .+.|. .....+++..+.+.|+.|+|+++++++ ..+ .|+.
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 6775 5678888999999999999999999886 67775 566778889999999999999999998 222 3444
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.----...+...++.++|...+|++.++-|+++.+|.+++.+|-+.|+.+.|..-|..+.+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444455566777889999999999999999999999999999999999999999998887643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-09 Score=112.59 Aligned_cols=473 Identities=11% Similarity=0.026 Sum_probs=282.5
Q ss_pred HHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHh--cCCCCCCCcchHHHHHHHHHhCC
Q 003273 141 VLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDE--MFQPGICDIVSWNTIVAAYAQSG 218 (834)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~~li~~~~~~g 218 (834)
+++-+........|.-+-+.+...+.+|+. ---+.++|.-.|+++.|..+... +..+ |..+.......+.+..
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le~~---d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLEKR---DIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHH
Confidence 333333344455555555555555434433 33466777777788877776653 4555 8888888888888888
Q ss_pred ChhHHHHHHHHhhhC-CCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCC--hhHHHHHHHHHHcCCC
Q 003273 219 DAEGGLMLFARMTGD-VKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKD--VVSWNAMVTGYSRIGS 295 (834)
Q Consensus 219 ~~~~A~~~~~~m~~~-~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d--~~~~~~li~~~~~~g~ 295 (834)
++++|+.++.+-... .++.-+..+- ++.. .. +.+. .+...+ ...+-.-...|....+
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~-----~~~l--~~---------n~~~----~~~~~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDA-----ANTL--EL---------NSAG----EDLMINLESSICYLRGKVYVALDN 156 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhh-----hcee--cc---------Cccc----ccccccchhceeeeeeehhhhhcc
Confidence 999998888733111 0111111110 0000 00 0000 000000 0011111123444455
Q ss_pred HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc-CChhHHHHHHHHHHHC-CCCCCHhHHHHHHHhhh-hhchhhhhhHH
Q 003273 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR-GHGHEALDVFRQMQFC-GLEPNVVTLVSLLSGCA-SVGALLLGKET 372 (834)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~-~~~~~~~a~~~ 372 (834)
.++|...|.+.... |+..+.++...-... =...+-.++|...--. -..-+......+..... +..+.+.....
T Consensus 157 ~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~ 232 (611)
T KOG1173|consen 157 REEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRN 232 (611)
T ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccC
Confidence 66666666666554 443333332211110 0011122222211000 00111112222211110 00000000000
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhc
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMF 451 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 451 (834)
-+.- -. +...+..+.....+-+...+++.+..++++.+.+..| ....+-.-|.++...|+..+-..+=.++.
T Consensus 233 ~~~s-l~------~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV 305 (611)
T KOG1173|consen 233 EDES-LI------GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV 305 (611)
T ss_pred chhh-hh------hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 0000 00 3344555666666677777777777777777664443 44445555666777777766666666665
Q ss_pred ccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---h
Q 003273 452 QQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN---V 528 (834)
Q Consensus 452 ~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~ 528 (834)
+ ..| ..+..|-++.--|.-.|+..+|++.|.+...-| .
T Consensus 306 ~----~yP-----------------------------------~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 306 D----LYP-----------------------------------SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred H----hCC-----------------------------------CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 5 233 445556677777778899999999998877333 4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIV 606 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 606 (834)
..|-.....|+-.|..+.|+..+...-+ .-|. ...+..+.--|...++.+.|.++|.... ++-| |+..++-+.
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elg 421 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELG 421 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhh
Confidence 5899999999999999999999998877 4443 4445556667888999999999998875 6666 456677777
Q ss_pred HHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 607 DLLGRANRLDEAVELIEGMP--------MEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
-+....+.+.+|..+|+... .++ =..+|+.|..+|++.+..++|+..+++++.+.|+++.+|..++-+|..
T Consensus 422 vvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 422 VVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL 501 (611)
T ss_pred heeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 77778889999999887652 111 234688899999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHh
Q 003273 678 AGRWKDVARIRSLMKH 693 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~ 693 (834)
.|+++.|.+.+.+...
T Consensus 502 lgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALA 517 (611)
T ss_pred hcChHHHHHHHHHHHh
Confidence 9999999999988754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=125.51 Aligned_cols=280 Identities=11% Similarity=0.049 Sum_probs=189.2
Q ss_pred CCCchhHHHHHHHHHHcCCCCCccc-HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhCCChhHH
Q 003273 113 LRLPDNAFRLFLQMMRRGWHPDEYT-FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVC--NALMAMYARCDTLSYA 189 (834)
Q Consensus 113 ~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~~~~~g~~~~A 189 (834)
.|++++|.+......+.+ +++.. |.....+..+.|+.+.+...+..+.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998877655432 22222 333334447889999999999999875 4554333 2446788999999999
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc-c------chHhHHHHhhccCCchhhhhc
Q 003273 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG-V------SLVNALSACASLGTWSRGKQC 262 (834)
Q Consensus 190 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~------t~~~~l~a~~~~~~~~~~~~~ 262 (834)
...++++.+..|.+......+...|.+.|++++|++++..+.+. ...++. . ++..++.... ..
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~---------~~ 242 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAM---------AD 242 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH---------Hh
Confidence 99999999888778889999999999999999999999999976 333211 1 1111111111 11
Q ss_pred CcHHHHHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 003273 263 GMMEEAKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFR 339 (834)
Q Consensus 263 g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 339 (834)
...+...++++..+ ..++.....+...+...|+.++|..++++..+.. ||. --.++.+....++++++++..+
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~--~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE--RLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH--HHHHHHhhccCCChHHHHHHHH
Confidence 22333444444443 1245555556666666666666666665555431 111 1112233334455555555555
Q ss_pred HHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 003273 340 QMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAP 419 (834)
Q Consensus 340 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 419 (834)
...+ ..|.|.....++...+.+.+++++|++.|+....
T Consensus 319 ~~lk------------------------------------------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 319 QQIK------------------------------------------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHh------------------------------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5544 5677777888889999999999999999999887
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 420 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 420 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
..|+...+-.+...+.+.|+.++|.+.+++-..
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788888888899999999999999999887653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-11 Score=126.95 Aligned_cols=246 Identities=15% Similarity=0.133 Sum_probs=195.8
Q ss_pred CChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CccchhHHhHHHHHHHhcCCHHH-
Q 003273 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY-EMLIPFVANCLIDMYSRSGDIDT- 515 (834)
Q Consensus 438 g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~k~g~~~~- 515 (834)
-+..+|+.+|..... .+.-+......+-.+|...+++++++.+|+.+.+... ...+..+|.+.+-.+-+.=.+.-
T Consensus 333 y~~~~A~~~~~klp~---h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS---HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHhhHH---hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 456899999999443 2333345566677899999999999999999987532 22466777777665543222222
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 516 ARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 516 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
|..+.+ +.+..+.+|-++.+.|.-+++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|...|+...
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 222222 2245678999999999999999999999999999 8895 8889888888889999999999998765
Q ss_pred CCCChHHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 595 ISARAEHYAC---IVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 595 ~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
..++.||++ ++-.|.|.++++.|+-.|+++ .+.|. .++...+...+.+.|+.++|...+++++-++|.|+-.-.
T Consensus 483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 345566665 566799999999999999988 55564 566677777789999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 670 LLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..+.++...+++++|...+++.++.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999999874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=124.86 Aligned_cols=226 Identities=14% Similarity=0.041 Sum_probs=133.3
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 398 IDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 398 i~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
...+...|+++.|...++++.+..| +......+...|.+.|++++|++++..+.+ .+..++. .+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~~-~~~~l--------- 227 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDEE-HRAML--------- 227 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCHH-HHHHH---------
Confidence 5677778888888888888776666 456677777888888888888888888876 3332211 01000
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
....+..++....+..+.+...++++..+ ..++..+..+...+...|+.++|..++++
T Consensus 228 -------------------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 228 -------------------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred -------------------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00011122222222333444455555544 23555666666666667777777777766
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003273 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPI 632 (834)
Q Consensus 554 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 632 (834)
..+ ..||... .++.+....++.+++.+..+...++ .+-|...+.++..++.+.|++++|.+.|+.. ...|+..
T Consensus 289 ~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 289 GLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 665 3344321 1222333446666666666666542 2334455666667777777777777777665 3456666
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
.+..|...+...|+.++|...+++.+.+
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666677777777777777766654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-08 Score=102.88 Aligned_cols=431 Identities=12% Similarity=0.128 Sum_probs=303.5
Q ss_pred CCCchhHHHHhcccCCCCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcc-cHHHHHHHHccCCCchHHHHH
Q 003273 80 HNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEY-TFPFVLKACGELPSSRCGSSV 157 (834)
Q Consensus 80 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 157 (834)
.+++..|+.+|++...-+. +...|---+..-.++.....|..++++.... -|-.. .+---+-.=-..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5677889999998643322 2377888888888999999999999988763 33322 233333334467899999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 003273 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237 (834)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 237 (834)
|+.-.+ ..|+...|++.|++=.+...++.|+.++++..--. |++.+|--...-=-+.|....|..+|.......|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-- 238 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-- 238 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--
Confidence 998876 47999999999999999999999999999876544 5899999888888999999999999998875422
Q ss_pred CCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC----C-CChhHHHHHHHHHHcCCCHHHHHHH--------HH
Q 003273 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----V-KDVVSWNAMVTGYSRIGSFEDAFAL--------FK 304 (834)
Q Consensus 238 p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~----~-~d~~~~~~li~~~~~~g~~~~A~~l--------~~ 304 (834)
|...-..++.+++.... .+..++.|..+|+-.. . +....|..+...=-+.|+.....+. ++
T Consensus 239 -~d~~~e~lfvaFA~fEe-----~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 239 -DDEEAEILFVAFAEFEE-----RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred -hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 33334444445442111 5667888888775443 2 2245566666555555654433332 44
Q ss_pred HhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------hHHHHHHHhhh---hhchhhhhhHHHH
Q 003273 305 KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV-------VTLVSLLSGCA---SVGALLLGKETHC 374 (834)
Q Consensus 305 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~---~~~~~~~a~~~~~ 374 (834)
.+...++. |-.+|--.+..--..|+.+...++|++.... ++|-. +.|.-+=-+|. ...+.+..++++.
T Consensus 313 ~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55566555 7778888888888899999999999998864 33422 23333333332 4568888899998
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHHH----hCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhh
Q 003273 375 YTIKRVLSVDGSHPDDLMVINALIDMYA----KCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM 450 (834)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 450 (834)
..++ -.|...+++.-+--+|+ ++.++..|++++.......|-.-++-.-|..=.+.++++....+|++.
T Consensus 391 ~~l~-------lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 391 ACLD-------LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHh-------hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8887 45666677766655554 578899999999888866677777777777778888999999999988
Q ss_pred cccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC
Q 003273 451 FQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN 527 (834)
Q Consensus 451 ~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~ 527 (834)
++ ..| |..++.....-=..+|+.+.++.++..++....-.....++.+.|+.=..+|.++.|..+++++.+ +.
T Consensus 464 le----~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 464 LE----FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred Hh----cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 87 555 445555555555567788888888887776543214445666777777777778888877777763 33
Q ss_pred hhHHHHHHH
Q 003273 528 VVSWTSLMT 536 (834)
Q Consensus 528 ~~~~~~li~ 536 (834)
+.+|-++..
T Consensus 540 ~kvWisFA~ 548 (677)
T KOG1915|consen 540 VKVWISFAK 548 (677)
T ss_pred chHHHhHHH
Confidence 445655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-10 Score=121.88 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=90.7
Q ss_pred HhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 181 ARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 181 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
...|+++.|++.+.+..+..+.....+-....++.+.|+++.|.+.+.+..+. .|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~--------------------- 150 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGN--------------------- 150 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCc---------------------
Confidence 35788888888887766553323444455566677778888888888776543 111
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 340 (834)
++..+.-.....+...|+++.|...++.+.+.++. +...+..+...+.+.|++++|.+++..
T Consensus 151 -----------------~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 151 -----------------DNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred -----------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11122333466777889999999999999988766 677888899999999999999999999
Q ss_pred HHHCCCC
Q 003273 341 MQFCGLE 347 (834)
Q Consensus 341 m~~~g~~ 347 (834)
+.+.++.
T Consensus 213 l~k~~~~ 219 (409)
T TIGR00540 213 MAKAGLF 219 (409)
T ss_pred HHHcCCC
Confidence 9988754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-10 Score=120.52 Aligned_cols=231 Identities=11% Similarity=-0.017 Sum_probs=118.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
.......+...|+++.|...++.+.+..| +...+..+...|.+.|++++|.+++....+ .++.+.. .+..+-
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k--~~~~~~~-~~~~l~---- 228 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK--AGLFDDE-EFADLE---- 228 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCHH-HHHHHH----
Confidence 33446677778888888888888876666 455677778888888888888888888876 4322211 110000
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 549 (834)
...+..+++.-......+.....++..++ .+...+..+...+...|+.++|.+
T Consensus 229 ------------------------~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 229 ------------------------QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred ------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 00011111111111223333344444432 366777777777888888888888
Q ss_pred HHHHHHHcCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh--
Q 003273 550 AFDQMRKEGLAPDGVTF---LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG-- 624 (834)
Q Consensus 550 l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 624 (834)
++++..+ ..||.... ..........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+.
T Consensus 285 ~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 8888777 34554321 1111112223455555555555443222222113333444444445555555554442
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 625 M-PMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 625 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
. ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 22344444444444444444444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-12 Score=131.68 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcC-CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQEN-VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
...+.+.|++++|++++++..... ..-|...|..+.......+++++|++.++++.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~ 71 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL 71 (280)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344445555555555553332221 11133333333333444444444444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-07 Score=93.12 Aligned_cols=529 Identities=13% Similarity=0.128 Sum_probs=268.2
Q ss_pred chhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHc-CCCCCcccHHHHHHHHccCCCchHHHHHHHHH
Q 003273 83 PSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-GWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (834)
++.+..+..+|| ..|-.-+..+..+|+...-...|.+.+.. -+.-....|...++-....+-++.+..++++-
T Consensus 91 ~er~lv~mHkmp------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 91 FERCLVFMHKMP------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHhcCC------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 344555555565 67877788888888888888888776553 23334456777777777777788888888887
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCC
Q 003273 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG-------ICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDV 234 (834)
Q Consensus 162 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 234 (834)
++. ++..-+-.|..+++.+++++|.+.+....... ..+-..|+.+-...+++-+.-..+.
T Consensus 165 Lk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln--------- 231 (835)
T KOG2047|consen 165 LKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN--------- 231 (835)
T ss_pred Hhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC---------
Confidence 763 33446777888888999999988888876542 1233445544444443332111111
Q ss_pred CCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC--CC--hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcC
Q 003273 235 KVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV--KD--VVSWNAMVTGYSRIGSFEDAFALFKKMRQEN 310 (834)
Q Consensus 235 ~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 310 (834)
+.. ++..+.. +| -..|++|.+.|.+.|.++.|.++|++....
T Consensus 232 --------vda-------------------------iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 232 --------VDA-------------------------IIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred --------HHH-------------------------HHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 111 1111111 22 357999999999999999999999887654
Q ss_pred CCCCeeeHHHHHHHHHhcCCh----------------------hHHHHHHHHHHHCCC-C---------C-CHhHHHHHH
Q 003273 311 VKLNVVTWSAVIAGYAQRGHG----------------------HEALDVFRQMQFCGL-E---------P-NVVTLVSLL 357 (834)
Q Consensus 311 ~~p~~~~~~~li~~~~~~g~~----------------------~~A~~l~~~m~~~g~-~---------p-d~~t~~~ll 357 (834)
..++.-|..+-++|++-... +-.+.-|+.+...+. - | +..++..-.
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV 356 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV 356 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh
Confidence 11444455555555432211 112222332222110 0 0 011111111
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-CCc----cchHHHHH
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-RDV----ATWTVMIG 432 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~----~~~~~li~ 432 (834)
. ...|+..+....+..+++..-. ......-...|..+.+.|-..|+++.|+.+|++....+ +.+ ..|-.-..
T Consensus 357 ~--l~e~~~~~~i~tyteAv~~vdP-~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 357 K--LYEGNAAEQINTYTEAVKTVDP-KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred h--hhcCChHHHHHHHHHHHHccCc-ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 0 1123344445556666664211 00111223467888999999999999999999877332 221 23444444
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCC
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 512 (834)
.=.+..+++.|+++.+.... .|.... + .+...+..-++ .+| .+..++...++.--.+|-
T Consensus 434 mElrh~~~~~Al~lm~~A~~-----vP~~~~----~-~~yd~~~pvQ~-rlh----------rSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATH-----VPTNPE----L-EYYDNSEPVQA-RLH----------RSLKIWSMYADLEESLGT 492 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhc-----CCCchh----h-hhhcCCCcHHH-HHH----------HhHHHHHHHHHHHHHhcc
Confidence 45567788888888887754 222111 0 00000000000 001 233344444555555555
Q ss_pred HHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH---hcCCHHHHHHH
Q 003273 513 IDTARVVFDNLKQRNVVSWTSLM---TGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS---HSGMVDQGLKY 585 (834)
Q Consensus 513 ~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~---~~g~~~~a~~~ 585 (834)
++....+++++.+--+.|=..++ .-+-.+.-++++.+.|++-+..=-.|+ ...|+..|.-+. ..-.++.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 56666666655421111111111 112234445555555555444322233 223333333322 12345666666
Q ss_pred HHHhHHhcCCCCChH--HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 586 FDSMSKEFGISARAE--HYACIVDLLGRANRLDEAVELIEGMP--MEPT--PIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|++..+ +.+|... .|-....+=.+-|....|++++++.. .++. ...|+..|.--...=-+.....+|+++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 666553 4444321 12222222223455556666666552 1121 22455554432222113344556666666
Q ss_pred cCCCCCc--hHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 660 LESEKDG--SYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 660 ~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
.-|++.. ...-.+++=.+.|..+.|+.++..-
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 6554322 2233455555666666666666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-08 Score=103.66 Aligned_cols=136 Identities=19% Similarity=0.136 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCR 642 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 642 (834)
|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|... ...|+ +.+..++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444556677777777776666664 3333 3456666677888888888888888766 45565 557788888888
Q ss_pred hcCcHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEE
Q 003273 643 IHANVELGEL--AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705 (834)
Q Consensus 643 ~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 705 (834)
..|+...|.. +...+++++|.++.+|..|+.++.+.|+.++|.+-|....+.. ...|--+|.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe-~S~PV~pFs 793 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE-ESNPVLPFS 793 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc-cCCCccccc
Confidence 8898888888 8999999999999999999999999999999999998887643 234544453
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=104.06 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=139.3
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccc-hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVAT-WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAAL 477 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~ 477 (834)
..+.-+|+.-.|..-|+......|.... |--+...|....+.++....|....+ +.|
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~----ldp------------------ 391 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED----LDP------------------ 391 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh----cCC------------------
Confidence 3455567777777777777755554443 66677778888888888888877755 555
Q ss_pred HHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003273 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--R-NVVSWTSLMTGYGMHGLGDKAHWAFDQM 554 (834)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 554 (834)
.++.+|..-..++.-.+++++|..=|++... | ++..|-.+..+.-+.+++++++..|++.
T Consensus 392 -----------------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 392 -----------------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred -----------------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666777777777776663 2 3445555555555666777777777777
Q ss_pred HHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 555 RKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR---------AEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 555 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
++. -|+ +..|+.....+...+++++|.+.|+..+ .+.|+ +-+--+++-+- -.+++..|.+++++
T Consensus 455 kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 455 KKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---ELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRK 528 (606)
T ss_pred HHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHH
Confidence 763 454 6667777777777777777777777665 23333 11111122111 23677777777777
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 625 M-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 625 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
. ...|- ...+-+|...-.+.|+.++|++.|++...+
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6 34443 446777777777778888888887776665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-08 Score=94.99 Aligned_cols=417 Identities=11% Similarity=0.078 Sum_probs=216.1
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCc
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTW 256 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~ 256 (834)
...|.+.|++++|..++..+.+..-++...|-.|...+.-.|.+.+|..+-....+. ..-.-++-..+.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-------pL~~RLlfhlah---- 132 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-------PLCIRLLFHLAH---- 132 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHH----
Confidence 344555666666666666655554445555555555555556666665554433221 111122221111
Q ss_pred hhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHH-HHHHhcCChhHHH
Q 003273 257 SRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVI-AGYAQRGHGHEAL 335 (834)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~ 335 (834)
+.++-++-..+.+.+. ....---+|.++....-.+++|++++.+....+ |+-...|.-+ -+|.+..-++-+.
T Consensus 133 ----klndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 133 ----KLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred ----HhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHH
Confidence 3333333333222222 112223344444444456788888888877652 3344444433 4566777777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHhhhhhc--hhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhC-----CChH
Q 003273 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVG--ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC-----KSVD 408 (834)
Q Consensus 336 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-----g~~~ 408 (834)
++++--++. .||. |+..=+.+|..-. .-..+.+-...+... +... -..+.-.++. ..-+
T Consensus 206 evl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN------~~~~-----~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 206 EVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADN------IDQE-----YPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhc------cccc-----chhHHHHHHcCeEEEeCCc
Confidence 777666543 2443 3333333333211 111111111111111 1100 0112222222 2335
Q ss_pred HHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVL 488 (834)
Q Consensus 409 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 488 (834)
.|.+++-.+. ..=+..--.++--|.+.++..+|..+.++.. ...|-......+..+.
T Consensus 272 gALqVLP~L~--~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aa----------------- 328 (557)
T KOG3785|consen 272 GALQVLPSLM--KHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAA----------------- 328 (557)
T ss_pred cHHHhchHHH--hhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHH-----------------
Confidence 5666554443 1112223345556888899999988877662 2444333322222211
Q ss_pred HhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 003273 489 RNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563 (834)
Q Consensus 489 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 563 (834)
+..-......+.-|...|+-.- + .++.--.+|.+.+.-..++++.+..++....- +..|.
T Consensus 329 --------------lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD 393 (557)
T KOG3785|consen 329 --------------LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDD 393 (557)
T ss_pred --------------hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcc
Confidence 1111111122333444443322 1 12223444555555566677777777777664 23333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CChHHH-HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS-ARAEHY-ACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN-G 640 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~-~ 640 (834)
.--..+..|.+..|.+.+|.++|-.+. +.+ .+..+| ..|..+|.+.|..+-|++++-++....+..+.-.++. -
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIAND 470 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 333456778888899999999887664 322 233444 4456788999999999999988865555555555554 4
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 641 CRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
|.+.+.+=-|-+++..+-.++|. +..
T Consensus 471 CYk~~eFyyaaKAFd~lE~lDP~-pEn 496 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEILDPT-PEN 496 (557)
T ss_pred HHHHHHHHHHHHhhhHHHccCCC-ccc
Confidence 99999888888999999888884 443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=109.35 Aligned_cols=197 Identities=15% Similarity=0.122 Sum_probs=164.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.....+..+...|.+.|++++|...|++.. . .+...|..+...+...|++++|.+.+++..+. .|+ ...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 345667788899999999999999999876 2 34668888889999999999999999999984 454 66778888
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVE 648 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 648 (834)
..+...|++++|.++++...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8999999999999999998753222334567788899999999999999999887 2233 4567888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999888888889999999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-09 Score=100.81 Aligned_cols=301 Identities=17% Similarity=0.182 Sum_probs=171.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChH
Q 003273 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408 (834)
Q Consensus 329 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 408 (834)
.++++|.++|-+|.+... -+..+-.++-+-|-+.|..+.|..+|....++- +-....-..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhhhhh
Confidence 344555555555544110 011122233334444455555555555544430 0011112234456777788888889
Q ss_pred HHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 487 (834)
.|+.+|..+...+ .-......|+..|-+..++++|++.-++..+ +.++...+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k----~~~q~~~~----------------------- 177 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK----LGGQTYRV----------------------- 177 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----cCCccchh-----------------------
Confidence 9999888887321 2344566777888888888888888777765 22322221
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-- 562 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-- 562 (834)
.-...|.-|...+....+.+.|..++.+..+ |+ +..--.+...+...|+++.|.+.++...+. .|+
T Consensus 178 -------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl 248 (389)
T COG2956 178 -------EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYL 248 (389)
T ss_pred -------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHH
Confidence 2223344555556666777778888877763 22 223333455677788888888888888884 455
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVALLNGC 641 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~ 641 (834)
+.+...|..+|.+.|+.+++...+..+.+. .++.+.-..|.+......-.++|...+ +...-+|+...+..|+...
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 566777778888888888888888877642 334444444444444343444444433 3344456655555554432
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCcee
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCS 703 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 703 (834)
... ++.|++.+.....+.|....++..|.+.
T Consensus 326 l~d-------------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 326 LAD-------------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred hcc-------------------------------ccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 211 1335577777777778776666666543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-09 Score=116.70 Aligned_cols=249 Identities=16% Similarity=0.190 Sum_probs=164.7
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC--------CCCccc-hHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK--------NRDVAT-WTVMIGSYSQNGGANDALALFPQMFQQDKL 456 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--------~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~g 456 (834)
+.|.-..+...|..+|...|+++.|..+|+...+. .+.+.+ .+.+...|...+++++|..+|++++.....
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34445566777899999999999999998876532 122222 233556677778888888888777651000
Q ss_pred CcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-ccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 003273 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYE-MLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLM 535 (834)
Q Consensus 457 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li 535 (834)
+ .|-. |.-..+++.|...|.+.|++++|...++
T Consensus 274 ~--------------------------------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e-------------- 307 (508)
T KOG1840|consen 274 V--------------------------------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE-------------- 307 (508)
T ss_pred h--------------------------------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH--------------
Confidence 0 0110 0223344556667888888888877664
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHH
Q 003273 536 TGYGMHGLGDKAHWAFDQMRKEGLA-PD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG--ISAR----AEHYACIVD 607 (834)
Q Consensus 536 ~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~l~~ 607 (834)
.|++++++ ..|.. |. ..-++.+...|...+.+++|..++....+.+. ..++ ..+++.|..
T Consensus 308 ----------~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 308 ----------RALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred ----------HHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 34444444 22222 23 23355666677788888888887776654433 2222 457888888
Q ss_pred HHhhcCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCC---CCchHHH
Q 003273 608 LLGRANRLDEAVELIEGMP-------M--EPT-PIIWVALLNGCRIHANVELGELAANRLLEL----ESE---KDGSYTL 670 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~-------~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~ 670 (834)
+|...|+++||+++++++- . .+. ...++.|...|.+.++.+.|.+.|+....+ .|+ ...+|..
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 9999999999988888761 1 122 346677888888888888888888876654 344 4468899
Q ss_pred HHHHHHhcCCchhHHHHHHHHH
Q 003273 671 LSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
|+-+|...|++++|.++.....
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999988775
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-08 Score=100.67 Aligned_cols=451 Identities=13% Similarity=0.070 Sum_probs=235.6
Q ss_pred HHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC
Q 003273 175 ALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254 (834)
Q Consensus 175 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~ 254 (834)
+=++.+.+.|++++|.+..+.+...++.|......-+-++.+.+++++|+.+.+.-. +..-+.+-+ +=.+|+.-
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~--fEKAYc~Y- 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFF--FEKAYCEY- 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhh--HHHHHHHH-
Confidence 345667778888888888888887775577778888888888888888886554432 111111110 12222210
Q ss_pred CchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHH
Q 003273 255 TWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334 (834)
Q Consensus 255 ~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 334 (834)
+.+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+. +...+...+.+-+..-- .+
T Consensus 91 ------rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn----~~dd~d~~~r~nl~a~~--a~ 158 (652)
T KOG2376|consen 91 ------RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN----NSDDQDEERRANLLAVA--AA 158 (652)
T ss_pred ------HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHH--Hh
Confidence 5566677776666444444445555556666777777777777777665 33333333322111000 00
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHh---hhhhchhhhhhHHHHHHHHHhh----hcCCCCCChhhHHHHHHHHHHhCCCh
Q 003273 335 LDVFRQMQFCGLEPNVVTLVSLLSG---CASVGALLLGKETHCYTIKRVL----SVDGSHPDDLMVINALIDMYAKCKSV 407 (834)
Q Consensus 335 ~~l~~~m~~~g~~pd~~t~~~ll~a---~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~y~~~g~~ 407 (834)
... ..|......| ..||..+.+. +...|++..|++++..+.+... ..+.+ ..+...--..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~el~~---------- 225 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEEELNP---------- 225 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHHHHHH----------
Confidence 000 1222223333 2344444332 2344566666666655533211 00000 0000000000
Q ss_pred HHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCccc---HHHHHHHHhhhhhHH------
Q 003273 408 DVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT---LSCALMACARLAALR------ 478 (834)
Q Consensus 408 ~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t---~~~ll~a~~~~~~~~------ 478 (834)
.--.|.-.+...|+.++|.+++...++. -.+|... +..=|.+.....++-
T Consensus 226 ------------------IrvQlayVlQ~~Gqt~ea~~iy~~~i~~---~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 226 ------------------IRVQLAYVLQLQGQTAEASSIYVDIIKR---NPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred ------------------HHHHHHHHHHHhcchHHHHHHHHHHHHh---cCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 0111223334455555555555555441 1222211 111111111111100
Q ss_pred --------HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHH-HH-HcCChHHH
Q 003273 479 --------FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN-VVSWTSLMTG-YG-MHGLGDKA 547 (834)
Q Consensus 479 --------~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~~~~li~~-~~-~~g~~~~A 547 (834)
.+......+.+... .....-+.++.+|. +..+.+.++-...+... ...+.+++.. +. +...+.+|
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk--~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQK--QAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKA 360 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhh
Confidence 00111111111110 12223356666665 44566666666666322 2334444433 32 22347788
Q ss_pred HHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--------HhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 548 HWAFDQMRKEGLAPDG--VTFLVLLYACSHSGMVDQGLKYFD--------SMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
.+++...-+. .|.. +.....+......|+++.|.+++. .+.+ .+.. +.+...++.+|.+.+.-+-
T Consensus 361 ~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 361 IELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCcc
Confidence 8888877663 4543 444555556788999999999998 4432 2333 4456778889998887665
Q ss_pred HHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 618 AVELIEGM--------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 618 A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
|.+++.+. ..++. ..+|.-+...-.++|+.++|...++++++..|+|......++-+|+... .+.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 55555443 22222 2345555555577899999999999999999999999999999998764 3444444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-09 Score=100.95 Aligned_cols=293 Identities=15% Similarity=0.126 Sum_probs=193.7
Q ss_pred CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhCCChhHH
Q 003273 113 LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG-FDS--NVFVCNALMAMYARCDTLSYA 189 (834)
Q Consensus 113 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~~~~~g~~~~A 189 (834)
+.++++|.++|-+|.+.. +.+..+-.+|-+.+-+.|..+.|..+|+.+.++. +.- ...+.-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 577899999999998732 2223344566677888899999999999888753 111 134556778889999999999
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHH
Q 003273 190 RQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAK 269 (834)
Q Consensus 190 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~ 269 (834)
+.+|..+.+.+.--..+...|+..|-+..++++|+++-+++.+. +-++..+ -|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~----eIA--------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRV----EIA--------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchh----HHH---------------------
Confidence 99999988763324456778899999999999999999988865 3332221 111
Q ss_pred HHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003273 270 KVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349 (834)
Q Consensus 270 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 349 (834)
..|.-|...+....+++.|..++.+..+.+.+ .+..--.+...+...|+++.|++.++...+.+..--
T Consensus 181 -----------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 181 -----------QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred -----------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 12334444455556677777777777666444 444444555667777777777777777776654444
Q ss_pred HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHH
Q 003273 350 VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTV 429 (834)
Q Consensus 350 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~ 429 (834)
..+...+..+|...|+.+.+...+..+... .+...+-..+.+.-....-.+.|.....+-..+.|+...+..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 445566666666777776666666665544 223333444444444455566676666665555788888888
Q ss_pred HHHHHHh---cCChhHHHHHHHhhcc
Q 003273 430 MIGSYSQ---NGGANDALALFPQMFQ 452 (834)
Q Consensus 430 li~~~~~---~g~~~~A~~l~~~m~~ 452 (834)
+|..-.. .|...+.+.+++.|..
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHHH
Confidence 8776543 3556677777777765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.5e-07 Score=95.12 Aligned_cols=469 Identities=13% Similarity=0.109 Sum_probs=236.3
Q ss_pred HccCCCchHHHHHHHHHHH-------hCCC-CchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHh
Q 003273 145 CGELPSSRCGSSVHAVICS-------SGFD-SNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ 216 (834)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~-------~g~~-~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 216 (834)
++..|++..++.+|+...- .|-+ .+-+--.+++.++.+ ++.+|+.+|-+-.. -..-|..|..
T Consensus 500 faai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn~--------te~aigmy~~ 569 (1636)
T KOG3616|consen 500 FAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQNA--------TEEAIGMYQE 569 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhccc--------HHHHHHHHHH
Confidence 3444556666666654331 1211 222233445544443 57777777754221 1234566667
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCH
Q 003273 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF 296 (834)
Q Consensus 217 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~ 296 (834)
..++++|+.+-+.. |.+.-...-.+.+.++. ..|+-++|-++ .+.|- ---+-|+.|.+.|.+
T Consensus 570 lhkwde~i~lae~~----~~p~~eklk~sy~q~l~---------dt~qd~ka~el----k~sdg-d~laaiqlyika~~p 631 (1636)
T KOG3616|consen 570 LHKWDEAIALAEAK----GHPALEKLKRSYLQALM---------DTGQDEKAAEL----KESDG-DGLAAIQLYIKAGKP 631 (1636)
T ss_pred HHhHHHHHHHHHhc----CChHHHHHHHHHHHHHH---------hcCchhhhhhh----ccccC-ccHHHHHHHHHcCCc
Confidence 77778877765433 21111111122233333 22333333222 11111 123456778888877
Q ss_pred HHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHH
Q 003273 297 EDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376 (834)
Q Consensus 297 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 376 (834)
-.|.+.-..-.. +..|......+..++.+..-+++|-++|+++.. +...+.++-+-..+..+.++-..
T Consensus 632 ~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarf- 699 (1636)
T KOG3616|consen 632 AKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARF- 699 (1636)
T ss_pred hHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHh-
Confidence 776655321111 112555555555666666666666666666643 11222222222223333332221
Q ss_pred HHHhhhcCCCCCChhhHH-HHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCC
Q 003273 377 IKRVLSVDGSHPDDLMVI-NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455 (834)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 455 (834)
.+|..+... .+-.+-+...|+++.|..-|-+.. ..-.-|.+-....++.+|+.+++.++. .
T Consensus 700 ---------afp~evv~lee~wg~hl~~~~q~daainhfiea~-------~~~kaieaai~akew~kai~ildniqd--q 761 (1636)
T KOG3616|consen 700 ---------AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------CLIKAIEAAIGAKEWKKAISILDNIQD--Q 761 (1636)
T ss_pred ---------hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-------hHHHHHHHHhhhhhhhhhHhHHHHhhh--h
Confidence 111111111 122233344455555555554432 001123344455666677776666654 1
Q ss_pred CCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHH
Q 003273 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQR--NVVSWTS 533 (834)
Q Consensus 456 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~ 533 (834)
+.-..-|.-+..-|+..|+++.|.+++. ....++--|+||.+.|++++|.++-.+...| .+.+|-+
T Consensus 762 --k~~s~yy~~iadhyan~~dfe~ae~lf~----------e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 762 --KTASGYYGEIADHYANKGDFEIAEELFT----------EADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred --ccccccchHHHHHhccchhHHHHHHHHH----------hcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 1222334455566666677777666663 2233455667777777777777766665543 2334444
Q ss_pred HHHHHHHcCChHHHHHHHHH-------------------HHHc--CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 534 LMTGYGMHGLGDKAHWAFDQ-------------------MRKE--GLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~-------------------m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
-..-+-.+|++.+|.++|-. |++. ...|+ ..|...+..-+...|++..|...|-+..
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 33444445554444443311 1110 13344 4455666666777788888877775553
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHH------HHhcCcHHHHHHH------H
Q 003273 591 KEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPME----PTPIIWVALLNG------CRIHANVELGELA------A 654 (834)
Q Consensus 591 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~ll~~------~~~~g~~~~a~~~------~ 654 (834)
-|.+-+++|-..+.+++|..+-+.-.-. .-...|..-+++ +-++|-++.|+.. |
T Consensus 910 ----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~af 979 (1636)
T KOG3616|consen 910 ----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAF 979 (1636)
T ss_pred ----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccch
Confidence 2667888999999999999988765311 112344332222 3455555555432 1
Q ss_pred HHHHhc-----CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 655 NRLLEL-----ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 655 ~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+-++++ ...-+..+..++.-+-..|++++|.+-+-...+
T Consensus 980 d~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 980 DFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 222221 233456788888899999999999877665554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-07 Score=98.08 Aligned_cols=260 Identities=14% Similarity=0.065 Sum_probs=160.1
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
++.....-..-+...+++.+.+++++...+... +....+..=|.++...|+...--.+-..+++ ..|....+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-------~yP~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVD-------LYPSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHH-------hCCCCCcc
Confidence 444455555667788899999999988876421 3333444445566666665555444444554 56778888
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC-CcccHHHHHHHH
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP-NAFTLSCALMAC 471 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~a~ 471 (834)
|-++.-.|.-.|+..+|++.|.+....+|. ...|-.....|+-.|..++|+..+...-+ +-| ....+..+---|
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar----l~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR----LMPGCHLPSLYLGMEY 390 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH----hccCCcchHHHHHHHH
Confidence 999999999899999999999987744543 46798999999999999999988877754 222 222233333445
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------CChhHHHHHHHHHHHc
Q 003273 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ----------RNVVSWTSLMTGYGMH 541 (834)
Q Consensus 472 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~ 541 (834)
.+.++++.|.+++..+.... |.+|.+.+-+.-+....+.+.+|...|+.... .-..+|+.|..+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 56667777777766665433 25666666666666666666666666665431 0122344444445555
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003273 542 GLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSM 589 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (834)
+.+++|+..|++.+. ..| |..|+.++.-.+...|+++.|...|.+.
T Consensus 469 ~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred hhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555555555555444 223 2444444444444455555555544443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-08 Score=100.24 Aligned_cols=296 Identities=11% Similarity=0.084 Sum_probs=184.4
Q ss_pred CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhc
Q 003273 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQC 262 (834)
Q Consensus 183 ~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~ 262 (834)
.|++..|+++..+-.+.+...+..|..-+.+--+.|+.+.+-.++.+..+. .+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~------------------------ 149 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AG------------------------ 149 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CC------------------------
Confidence 688888888887755554334455555566666777777777777776543 11
Q ss_pred CcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 263 GMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 263 g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
.++..++-+........|+++.|..-.+++.+.++. +.........+|.+.|++.+...++..|.
T Consensus 150 --------------~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 150 --------------DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred --------------CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 234455666677788889999999999998888777 77888899999999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC
Q 003273 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR 422 (834)
Q Consensus 343 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 422 (834)
+.|+--|+..-. + ...+++.+++-....+..+.-...++..+.+-+
T Consensus 215 ka~~l~~~e~~~-----------------l-----------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr 260 (400)
T COG3071 215 KAGLLSDEEAAR-----------------L-----------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR 260 (400)
T ss_pred HccCCChHHHHH-----------------H-----------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhh
Confidence 988755442110 0 011222233222222333333334444433222
Q ss_pred -CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHh
Q 003273 423 -DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501 (834)
Q Consensus 423 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 501 (834)
++..-.+++.-+.+.|+.++|.++..+..+ .+..|+ ...+-.+.+.++.+.-.+..+.-.+... .++..+.
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk--~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~ 332 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALK--RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP--EDPLLLS 332 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC--CChhHHH
Confidence 344444455555555666666666555555 444444 1222233333443333333333333222 4557777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
+|...|.+.+.+.+|...|+... .|+..+|+-+..++.+.|+..+|.+.+++....-..|+
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888665 57777888888888888888888888877665434443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-11 Score=87.37 Aligned_cols=50 Identities=34% Similarity=0.628 Sum_probs=38.8
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhh
Q 003273 313 LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362 (834)
Q Consensus 313 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 362 (834)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777888888877777753
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-09 Score=121.83 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
++.|...+..+++... .++..+..+..++...|++++|...|++.. .| +...|..+...+...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~ldP--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDH--NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444322 566777888888999999999999999877 34 456788889999999999999999999
Q ss_pred HHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003273 554 MRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT 630 (834)
Q Consensus 554 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 630 (834)
.++ ..|+. ..+..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|.+.++++ +..|+
T Consensus 398 Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999 67763 33344455677789999999999988643 234 4556778889999999999999999887 34455
Q ss_pred H-HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 P-IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
. ..++.+...+...|+ .+...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 345555556677774 788878887775433333344478889999999988887 666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-11 Score=86.04 Aligned_cols=50 Identities=30% Similarity=0.575 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003273 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH 575 (834)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 575 (834)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-08 Score=100.11 Aligned_cols=302 Identities=14% Similarity=0.099 Sum_probs=209.9
Q ss_pred HHHHHHHH--hCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003273 104 NALIRRAV--RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYA 181 (834)
Q Consensus 104 ~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~ 181 (834)
..+..+.. ..|+|.+|..+..+-.+.+-.|- ..|..-..+..+.|+.+.+-.++.++.+..-.++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 33444443 36999999999988776653332 2354555677788999999999999998744677788888899999
Q ss_pred hCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhh
Q 003273 182 RCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQ 261 (834)
Q Consensus 182 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~ 261 (834)
..|+.+.|+.-.+++.+.++.+.........+|.+.|++.+...++..|.+. +.-.|..
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e-------------------- 223 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEE-------------------- 223 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHH--------------------
Confidence 9999999999999888877778999999999999999999999999999987 5433221
Q ss_pred cCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 003273 262 CGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 341 (834)
+.+ -...+|+.+++-....+..+.-...++..+.+ .+-++..-.+++.-+.+.|+.++|.++..+-
T Consensus 224 ------~~~-------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 224 ------AAR-------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred ------HHH-------HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 110 01234444444444444444434444444332 2224444555555666666666666666666
Q ss_pred HHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 003273 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN 421 (834)
Q Consensus 342 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 421 (834)
.+.+..|+..+ +-.+.+.++.+.-.+..+...+ ..+.++..+.+|...|.+.+.+.+|...|+......
T Consensus 290 Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~-------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 290 LKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLK-------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHhccChhHHH----HHhhcCCCCchHHHHHHHHHHH-------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 66555454221 1223334444444444444444 345566788899999999999999999999888778
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 422 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
|+..+|+-+..+|.+.|++.+|.+.+++.+.
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8999999999999999999999988887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=103.24 Aligned_cols=235 Identities=12% Similarity=0.089 Sum_probs=182.1
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
.|.+--+.+..+|.+.|.+.+|.+.|+.-.+..|-+.||-.+-..|.+..+++.|+.+|.+-++ ..|-.+||.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld----~fP~~VT~l--- 293 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD----SFPFDVTYL--- 293 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh----cCCchhhhh---
Confidence 3555557788999999999999999998887778888998899999999999999999998876 667666662
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGD 545 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 545 (834)
..+...+-..++.++|.++|+...+ -++.+...+..+|.-.++++
T Consensus 294 --------------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 294 --------------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred --------------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 2233344455666777777776653 24445555666777788888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
-|+..|+++++.|+. ++..|..+.-+|...+++|-++..|.....- .-.|+
T Consensus 342 ~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~--------------------------- 392 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPG--------------------------- 392 (478)
T ss_pred HHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcc---------------------------
Confidence 888888888888753 4666777777888888888777777665421 11111
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 626 PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 626 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.-..+|..|.......||+..|.+.++.++..+|++..+++.|+-+-.+.|+.++|+.+++..+..
T Consensus 393 ---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 393 ---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ---hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 124578888888888999999999999999999999999999999999999999999999988764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-07 Score=98.95 Aligned_cols=238 Identities=15% Similarity=0.183 Sum_probs=160.5
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHH----------------------------HHhh
Q 003273 422 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM----------------------------ACAR 473 (834)
Q Consensus 422 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~----------------------------a~~~ 473 (834)
.|+...+.-+.++...+-+.+-+++++++.-....+. ....+..++- .+..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fs-e~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS-ENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccc-cchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 3555566677888889999999999998875211111 1111111111 1112
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
.+.+++|..++...- .+....+.|++ .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+
T Consensus 1061 ~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh
Confidence 222333333332211 12222222222 234555555555555443 4699999999999999999887754
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 003273 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPII 633 (834)
Q Consensus 554 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 633 (834)
. -|+..|..++.++++.|.+++-.+++...+++ .-+|.++ +.|+-+|++.+++.|-++++. -||..-
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~ 1196 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVAN 1196 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchh
Confidence 2 35778999999999999999999999877654 6666654 568999999999999888873 377777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
......-|...|.++.|.-.|. +...|..|+..+...|.+..|...-++..
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888999999998887775 34668888999999999988877655543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.7e-06 Score=86.46 Aligned_cols=402 Identities=12% Similarity=0.126 Sum_probs=236.0
Q ss_pred chHHHHHHhhCCCchhHHHHhccc----CC-CCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHH
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRI----SP-SPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKA 144 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~----~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 144 (834)
|-.-+....++|++..-+..|++. |. ... ..|...+.-....+-++-+..+|++.++- .|. .-.--+..
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~--rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~ 178 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHD--RIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhc--cchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence 555566667789999999999874 21 222 56998898888899999999999998763 343 35666777
Q ss_pred HccCCCchHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhCCChhH---HHHHHHhcCCCCCCC--cchHHHHHHH
Q 003273 145 CGELPSSRCGSSVHAVICSSG------FDSNVFVCNALMAMYARCDTLSY---ARQLFDEMFQPGICD--IVSWNTIVAA 213 (834)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~li~~ 213 (834)
++..+++.+|.+.++.++... .+.+-..|+-+-+..++.-+.-. ...++..+..+ .+| ...|++|..-
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r-ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR-FTDQLGFLWCSLADY 257 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc-CcHHHHHHHHHHHHH
Confidence 888999999998888776321 25566678887777776544322 33344444333 123 3469999999
Q ss_pred HHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhh-------------hcCcHHHHHHHHHhcCC---
Q 003273 214 YAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGK-------------QCGMMEEAKKVFERMKV--- 277 (834)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~-------------~~g~~~~A~~~~~~~~~--- 277 (834)
|.+.|.++.|.++|++..+. ..+...|..+..+++......... ..-+++-...-|+.+..
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999887653 223344555555554332211111 11123333334443321
Q ss_pred ------------CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCC------CeeeHHHHHHHHHhcCChhHHHHHHH
Q 003273 278 ------------KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKL------NVVTWSAVIAGYAQRGHGHEALDVFR 339 (834)
Q Consensus 278 ------------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~l~~ 339 (834)
.++..|..-+..| .|+..+-...|.+.... +.| -...|-.+...|-.+|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1344455444433 45667777777776653 333 12357788888889999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHhhh----hhchhhhhhHHHHHHHHHh-----hhcCCCCCChhh------HHHHHHHHHHhC
Q 003273 340 QMQFCGLEPNVVTLVSLLSGCA----SVGALLLGKETHCYTIKRV-----LSVDGSHPDDLM------VINALIDMYAKC 404 (834)
Q Consensus 340 ~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~------~~~~li~~y~~~ 404 (834)
+..+... +...-+..+-..|+ +..+++.|..+.+.+...- ...+++.++... +|..+++.--.+
T Consensus 412 ka~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 412 KATKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HhhcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 8876543 22222333333333 3345555555554443210 112233344333 445556666778
Q ss_pred CChHHHHHHHHhcCCCCCCccchHHHH---HHHHhcCChhHHHHHHHhhcccCCCCcCCcc----cHHHHHHHHhhhhhH
Q 003273 405 KSVDVARVMFDAIAPKNRDVATWTVMI---GSYSQNGGANDALALFPQMFQQDKLVKPNAF----TLSCALMACARLAAL 477 (834)
Q Consensus 405 g~~~~A~~~f~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~----t~~~ll~a~~~~~~~ 477 (834)
|-++....+++++.... +.|=..++ .-+-.+.-++++.+.|++-+. ---.|+.. ||....-.=.....+
T Consensus 491 gtfestk~vYdriidLr--iaTPqii~NyAmfLEeh~yfeesFk~YErgI~--LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLR--IATPQIIINYAMFLEEHKYFEESFKAYERGIS--LFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred ccHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc--cCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 88999999999887322 22221111 112345667889998886654 22233332 232222221222345
Q ss_pred HHHHHHHHHHHH
Q 003273 478 RFGRQIHAYVLR 489 (834)
Q Consensus 478 ~~a~~~~~~~~~ 489 (834)
+.++.+|.+.++
T Consensus 567 EraRdLFEqaL~ 578 (835)
T KOG2047|consen 567 ERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHh
Confidence 666666666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-07 Score=101.23 Aligned_cols=570 Identities=13% Similarity=-0.001 Sum_probs=298.5
Q ss_pred chhHHHHhcccCCCCcc-hhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHH
Q 003273 83 PSPALSLLQRISPSPFS-VFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 83 ~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (834)
...|...|-+-.+-+++ ...|..|...|....+...|...|+...+.+ ..|..........+++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 44555555443333331 2456666666666666666666666665432 223344556666677777777766662221
Q ss_pred HHhC-CCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCc
Q 003273 162 CSSG-FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDG 240 (834)
Q Consensus 162 ~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 240 (834)
.+.. ...-..-|-.+.-.|.+.++..+|..-|+...+..|.|...|..+..+|...|++..|+++|.+.. -+.|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHh
Confidence 1110 001112233344456667777777777777766666677777777777777777777777777665 334432
Q ss_pred cchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC----------CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc-
Q 003273 241 VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV----------KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE- 309 (834)
Q Consensus 241 ~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 309 (834)
+|.-...+.... ..|.+.+|...+..+.. .-..++-.+...+.-.|-...|.+.|++-.+.
T Consensus 630 -~y~~fk~A~~ec-------d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 630 -KYGRFKEAVMEC-------DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred -HHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 222222221100 34555555555544331 11223333333444444444555555443322
Q ss_pred ------CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh---h---hhhHHHHHHH
Q 003273 310 ------NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL---L---LGKETHCYTI 377 (834)
Q Consensus 310 ------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~ 377 (834)
...-+.-.|-.+-. |..+|-... .. .|+......+..-.-..+.. + .|-+.+....
T Consensus 702 ~~~l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 11112223332222 222333222 11 22222222222212222222 1 1111111111
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHHHh----CC----ChHHHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHH
Q 003273 378 KRVLSVDGSHPDDLMVINALIDMYAK----CK----SVDVARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFP 448 (834)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~li~~y~~----~g----~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 448 (834)
.+..+...|..|+.-|.+ +| +...|...+.+..+.. .+...||.|... ...|++.-|.--|-
T Consensus 770 --------sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 770 --------SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred --------HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhh
Confidence 112223444444444333 22 2345677777655333 466778777655 55566666666665
Q ss_pred hhcccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---
Q 003273 449 QMFQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--- 524 (834)
Q Consensus 449 ~m~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--- 524 (834)
+-.. ..| ...+|..+--.|....+++.|.+.+........ .+...+-...-.-...|+.-++..+|..-.
T Consensus 841 ks~~----sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP--~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 841 KSRF----SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP--LNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hhhh----ccccchhheeccceeEEecccHHHhhHHHHhhhhcCc--hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 5543 333 455666666666777788888888877665432 233322222222345677777777776521
Q ss_pred -----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 525 -----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE--------GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 525 -----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
-++...|-.-..-..++|+.++-+...+++-.. +-.|+ ...|...+....+.+.+.+|.+...+.+
T Consensus 915 ~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 915 SKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred ccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 255556655555566777766655444433221 12454 7778888888888888888877776654
Q ss_pred HhcCCCCChHHHH----HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 591 KEFGISARAEHYA----CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 591 ~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.-...+-+...|+ ....++...|.++.|...+...+.+.+..+-.+-+..+ -.++++.+.+.|++++.+-.++..
T Consensus 995 glLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 995 GLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccc
Confidence 2222233444454 33455666788888888877776555655555555543 346788999999998887543332
Q ss_pred ---hHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 667 ---SYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 667 ---~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
....++......+.-+.|....-+..
T Consensus 1074 ~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1074 KVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 33445555566677777776654444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-07 Score=92.49 Aligned_cols=306 Identities=11% Similarity=-0.003 Sum_probs=188.2
Q ss_pred CCHhHHHHHHHhhhh--hchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc
Q 003273 348 PNVVTLVSLLSGCAS--VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA 425 (834)
Q Consensus 348 pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 425 (834)
|...+...-+.+++. .++-..+.+.+..+.+. ..++.++....++.+.|...|+.++|...|++....+|+.+
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~-----~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i 266 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN-----TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV 266 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh-----ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh
Confidence 333344444444332 33333344444443333 15677888888888888888888888888888764444332
Q ss_pred c-hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHH
Q 003273 426 T-WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504 (834)
Q Consensus 426 ~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 504 (834)
+ ...-..-+.+.|+.+....+...+... .+-....+..-+...-...+++.|..+-...++... .+...+-.-.
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG 341 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKG 341 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhcc
Confidence 2 111122345667777777776666541 111111122222222344566666666666655433 3333333334
Q ss_pred HHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHH-hcCCH
Q 003273 505 DMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL-YACS-HSGMV 579 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~ 579 (834)
..+...|+.++|.-.|+... . -+..+|..|+..|...|...+|.-+-+...+. +.-+..+...+. ..|. ....-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 56667788888888887665 3 36778888888888888888888877776663 223355554442 2222 23335
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|..++++.. .+.|+ ....+.+..++.+.|..++++.++++. ...||....+.|....+..+.+++|...|..+
T Consensus 421 EKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 67777777654 55666 345566777788888888888888776 44578888888888888888888888888888
Q ss_pred HhcCCCCCch
Q 003273 658 LELESEKDGS 667 (834)
Q Consensus 658 ~~~~p~~~~~ 667 (834)
+.++|+|..+
T Consensus 498 Lr~dP~~~~s 507 (564)
T KOG1174|consen 498 LRQDPKSKRT 507 (564)
T ss_pred HhcCccchHH
Confidence 8888876543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-09 Score=107.08 Aligned_cols=211 Identities=16% Similarity=0.033 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHhCC-Cc-cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHH
Q 003273 476 ALRFGRQIHAYVLRNQY-EM-LIPFVANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWA 550 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~-~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l 550 (834)
..+.+..-+..++.... .+ .....+..+...|.+.|+.++|...|++.. . .+...|+.+...+...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555654321 11 224567788889999999999999999887 3 4577999999999999999999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-C
Q 003273 551 FDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-P-M 627 (834)
Q Consensus 551 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~ 627 (834)
|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...+++++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 7887 67788888899999999999999998874 4554332222333455678999999999664 2 2
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 628 EPTPIIWVALLNGCRIHANVELGELAANRLL-------ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.|+ .|..- ......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 196 ~~~--~~~~~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKE--QWGWN-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Ccc--ccHHH-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233 33321 222234443333 2333333 5566677899999999999999999999999988654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-06 Score=93.25 Aligned_cols=453 Identities=15% Similarity=0.129 Sum_probs=264.1
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCC
Q 003273 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 219 (834)
..++.| ..+....+....+.+++ +++....+.....-.+...|+-++|......-...++.+-+.|..+.-.+-...+
T Consensus 13 ~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 13 RALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh
Confidence 334433 44556666666666666 3444455555555556677888888888777666655677889999888888889
Q ss_pred hhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHH
Q 003273 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299 (834)
Q Consensus 220 ~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 299 (834)
+++|++.|+.... +.||.. ..|.-+.-.-++.|+++..
T Consensus 91 Y~eaiKcy~nAl~---~~~dN~---------------------------------------qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 91 YDEAIKCYRNALK---IEKDNL---------------------------------------QILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred HHHHHHHHHHHHh---cCCCcH---------------------------------------HHHHHHHHHHHHHHhhhhH
Confidence 9999999988873 344432 2222222222344455544
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHhh------hhhchhhhhhHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLSGC------ASVGALLLGKET 372 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~------~~~~~~~~a~~~ 372 (834)
...-.+..+..+. ....|.....++.-.|++..|..++++..+.. -.|+...|.-...-. ...|.++.+.+.
T Consensus 129 ~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4444444443222 44567777777777777777777777776654 245555554333322 233444444333
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHH-hcCChhHHH-HHHHhh
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS-QNGGANDAL-ALFPQM 450 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~-~l~~~m 450 (834)
...... ........--.-.+.+.+.+++++|..++..+....||.+.|+....... +-.+.-+++ .+|...
T Consensus 208 L~~~e~-------~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 208 LLDNEK-------QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHhhhh-------HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 332222 22223334445567889999999999999999988898888776654443 444444555 566655
Q ss_pred cccC-CCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHH----HHHHHhhcC-
Q 003273 451 FQQD-KLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT----ARVVFDNLK- 524 (834)
Q Consensus 451 ~~~~-~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~~~~~~- 524 (834)
.++- ....|-.... +++. ...-.+....++....+.|+ +.++..+...|-.-...+- +..+...+.
T Consensus 281 s~~y~r~e~p~Rlpl-svl~---~eel~~~vdkyL~~~l~Kg~----p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPL-SVLN---GEELKEIVDKYLRPLLSKGV----PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred hhcCcccccchhccH-HHhC---cchhHHHHHHHHHHHhhcCC----CchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 4310 0111111111 1111 11112222233333444444 3444555555443221111 111111111
Q ss_pred -------------CCChhHHHH--HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 525 -------------QRNVVSWTS--LMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 525 -------------~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
.|....|.. ++..|-..|+++.|+..++..+. -.|+ ..-|..=.+.+.+.|++++|..+++.
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 355556655 56677889999999999999988 5787 45566667889999999999999998
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHHH--HHhcCcHHHHHHHHHH
Q 003273 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP-T--------PIIWVALLNG--CRIHANVELGELAANR 656 (834)
Q Consensus 589 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~--------~~~~~~ll~~--~~~~g~~~~a~~~~~~ 656 (834)
..+ --.||...-.--+.-..|+.+.++|.++.....-.. + ...|-.+-.+ |.++|++.+|.+-+..
T Consensus 431 a~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 431 AQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 863 223454444456666778999999999876652111 1 2356555444 6777777666654433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-07 Score=93.38 Aligned_cols=442 Identities=13% Similarity=0.110 Sum_probs=237.9
Q ss_pred HHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 003273 107 IRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNA--LMAMYA--R 182 (834)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~~~--~ 182 (834)
+..+..+|++++|.....++...+ +-|...+.+-+-+..+.+.+++|..+.+ +.+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 344556788899999888887654 4444557676777777888887774332 2221 111222 244554 7
Q ss_pred CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CCccchHhHHHHhhccCCchhhhh
Q 003273 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ-GDGVSLVNALSACASLGTWSRGKQ 261 (834)
Q Consensus 183 ~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~t~~~~l~a~~~~~~~~~~~~ 261 (834)
.++.++|...++..... |..+...-...+.+.|++++|+++|+.+.+. +.. -|...-.+++.+-+.
T Consensus 92 lnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~--------- 158 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAA--------- 158 (652)
T ss_pred cccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHh---------
Confidence 89999999999855554 5556666677889999999999999999765 221 122222233332221
Q ss_pred cCcHHHHHHHHHhcCCC---ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-------------CCCCeee-HHHHHHH
Q 003273 262 CGMMEEAKKVFERMKVK---DVVSWNAMVTGYSRIGSFEDAFALFKKMRQEN-------------VKLNVVT-WSAVIAG 324 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~~-~~~li~~ 324 (834)
..+. +.+..+.. +-..+....-.+...|++.+|+++++.....+ +.-...+ ---|.-.
T Consensus 159 ----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 159 ----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred ----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0110 23333322 23333344556778999999999998873211 0001111 1123345
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhH---HHHHHHhhhhhchhhhh--hHHHHH----HHHHhhh-cCCCCCChhhHH
Q 003273 325 YAQRGHGHEALDVFRQMQFCGLEPNVVT---LVSLLSGCASVGALLLG--KETHCY----TIKRVLS-VDGSHPDDLMVI 394 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t---~~~ll~a~~~~~~~~~a--~~~~~~----~~~~~~~-~~~~~~~~~~~~ 394 (834)
+...|+.++|..+|...++... +|... +..=|.+...-.++..+ ...+.. ....... ...........-
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999988654 34322 22222222222222211 000000 0000000 000111122233
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh-cCChhHHHHHHHhhcccCCCCcCCc--ccHHHHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ-NGGANDALALFPQMFQQDKLVKPNA--FTLSCALMAC 471 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~g~~p~~--~t~~~ll~a~ 471 (834)
+.|+.+|. +..+.++++-...+...|....=+.+..++.. ...+.+|.+++...-+ -.|+. ......+.-.
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~----~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD----GHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----cCCchhHHHHHHHHHHH
Confidence 45566665 44556667666666433443333333333322 2356777777777654 23433 3334444555
Q ss_pred hhhhhHHHHHHHHH--------HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHH----
Q 003273 472 ARLAALRFGRQIHA--------YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK------QRNVVSWTS---- 533 (834)
Q Consensus 472 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~------~~~~~~~~~---- 533 (834)
...|+++.|..++. .+.+.+ ..|.+..+++.+|.+.++.+.|..++++.. .+.....+.
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~---~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAK---HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhc---cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 67788888888877 333333 345566777788888777777777766554 112222222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
...--.++|+.++|..+++++.+. ..+|..+...++.+|+.. +++.|..+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 222233456666666666666662 233455566666665554 34444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-08 Score=99.50 Aligned_cols=198 Identities=16% Similarity=0.105 Sum_probs=129.4
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...+..+...|...|++++|++.|++..+ ..| .+...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p-----------------------------------~~~~~~~~l 71 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE----HDP-----------------------------------DDYLAYLAL 71 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCc-----------------------------------ccHHHHHHH
Confidence 34566677777888888888888887765 234 233344556
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 003273 504 IDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMV 579 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 579 (834)
...|...|++++|.+.|++.. ..+...+..+...+...|++++|...|++.......|. ...+..+..++...|++
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 666667777777777776655 23445666667777777777777777777776432232 34555666677777888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-M-EPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|...++...+. .+.+...+..+...+...|++++|.+.+++.. . +.+...+..+...+...|+.+.|....+.+
T Consensus 152 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 152 DKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877777642 22235566777777777888888877777651 1 234455556666677778888887777766
Q ss_pred HhcCC
Q 003273 658 LELES 662 (834)
Q Consensus 658 ~~~~p 662 (834)
.+..|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 65543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-08 Score=92.77 Aligned_cols=162 Identities=16% Similarity=0.118 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVD 607 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 607 (834)
....|.-+|.+.|+...|..-+++.++ ..|+ ..++..+...|.+.|..+.|.+.|+... .+.| +.++.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345567789999999999999999999 6787 7788888889999999999999999887 4555 4678899999
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 608 LLGRANRLDEAVELIEGMPMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
.+|..|++++|...|++....|+ ..+|.++.....+.|+.+.|+..+++.++++|+++.+...+++...+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998844443 45888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 003273 684 VARIRSLMKHTGV 696 (834)
Q Consensus 684 a~~~~~~m~~~~~ 696 (834)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-08 Score=110.97 Aligned_cols=178 Identities=12% Similarity=0.024 Sum_probs=143.5
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003273 510 SGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
.+++++|...+++..+ .+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3568999999998873 3667888888889999999999999999999 6787 66788888899999999999999
Q ss_pred HHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 586 FDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMP--MEPT-PIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 586 ~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
++... .+.|+. ..+..+...+...|++++|++.+++.. ..|+ +..+..+..++...|+.++|...++++....
T Consensus 395 ~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 99987 445653 233344555777899999999998862 2354 4456677777889999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 662 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|++......++..|...| ++|...++.+.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 988888888888998888 4788877776653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-05 Score=87.27 Aligned_cols=206 Identities=16% Similarity=0.171 Sum_probs=129.8
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
.+..|..+|..|.-+...+|+++.+.+.|++..... .....|+.+-..|...|....|+.+++.-.. ..-.|+..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~--~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK--KSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc--cccCCCcchH
Confidence 456788899999999999999999999999875322 3567799999999999999999999998766 3233655443
Q ss_pred HHH-HHHH-hhhhhHHHHHHHHHHHHHhC--CC-ccchhHHhHHHHHHHhc-----------CCHHHHHHHHhhcC----
Q 003273 465 SCA-LMAC-ARLAALRFGRQIHAYVLRNQ--YE-MLIPFVANCLIDMYSRS-----------GDIDTARVVFDNLK---- 524 (834)
Q Consensus 465 ~~l-l~a~-~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~---- 524 (834)
..+ -..| .+.+..++|..+-..++... .. ...+..+-.+.-+|... ....++.+.+++..
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333 3344 34566777777666665511 10 02334444444444422 11344555666554
Q ss_pred -CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 525 -QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 525 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
.|++..|-+ --|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|+.+.+....++|.
T Consensus 476 ~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 476 TDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred CCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 233333332 235556677777777777777544445666666666666666777766666655544443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-08 Score=96.01 Aligned_cols=222 Identities=15% Similarity=0.070 Sum_probs=132.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 363 (834)
+-|..+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+-.+++.|+.+|.+-++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld-------------------- 284 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD-------------------- 284 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--------------------
Confidence 45666777777777777777766554 33455666666677777777777766666554
Q ss_pred chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhH
Q 003273 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGAND 442 (834)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 442 (834)
.+|-|+.........+-..++.++|.++++...+.++ ++.+...+..+|.-.++++-
T Consensus 285 ----------------------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 285 ----------------------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred ----------------------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHH
Confidence 3444444444455556666777777777777765554 56666667777777777777
Q ss_pred HHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 443 ALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 443 A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
|+..|+++++ .|+ .++..++.+.-++.-.++++-++.-|.+
T Consensus 343 AlryYRRiLq--mG~-------------------------------------~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 343 ALRYYRRILQ--MGA-------------------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHH--hcC-------------------------------------CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 7777777776 443 4555555555555555555555555554
Q ss_pred cC----CCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 523 LK----QRN--VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 523 ~~----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
.. +|+ ...|..+.......|++..|.+.|+-.+. -.|+ ...++.|.-.-.+.|++++|..++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 43 222 22455555555555666666666555544 2333 4455555555555555555555555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-06 Score=82.20 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHH--HHhcC-------ChhHHHHHHHhhcccCCCCcCCcc-c
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGS--YSQNG-------GANDALALFPQMFQQDKLVKPNAF-T 463 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~--~~~~g-------~~~~A~~l~~~m~~~~~g~~p~~~-t 463 (834)
--.|+-.|.+.+++++|..+.+.+....| +.-++.+ ++..| ...-|.+.|+-.-. .+..-|.+ .
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP----~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~--Sa~ecDTIpG 361 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTP----YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE--SALECDTIPG 361 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCCh----HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc--cccccccccc
Confidence 34567789999999999999988863222 2222222 22223 23345555544433 34443332 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH-HHHH
Q 003273 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLM-TGYG 539 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~ 539 (834)
-.++.+.+.-.-.++....++..+...-.. .|...+ .+..+++..|.+.+|+++|-.+.. +|-.+|-+++ .+|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 223333333344455555554444433222 222222 345555666666666666655553 2334444433 3455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHH
Q 003273 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL-YACSHSGMVDQGLKYFDSMSKEFGISARAEHY 602 (834)
Q Consensus 540 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 602 (834)
+.+.++.|.+++-++- ...+..+...+| .-|.+.+.+=-|.+.|+.+. .++|+++.|
T Consensus 440 ~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred hcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 5555555554443331 112233333332 24555555555555555442 344444444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-08 Score=104.22 Aligned_cols=250 Identities=17% Similarity=0.180 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCC-----C--CCCcch-HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCcc
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQP-----G--ICDIVS-WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 241 (834)
..+...|..+|...|+++.|..+++...+. | -|.+.+ -+.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 456666999999999999999999875433 2 233332 445677888999999999999888642
Q ss_pred chHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc-----CC-CCCe
Q 003273 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE-----NV-KLNV 315 (834)
Q Consensus 242 t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~ 315 (834)
-..+|..+...-..+++.|...|.+.|++++|...+++..+- |. .|.+
T Consensus 271 --------------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 271 --------------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred --------------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 011111222223456788888899999999999888765431 10 0111
Q ss_pred e-eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCC-ChhhH
Q 003273 316 V-TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP-DDLMV 393 (834)
Q Consensus 316 ~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~ 393 (834)
. .++.++..+...+++++|..+++ ...+......+... .-..+
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q-----------------------------------~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQ-----------------------------------KALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHH-----------------------------------HHHHHHHhhccccchHHHHH
Confidence 1 13333444444555555555554 44443332222222 34567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCC-----C----CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc---
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKN-----R----DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA--- 461 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~--- 461 (834)
++.|...|.+.|++++|+++|+++.... . .-...+.|...|.+.+++.+|.++|.+...-..-+.|+.
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 8999999999999999999999875431 1 134567888889999999999998887654111122332
Q ss_pred -ccHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003273 462 -FTLSCALMACARLAALRFGRQIHAYVL 488 (834)
Q Consensus 462 -~t~~~ll~a~~~~~~~~~a~~~~~~~~ 488 (834)
.+|..+...|...|+++.|.++...+.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234444444444444444444444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-06 Score=87.22 Aligned_cols=364 Identities=11% Similarity=0.035 Sum_probs=229.2
Q ss_pred HHHHHHhhCCCchhHHHHhcccCCCCcchhhH-HHHHHHHHhCC-C-chh-------------HHHHHHHHHHcC-----
Q 003273 72 HLIAAYVSHNAPSPALSLLQRISPSPFSVFWW-NALIRRAVRLR-L-PDN-------------AFRLFLQMMRRG----- 130 (834)
Q Consensus 72 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-~~li~~~~~~g-~-~~~-------------a~~~~~~m~~~g----- 130 (834)
..+..|...++-+.|.....+.|+... ..- |.|+.-+-..| + .++ |+....-..+.+
T Consensus 102 ~~aecy~~~~n~~~Ai~~l~~~p~t~r--~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 102 RAAECYRQIGNTDMAIETLLQVPPTLR--SPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHccchHHHHHHhcCCcccc--chhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 355667777888899999988886554 223 33333333332 1 111 222222222222
Q ss_pred ----------CCCCcccHHHHHHHHcc--CCCchHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcC
Q 003273 131 ----------WHPDEYTFPFVLKACGE--LPSSRCGSSVHAVICS-SGFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197 (834)
Q Consensus 131 ----------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 197 (834)
+.|...+...-+.+++. .++...+.+.+-.+.. .-++.|+....++...|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 22333333333333332 2333333343333333 2367788899999999999999999999999888
Q ss_pred CCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCC
Q 003273 198 QPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKV 277 (834)
Q Consensus 198 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 277 (834)
..++-++.+.....-.+.+.|+.+..-.+...+-.. . +-...-| ++.+|..- ...+++.|+.+-++..+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~-~~ta~~w--fV~~~~l~-------~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-V-KYTASHW--FVHAQLLY-------DEKKFERALNFVEKCID 328 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-h-hcchhhh--hhhhhhhh-------hhhhHHHHHHHHHHHhc
Confidence 774434444444445567788888887777776532 1 0111111 11111100 34556667666665543
Q ss_pred ---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 003273 278 ---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLV 354 (834)
Q Consensus 278 ---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 354 (834)
+++..+-.-...+...|+.++|.-.|+..+...+. +..+|..|+..|...|++.||.-+-+...+. +..+..+++
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 34555555567788899999999999988765444 7889999999999999999988776654432 112233333
Q ss_pred HH--HHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHH
Q 003273 355 SL--LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIG 432 (834)
Q Consensus 355 ~l--l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~ 432 (834)
.+ .-.+-....-+.|+.+++..++ ..|.-....+.+...+...|..+++..+++.-....+|....+.+..
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~-------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLK-------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGD 479 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhc-------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHH
Confidence 33 1122233345677777777665 23444556778888889999999999999988766789999999999
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcCCc
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.+...+.+.+|++.|...++ +.|+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr----~dP~~ 504 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALR----QDPKS 504 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHh----cCccc
Confidence 99999999999999999877 56643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-07 Score=96.08 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=148.5
Q ss_pred ChHHHHHHHHhcCCCC---C--CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHH
Q 003273 406 SVDVARVMFDAIAPKN---R--DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 480 (834)
..+.+..-+.++.... + ....|..+...|...|+.++|...|++.++ ..|
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P--------------------- 95 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA----LRP--------------------- 95 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCC---------------------
Confidence 3444555554444221 1 123466666667777777777777777665 344
Q ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003273 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE 557 (834)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 557 (834)
.++..++.+...|...|++++|...|++.. .| +..+|..+...+...|++++|++.|++..+
T Consensus 96 --------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~- 160 (296)
T PRK11189 96 --------------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ- 160 (296)
T ss_pred --------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 566778889999999999999999999886 34 466888888899999999999999999998
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH--HHHHHHHHhC-CCC----C-
Q 003273 558 GLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL--DEAVELIEGM-PME----P- 629 (834)
Q Consensus 558 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~~~----p- 629 (834)
..|+..........+...++.++|...|..... ...|+... ..++..+ .|++ +++.+.+.+. ... |
T Consensus 161 -~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 161 -DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAER 234 (296)
T ss_pred -hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHH
Confidence 567643222222234556789999999976553 33343222 2333333 4444 3334333322 111 2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CCchHHHHHHHH
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELESE-KDGSYTLLSNIY 675 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~ 675 (834)
....|..+...+...|+.++|+..|+++++.+|. ....-..++...
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 2357889999999999999999999999999974 444444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-05 Score=85.29 Aligned_cols=200 Identities=16% Similarity=0.096 Sum_probs=95.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC-----hhHHHHHH------
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN-----VVSWTSLM------ 535 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-----~~~~~~li------ 535 (834)
+..-+...|++..|..-+ ....-+.+-++||..++-+++|.++-+.---.| ...|..-|
T Consensus 888 f~~e~e~~g~lkaae~~f----------lea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHF----------LEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHhccChhHHHHHH----------HhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 334444455555555544 223334677788888888888888776443222 22343222
Q ss_pred HHHHHcCChHHHHH-------------HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh--cCC-----
Q 003273 536 TGYGMHGLGDKAHW-------------AFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKE--FGI----- 595 (834)
Q Consensus 536 ~~~~~~g~~~~A~~-------------l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~----- 595 (834)
..+.++|..++++. +-+-..+. -.| .....+..-+...|++++|.+.+-+.++- |++
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~--~vhlk~a~~ledegk~edaskhyveaiklntynitwcqa 1034 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMG--EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQA 1034 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCc--cchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhc
Confidence 22334444444333 22222211 111 12223334456788888887776655532 111
Q ss_pred CCChHHH---------HHHHHHHhhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 596 SARAEHY---------ACIVDLLGRANRLDEAVELIEGMPMEPTP--IIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 596 ~p~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
.|+..-. .--+.++.+..++..|..+-+.-- ||. .++..-..+....|+...|+..+-+ ...|+
T Consensus 1035 vpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fllr--ankp~- 1109 (1636)
T KOG3616|consen 1035 VPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLLR--ANKPD- 1109 (1636)
T ss_pred ccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhheee--cCCCc-
Confidence 1111000 012334444444555444443321 221 2333333334455666555554222 22343
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHH
Q 003273 665 DGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 665 ~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
...+-|...+.|.+|.++-+
T Consensus 1110 -----i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1110 -----IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred -----hHHHHHHHhccChHHHHHHH
Confidence 34567889999999998754
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-06 Score=92.04 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=114.8
Q ss_pred CCCc-hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-Cccch
Q 003273 166 FDSN-VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG-DGVSL 243 (834)
Q Consensus 166 ~~~~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~ 243 (834)
+.++ ...|..|...|...-+...|.+.|+...+-+..|..+|......|++..+++.|..+.-...+. .| -...+
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk---a~a~~~k~ 563 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK---APAFACKE 563 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh---chHHHHHh
Confidence 3444 4578899999988888999999999988887778999999999999999999999984333221 11 00111
Q ss_pred HhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHH
Q 003273 244 VNALSACASLGTWSRGKQCGMMEEAKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSA 320 (834)
Q Consensus 244 ~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 320 (834)
+-+-.+.. .. +.++...|..-|+... ..|...|..+..+|.++|++..|.++|.+.... ++.++-.
T Consensus 564 nW~~rG~y-----yL--ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L----rP~s~y~ 632 (1238)
T KOG1127|consen 564 NWVQRGPY-----YL--EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL----RPLSKYG 632 (1238)
T ss_pred hhhhcccc-----cc--CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc----CcHhHHH
Confidence 11111111 10 4566666777676554 347888999999999999999999999988765 2222222
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHH
Q 003273 321 ---VIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 321 ---li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
....-+..|.+.+|++.+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22344678999999998888764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-05 Score=80.41 Aligned_cols=412 Identities=11% Similarity=0.035 Sum_probs=253.9
Q ss_pred cCcHHHHHHHHHhcCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH
Q 003273 262 CGMMEEAKKVFERMKV---KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF 338 (834)
Q Consensus 262 ~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 338 (834)
.|+.++|......... .+.+.|..+.-.+-...++++|++.|......+.. |...|.-+--.-.+.|+++...+.-
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3555555555544442 45678888888888889999999999998877655 7777887777778888888888777
Q ss_pred HHHHHCCCCCC-HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHH------HHHHHhCCChHHHH
Q 003273 339 RQMQFCGLEPN-VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL------IDMYAKCKSVDVAR 411 (834)
Q Consensus 339 ~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l------i~~y~~~g~~~~A~ 411 (834)
....+.. |. ...|..+..+..-.|+...+..+.+...+.. ...|+...+.-. .....+.|..+.|.
T Consensus 133 ~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~-----~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 133 NQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ-----NTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 7776632 33 3456667777778899999999998888862 123444333322 23456788888888
Q ss_pred HHHHhcCCCCCCccch-HHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh--hhhhHHHHHHHHHHHH
Q 003273 412 VMFDAIAPKNRDVATW-TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA--RLAALRFGRQIHAYVL 488 (834)
Q Consensus 412 ~~f~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~ 488 (834)
+-+......--|-..+ .+...-+.+.+++++|..++...+. ..||..-|.-.+..|. -.+..+.-..+++...
T Consensus 206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE----RNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh----hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8877665322343333 3455677899999999999999987 6788888777766665 2333333335555443
Q ss_pred HhCCCccchhHHhHHHHHHHhcCCHHHH-HHHHhhcCCCC-hhHHHHHHHHHHHcCChHH----HHHHHHHHHHcC----
Q 003273 489 RNQYEMLIPFVANCLIDMYSRSGDIDTA-RVVFDNLKQRN-VVSWTSLMTGYGMHGLGDK----AHWAFDQMRKEG---- 558 (834)
Q Consensus 489 ~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g---- 558 (834)
+.-.. ........ ++ ...-.++.+. -+++..+.++. +..+..+.+-|-.-...+- +..+...+-..|
T Consensus 282 ~~y~r-~e~p~Rlp-ls-vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 282 EKYPR-HECPRRLP-LS-VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred hcCcc-cccchhcc-HH-HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 32111 00000000 00 0000112222 12222222221 2233333333322211111 111111111111
Q ss_pred ------CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-
Q 003273 559 ------LAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMP-M- 627 (834)
Q Consensus 559 ------~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 627 (834)
-.|. ..|+..+...+-+.|+++.|..+.+..+ +..|+ ++.|-.-..++...|.+++|..++++.. .
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 1344 3456667778999999999999999887 56676 5677777889999999999999999884 2
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--------hHH--HHHHHHHhcCCchhHHHHHHHHH
Q 003273 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG--------SYT--LLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--------~~~--~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
.||..+=.--.....+.++.++|.+++.+...-+-+ .. .|. -=+.+|.++|+|.+|.+-+..+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~-~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG-AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc-hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 245443333344456778899999998888776541 11 122 23556888899988877665553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-06 Score=90.11 Aligned_cols=260 Identities=14% Similarity=0.147 Sum_probs=173.2
Q ss_pred CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHH-h-----cCChhHHHHHHHhhcccCCCCcCCc
Q 003273 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS-Q-----NGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 388 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~-~-----~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.....+.......|.+.|+.++|..+|..+...+|+...|-..+..+. . ....+...++|+++.. ..|..
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~----~yp~s 110 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE----KYPRS 110 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH----hCccc
Confidence 334445566777888888888888888888877787666655444443 1 2246677888888765 33544
Q ss_pred ccHHHHHHHHhhhhhH-HHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----------------
Q 003273 462 FTLSCALMACARLAAL-RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---------------- 524 (834)
Q Consensus 462 ~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---------------- 524 (834)
.....+.-.+.....+ ..+..+.....+.|+ |.+++.|-..|....+.+-...++....
T Consensus 111 ~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv----PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~ 186 (517)
T PF12569_consen 111 DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV----PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEE 186 (517)
T ss_pred cchhHhhcccCCHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccc
Confidence 4333332222221222 344445555555555 3566777777776555555555554432
Q ss_pred --CCChhHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-C
Q 003273 525 --QRNVVSW--TSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-R 598 (834)
Q Consensus 525 --~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~ 598 (834)
.|....| .-+...|-..|++++|++++++.++ ..|+ ...|..-...+-+.|++++|.+.++..+ .+++ |
T Consensus 187 ~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~D 261 (517)
T PF12569_consen 187 KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLAD 261 (517)
T ss_pred cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhh
Confidence 1333345 5556678889999999999999999 6787 6778888889999999999999999886 4444 3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CC--C----HHHHHH--HHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMPM---EP--T----PIIWVA--LLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p--~----~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
-..-+-.+.-+.|+|++++|.+.+..... .| | ...|-- ...+|.+.|+...|.+-+..+.+.
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44455667778899999999998876631 11 1 225543 444588999999999887777664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-06 Score=82.28 Aligned_cols=206 Identities=13% Similarity=0.051 Sum_probs=118.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH---hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHH-HH
Q 003273 321 VIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS---GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI-NA 396 (834)
Q Consensus 321 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 396 (834)
+...+...|++.+|+.-|...++ -|+..|.++.+ .|...|....|..-+..++. +.||.... ..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--------lKpDF~~ARiQ 111 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--------LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--------cCccHHHHHHH
Confidence 44556667778888888777765 34444444433 23444555555555555543 24443221 12
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 397 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
-...+.|.|.++.|..-|+.+...+|+..+- ..++.+.-..++-. .....+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~---~eaqskl~~~~e~~------------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLV---LEAQSKLALIQEHW------------------VLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchh---HHHHHHHHhHHHHH------------------HHHHHHHHHhcCCc
Confidence 3345666777777777777766444432211 11111111111111 12223334445566
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
...+..+...+++... .+...+..-..+|...|++..|..=++... ..+.....-+-..+-..|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6666666666666543 677777778888888888888876555443 45566666666677778888888888888
Q ss_pred HHHcCCCCCh
Q 003273 554 MRKEGLAPDG 563 (834)
Q Consensus 554 m~~~g~~p~~ 563 (834)
-++ +.||.
T Consensus 249 CLK--ldpdH 256 (504)
T KOG0624|consen 249 CLK--LDPDH 256 (504)
T ss_pred HHc--cCcch
Confidence 777 67774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-05 Score=82.49 Aligned_cols=297 Identities=11% Similarity=0.080 Sum_probs=148.5
Q ss_pred HHHHHhCCChhHHHHHHHhcCCCCCCCcch-HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCC
Q 003273 177 MAMYARCDTLSYARQLFDEMFQPGICDIVS-WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGT 255 (834)
Q Consensus 177 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~ 255 (834)
...+...|++++|++.+++-... ++|..+ .......+.+.|+.++|..+|+.+... .|+...|-..+..|.....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhc
Confidence 44567789999999988774433 345444 555677888889999999999998854 6777777666655541110
Q ss_pred chhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh-hHH
Q 003273 256 WSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG-HEA 334 (834)
Q Consensus 256 ~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A 334 (834)
+ ....+.+....+|+++...- |...+...+.-.+.....+ ..+
T Consensus 87 -------~---------------------------~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~ 130 (517)
T PF12569_consen 87 -------Q---------------------------LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERL 130 (517)
T ss_pred -------c---------------------------cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHH
Confidence 0 01113344445555554432 1111111111111111112 233
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhc---C-----CCCCChh--hHHHHHHHHHHhC
Q 003273 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSV---D-----GSHPDDL--MVINALIDMYAKC 404 (834)
Q Consensus 335 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~---~-----~~~~~~~--~~~~~li~~y~~~ 404 (834)
..++..+...|+++ +|+.+-..|...........+........... . ..-+|.. +++.-|...|-..
T Consensus 131 ~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 44455556666533 23333333332222222222222222211000 0 0122333 2334445556666
Q ss_pred CChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHH
Q 003273 405 KSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQI 483 (834)
Q Consensus 405 g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 483 (834)
|++++|.+..++.....|+ +..|..-...|-+.|++.+|.+.++..+. +.+
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~------------------------ 259 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDL------------------------ 259 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CCh------------------------
Confidence 6666666666665544454 33455555556666666666666666544 222
Q ss_pred HHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hHHH--HHHHHHHHcCChHHHHHHH
Q 003273 484 HAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV----------VSWT--SLMTGYGMHGLGDKAHWAF 551 (834)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~----------~~~~--~li~~~~~~g~~~~A~~l~ 551 (834)
.|..+-+-.+..+.++|++++|.+++....+++. ..|- ....+|.+.|++..|+..|
T Consensus 260 -----------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 260 -----------ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred -----------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555556666666666666666655553331 1232 2344566666666666655
Q ss_pred HHHH
Q 003273 552 DQMR 555 (834)
Q Consensus 552 ~~m~ 555 (834)
....
T Consensus 329 ~~v~ 332 (517)
T PF12569_consen 329 HAVL 332 (517)
T ss_pred HHHH
Confidence 5443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.0002 Score=77.94 Aligned_cols=248 Identities=13% Similarity=0.091 Sum_probs=140.3
Q ss_pred HHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHc-C--------CCCCcccHHHHHHHHc
Q 003273 76 AYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRR-G--------WHPDEYTFPFVLKACG 146 (834)
Q Consensus 76 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~t~~~ll~~~~ 146 (834)
.|..-|+.+.|.+-...+... ..|..|.+.+.+..+.+-|.-.+..|... | -.|+ .+=..+.-...
T Consensus 737 fyvtiG~MD~AfksI~~IkS~----~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD----SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh----HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 456678888887766555422 56999999998888888777766666421 1 1222 22222222234
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 003273 147 ELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLML 226 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 226 (834)
..|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.=.+-. =-.||.....-+-..++.+.|++.
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHH
Confidence 677888888888876653 234456777899999988876432221 113455566666677888888888
Q ss_pred HHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003273 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKM 306 (834)
Q Consensus 227 ~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 306 (834)
|++-... .+...-+|.- ......+....+ +|...|.-....+-..|+++.|+.+|...
T Consensus 881 yEK~~~h------afev~rmL~e--------------~p~~~e~Yv~~~--~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 881 YEKAGVH------AFEVFRMLKE--------------YPKQIEQYVRRK--RDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHhcCCh------HHHHHHHHHh--------------ChHHHHHHHHhc--cchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 8765321 0001111110 111112222222 34445555555566677777777777665
Q ss_pred HhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHH
Q 003273 307 RQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376 (834)
Q Consensus 307 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 376 (834)
.. |-+++...|-.|+.++|-.+-++- -|....-.+.+.|-+.|++.+|..+|-.+
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 43 455555566666666666655542 23333334455555555555555554433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-06 Score=80.41 Aligned_cols=351 Identities=12% Similarity=0.073 Sum_probs=189.9
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHH-HHHHHHHh
Q 003273 138 FPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWN-TIVAAYAQ 216 (834)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~li~~~~~ 216 (834)
|.+++..+.+..+...+.+++..-.+.. +.+....+.|...|....++..|-..++++....| ...-|. --...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHHHHHHH
Confidence 4455555555555666666555544432 22444455566666666677777777766654322 111111 12344556
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC-CCChhHHHHHHHHHHcCCC
Q 003273 217 SGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-VKDVVSWNAMVTGYSRIGS 295 (834)
Q Consensus 217 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~~g~ 295 (834)
.+.+..|+++...|... |+-..-..-+.+...- ..+++..++.+.+..+ +.+..+.+...-...+.|+
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkY-------se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKY-------SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhc-------ccccCcchHHHHHhccCCCccchhccchheeecccc
Confidence 66677777777666432 2111111111111100 3455666667777766 4566666666667788999
Q ss_pred HHHHHHHHHHhHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHH-HHHHHhhhhhchhhhhhHHH
Q 003273 296 FEDAFALFKKMRQE-NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTL-VSLLSGCASVGALLLGKETH 373 (834)
Q Consensus 296 ~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~~~ 373 (834)
+++|.+-|+...+- |.. ....||..+ ++.+.|+++.|+++..++++.|++-.+..= .....+ .....+..-..+|
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHH
Confidence 99999999988765 444 566777655 456778999999999999988875322100 000000 0000000111111
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---CCccchHHHHHHHHhcCChhHHHHHHHhh
Q 003273 374 CYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---RDVATWTVMIGSYSQNGGANDALALFPQM 450 (834)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 450 (834)
...+ +..+|--...+.+.|+.+.|.+.+-.|+.+. .|++|...+.-.- ..+++-+..+-+.-+
T Consensus 237 ~Sal-------------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 237 QSAL-------------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL 302 (459)
T ss_pred HHHH-------------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH
Confidence 1111 1123334455678899999999999998653 4677765543221 234455555545545
Q ss_pred cccCCCCcC-CcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 451 FQQDKLVKP-NAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 451 ~~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
+. +.| ...||..++-.|++..-++.|-.++..-...-+.-.++..|+.|-....-.-..++|.+-++.
T Consensus 303 L~----~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 303 LQ----QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred Hh----cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44 233 345888888888888888887777654332222213344444332222223345555554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00069 Score=75.62 Aligned_cols=462 Identities=14% Similarity=0.108 Sum_probs=239.0
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHH----------HHHHHHHHHh---------
Q 003273 104 NALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCG----------SSVHAVICSS--------- 164 (834)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a----------~~~~~~~~~~--------- 164 (834)
+-|..-.-+.++..--+..++.....|. .|..|++++.+.|..+.+-.+- +.+=....++
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEee
Confidence 3344444455566666667777777774 3777888888877665543321 1111111111
Q ss_pred --CCCCc---------hhHHHHHHHHHHhCCChhHH-----------HHHHHhcCCCCCC---CcchHHHHHHHHHhCCC
Q 003273 165 --GFDSN---------VFVCNALMAMYARCDTLSYA-----------RQLFDEMFQPGIC---DIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 165 --g~~~~---------~~~~~~Li~~~~~~g~~~~A-----------~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~ 219 (834)
| .-| ...+..+.+-+.+..+.+-= +++.|+..+.+.| |...-..-+.++...+-
T Consensus 921 erG-qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 921 ERG-QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ccc-CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 1 001 11222333333333333322 2344444444433 55566677889999999
Q ss_pred hhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC-------------Cchh------hhhcCcHHHHHHHHHhcCCCCh
Q 003273 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG-------------TWSR------GKQCGMMEEAKKVFERMKVKDV 280 (834)
Q Consensus 220 ~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~-------------~~~~------~~~~g~~~~A~~~~~~~~~~d~ 280 (834)
+.+-+++++++.-....-.....+-.++-.-+... +++. +...+.+++|..+|+.. ..+.
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-~~n~ 1078 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-DMNV 1078 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-cccH
Confidence 99999999998643122112222222211111000 0000 00334445555555442 1222
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhh
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGC 360 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 360 (834)
...+.||. .-+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|+..|..++..+
T Consensus 1079 ~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a 1143 (1666)
T KOG0985|consen 1079 SAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVA 1143 (1666)
T ss_pred HHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHH
Confidence 22333332 2234455544444332 4456788888888888888887776543 4566677777777
Q ss_pred hhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCCh
Q 003273 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440 (834)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 440 (834)
.+.|.++.-...+..+.+. ..+| .+-+.||-+|++.+++.+-+++. . +||+.....+..-+...|.+
T Consensus 1144 ~~~~~~edLv~yL~MaRkk------~~E~--~id~eLi~AyAkt~rl~elE~fi---~--gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1144 SRTGKYEDLVKYLLMARKK------VREP--YIDSELIFAYAKTNRLTELEEFI---A--GPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HhcCcHHHHHHHHHHHHHh------hcCc--cchHHHHHHHHHhchHHHHHHHh---c--CCCchhHHHHhHHHhhhhhh
Confidence 7777777777766666655 3333 23456777777777766655543 2 56666666666666666666
Q ss_pred hHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHH
Q 003273 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520 (834)
Q Consensus 441 ~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 520 (834)
+.|.-+|...-. |..+...+...|.+..|..--..+ .+..+|...-.++...+.+.-|.
T Consensus 1211 ~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--- 1269 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--- 1269 (1666)
T ss_pred HHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH---
Confidence 666655544321 334444444444444433322221 33444444444444433333221
Q ss_pred hhcCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 521 DNLKQRN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 521 ~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
|.--+ ..-..-++.-|-..|-+++.+.+++..+. +.-- .-.|+-|.-.|++ -.+++..+.++..-.+.++
T Consensus 1270 --iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNi 1344 (1666)
T KOG0985|consen 1270 --ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNI 1344 (1666)
T ss_pred --hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcch
Confidence 11111 11244567777788888888887776543 3332 2334444444444 2345444444433222232
Q ss_pred C------CChHHHHHHHHHHhhcCCHHHHHHHH
Q 003273 596 S------ARAEHYACIVDLLGRANRLDEAVELI 622 (834)
Q Consensus 596 ~------p~~~~~~~l~~~~~~~g~~~~A~~~~ 622 (834)
+ ....+|+-++-+|.+-..++.|.-..
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKYEEYDNAALTM 1377 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2 12567888888888888887765544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7e-06 Score=88.78 Aligned_cols=413 Identities=12% Similarity=0.117 Sum_probs=196.2
Q ss_pred CchhHHHHHHH--HHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHh
Q 003273 168 SNVFVCNALMA--MYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVN 245 (834)
Q Consensus 168 ~~~~~~~~Li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 245 (834)
-|..+..++++ .|..-|+.|.|.+-.+.+... ..|..|.+.+.+..+.+-|.-.+-.|....|.+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~-----~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-------- 790 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD-----SVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-------- 790 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh-----HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH--------
Confidence 46677777765 477889999999888877644 679999999999999999988888886431211
Q ss_pred HHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHH
Q 003273 246 ALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGY 325 (834)
Q Consensus 246 ~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 325 (834)
.+-+....++ ..-....-.....|.+++|..+|++-... ..|=..|
T Consensus 791 ------------------------AlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKly 836 (1416)
T KOG3617|consen 791 ------------------------ALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLY 836 (1416)
T ss_pred ------------------------HHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHH
Confidence 0000001111 11111111122345555555555554432 2233344
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCC
Q 003273 326 AQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCK 405 (834)
Q Consensus 326 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 405 (834)
...|.+++|+++-+.=-+-.++ .||..-..-+-..++.+.|.+.++..-.+ -..+...|. .
T Consensus 837 Qs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~h----------afev~rmL~------e 897 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVH----------AFEVFRMLK------E 897 (1416)
T ss_pred HhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCCh----------HHHHHHHHH------h
Confidence 4455555555544332111111 12222222222233333333333322111 001111110 0
Q ss_pred ChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHA 485 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 485 (834)
.+..-++..+.+. |...|.=-..-+-..|+.+.|+.+|..... |-++++..+-.|..++|-++-.
T Consensus 898 ~p~~~e~Yv~~~~----d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred ChHHHHHHHHhcc----chHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeeccCchHHHHHHH
Confidence 1111111222222 222222222233345666666666665543 3344444455566666655544
Q ss_pred HHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcC---------------ChHHHHHH
Q 003273 486 YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHG---------------LGDKAHWA 550 (834)
Q Consensus 486 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---------------~~~~A~~l 550 (834)
.- .+......|..+|-..|++.+|...|.+.. ++..-|..|-.++ +.-.|..+
T Consensus 963 es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 963 ES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred hc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 32 344455567777777777777777776653 2222222222221 11222333
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH---------HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 551 FDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKY---------FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 551 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
|++. |.. +...+-.|-++|.+.+|+++ ++.+.++..-..|+...+.-.+.++...++++|..+
T Consensus 1031 yEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1031 YEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3321 111 11112234455555555543 333334333344566666667777777777777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CC---CCchHHHHHHHHHhcCCchhHHHHH
Q 003273 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELE---SE---KDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 622 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+-... -+.--+..|... ++...++..+.+.--. |+ .......++..|.++|.|..|.+-|
T Consensus 1103 L~~ar------~~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1103 LCLAR------EFSGALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHH------HHHHHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 64432 223333334333 3444445544443221 11 1135667788888888887766654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=97.73 Aligned_cols=222 Identities=15% Similarity=0.136 Sum_probs=155.0
Q ss_pred HHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 400 MYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
-+.+.|++.+|.-.|+....++| +...|--|......+++-..|+..+++.++ +.|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~----LdP~------------------ 351 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE----LDPT------------------ 351 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh----cCCc------------------
Confidence 35667778888888877766565 567777777777777777777777777766 5553
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG 558 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 558 (834)
+..+.-+|.-.|...|.-.+|.+.++ .-+...
T Consensus 352 -----------------NleaLmaLAVSytNeg~q~~Al~~L~-------------------------------~Wi~~~ 383 (579)
T KOG1125|consen 352 -----------------NLEALMALAVSYTNEGLQNQALKMLD-------------------------------KWIRNK 383 (579)
T ss_pred -----------------cHHHHHHHHHHHhhhhhHHHHHHHHH-------------------------------HHHHhC
Confidence 22222333333444444444444444 333211
Q ss_pred CC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003273 559 LA--------PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP 629 (834)
Q Consensus 559 ~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 629 (834)
.+ ++..+-.. ..+.+...+....++|-.+....+..+|++++.+|.-+|--.|.++.|.+.|+.+ ..+|
T Consensus 384 p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 384 PKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred ccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 00 00000000 1122222344555666666655576788899999999999999999999999987 4456
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 630 -TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 630 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
|...||-|...+....+.++|+.+|.+++++.|.-..+.+.|+-.|...|.+.||.+.+=....
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5779999999999999999999999999999999999999999999999999999998866654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-06 Score=79.69 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=149.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHH
Q 003273 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507 (834)
Q Consensus 428 ~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 507 (834)
-.+.-+|.+.|+...|..-+++.++ ..| .+...+..+...|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~----~DP-----------------------------------s~~~a~~~~A~~Y 79 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALE----HDP-----------------------------------SYYLAHLVRAHYY 79 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----hCc-----------------------------------ccHHHHHHHHHHH
Confidence 3466788888888888888888877 444 4455667777888
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 003273 508 SRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 508 ~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+.|..+.|.+-|++.. ..+-...|....-+|.+|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|.
T Consensus 80 q~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 80 QKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred HHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 88888888888888776 34556777777788889999999999999887433333 678888888888899999999
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 584 KYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
.+|+...+ +.|+ ......+.+...+.|++.+|..+++... ..++..+..-.+..-...||...+-+.-.++...
T Consensus 160 ~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 160 EYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99988764 3343 4567778888899999999999888762 3366666666666677888888888777788888
Q ss_pred CCCCC
Q 003273 661 ESEKD 665 (834)
Q Consensus 661 ~p~~~ 665 (834)
.|...
T Consensus 237 fP~s~ 241 (250)
T COG3063 237 FPYSE 241 (250)
T ss_pred CCCcH
Confidence 88644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00045 Score=72.21 Aligned_cols=458 Identities=12% Similarity=0.121 Sum_probs=244.4
Q ss_pred chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003273 99 SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMA 178 (834)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 178 (834)
+..+|+.||+-+-.. ..+++.+.++++... ++..+..|..-+..-....+++....+|.+.+..- .+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 448899999877555 888999999998753 44455667777788788888998999998887764 34556666665
Q ss_pred HHHh-CCChhHHH----HHHHhcC-CCCC--CCcchHHHHHHH---------HHhCCChhHHHHHHHHhhhCCCCCCCcc
Q 003273 179 MYAR-CDTLSYAR----QLFDEMF-QPGI--CDIVSWNTIVAA---------YAQSGDAEGGLMLFARMTGDVKVQGDGV 241 (834)
Q Consensus 179 ~~~~-~g~~~~A~----~~~~~m~-~~~~--~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 241 (834)
---+ .|+...++ +.|+-.. +.|. ..-..|+..|.- |..+.+.+...++|+++...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-------- 166 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-------- 166 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC--------
Confidence 3322 33433322 2233221 1121 244456666543 33444566666677666543
Q ss_pred chHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC-CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHh--cCCCCCeeeH
Q 003273 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQ--ENVKLNVVTW 318 (834)
Q Consensus 242 t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~~~ 318 (834)
-.+.+++-.+-|.... +-|..+-..++. -+...+..|.++++++.. +|...+..+
T Consensus 167 -------------------Pm~nlEkLW~DY~~fE~~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~- 224 (656)
T KOG1914|consen 167 -------------------PMHNLEKLWKDYEAFEQEINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPA- 224 (656)
T ss_pred -------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCC-
Confidence 2223333322222211 112222222221 133456777777777653 343322222
Q ss_pred HHHHHHHHhcCChhH--HHHHHHHHHH----CCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhh
Q 003273 319 SAVIAGYAQRGHGHE--ALDVFRQMQF----CGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392 (834)
Q Consensus 319 ~~li~~~~~~g~~~~--A~~l~~~m~~----~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 392 (834)
.-..|-.++ +.+++....+ .++..-..+..+ ....-++++.+... ++.|++.
T Consensus 225 ------vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~-----------~Rv~yayeQ~ll~l-----~~~peiW 282 (656)
T KOG1914|consen 225 ------VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT-----------RRVMYAYEQCLLYL-----GYHPEIW 282 (656)
T ss_pred ------CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH-----------HHHHHHHHHHHHHH-----hcCHHHH
Confidence 001111111 1222222211 111100000000 00000111111100 2222222
Q ss_pred HHH-----HHHHHHHhCCChH-------HHHHHHHhcCCCC--CCccchHHHHHHH---HhcCChhHHHHHHHhhcccCC
Q 003273 393 VIN-----ALIDMYAKCKSVD-------VARVMFDAIAPKN--RDVATWTVMIGSY---SQNGGANDALALFPQMFQQDK 455 (834)
Q Consensus 393 ~~~-----~li~~y~~~g~~~-------~A~~~f~~~~~~~--~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~~~ 455 (834)
... ..-+.+...|+.. ++..+++...... .+..+|..+..-= ..-.+.+...+.+.+.+.. .
T Consensus 283 y~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~ 361 (656)
T KOG1914|consen 283 YDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-E 361 (656)
T ss_pred HHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-h
Confidence 111 1122344444433 3444444433100 1222222221100 1111345556666666541 2
Q ss_pred CCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hHHH
Q 003273 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNV-VSWT 532 (834)
Q Consensus 456 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~ 532 (834)
...|+ .+|...++..-+..-+..|+.+|..+.+.+..+.++.++++++..|+ .++.+-|.++|+.-.+ +|. ..-+
T Consensus 362 ~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~ 439 (656)
T KOG1914|consen 362 DIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVL 439 (656)
T ss_pred ccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHH
Confidence 23343 46777888888888899999999999988877458888899998777 4778888899886552 343 3445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHH
Q 003273 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG--ISARAEHYACIVDL 608 (834)
Q Consensus 533 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~l~~~ 608 (834)
..+.-+...++-..|..+|++.+..++.|| ...|..+|.-=+.-|++..+.++-+.+...+. ..|...+-..+++.
T Consensus 440 ~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~R 519 (656)
T KOG1914|consen 440 KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDR 519 (656)
T ss_pred HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHH
Confidence 566667778888888889998888877776 46688888888888888888887776655444 44444445556666
Q ss_pred HhhcCCH
Q 003273 609 LGRANRL 615 (834)
Q Consensus 609 ~~~~g~~ 615 (834)
|+=.+..
T Consensus 520 Y~~~d~~ 526 (656)
T KOG1914|consen 520 YGILDLY 526 (656)
T ss_pred Hhhcccc
Confidence 6555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=76.85 Aligned_cols=400 Identities=12% Similarity=0.051 Sum_probs=220.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccch--HhHHHH
Q 003273 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSL--VNALSA 249 (834)
Q Consensus 172 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~--~~~l~a 249 (834)
-+++.+..+.+..++++|++++..-.++.+.+......|..+|....++..|-+.|.++... .|...-| -..-+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 35666777788889999999998887776667788899999999999999999999999754 3332222 111111
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCCC-ChhHHHHHH--HHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHH
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKVK-DVVSWNAMV--TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYA 326 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-d~~~~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 326 (834)
+ +.+.+.+|+++...|... +...-..-+ ......+++..+..+.++....| +..+.+...-...
T Consensus 89 Y----------~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 89 Y----------KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred H----------HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 1 455677777777766642 221111111 12335667777777777766432 4444444444555
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCC
Q 003273 327 QRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKS 406 (834)
Q Consensus 327 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 406 (834)
+.|++++|++-|+...+-| |+.|
T Consensus 156 kegqyEaAvqkFqaAlqvs----------------------------------------Gyqp----------------- 178 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVS----------------------------------------GYQP----------------- 178 (459)
T ss_pred ccccHHHHHHHHHHHHhhc----------------------------------------CCCc-----------------
Confidence 6677777777776665532 1111
Q ss_pred hHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCc-------------CCcccHHHHHHHHhh
Q 003273 407 VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK-------------PNAFTLSCALMACAR 473 (834)
Q Consensus 407 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~-------------p~~~t~~~ll~a~~~ 473 (834)
...||.-+ +..+.|+++.|+++..++++ +|++ ||.....
T Consensus 179 -----------------llAYniAL-aHy~~~qyasALk~iSEIie--RG~r~HPElgIGm~tegiDvrsvg-------- 230 (459)
T KOG4340|consen 179 -----------------LLAYNLAL-AHYSSRQYASALKHISEIIE--RGIRQHPELGIGMTTEGIDVRSVG-------- 230 (459)
T ss_pred -----------------hhHHHHHH-HHHhhhhHHHHHHHHHHHHH--hhhhcCCccCccceeccCchhccc--------
Confidence 11122111 12223333333333333333 2221 1111100
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
....+|.. .-...+|.-...+.+.|+.+.|.+.+-.|+ +.|++|...+.-.- ..+++.+..
T Consensus 231 -----Nt~~lh~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 231 -----NTLVLHQS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred -----chHHHHHH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccH
Confidence 00011110 112233444455778899999999999998 34777766653222 245555566
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHhh-cCCHHHHHHHHHhC
Q 003273 549 WAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI-SARAEHYACIVDLLGR-ANRLDEAVELIEGM 625 (834)
Q Consensus 549 ~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 625 (834)
+-++-+++ +.| ...||..++-.|++...++.|-.++.+-..- .. -.+...|+ +++++.- .-..++|.+-++..
T Consensus 297 ~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 297 EKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 66666666 455 3789999999999999999988887532210 00 01223333 4454443 34677777666554
Q ss_pred CCCCCHHHHHHHHHH--HHhcCc---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 626 PMEPTPIIWVALLNG--CRIHAN---VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 626 ~~~p~~~~~~~ll~~--~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...-....-..-+.. -+.+++ ...+.+-++..+++- -.+....+++|-+..++.-+.++|..-.+
T Consensus 373 a~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 373 AGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 211000011111111 112221 122333444444442 12456677888888899999988876554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-05 Score=84.30 Aligned_cols=300 Identities=11% Similarity=-0.053 Sum_probs=186.8
Q ss_pred hhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-Cccc---hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVAT---WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 390 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
....+..+...|...|+.+++.+.+.......+ +... .......+...|++++|.+++++..+ ..|+.....
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~ 80 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLAL 80 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHH
Confidence 344556666777777888887776666543332 2222 22223456778999999999999887 456544221
Q ss_pred HHHHHHhh----hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 003273 466 CALMACAR----LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGY 538 (834)
Q Consensus 466 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 538 (834)
.+...+.. .+....+.+.... .....+........+...+...|++++|...+++.. ..+...+..+...|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 11112222 3344444444433 112221334455566778999999999999999887 34566788888999
Q ss_pred HHcCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHhhc
Q 003273 539 GMHGLGDKAHWAFDQMRKEGL-APDG--VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHY-A--CIVDLLGRA 612 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~l~~~~~~~ 612 (834)
...|++++|...+++...... .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 999999999999999887422 1232 235567788999999999999999875321111222111 1 233334444
Q ss_pred CCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHH
Q 003273 613 NRLDEAVEL---IEG---M-PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE---------KDGSYTLLSNIYA 676 (834)
Q Consensus 613 g~~~~A~~~---~~~---~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~ 676 (834)
|..+.+..+ ... . +.............++...|+.+.|...++.+....-. ........+.++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 533333322 211 1 11111222334555678889999999998887663211 2456678888899
Q ss_pred hcCCchhHHHHHHHHHhcC
Q 003273 677 NAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~~ 695 (834)
..|++++|.+.+......+
T Consensus 319 ~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 319 AEGNYATALELLGPVRDDL 337 (355)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 9999999999998887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-05 Score=81.17 Aligned_cols=251 Identities=13% Similarity=0.072 Sum_probs=159.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhh
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~ 474 (834)
..|.++.-+..+++.|.+-++.......+..-++....+|...|.+.+....-....+ .|
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E--~g------------------ 287 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVE--VG------------------ 287 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHH--Hh------------------
Confidence 4456666667777777777777664443334445556667777777666655554443 11
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNVVSWTSLMTGYGMHGLGDKAHWAFD 552 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~ 552 (834)
.+...... .-......+...|.+.++++.|...|.+... ++... ..+....++++....
T Consensus 288 ------re~rad~k------lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 288 ------RELRADYK------LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAE 348 (539)
T ss_pred ------HHHHHHHH------HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHH
Confidence 11110000 0001112245578888999999999988652 22111 223344566666666
Q ss_pred HHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003273 553 QMRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT 630 (834)
Q Consensus 553 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 630 (834)
...- +.|.. .-.-.-...+.+.|++..|...|.++++. -+-|...|....-+|.+.|.+.+|++-.+.. ...|+
T Consensus 349 ~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 349 RKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 5554 55653 22333466788899999999999998863 2456788999999999999999988876655 33444
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 631 -PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 631 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
...|.--..++....+++.|.+.|+..++.+|++......+..++.....-+...++.
T Consensus 425 ~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 425 FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 3355555556667778999999999999999998888877777776543333333333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00086 Score=81.92 Aligned_cols=371 Identities=11% Similarity=0.005 Sum_probs=203.9
Q ss_pred HHHHHHhCCChhHHHHHHHhcCCCCCCCcch--HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhcc
Q 003273 176 LMAMYARCDTLSYARQLFDEMFQPGICDIVS--WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASL 253 (834)
Q Consensus 176 Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~ 253 (834)
....|...|++.+|.......... +... ...........|+++.+..++..+... ....+..........+.
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~-- 420 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQ-- 420 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHH--
Confidence 344456667777766665554332 1111 111223345567777777777666322 11111111111111122
Q ss_pred CCchhhhhcCcHHHHHHHHHhcC----CC----C----hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCe----ee
Q 003273 254 GTWSRGKQCGMMEEAKKVFERMK----VK----D----VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV----VT 317 (834)
Q Consensus 254 ~~~~~~~~~g~~~~A~~~~~~~~----~~----d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~ 317 (834)
..|++++|...+.... .. + ......+...+...|++++|...+++....-...+. ..
T Consensus 421 -------~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 421 -------SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred -------HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3455666655554331 11 1 112223344566899999999999987653111121 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--CHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCC-CChh
Q 003273 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLE---P--NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDL 391 (834)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 391 (834)
++.+...+...|++++|...+++.....-. + ...++..+...+...|+++.|...+.............. +...
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455666778899999999999888753111 1 122344455567788999999998888776532211111 1123
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCC----CC--CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPK----NR--DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
..+..+...+...|++++|...+++.... .+ ....+..+...+...|++++|.+.+.+... +.+......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~----~~~~~~~~~ 649 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN----LLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHhcccccH
Confidence 34555666777789999998888775421 11 122333445566677888888877777643 100000000
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh-------hHHHHHHHHH
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNV-------VSWTSLMTGY 538 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~ 538 (834)
. ............+...|+.+.|...+.....+.. ..+..+..++
T Consensus 650 ~----------------------------~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 650 D----------------------------WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred h----------------------------HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 0 0000001112334557788888887766553221 1134455667
Q ss_pred HHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 539 GMHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888887653 22222 34455666677788888888888887764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=90.66 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=167.9
Q ss_pred hhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCC
Q 003273 361 ASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGG 439 (834)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~ 439 (834)
.+.|++..|.-.++.+++ ..|.+...|.-|...-+..++-..|+..+.+..+.+| |....-+|...|...|.
T Consensus 296 m~nG~L~~A~LafEAAVk-------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVK-------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HhcCCchHHHHHHHHHHh-------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 355777777777887777 5688899999999999999999999999999887676 56778888889999999
Q ss_pred hhHHHHHHHhhcccCC---CCcC---CcccHHHHHHHHhhhhhHHHHHHHHHHH-HHhCCCccchhHHhHHHHHHHhcCC
Q 003273 440 ANDALALFPQMFQQDK---LVKP---NAFTLSCALMACARLAALRFGRQIHAYV-LRNQYEMLIPFVANCLIDMYSRSGD 512 (834)
Q Consensus 440 ~~~A~~l~~~m~~~~~---g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~li~~y~k~g~ 512 (834)
-.+|+..|+.-+...- ...+ +..+-.. ........+....++|-.+ ...+.. .++.++..|.-.|--.|+
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~-~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTK-IDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCC-CChhHHhhhHHHHhcchH
Confidence 9999999998865110 0000 1100000 1222333444444444444 445554 889999999999999999
Q ss_pred HHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 513 IDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 513 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
++.|.+.|+... +| |...||-|...++...+.++|+..|++.++ ++|+ ......|.-+|...|.+++|.+.|-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999887 44 778999999999999999999999999999 8999 55666778889999999999998875
Q ss_pred hH
Q 003273 589 MS 590 (834)
Q Consensus 589 m~ 590 (834)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 54
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-06 Score=85.94 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=84.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCC
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS----HSGM 578 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 578 (834)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchh
Confidence 334566678888887777765 4455555566777778888888888888776 3344 22333333322 2335
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcH-HHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANV-ELGELAAN 655 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~ 655 (834)
+.+|..+|+++.. ...+++...+.+.-+....|++++|.+++++. ...| ++.++-.++..+...|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 6777777777654 23445555566666666666666666655553 2122 233444454444444544 44555555
Q ss_pred HHHhcCCC
Q 003273 656 RLLELESE 663 (834)
Q Consensus 656 ~~~~~~p~ 663 (834)
++....|+
T Consensus 261 qL~~~~p~ 268 (290)
T PF04733_consen 261 QLKQSNPN 268 (290)
T ss_dssp HCHHHTTT
T ss_pred HHHHhCCC
Confidence 55555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00012 Score=76.66 Aligned_cols=213 Identities=12% Similarity=-0.004 Sum_probs=134.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh----------HHHHHHH
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVV----------SWTSLMT 536 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~----------~~~~li~ 536 (834)
+.++..+..+++.+.+-+....... .+...++....+|...|.+.+....-+...+..-. ....+..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3344444455556666555555543 34444555666666666666555544443321111 1122333
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCH
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE-HYACIVDLLGRANRL 615 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~ 615 (834)
+|.+.++++.|+..|++.+.....||.. .+....+++....+... -+.|... -.-.=...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 5555666777777777765544444322 12222333333333221 2334321 111226677889999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 616 DEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 616 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.+|+..+.++ ...| |...|.....+|.+.|++..|..-++..++++|+....|.--+-++....+|++|.+.+....+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887 2334 5778888888899999999999999999999999999999999999999999999999988776
Q ss_pred c
Q 003273 694 T 694 (834)
Q Consensus 694 ~ 694 (834)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 4
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00012 Score=78.49 Aligned_cols=64 Identities=14% Similarity=-0.098 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee---HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT---WSAVIAGYAQRGHGHEALDVFRQMQFC 344 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 344 (834)
...|..+...+...|+.+++...+......... +... .......+...|++++|.+++++..+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-RATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666677777776666665544221 2222 122233556678888888888877664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-06 Score=94.64 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=168.0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--------RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTF 566 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 566 (834)
.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...++|+++.+ +.-.-..|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHH
Confidence 5666777788888899999999999998872 1245799999999999999999999999988 33334558
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT---PIIWVALLNGCR 642 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~ 642 (834)
..|...|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-++|..++.++ ..-|. .....-....-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999999877 56678999999999999999999999876 22232 334444444557
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 643 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
++||.+.|..+++-++.-.|.....|..++++-.+.|..+.++.+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999999887654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=77.16 Aligned_cols=122 Identities=9% Similarity=0.014 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003273 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-P 626 (834)
Q Consensus 549 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 626 (834)
.+|++.++ +.|+. +..+..++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45553 4445666777777777777777765 3334 4666777777777778888888777776 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 627 MEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 627 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 233 566788888888888888888888888888888888888777776543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-08 Score=61.72 Aligned_cols=34 Identities=32% Similarity=0.678 Sum_probs=26.0
Q ss_pred cCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003273 309 ENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342 (834)
Q Consensus 309 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 342 (834)
+|+.||.+|||+||.+|++.|+.++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677788888888888888888888888877773
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-05 Score=80.54 Aligned_cols=180 Identities=12% Similarity=0.013 Sum_probs=109.5
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN-V---VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV---- 564 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 564 (834)
..+..+..+...|.+.|++++|...|+++. .|+ . ..|..+...+...|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 344455566666667777777777776654 222 1 2455566666677777777777777766 344311
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 003273 565 TFLVLLYACSHS--------GMVDQGLKYFDSMSKEFGISARAE-HYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV 635 (834)
Q Consensus 565 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 635 (834)
++..+..++... |++++|.+.|+.+.+. .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444444443 5566666666666532 23221 11111100 0000000 00112
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 636 ALLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+...+...|+.+.|...++++++..|+++ .++..++.+|...|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445567888999999999999999977654 68899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-07 Score=59.86 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHHhcC
Q 003273 165 GFDSNVFVCNALMAMYARCDTLSYARQLFDEMF 197 (834)
Q Consensus 165 g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 197 (834)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667788888888888888888888888887774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=86.51 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~ 471 (834)
.+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...|. +..
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD~-~l~------ 167 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDEDS-ILT------ 167 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCCH-HHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcH-HHH------
Confidence 33334445566677777777766543 3445555667777778888888888877765 22222 111
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 003273 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 472 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
.+..+.+..+.-.+.+++|..+|+++.+ +++.+.|.+..++.+.|++++|.
T Consensus 168 --------------------------qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 168 --------------------------QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp --------------------------HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred --------------------------HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 1223344444444567888888887763 45667777777888888888888
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH-HHHHHHHHHhHH
Q 003273 549 WAFDQMRKEGLAPD-GVTFLVLLYACSHSGMV-DQGLKYFDSMSK 591 (834)
Q Consensus 549 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~ 591 (834)
+++.+..+ ..|+ +.|+..++.+....|+. +.+.+++..+..
T Consensus 222 ~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 222 ELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88888765 4454 67777777777777777 667777777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00044 Score=68.00 Aligned_cols=381 Identities=13% Similarity=0.059 Sum_probs=218.5
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHH
Q 003273 169 NVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALS 248 (834)
Q Consensus 169 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~ 248 (834)
++.-.--|...+...|++.+|+.-|....+.++.+-.++.--...|...|+..-|+.=+.+.. ..+||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~------ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMA------ 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHH------
Confidence 333344566677778999999999999888833333333334567888888888887777776 34555221
Q ss_pred HhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc
Q 003273 249 ACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328 (834)
Q Consensus 249 a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 328 (834)
+-. --...+.+.|.+++|..=|+...+..+. . +....++.+.
T Consensus 108 ARi---------------------------------QRg~vllK~Gele~A~~DF~~vl~~~~s--~---~~~~eaqskl 149 (504)
T KOG0624|consen 108 ARI---------------------------------QRGVVLLKQGELEQAEADFDQVLQHEPS--N---GLVLEAQSKL 149 (504)
T ss_pred HHH---------------------------------HhchhhhhcccHHHHHHHHHHHHhcCCC--c---chhHHHHHHH
Confidence 100 0112345667777777777776665321 1 1111111111
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChH
Q 003273 329 GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVD 408 (834)
Q Consensus 329 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 408 (834)
-..++-.. ....+..+...|+...+......+++ -.+-|...+..-..+|...|.+.
T Consensus 150 ~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llE-------i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 150 ALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLE-------IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred HhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHh-------cCcchhHHHHHHHHHHHhcCcHH
Confidence 11111111 11222223334455555555555444 45667778888888999999999
Q ss_pred HHHHHHHhcCCCC-CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKN-RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 487 (834)
.|+.-++...... .++.+.-.+-..+...|+.+.++...++.++ +.||....-.. | ..+......+..+
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~---Y---KklkKv~K~les~ 276 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPF---Y---KKLKKVVKSLESA 276 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHH---H---HHHHHHHHHHHHH
Confidence 9988777765433 4566677777788889999999999999887 77876432110 1 1111111111111
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC--hh---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN--VV---SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA 560 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~--~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 560 (834)
......+++.++.+..+... +|. .+ .+..+-.++...|++.+|++...+.++ +.
T Consensus 277 -----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d 337 (504)
T KOG0624|consen 277 -----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--ID 337 (504)
T ss_pred -----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cC
Confidence 11223455555555555544 232 22 233445566778889999999999888 77
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003273 561 PD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLN 639 (834)
Q Consensus 561 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 639 (834)
|| ..++.--..||.-...++.|++-|+...+ ..++-.- .|.| ++.|..+-+... +.| |.-+++
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e---~n~sn~~--------~reG-le~Akrlkkqs~-kRD---YYKILG 401 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE---LNESNTR--------AREG-LERAKRLKKQSG-KRD---YYKILG 401 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcccHH--------HHHH-HHHHHHHHHHhc-cch---HHHHhh
Confidence 87 77788888888888889999998888763 3333211 1111 345555554443 223 223333
Q ss_pred HHHhcCcHHHHHHHHHHHH-hcCCCCC
Q 003273 640 GCRIHANVELGELAANRLL-ELESEKD 665 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~-~~~p~~~ 665 (834)
.- ++.+-.+-.++|+++- +-+|+|.
T Consensus 402 Vk-RnAsKqEI~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 402 VK-RNASKQEITKAYRKLAQKWHPDNF 427 (504)
T ss_pred hc-ccccHHHHHHHHHHHHHhcCCccc
Confidence 33 3333445566666654 4578764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-05 Score=79.60 Aligned_cols=204 Identities=12% Similarity=0.091 Sum_probs=133.7
Q ss_pred HHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC
Q 003273 432 GSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG 511 (834)
Q Consensus 432 ~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g 511 (834)
..+...++.++|+.+..++++ +.|+..| +++.-..++.+.|
T Consensus 45 a~l~~~e~serAL~lt~~aI~----lnP~~yt-----------------------------------aW~~R~~iL~~L~ 85 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIR----LNPGNYT-----------------------------------VWHFRRLCLEALD 85 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHH----HCchhHH-----------------------------------HHHHHHHHHHHcc
Confidence 334556677788888887776 5565443 2233333333445
Q ss_pred -CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 003273 512 -DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG--DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 512 -~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
++++++..++++. .++...|+.....+.+.|+. ++++.+++++++ ..|. ..+|.....++.+.|+++++++
T Consensus 86 ~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 86 ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 4677777776665 33555676655555555553 567888888877 5564 6777777777778888888888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CcHHHHH
Q 003273 585 YFDSMSKEFGISARAEHYACIVDLLGRA---NR----LDEAVELIEGM-PMEP-TPIIWVALLNGCRIH----ANVELGE 651 (834)
Q Consensus 585 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~ 651 (834)
.++.+++. -.-+...|+....++.+. |. .++++++..++ ...| |...|+-+.+.+... ++...+.
T Consensus 164 ~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 88888753 122344555555554443 22 24566666444 3344 577899888888774 3446688
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 652 LAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..+.++++.+|+++.+...|+++|+..
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 889999999999999999999999864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00038 Score=84.95 Aligned_cols=377 Identities=10% Similarity=-0.015 Sum_probs=191.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 363 (834)
......|...|++.+|............ -..............|+++.+...+..+.......+..........+...
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 3444456666676666654444321100 00001111223445666666666665542111111111122222233455
Q ss_pred chhhhhhHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC--C----ccchHHHHHHHH
Q 003273 364 GALLLGKETHCYTIKRVLSVDGSHPD--DLMVINALIDMYAKCKSVDVARVMFDAIAPKNR--D----VATWTVMIGSYS 435 (834)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~----~~~~~~li~~~~ 435 (834)
|+.+.+......+.......+...++ .......+...+...|++++|...+++.....+ + ...++.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 66666666666554431110000011 112222334556678888888888877543111 1 123445555666
Q ss_pred hcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHH
Q 003273 436 QNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDT 515 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 515 (834)
..|++++|...+.+... ..-.. |...........+...+...|++++
T Consensus 503 ~~G~~~~A~~~~~~al~--~~~~~-------------------------------g~~~~~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 503 CKGELARALAMMQQTEQ--MARQH-------------------------------DVYHYALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred HcCCHHHHHHHHHHHHH--HHhhh-------------------------------cchHHHHHHHHHHHHHHHHCCCHHH
Confidence 77888888887777654 10000 0000111223344555566666666
Q ss_pred HHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC--hhHHHHHHHHHHhcCCHH
Q 003273 516 ARVVFDNLKQ-------R----NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG--LAPD--GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 516 A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~ 580 (834)
|...+++... + ....+..+...+...|++++|...+++..... ..|. ..++..+.......|+++
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 629 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD 629 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence 6666554431 1 11223344445556678888877777765421 1122 233444555666778888
Q ss_pred HHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCcHHH
Q 003273 581 QGLKYFDSMSKEFGISARAEHY-----ACIVDLLGRANRLDEAVELIEGMPME--PTP----IIWVALLNGCRIHANVEL 649 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~ 649 (834)
+|...++.+..-.........+ ......+...|+.++|.+++...... ... ..+..+..++...|+.++
T Consensus 630 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 630 NARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 8887777664321111111111 11123445578888888887665311 111 113345555677788888
Q ss_pred HHHHHHHHHhcCC------CCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 650 GELAANRLLELES------EKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 650 a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
|...++++++... +...++..++.+|...|+.++|...+.+..+..
T Consensus 710 A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 710 AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888776521 122466778888888888888888888877643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-06 Score=72.76 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
+.+..-.+...+...|++++|.++|+-. ...| +..-|..|...|...|+++.|+.+|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555666777788899999999999877 3344 5678999999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 003273 676 ANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739 (834)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~ 739 (834)
...|+.+.|++-|+...... ..+|+-.++..+.+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999887532 146777777666666655553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=86.58 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=176.3
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
.++|-...-..+...+.++|-...|..+|+++. .|...|.+|+..|+..+|..+..+-.+ -+||..-|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le----k~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE----KDPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc----CCCcchhHH
Confidence 566777777889999999999999999999875 688899999999999999999988876 578888898
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHG 542 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 542 (834)
.+.+..-+..-++.|.++.++.... ....+.......++++++.+.|+.-.+ --..+|-....+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 8888888888888888887765432 112222223346889999999987653 24568888888889999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 543 LGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 543 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
+++.|.+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+ ++ .-+...|...+-...+.|.+++|++.
T Consensus 534 k~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 99999999999888 7888 67799999999999999999999998875 34 44555677777778889999999999
Q ss_pred HHhC
Q 003273 622 IEGM 625 (834)
Q Consensus 622 ~~~~ 625 (834)
+.++
T Consensus 610 ~~rl 613 (777)
T KOG1128|consen 610 YHRL 613 (777)
T ss_pred HHHH
Confidence 8877
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=72.92 Aligned_cols=100 Identities=8% Similarity=-0.107 Sum_probs=88.3
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHH
Q 003273 594 GISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671 (834)
Q Consensus 594 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 671 (834)
.+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|+++.|...++++++++|+++.++..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34455 3667888999999999999999987 3334 677999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcC
Q 003273 672 SNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 672 ~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+.+|...|++++|...++...+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-05 Score=75.17 Aligned_cols=118 Identities=10% Similarity=0.089 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCc--HHHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNG-CRIHAN--VELG 650 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 650 (834)
.++.+++...++...+ .-+.+.+.|..+...|...|++++|...+++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666665543 23345667777777777777777777777766 2334 46677777766 356666 5899
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.++++++++.+|+++.++..|+..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-05 Score=83.69 Aligned_cols=186 Identities=18% Similarity=0.175 Sum_probs=153.6
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
+-......+.+.+.++|-..+|..+|++. ..|...|-+|...|+..+|..+..+-.+ -+||+.-|..++...-
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 55556677889999999999999999875 5788889999999999999999998887 5788999999999988
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGEL 652 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 652 (834)
....+++|+++++....+ .-..+.....+.++++++.+.++.. .+.| ...+|-.+..+..+.++.+.|.+
T Consensus 469 d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 888899999998865432 1112223334578999999988764 4444 35688888888888899999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 653 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+|.+...++|++...+++++-+|.+.|+..+|...+++..+-.
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999998887654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00026 Score=81.25 Aligned_cols=244 Identities=12% Similarity=0.062 Sum_probs=165.3
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc-chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA-TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
-.+.+...+..|+..|...+++++|.++.+......|+.. .|-.+...|.+.++.+++..+ .+.. ..++..-+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~----~~~~~~~~ 99 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID----SFSQNLKW 99 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh----hcccccch
Confidence 3456777889999999999999999999998776667544 444445567777777777666 4432 22322222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMH 541 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 541 (834)
..+-.. ...+...+ .+..++..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+..
T Consensus 100 ~~ve~~-------------~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 100 AIVEHI-------------CDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hHHHHH-------------HHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 222222 22333322 4445667788888888999999888888873 4677788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
+.++|.+++.+.+.. +...+++.++.++|..+.. ...-+.+.+..+.......
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~--------- 216 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH--------- 216 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh---------
Confidence 888888888887763 5556678888888888763 2222333333332222111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 622 IEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 622 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
.....-..+|--|-..|...++++.+..+++.+++.+|.|..+..-++..|. +++.+
T Consensus 217 ---~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 217 ---REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred ---hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 1122334456666677888889999999999999999999988888888887 55554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.8e-05 Score=84.39 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=108.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 003273 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYA 603 (834)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 603 (834)
.++..+-.|.....+.|..++|..+++...+ +.|| ......+..++.+.+++++|....+.... ..| +..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3466777778888888999999999999888 7887 56677788888889999999988888763 344 466777
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 604 CIVDLLGRANRLDEAVELIEGMP-MEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
.+..++.+.|++++|.++|++.- ..|+ ...|.++..++...|+.+.|..+|+++++...+-...|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 88888888999999999998873 2344 67888888888888999999999999888865444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-05 Score=74.45 Aligned_cols=182 Identities=14% Similarity=-0.010 Sum_probs=126.7
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc-cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC-hh---HHHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEM-LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN-VV---SWTS 533 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~---~~~~ 533 (834)
...+......+...|+++.|...+..+.+..... .....+..+...|.+.|++++|...|+++. .|+ .. .|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3456666777888999999999999998865421 122466788899999999999999999987 232 22 4555
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003273 534 LMTGYGMH--------GLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604 (834)
Q Consensus 534 li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 604 (834)
+..++.+. |+.++|.+.|+++.+ ..|+.. ....+..... ... .. ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHHH
Confidence 66666654 788999999999998 567643 2222211100 000 00 011235
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 605 IVDLLGRANRLDEAVELIEGM----PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 677788999999999988876 2223 2468888899999999999999988888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00017 Score=83.23 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC 471 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~ 471 (834)
.+|.+++++-...|.-+...++|+++.+.......|..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHH
Confidence 35666666666666666677777776532223445666777777777777777777777752 333445566666666
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHH
Q 003273 472 ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 472 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
.+...-+.|+.++..+.+.-.......+..-.+.+-.++|+.+.++.+|+... .+-...|+..|..-.++|+.+.+.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHH
Confidence 66666677777777766644322345566677788889999999999999887 235678999999999999999999
Q ss_pred HHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCH
Q 003273 549 WAFDQMRKEGLAPD--GVTFLVLLYACSHSGMV 579 (834)
Q Consensus 549 ~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~ 579 (834)
.+|++.+..++.|- ...|.-.|.--...|+-
T Consensus 1655 ~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 99999999988885 34455555444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00068 Score=70.50 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=34.9
Q ss_pred CCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhc
Q 003273 386 SHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMF 451 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 451 (834)
..|.|++......+.+.+.++..+|.+.|+.+....|+ ...+-.+..+|.+.|++.+|+.+++...
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 34444555555555555556666665555555544443 3344444555555555555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.6e-05 Score=70.80 Aligned_cols=126 Identities=16% Similarity=0.048 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIH 644 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~ 644 (834)
..+-.++...|+-+....+...... ....+.......+....+.|++.+|...+.+. +.++|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4455556666666666666555432 22333444555667777777777777777766 3345666777777777777
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|+.+.|...|.+++++.|+++.+++.|+..|.-.|+.++|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=69.90 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=114.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 582 (834)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++.++ ..|+ ...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888877655544332221 012235667888888888888 5665 77788888999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003273 583 LKYFDSMSKEFGISA-RAEHYACIVDLL-GRANR--LDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANR 656 (834)
Q Consensus 583 ~~~~~~m~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 656 (834)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998873 445 577788888864 67777 59999999988 3344 567888888889999999999999999
Q ss_pred HHhcCCCCCchH
Q 003273 657 LLELESEKDGSY 668 (834)
Q Consensus 657 ~~~~~p~~~~~~ 668 (834)
++++.|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999988765444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00044 Score=71.41 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-ChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCCh--hHHHH
Q 003273 149 PSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDA--EGGLM 225 (834)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A~~ 225 (834)
+..+.|..+.+.+++.. +.+..+|+..-.++.+.| ++++++..++++...++.+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 44556666666666543 333445555555555556 467777777777666555666677655555544442 34455
Q ss_pred HHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHH
Q 003273 226 LFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKK 305 (834)
Q Consensus 226 ~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 305 (834)
+++++.+. ...|..+|+.....+.+.|+++++++.+++
T Consensus 130 ~~~kal~~------------------------------------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 130 FTRKILSL------------------------------------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HHHHHHHh------------------------------------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55444422 135677788888888888888999999999
Q ss_pred hHhcCCCCCeeeHHHHHHHHHhc
Q 003273 306 MRQENVKLNVVTWSAVIAGYAQR 328 (834)
Q Consensus 306 m~~~g~~p~~~~~~~li~~~~~~ 328 (834)
+.+.++. |..+|+.....+.+.
T Consensus 168 ~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 168 LLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHCCC-chhHHHHHHHHHHhc
Confidence 8888777 777787776655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00021 Score=68.30 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=82.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 613 (834)
-..+...|+.+..+.+..+... ..| |......++......|++.+|...+.+... .-++|.+.|+.+.-+|.+.|
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 3444445555555544444332 122 222333345555555555555555555542 33445555555555555555
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 614 RLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 614 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
++++|..-|.+. ...| ++...++|...+...||.+.|+..+.......+.|+.+-..|+-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555444 2222 34556666666666666666666666666666666666666666666677766666553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00033 Score=72.72 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=53.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGEL 652 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 652 (834)
..|.+++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34445555555554442 22233334444445555555555555555444 22333 3344444444555555555555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 003273 653 AANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 653 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.+...+.-+|+|+..|..|+.+|...|+..++...+.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 5555555555555555555555554444444444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.9e-06 Score=53.14 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG 563 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 563 (834)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=9e-06 Score=53.12 Aligned_cols=33 Identities=36% Similarity=0.719 Sum_probs=22.1
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003273 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPN 349 (834)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 349 (834)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00034 Score=79.69 Aligned_cols=141 Identities=10% Similarity=0.057 Sum_probs=111.6
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 570 (834)
.++..+-.|.......|++++|+.+++... .|| ...+..+...+.+.+++++|+..+++... ..|+. .....+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 557777888888889999999999999887 454 55777888899999999999999999998 67874 4566666
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLN 639 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 639 (834)
.++.+.|++++|..+|+++.. ...-+...+..+..++.+.|+.++|...|++. ...|....|+.++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 688899999999999999875 22334678888999999999999999999887 23355555555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.8e-05 Score=67.09 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
......++..+...|++++|.+.++.. ...| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777777777777777765 2233 56677777778888888888888888888888888888888999999
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999888877664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=75.99 Aligned_cols=148 Identities=9% Similarity=0.086 Sum_probs=83.1
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 278 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+...|..|+..|...+++++|.++.+...+..+. ....|-.+...+.+.++..++..+ .+... .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~------- 96 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDS--FSQN------- 96 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccc-------
Confidence 46778999999999999999999999977766443 445555555677788877766655 33221 1111
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHh
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQ 436 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~ 436 (834)
.++.....+...+. ....+......|..+|-+.|+.++|..+++++....| |+...|.+...|..
T Consensus 97 ------~~~~~ve~~~~~i~--------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 97 ------LKWAIVEHICDKIL--------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred ------cchhHHHHHHHHHH--------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 11111111111111 1122233445555555555666666666655554443 44555555555555
Q ss_pred cCChhHHHHHHHhhcc
Q 003273 437 NGGANDALALFPQMFQ 452 (834)
Q Consensus 437 ~g~~~~A~~l~~~m~~ 452 (834)
. +.++|++++.+...
T Consensus 163 ~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 163 E-DKEKAITYLKKAIY 177 (906)
T ss_pred h-hHHHHHHHHHHHHH
Confidence 5 55555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.005 Score=58.99 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCCH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS----HSGMV 579 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~ 579 (834)
...|.+.|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|.+ + -+..|.+.|..++. ..+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 34566666666666666653222222222 2233445556666666666665 1 23444444444433 23445
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-cHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHA-NVELGELAANR 656 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~ 656 (834)
.+|.-+|++|.+ ...|+..+.+.+..+....|++++|..++++.- ...++.+...++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 566666666643 244555555555555555555555555555441 1122333333333322222 33333444444
Q ss_pred HHhcCCC
Q 003273 657 LLELESE 663 (834)
Q Consensus 657 ~~~~~p~ 663 (834)
+...+|+
T Consensus 268 Lk~~~p~ 274 (299)
T KOG3081|consen 268 LKLSHPE 274 (299)
T ss_pred HHhcCCc
Confidence 5555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00025 Score=63.77 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=84.1
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM 627 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 627 (834)
.+++.+. ..|+ ......+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 5565 344566666778888888888888887642 2335677788888888888888888888776 23
Q ss_pred CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 628 EP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 628 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 4667777888888899999999999999999997655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.004 Score=59.15 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=119.2
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC--CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLKQ--RN---VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
+..++-+...+|+.+.|...++.+.. |. +.-..+| -+-..|++++|+++++..++.. +.|.+++--=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 34445555567888888888777652 22 2222222 2445789999999999999853 335777777676777
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---cHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHA---NVEL 649 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~ 649 (834)
..|..-+|++-+....+ .+.-|.+.|.-+.++|...|+++.|.-.++++ -..| ++..+..+...+...| |.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888888888876 56678889999999999999999999999988 2334 4556666666644443 7889
Q ss_pred HHHHHHHHHhcCCCCCchHH
Q 003273 650 GELAANRLLELESEKDGSYT 669 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~ 669 (834)
+.+.|++.+++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 99999999999997655443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.3e-05 Score=49.97 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP 561 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 561 (834)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00029 Score=74.09 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH 644 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 644 (834)
.+|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 44555566677777777777777643 244 3444666676777777777777666 2223 555666666668899
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
++.+.|..+++++.++.|++..+|..|+.+|...|++++|....+.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.6e-05 Score=50.45 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=17.6
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003273 316 VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 348 (834)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0013 Score=69.33 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=104.8
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS 574 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 574 (834)
+-.+..+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++ ..|+ ...+..-...|.
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLL 245 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3344456777777889999999999999976666667788888888999999999999997 4554 555555566688
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGMPMEP 629 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 629 (834)
..++++.|+++.+++. .+.|+ ..+|..|+.+|.+.|++++|+..++.+|..+
T Consensus 246 ~k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 246 SKKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred hcCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999987 45665 5699999999999999999999999998543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=71.18 Aligned_cols=267 Identities=11% Similarity=-0.017 Sum_probs=153.2
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc-ccHHHHHHHHhhhh
Q 003273 398 IDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA-FTLSCALMACARLA 475 (834)
Q Consensus 398 i~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-~t~~~ll~a~~~~~ 475 (834)
...+.+...+.+|...+.......|| ..-|..-...|...|++++|+--.++-++ ++|.. .+..-.-+.+...+
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r----~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR----LKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee----cCCCccccccchhhhhhhhH
Confidence 34556666777777777776655564 45567777778888888888877776655 33322 23333334444444
Q ss_pred hHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHH-HHHHHcCChHHHHH
Q 003273 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLM-TGYGMHGLGDKAHW 549 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li-~~~~~~g~~~~A~~ 549 (834)
+..++.+.+..-. + + ....|+..++... +|-..+|..+- .++.-.|+.++|..
T Consensus 132 ~~i~A~~~~~~~~--------~--~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ--------A--Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHhhhhh--------h--h-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 4444444433100 0 0 0111111111111 12233343332 23445566666665
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH-------------HHHHHHHHHhhcCCH
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE-------------HYACIVDLLGRANRL 615 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------------~~~~l~~~~~~~g~~ 615 (834)
.--..++ ..++ ......-..++...++.+.|...|++.. .+.|+.. .+.-=.+...+.|++
T Consensus 191 ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 5555544 2222 2211111223444555666666665543 3344321 122223456678888
Q ss_pred HHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 003273 616 DEAVELIEGM-PME-----PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 616 ~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
.+|.+.+.+. .+. |++..|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++...++|++|.+-++
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776 333 4455666666667788888889988889999988878888888888888899999888887
Q ss_pred HHHhc
Q 003273 690 LMKHT 694 (834)
Q Consensus 690 ~m~~~ 694 (834)
...+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 77654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.13 Score=57.91 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=37.4
Q ss_pred HHHcCCCHHHHHHHHH-HhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003273 289 GYSRIGSFEDAFALFK-KMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCG 345 (834)
Q Consensus 289 ~~~~~g~~~~A~~l~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 345 (834)
.+-..|++++|++++. ..-+.-..-+...-|--+..+...+++.+..++-.++...|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3456778888888883 33333222234444456677777888888888888887766
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.16 Score=57.33 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCCchHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 003273 148 LPSSRCGSSVHAVICSSGFDSNV---FVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGL 224 (834)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~---~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 224 (834)
.+++..|.+..+.+.+. .|+. .++.+|. ..|.|+.++|..+++.....+..|..|...+-..|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34566666666666554 2332 2233332 357788888888888776665558888888888888888888888
Q ss_pred HHHHHhhhCCCCCCCccchHhHHHHhhc
Q 003273 225 MLFARMTGDVKVQGDGVSLVNALSACAS 252 (834)
Q Consensus 225 ~~~~~m~~~~~~~p~~~t~~~~l~a~~~ 252 (834)
.+|++.. +..|+......++.++.+
T Consensus 98 ~~Ye~~~---~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 98 HLYERAN---QKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHH---hhCCcHHHHHHHHHHHHH
Confidence 8888887 445665555666666653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0025 Score=60.52 Aligned_cols=181 Identities=11% Similarity=0.114 Sum_probs=135.7
Q ss_pred cCCHHHHHHHHhhcC--------CCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH-HHHhcCCH
Q 003273 510 SGDIDTARVVFDNLK--------QRNVV-SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY-ACSHSGMV 579 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~ 579 (834)
..+.++..+++..+. .++.. .|..++-+....|+.+.|...++++... + |.+.-...+=. -+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 357888888888776 23333 3455566667789999999999999885 3 66433222222 25567899
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|.++++.+.++ -+.|..++---+.++-..|+--+|++-+... .+..|...|.-|-..|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999864 2445666666677777788877888766654 24468899999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCC---chhHHHHHHHHHhc
Q 003273 658 LELESEKDGSYTLLSNIYANAGR---WKDVARIRSLMKHT 694 (834)
Q Consensus 658 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 694 (834)
+=+.|-++..+..|+.++.-.|- .+-|++++.+..+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887775 44566677666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.11 Score=55.08 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
+|-..++.-.+..-.+.|..+|.+..+.+..+ +.....+++.-+ .+++.+-|.++|+.=.+++|-.| .--.+.++.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p--~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSP--EYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHH
Confidence 56666776667777889999999999988888 455566666544 46788999999998777655444 445678889
Q ss_pred HhhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcC
Q 003273 609 LGRANRLDEAVELIEGMP---MEPT--PIIWVALLNGCRIHANVELGELAANRLLELESEKD----GSYTLLSNIYANAG 679 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g 679 (834)
+...++=..|..+|++.. ..|+ ..+|..+|..-..-||.+...++-++....-|.+. ..-..+.+.|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 999999999999999873 2333 46999999999999999999998888777655221 23456778888888
Q ss_pred CchhHHHHHHHH
Q 003273 680 RWKDVARIRSLM 691 (834)
Q Consensus 680 ~~~~a~~~~~~m 691 (834)
.+..-..-++.|
T Consensus 525 ~~~c~~~elk~l 536 (656)
T KOG1914|consen 525 LYPCSLDELKFL 536 (656)
T ss_pred cccccHHHHHhh
Confidence 887665555555
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00042 Score=57.33 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 679 (834)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|+.+.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877765 2233 34567777777788888888888888888888888888888888888889
Q ss_pred CchhHHHHHHHHHh
Q 003273 680 RWKDVARIRSLMKH 693 (834)
Q Consensus 680 ~~~~a~~~~~~m~~ 693 (834)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 98888888877654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=56.16 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CchhHHHHHHHHHhc
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG-RWKDVARIRSLMKHT 694 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 694 (834)
++.+|..+...+...|+++.|+..++++++++|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999999999999 799999999887653
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.002 Score=58.55 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=56.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHhhcCC
Q 003273 541 HGLGDKAHWAFDQMRKEGLAPDG----VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA--EHYACIVDLLGRANR 614 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~~~g~ 614 (834)
.++...+...++++... .|+. .....+...+...|++++|...|+..... ...|.. ...-.+...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555553 2221 22223334455566666666666655542 212211 123334555556666
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 615 LDEAVELIEGMPME-PTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 615 ~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
+++|+..++..+.. .....+..+...+...|+.+.|...|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666666554311 22334444555566666666666666554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.4e-05 Score=46.82 Aligned_cols=29 Identities=41% Similarity=0.736 Sum_probs=14.9
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003273 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCG 345 (834)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 345 (834)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00051 Score=66.99 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=64.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 649 (834)
..+.+++++|+..|...+ .+.|+ ...|..-..+|.+.|.++.|++-.+.. .+.|. ...|..|.-++...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 344556666666666555 34443 334444555666666666666666554 34454 3478888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
|+++|+++++++|++......|-.+=
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 88888888888888775555554443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.12 Score=52.59 Aligned_cols=275 Identities=17% Similarity=0.177 Sum_probs=182.0
Q ss_pred hCCChHHHHHHHHhcCCC-CCCccchHHHHHHH--HhcCChhHHHHHHHhhcccCCCCcCCc--ccHHHHHHHHhhhhhH
Q 003273 403 KCKSVDVARVMFDAIAPK-NRDVATWTVMIGSY--SQNGGANDALALFPQMFQQDKLVKPNA--FTLSCALMACARLAAL 477 (834)
Q Consensus 403 ~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~g~~p~~--~t~~~ll~a~~~~~~~ 477 (834)
-.|+-..|+++-.+..+. ..|....-.++.+- .-.|++++|.+-|+.|.. .|.. .-+..+.-..-+.|+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 346667777666554311 23433333344332 346899999999999986 2322 1223333344567888
Q ss_pred HHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHHH---cCChHHH
Q 003273 478 RFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVV--SWTSLMTGYGM---HGLGDKA 547 (834)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A 547 (834)
+.++++-...-..-. .-+....+.++..+..|+++.|+++.+.-. ++++. .-..|+.+-+. .-+...|
T Consensus 171 eaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 888888777655433 556778899999999999999999998665 45543 23334433221 2346667
Q ss_pred HHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH--H--HHH
Q 003273 548 HWAFDQMRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA--V--ELI 622 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~--~~~ 622 (834)
...-.+..+ +.||- ..-.....++.+.|++.++-.+++.+- ...|.+..+... .+.|.|+.... . +-+
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLY--VRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHH--HHhcCCCcHHHHHHHHHHH
Confidence 766666666 78884 445556678999999999999999886 456776655433 34455543221 1 122
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHh
Q 003273 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA-GRWKDVARIRSLMKH 693 (834)
Q Consensus 623 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 693 (834)
+.|. +.+..+..++..+-...|++..|....+.+..+.|. ...|.+|+++-... |+-.+++....+..+
T Consensus 322 ~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3343 234556777777888899999999999999999995 78899999987655 888888777766554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0038 Score=56.72 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=35.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
.+...|++++|...|+........|+ ......+...+...|++++|+..++... +-......+....++|.+.|+
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP---DEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHCCC
Confidence 34444555555555555544331111 1223333444444555555555543321 111222334444455555555
Q ss_pred HHHHHHHHH
Q 003273 615 LDEAVELIE 623 (834)
Q Consensus 615 ~~~A~~~~~ 623 (834)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555554444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.1e-05 Score=60.03 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 613 NRLDEAVELIEGM-PMEP---TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
|++++|+.+++++ ...| +...|..+..++...|+.+.|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555554 1112 344555566667777777777777777 6666666666667788888888888888777
Q ss_pred HH
Q 003273 689 SL 690 (834)
Q Consensus 689 ~~ 690 (834)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00087 Score=70.97 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=41.1
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 610 GRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
.+.|++++|++.|+++ ...| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444443 1122 2334444444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHh
Q 003273 688 RSLMKH 693 (834)
Q Consensus 688 ~~~m~~ 693 (834)
++...+
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.1e-05 Score=46.65 Aligned_cols=31 Identities=39% Similarity=0.676 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 559 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 559 (834)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.14 Score=52.89 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=96.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 580 (834)
+..+.-+...|+...|.++-.+..-||-..|-..+.+++..+++++-..+... +-.++-|...+.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566789999999999999889999999999999999999887765432 234588999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
+|..+...+. +..-+++|.++|++.+|.+..-+.. |...+..+..-|..+.
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~~~ 305 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPGNN 305 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCCCC
Confidence 9999887632 2557889999999999988866654 5555555555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=57.47 Aligned_cols=99 Identities=9% Similarity=0.073 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGC 641 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 641 (834)
.+...+...|++++|...|..+.+.+.-.| ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 333344444444445444444443211101 1223333444444555555555444443 11122 33455555556
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 642 RIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
...|+.+.|...++++++..|+++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0037 Score=69.14 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 525 QRNVVSWTSLMTGYGM--HG---LGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 525 ~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
..|...|...+.+... .+ ....|..+|++.++ ..|| ...+..+..++.... +..|.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~----------------~~~~~ 395 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRH----------------SQQPL 395 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHH----------------hcCCc
Confidence 4677888888887543 22 36789999999999 7888 455555433332110 11111
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM---P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
. .+++..+.+..++. + ...++..+.++.-.....|+.++|...++++++++| +..+|..++.+
T Consensus 396 ~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 D------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred c------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 0 01112222222221 1 122344555554455556677777777777777776 45667777777
Q ss_pred HHhcCCchhHHHHHHHHHhc
Q 003273 675 YANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 675 ~~~~g~~~~a~~~~~~m~~~ 694 (834)
|...|+.++|.+.+++....
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 77777777777766666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=57.56 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGMP-MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLL 671 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 671 (834)
..+...+..+.+.|++++|.+.++++. ..|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456678888999999999999998872 2233 3466678888999999999999999999998875 4678999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcC
Q 003273 672 SNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 672 ~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+.+|...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0039 Score=58.58 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYA 603 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 603 (834)
....+..+...+...|++++|+..|++.+.....|+ ...+..+...+.+.|++++|...+++..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777777888888888888888877433332 35677777788888888888888887764 233 355566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 604 CIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
.+..+|...|+...|..-++.. ....+.|.+.++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777665555333221 112567888999999999876 5556666655554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00039 Score=53.03 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=47.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+...+...|+++.|+..++++++..|+++.++..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778888888888888888888888888888899988889999888888888654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.059 Score=55.15 Aligned_cols=351 Identities=13% Similarity=0.038 Sum_probs=186.8
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHhhhhhch
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV-TLVSLLSGCASVGA 365 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~ 365 (834)
...+.+..++.+|+..+....+..+. ++.-|..-...+..-|++++|+--.+.-++. .|... +..-.-.++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34566677788888888888777665 5666777777777788888877666554432 11110 11122222222233
Q ss_pred hhhhhHHHHHHH--------HHh--hhcCCCCCChhhHHHHH-HHHHHhCCChHHHHHHHHhcCCCCCCccchHHHH--H
Q 003273 366 LLLGKETHCYTI--------KRV--LSVDGSHPDDLMVINAL-IDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMI--G 432 (834)
Q Consensus 366 ~~~a~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li--~ 432 (834)
...+.+.+.... ... .......+|....+-.| ..++.-.|+.++|.+.--.+.+.++ +-.+...+ .
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhccc
Confidence 333322221000 000 00000111222222222 3455667778877776655552221 11122222 2
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCC
Q 003273 433 SYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGD 512 (834)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 512 (834)
++--+++.+.|...|.+.+. ..|+....-++ ......+....+ =.+...+.|+
T Consensus 212 ~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~----------~~~~k~le~~k~-------------~gN~~fk~G~ 264 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR----LDPDHQKSKSA----------SMMPKKLEVKKE-------------RGNDAFKNGN 264 (486)
T ss_pred ccccccchHHHHHHHhhhhc----cChhhhhHHhH----------hhhHHHHHHHHh-------------hhhhHhhccc
Confidence 33456778888888888876 56665433211 111111122222 2344678899
Q ss_pred HHHHHHHHhhcCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 003273 513 IDTARVVFDNLKQ-------RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 513 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
+.+|.+.|.+... ++...|-.......+.|+.++|+.--++... +.|. ...+..-..++...+.|++|.+
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988872 3444566666777889999999998888876 5554 3344444456667788999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 585 YFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 585 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
.|+...+. ..+.++-..+ .+|..-+++.. ..-|-.+++.-+...+.+.....-..++..+|+-
T Consensus 343 d~~~a~q~---~~s~e~r~~l----------~~A~~aLkkSk----Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~ 405 (486)
T KOG0550|consen 343 DYEKAMQL---EKDCEIRRTL----------REAQLALKKSK----RKDWYKILGISRNASDDEIKKAYRKLALVHHPDK 405 (486)
T ss_pred HHHHHHhh---ccccchHHHH----------HHHHHHHHHhh----hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCc
Confidence 88877642 2222222222 23333333332 1234455555555555555555555567777763
Q ss_pred Cc--------hHHHHHHHHHhcCCchhHHHH
Q 003273 665 DG--------SYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 665 ~~--------~~~~l~~~~~~~g~~~~a~~~ 687 (834)
.. -+...+.+|...++..+..+.
T Consensus 406 ~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 406 NAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 22 233455555555555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=64.65 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=78.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
.+-+.+.+++++|+..|.+. .+.| |++.|..-..+|.+.|..+.|++.++.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999887 4444 677888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003273 684 VARIRSLMKHT 694 (834)
Q Consensus 684 a~~~~~~m~~~ 694 (834)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999887653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.039 Score=53.12 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=65.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003273 505 DMYSRSGDIDTARVVFDNLKQR-NVVSWTSLMTGYGM----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 579 (834)
..+.|..+++-|.+.++.|.+- +-.+.+.|..++.. .+...+|.-+|++|-+. ..|+..+.+....++...|++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3445556666777777777643 33345545544433 33466777777777654 567777777777777777777
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
++|..+++....+. .-++++...++-+-.-.|.-.+
T Consensus 224 eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 224 EEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChH
Confidence 77777777766432 2234455555554444554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=60.79 Aligned_cols=93 Identities=11% Similarity=-0.129 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888877766 12222 3478888888999999999999999999999998888888888
Q ss_pred HHH-------hcCCchhHHHHHHHH
Q 003273 674 IYA-------NAGRWKDVARIRSLM 691 (834)
Q Consensus 674 ~~~-------~~g~~~~a~~~~~~m 691 (834)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888766666544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0075 Score=57.47 Aligned_cols=193 Identities=9% Similarity=0.044 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHhhCCCchhHHHHhcccCCCCcchhhH--------HHHHHHHHhCCCchhHHHHH
Q 003273 52 QVYLIHQQIIVQNLTHVPPSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWW--------NALIRRAVRLRLPDNAFRLF 123 (834)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~ 123 (834)
..+-+|+.+.... ++++++|.+.|.-..-+++-...|+.-..+..++..| +.++..+.-.+.+.-..+++
T Consensus 123 smR~lhAe~~~~l--gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~ 200 (366)
T KOG2796|consen 123 SMRILHAELQQYL--GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAY 200 (366)
T ss_pred HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 3455676665542 3347778887776666666666666544433332344 55666777778899999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhCCChhHHHHHHHhcCC
Q 003273 124 LQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSG-----FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ 198 (834)
Q Consensus 124 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 198 (834)
.+.++..-+.++.....+.+.--+.||.+.|...++.+.+.. +..+..+.......|.-..++..|...|++++.
T Consensus 201 ~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 201 HSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred HHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 999987655666667777788889999999999999887653 233334444445566677899999999999999
Q ss_pred CCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 199 PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 199 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
.+..|.+.-|.-.-...-.|+..+|++....|.+ ..|...+-.+++-.
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHESVLFN 328 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhhhHHHH
Confidence 8877888877766667778999999999999984 46666665555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0077 Score=53.80 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=76.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSH 575 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 575 (834)
.-++..-+...|++++|.++|+-.. . .+..-|-.|..++-..|++++|+..|..... +.|| +.++-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHH
Confidence 3445556677899999999998776 3 3566888888888999999999999999988 5675 7788888889999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC
Q 003273 576 SGMVDQGLKYFDSMSKEFGISA 597 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p 597 (834)
.|+.+.|++.|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999998876544343
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=59.91 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEP---T-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
.+..+...|.+.|++++|...+++. ...| + ...|..+...+...|+.+.|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444445555555555555555544 1111 1 356777777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 003273 676 ANAGR 680 (834)
Q Consensus 676 ~~~g~ 680 (834)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.004 Score=65.95 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
..|++++|+.+|+.+++ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++.|+
T Consensus 14 ~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34444444444444432 122 2334444444444555555555544444 1223 3445666666666667777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 652 LAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..++++++++|+++.....+..+..+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777776666665555554333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=51.52 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
|..+...+...|++++|+..+++..+ ..|+ ...+..+...+...|++++|.++++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666655 3333 3444555555555566666666555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.32 Score=50.44 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=76.9
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH-HHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVT-FLVLLY 571 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~ 571 (834)
.++..+++.-.+..-++.|+.+|-+.. .+++..++++|.-+++ |+..-|..+|+--.. .-||... ..-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 344455555555555555555555554 2345555555555443 445556666665444 2444322 233444
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISAR--AEHYACIVDLLGRANRLDEAVELIEGMP-MEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g 645 (834)
-+...++-+.|..+|+..+.+ +..+ ...|..|++-=..-|++..+..+=+++. .-|...+-....+-|....
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 455566666677777655432 2222 4567777777677788877777666662 2344444444555555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=52.60 Aligned_cols=90 Identities=11% Similarity=-0.016 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 003273 604 CIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 681 (834)
....-+...|++++|..+|+-+- ..-+..-|..|...|...++++.|...|..+..++++|+.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34444567888888888887652 1235667889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 003273 682 KDVARIRSLMKH 693 (834)
Q Consensus 682 ~~a~~~~~~m~~ 693 (834)
+.|+..|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988865
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0022 Score=52.92 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCC-CCCeeeHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHhHH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENV-KLNVVTWSAVIAGYAQRG--------HGHEALDVFRQMQFCGLEPNVVTL 353 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~ 353 (834)
-...|.-+...+++.....+|+.+...|+ .|++.+|+.++.+.++.. +.-+.+.+|++|+..+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666677999999999999999999 999999999999887653 244688999999999999999999
Q ss_pred HHHHHhhhh
Q 003273 354 VSLLSGCAS 362 (834)
Q Consensus 354 ~~ll~a~~~ 362 (834)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0099 Score=60.67 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA-CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888899999999988532 2234445444444 333567777999999998754 445677889999
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 608 LLGRANRLDEAVELIEGMP-MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.+.+.|+.+.|..+|++.- .-|. ..+|...+..-..+|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999872 1233 35999999999999999999999999999988743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.28 Score=50.23 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=51.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC-----Ch-hHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCC--hHHHH
Q 003273 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAP-----DG-VTFLVLLYACSHSGMVDQGLKYFDSMSKE-FGISAR--AEHYA 603 (834)
Q Consensus 533 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~ 603 (834)
.+...+.+.|++++|+++|++....-... +. ..|...+-++...|++..|.+.++..... .++..+ .....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 34555667777777777777766532221 11 12333344556677888888888776522 122222 33455
Q ss_pred HHHHHHhh--cCCHHHHHHHHHhCC
Q 003273 604 CIVDLLGR--ANRLDEAVELIEGMP 626 (834)
Q Consensus 604 ~l~~~~~~--~g~~~~A~~~~~~~~ 626 (834)
.|++++-. ...+++|+.-|+++.
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHhCCHHHHHHHHHHHcccC
Confidence 56666643 345677777777764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00021 Score=45.79 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 654 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00099 Score=51.31 Aligned_cols=53 Identities=9% Similarity=0.190 Sum_probs=44.7
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|+++.|+..++++++.+|+++.++..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788889999999999999999999999999999999999999888877653
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0024 Score=64.56 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHH---hHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDS---MSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-------P-MEPT 630 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~ 630 (834)
...|..|.+.|.-.|+++.|+..++. +.+++|-.. ....++.+.+++.-.|+++.|.+.|+.. . -...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 34577777777788999999988773 334455433 2456888999999999999999988764 1 1123
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELE------SEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
..+..+|.+.|....+++.|+....+-+++- .....++..|+++|...|.-+.|..+....++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4567788889888889999998888765542 11346888999999999999999887766554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.024 Score=53.05 Aligned_cols=80 Identities=8% Similarity=0.028 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYAC 604 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 604 (834)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+...|++++|+..++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34566677777778888888888888876432221 34677777788888888888888887763 2332 344555
Q ss_pred HHHHHh
Q 003273 605 IVDLLG 610 (834)
Q Consensus 605 l~~~~~ 610 (834)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=51.51 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=50.9
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
..+...++++.|.++++++++++|+++..+..++.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999999887643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=49.84 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888877 3345 466888888889999999999999999999999764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.057 Score=55.34 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=67.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHH
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS-GMVDQGLKYFDSMSKEFGISAR----AEHYACIVDLL 609 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~ 609 (834)
+..|...|++..|-..+.++- ..|... |++++|+++|+...+-+..... ...+..+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 455556666665555554433 345555 6777777777766543322222 34556677888
Q ss_pred hhcCCHHHHHHHHHhCC---CC-C----CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 610 GRANRLDEAVELIEGMP---ME-P----TPI-IWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~~---~~-p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.+.|++++|.++|++.. .. + +.. .+-..+-.+...||...|...+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 88999999999888752 11 1 111 112222235667899999999999999988643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.024 Score=56.07 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=82.5
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 596 SARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIH---ANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
+-|.+.|--|...|.+.|+++.|...|.+. ... +++..+..+..++..+ ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346778888888888888888888888776 223 4566777777764332 25678999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCC
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~~~ 696 (834)
|+..+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.16 Score=54.79 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQ 581 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 581 (834)
+-.+|+..+|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+.+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccch
Confidence 3455666677777775443 345555555555555433 234445555555566677778
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-MEPTP 631 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 631 (834)
|.++|.+|-. ...++++....|+++||..+.++.| ..||+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 8888887742 3568889999999999999999886 33443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.068 Score=48.43 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=95.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHH
Q 003273 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI-SARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT---PII 633 (834)
Q Consensus 559 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~ 633 (834)
+.|....-..|..+....|+..||...|++... |+ .-|....-.+..+....+++.+|...+++. ...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777778888888888888877754 43 445666667777777788888888777765 21121 223
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
--.+...+...|..+.|+..++.++.--| ++..-...+.+++++|+..++..-...+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33455668889999999999999999988 477777888899999999888766555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0072 Score=61.67 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHh
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAG-YAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSG 359 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 359 (834)
.+|..++...-+.+..+.|..+|.+..+.+.. +...|-..... |...++.+.|..+|+...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk---------------- 64 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLK---------------- 64 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------
Confidence 35677777777777777777777777654211 12222222222 2223444446666665554
Q ss_pred hhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc----cchHHHHHHHH
Q 003273 360 CASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV----ATWTVMIGSYS 435 (834)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~ 435 (834)
.++.+...+...++.+.+.++.+.|+.+|++....-+.. ..|...+.-=.
T Consensus 65 --------------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 65 --------------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp --------------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred --------------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999987554443 37888888888
Q ss_pred hcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 436 QNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
+.|+.+.+.++.+++.+ ..|+..++
T Consensus 119 ~~Gdl~~v~~v~~R~~~----~~~~~~~~ 143 (280)
T PF05843_consen 119 KYGDLESVRKVEKRAEE----LFPEDNSL 143 (280)
T ss_dssp HHS-HHHHHHHHHHHHH----HTTTS-HH
T ss_pred HcCCHHHHHHHHHHHHH----HhhhhhHH
Confidence 88999999999888876 45554333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0046 Score=57.82 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=81.1
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHc-----CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc-------------
Q 003273 269 KKVFERM--KVKDVVSWNAMVTGYSR-----IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR------------- 328 (834)
Q Consensus 269 ~~~~~~~--~~~d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~------------- 328 (834)
...|+.. ..+|-.+|..+++.|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 46788899999999875 477888888999999999999999999999976542
Q ss_pred ---CChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 329 ---GHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 329 ---g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
.+.+-|++++++|...|+.||..|+..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 22356999999999999999999999999999877643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0029 Score=51.12 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=50.9
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 003273 541 HGLGDKAHWAFDQMRKEGLA-PDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 618 (834)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888874321 2344455577788888888888888876 2 22232 23333457777788888888
Q ss_pred HHHHHh
Q 003273 619 VELIEG 624 (834)
Q Consensus 619 ~~~~~~ 624 (834)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.022 Score=51.52 Aligned_cols=108 Identities=13% Similarity=0.169 Sum_probs=94.2
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 587 DSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM---PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 587 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
++..++..+.|++.+--.|...+.+.|+..||...|++. +...|....-.+..+....++...|...++.+.+-+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 344455677899998899999999999999999999987 45578888888999999999999999999999999886
Q ss_pred --CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 664 --KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 664 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+.....++.+|...|++++|+..|+.....
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5677889999999999999999999988764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.14 Score=50.86 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=46.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCCCccc----hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPKNRDVAT----WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.....+.+.|++++|.+.|+.+....|+... .-.++.+|.+.+++++|+..|++.++ ..|+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~----~~P~~ 102 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTH 102 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCcCC
Confidence 3445567789999999999999866665422 13456778899999999999999987 45544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0018 Score=49.83 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
..|++++|.++|+.+.+. .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666655432 1123444445555555555555555555555
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.033 Score=61.76 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 647 VELGELAANRLLEL--ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 647 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.+.+.+.+++..++ +|.++.+|..++-++...|++++|...++++.+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44566666666664 67778889999999999999999999999998765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.92 Score=47.44 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=57.4
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 619 VELIEGMPMEP----TPIIWVALLNG--CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 619 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
+.++++.++.| +...-|.|..| ...+|++.++.-...-+.++.| ++.+|..++-++....+++||-.++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455554433 33455666666 5789999999999999999999 7999999999999999999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.071 Score=54.32 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=77.1
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC-------C--CChhHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCC-Ch
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK-------Q--RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK----EGLAP-DG 563 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~ 563 (834)
..|..|.+.|.-.|+++.|...-+.-. . .....+..+.+++.-.|+++.|.+.|+.... .|-+. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666777777765544322 0 1234667778888888888888888877543 33222 24
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHH---hc-CCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSK---EF-GISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
.+..+|.++|.-...+++|+.++..-.. +. ...-....+.+|..+|...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5566788888888888888888775321 10 1112344555666666666666666655543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.044 Score=47.24 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=67.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLG 610 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 610 (834)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999999887665 45677888889999999999999998876432211 1222233445677
Q ss_pred hcCCHHHHHHHHHhC
Q 003273 611 RANRLDEAVELIEGM 625 (834)
Q Consensus 611 ~~g~~~~A~~~~~~~ 625 (834)
..|+.+||++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999888876543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.019 Score=61.02 Aligned_cols=121 Identities=13% Similarity=0.046 Sum_probs=88.7
Q ss_pred CCCCcccHHHHHHHHccCCCchHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCC-CCcchH
Q 003273 131 WHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS--GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGI-CDIVSW 207 (834)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~ 207 (834)
.+.+......+++.+....+++.+..++-....+ ....-..+..++|..|.+.|..+.+..+++.=...|+ ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4455556677777777777777777766666554 2222234556888888888888888888887777775 788888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhc
Q 003273 208 NTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACAS 252 (834)
Q Consensus 208 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~ 252 (834)
|.||..+.+.|++..|.++...|... ..-.+..|....+.+|..
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHH
Confidence 88888888888888888888888766 566667777777777763
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.45 Score=49.19 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=52.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhch
Q 003273 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 365 (834)
.|.-+...|+...|.++-.+.. .||..-|-..|.+++..++|++-..+... +-.+.-|-.++.+|...|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555555544332 13555555555555555555544443221 1123445555555555555
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
..+|..+...+ ....-+.+|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~----------------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444333221 113456788888888888765433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.5 Score=48.11 Aligned_cols=351 Identities=14% Similarity=0.134 Sum_probs=164.0
Q ss_pred hhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCcc--------chHhHHHHhhccCCch
Q 003273 186 LSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV--------SLVNALSACASLGTWS 257 (834)
Q Consensus 186 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--------t~~~~l~a~~~~~~~~ 257 (834)
+++|.+..+.- |....|..+...-.+.-.++-|...|-+...-.|++.-.. .--+-+.+
T Consensus 679 ledA~qfiEdn-----PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~-------- 745 (1189)
T KOG2041|consen 679 LEDAIQFIEDN-----PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA-------- 745 (1189)
T ss_pred hHHHHHHHhcC-----CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--------
Confidence 45555554432 3556788777776666667777777766644323321000 00011111
Q ss_pred hhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC--CCeeeHHHHHHHHHhcCChhHHH
Q 003273 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVK--LNVVTWSAVIAGYAQRGHGHEAL 335 (834)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~ 335 (834)
-.|.+++|++++-.+..+|.. |..+.+.|++-...++++.= ..+.. --..+|+.+...+.....+++|.
T Consensus 746 ---~~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g-~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 ---FYGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG-GSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred ---hhcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246677777777666655532 34455556665555554321 00000 01234666666666666666666
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHH
Q 003273 336 DVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFD 415 (834)
Q Consensus 336 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 415 (834)
+.|..-.. ....+.++....+++.-+.+. . .+|.+....-.+.+|+...|.-++|.+.|-
T Consensus 817 ~yY~~~~~---------~e~~~ecly~le~f~~LE~la-----~------~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 817 KYYSYCGD---------TENQIECLYRLELFGELEVLA-----R------TLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHhccc---------hHhHHHHHHHHHhhhhHHHHH-----H------hcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 66554321 111222333322222211111 1 345555566667777777777777776665
Q ss_pred hcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcc
Q 003273 416 AIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEML 495 (834)
Q Consensus 416 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 495 (834)
+-. .|. +-+..+...+++.+|.++-+...- |...|+. . ..+-++ +.+...
T Consensus 877 r~s--~pk-----aAv~tCv~LnQW~~avelaq~~~l------~qv~tli---a--------k~aaql---l~~~~~--- 926 (1189)
T KOG2041|consen 877 RRS--LPK-----AAVHTCVELNQWGEAVELAQRFQL------PQVQTLI---A--------KQAAQL---LADANH--- 926 (1189)
T ss_pred hcc--CcH-----HHHHHHHHHHHHHHHHHHHHhccc------hhHHHHH---H--------HHHHHH---Hhhcch---
Confidence 543 221 234455566666677666555432 2222221 0 001111 111110
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHH----HHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQRN---VVSWTSLMTGY----GMHGLGDKAHWAFDQMRKEGLAPDGVTFLV 568 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 568 (834)
---|.++.+.|+.-+|.+++.+|.+.. -+.|--+-..| .-..+..++++-.++....|...|...
T Consensus 927 -----~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~--- 998 (1189)
T KOG2041|consen 927 -----MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD--- 998 (1189)
T ss_pred -----HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh---
Confidence 123667888888777777777776211 11111111111 111223344444444444444333221
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
+...|...++-++.+..-+ | ....||-.|..--...|..+.|++.--.
T Consensus 999 ----lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 999 ----LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred ----hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 1223333344444332211 1 2344555555666677888888775433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0084 Score=46.21 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHhHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSG-MVDQGLKYFDSMSK 591 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 591 (834)
+...|..+...+...|++++|+..|++.++ +.|+ ...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888888888999999999999888 5676 677888888888888 78888888887763
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.055 Score=44.91 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC--------CHHHHHHHHHHhHHhcCCCCChH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APDGVTFLVLLYACSHSG--------MVDQGLKYFDSMSKEFGISARAE 600 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 600 (834)
+-...|..+...|++.....+|+.+++.|+ .|...+|+.++.+..+.. ++-+.+.+|+.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667899999999999999999 889999999998866543 244566778888754 7888888
Q ss_pred HHHHHHHHHhh
Q 003273 601 HYACIVDLLGR 611 (834)
Q Consensus 601 ~~~~l~~~~~~ 611 (834)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.01 Score=62.29 Aligned_cols=63 Identities=17% Similarity=-0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDG---SYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...|+.+..++...|++++|+..++++++++|++.. +|+.++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334555555555555555555555555555554442 255555555555555555555544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.34 Score=48.17 Aligned_cols=169 Identities=10% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CChh-H---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ--RNVV-S---WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACS 574 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~ 574 (834)
....+.+.|++++|.+.|+.+.. |+.. . .-.++.+|-+.+++++|...|++.++ ..|+ ...+.....+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 34445556777777777776652 3221 1 12334556667777777777777776 3443 223333333322
Q ss_pred h--cC---------------C---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003273 575 H--SG---------------M---VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634 (834)
Q Consensus 575 ~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 634 (834)
. .+ + ..+|...|+.++ +-|=...-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHH---HHHHH
Confidence 1 10 1 122223333333 22222333344443333321 11111
Q ss_pred H--HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 635 V--ALLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 635 ~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
. ....-|.+.|++.-|..-++.+++--|+.+ .+...+..+|...|..++|..+.+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 223337788889999999999999888754 567788999999999999999887664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.23 Score=51.80 Aligned_cols=161 Identities=16% Similarity=0.048 Sum_probs=102.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCC---C----hhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQR---N----VVSWTSLMTGYGM---HGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 570 (834)
-.|+-.|....+++.-.++.+.+... + ...-....-++.+ .|+.++|++++..+....-.+++.||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34445577777777777777777632 1 1111223345555 788888888888876666677778887777
Q ss_pred HHHHh---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---H-----hC--CC
Q 003273 571 YACSH---------SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD----EAVELI---E-----GM--PM 627 (834)
Q Consensus 571 ~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~-----~~--~~ 627 (834)
..|-. ....++|+..|.+. +.+.|+..+--.++.++...|.-. +..++. . +- ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 22467777777644 466676554444555555555422 222222 1 11 11
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 628 EPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
..|.-.+.+++.++...||.+.|.+++++++++.|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2455566899999999999999999999999998753
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=57.60 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLLSN 673 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 673 (834)
|..-++.+.+.|++++|...|+.+ ...|+ ...+.-+...+...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555444443 11122 1234445555555666666666666666555543 234444455
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 003273 674 IYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 674 ~~~~~g~~~~a~~~~~~m~~ 693 (834)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.049 Score=57.91 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=87.9
Q ss_pred CcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CCChhH
Q 003273 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRN--QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----QRNVVS 530 (834)
Q Consensus 457 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~ 530 (834)
...+...+..+++.+....+++.+..++-..... ... .-+.+..++|..|.+.|..+++..+++.=. -||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~-~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY-LLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc-ccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445566667777777777777777776666554 222 334455688888888888888888887654 478888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS 576 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 576 (834)
+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888887777778877777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.44 Score=50.45 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=37.7
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNV----VSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.++..++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|...|+.++|++.+++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666554 3432 2366666666666666666666666665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0057 Score=42.09 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
.+|..+..++...|+.+.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888889999999999999999999999999988887764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.039 Score=51.79 Aligned_cols=97 Identities=13% Similarity=0.245 Sum_probs=73.4
Q ss_pred HHHhhc--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--------------
Q 003273 518 VVFDNL--KQRNVVSWTSLMTGYGM-----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHS-------------- 576 (834)
Q Consensus 518 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 576 (834)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445554 35677777777777764 466777777888888888888888888888876542
Q ss_pred --CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 003273 577 --GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615 (834)
Q Consensus 577 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 615 (834)
.+.+-|++++++|. .+|+-||.+++..+++.+++.+..
T Consensus 115 yp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 23477889999995 579999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.028 Score=57.73 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeE
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGT 711 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 711 (834)
.++.+|...|.+.+++..|++...++++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 456677777888999999999999999999999999999999999999999999999999763
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 003273 712 ATFFVGDRTHPQSQKIYEILAGLVQRIKA 740 (834)
Q Consensus 712 ~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 740 (834)
.|..++|...|..|.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 45556777777777766654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.034 Score=47.93 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=57.4
Q ss_pred HHHHhhcCCHHHHHHHHHhCC---CC-CC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 003273 606 VDLLGRANRLDEAVELIEGMP---ME-PT-PIIWVALLNGCRIHANVELGELAANRLLELESE---KDGSYTLLSNIYAN 677 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~---~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 677 (834)
..++-..|+.++|+.+|++.. .. ++ ...+-.+.+.++..|++++|..+++..++-.|+ +......++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344555666666666666541 11 11 234555666788888888888888888887777 55666777778888
Q ss_pred cCCchhHHHHHHHH
Q 003273 678 AGRWKDVARIRSLM 691 (834)
Q Consensus 678 ~g~~~~a~~~~~~m 691 (834)
.|+++||.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888776443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.68 Score=44.69 Aligned_cols=166 Identities=10% Similarity=-0.042 Sum_probs=102.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCC--Ch--------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLKQR--NV--------VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 569 (834)
+++|...|.-..-+++-...|+.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++...+-++.....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 456666665555555555555443321 22 23355666666677888888899999885444467778888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhc----CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHh
Q 003273 570 LYACSHSGMVDQGLKYFDSMSKEF----GISARAEHYACIVDLLGRANRLDEAVELIEGMPME-P-TPIIWVALLNGCRI 643 (834)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~~~~~ 643 (834)
.+.-.+.|+.+.|..+|+...+.. ++.-..-+.-.+...|.-+.++.+|...+.+.+.. | |+..-|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888999999999998665432 22222333333444566677777888777777432 2 23333333333344
Q ss_pred cCcHHHHHHHHHHHHhcCCCCC
Q 003273 644 HANVELGELAANRLLELESEKD 665 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.|+...|.+..+.+.+..|...
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccc
Confidence 5677778888888887777543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.019 Score=44.74 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=49.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 607 DLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
..|.+.+++++|.+.++++ ...| +...|......+...|+++.|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677788888888888877 3334 45677777888889999999999999999999977655433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.53 Score=40.27 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=85.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 618 (834)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467788888888887763 234445555544444444455566666664433332 34555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
...+-.+. .+.......+.+...+|..+.-.+++..+.+-+..+|.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55444443 233445556777888999898899999988765557899999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.11 Score=52.05 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDG----VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
...|++++|+..|+.+++ ..|+. ..+..+..++...|++++|...|+.+.+.+.-.|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---------------- 215 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---------------- 215 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----------------
Confidence 445666666666666666 34442 34555555666666666666666655543221111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
....|..+...+...|+.+.|...++++++..|++.
T Consensus 216 ---------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 216 ---------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ---------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 122333344445566677777777777777766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.22 Score=49.43 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
..-++.-...++. |...|-.|...|.+.|+.+.|..-|++..+
T Consensus 142 ~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 142 IARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3333444444555 888888888888888888888888888776
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.12 Score=46.85 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
....++..+...|+.+.|...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777788999999999999999999999999999999999999999999999988853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.9 Score=47.38 Aligned_cols=255 Identities=14% Similarity=0.065 Sum_probs=136.0
Q ss_pred ChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc--ccHHH--H--HHHHhhhhhHHH
Q 003273 406 SVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA--FTLSC--A--LMACARLAALRF 479 (834)
Q Consensus 406 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~--~t~~~--l--l~a~~~~~~~~~ 479 (834)
.+++|.+..+. +|.+..|..+...-.+.-.++-|...|-+...- .|++.-. .|..+ + ...-+--|.+++
T Consensus 678 gledA~qfiEd----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 678 GLEDAIQFIED----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred chHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 35666665544 567788877776665555666666666554321 2221100 00000 0 001122355666
Q ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003273 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554 (834)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m 554 (834)
|+.++-.+-++. .-|.++.+.|++-...++++.-.. .-...|+.+...++....+++|.+.|..-
T Consensus 753 aek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 753 AEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666654444332 235666666766666666654331 11346666666666666666666666543
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003273 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIW 634 (834)
Q Consensus 555 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 634 (834)
.. -...+.++.+..++++-..+-. .++.+....-.|.+++.+.|.-++|.+.+-+-.. |.
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~la~------~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pk---- 882 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVLAR------TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PK---- 882 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHHHH------hcCcccchHHHHHHHHHhhchHHHHHHHHHhccC-cH----
Confidence 22 1134445555555555444333 3344556667788899999999999888866642 22
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHH-------------hcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCcc
Q 003273 635 VALLNGCRIHANVELGELAANRLL-------------ELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKK 698 (834)
Q Consensus 635 ~~ll~~~~~~g~~~~a~~~~~~~~-------------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 698 (834)
+.+..|...+++.+|.+.+++.. ++-. ..-..--+..+.++|+.-+|.++..+|.++..+|
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~--~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLA--DANHMEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh--hcchHHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 23445555555555555444321 1100 0111223456777888888888888887654443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.73 E-value=4.1 Score=44.60 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=125.4
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQR---NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 571 (834)
.....|..-++.-.+.|+.+...-.|++...| -...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44566677777788889999999999888744 223555555555555888888888877766433333444333333
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH----H-H
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAV---ELIEGM-PMEPTPIIWVALLN----G-C 641 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~----~-~ 641 (834)
-+-..|+++.|..+++.+.+++ |+. ..-.--+.+..|.|+.+.+. +++... +..-+..+...+.- - +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4667889999999999998753 553 33334566778889999888 555544 22222222222221 1 4
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 681 (834)
...++.+.|..++.++.+..|++...|..+.+.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5667889999999999999999999999999988777643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.017 Score=45.84 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC---CCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLEL----ES---EKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
+++.+...+...|++++|+..+++++++ .+ +-..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555666666666666655543 11 123456677777777777777777766654
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.7 Score=41.03 Aligned_cols=192 Identities=16% Similarity=0.116 Sum_probs=116.3
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH-
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK-----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLY- 571 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 571 (834)
.........+...+.+..+...+.... ......+..+...+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 444555556666666666666665543 2333455555556666666777777777776632222 122222222
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISA----RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT--PIIWVALLNGCRIH 644 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~ 644 (834)
++...|+++++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56777777777777776642 222 2333444444466677777777777666 22233 45666677777777
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++.+.+...+....+..|.....+..++..+...|.++++...+.....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777888888888887776555666666766666667777777666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.46 E-value=6.2 Score=44.88 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=49.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCCch
Q 003273 605 IVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLE-LESEKDGSYTLLSNIYANAGRWK 682 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~ 682 (834)
++..+....+.+.+..+.+.... -++..|--++..+...+.++.-.+...++++ +..++.-.-..+.+++++.+...
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~lt 788 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTLT 788 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCceE
Confidence 34445566677777777777753 3677888888888888876666555555443 33334444466677777776543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.21 Score=51.50 Aligned_cols=138 Identities=9% Similarity=-0.030 Sum_probs=97.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
.+.|.+.|++..|...|++.+.. -+. ...-+.++...... .-...+..+.-+|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45667777777777777776651 111 11111122222111 123346678888999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhH-HHHHHHH
Q 003273 615 LDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV-ARIRSLM 691 (834)
Q Consensus 615 ~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 691 (834)
+.+|++..++. .. ++|+-..---..+|...|+++.|+..++++++++|+|..+-.-|+.+-.+....++. +++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877 22 356667767778899999999999999999999999999988888888777776654 7888888
Q ss_pred Hhc
Q 003273 692 KHT 694 (834)
Q Consensus 692 ~~~ 694 (834)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.53 Score=45.47 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCC--CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKL--NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCA 361 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 361 (834)
-.....+.+.|++++|...|+.+....+.. -..+.-.++.++.+.|++++|...+++.++.-..-...-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 344455678899999999999998764331 123455667788899999999999999877532222222333333322
Q ss_pred hhchhhhh------hHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHH
Q 003273 362 SVGALLLG------KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYS 435 (834)
Q Consensus 362 ~~~~~~~a------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~ 435 (834)
........ ...... -...+..++.-|-...-..+|......+. +.=...--.+..-|.
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~--------------A~~~~~~li~~yP~S~y~~~A~~~l~~l~--~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRK--------------AIEEFEELIKRYPNSEYAEEAKKRLAELR--NRLAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHH-TT---HHHHH--------------HHHHHHHHHHH-TTSTTHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHH--------------HHHHHHHHHHHCcCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 21111000 000000 01123444444444455555554444332 100000112345577
Q ss_pred hcCChhHHHHHHHhhcc
Q 003273 436 QNGGANDALALFPQMFQ 452 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~ 452 (834)
+.|.+..|..-|+.+++
T Consensus 153 ~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp CTT-HHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHH
Confidence 77888888887777776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.038 Score=43.73 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 565 TFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
++..+...|...|++++|+.+|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555443
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.7 Score=41.88 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ--RN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG--VTFLVLLYACS 574 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~ 574 (834)
....+...|++++|...|+.+.. |+ ....-.++.++-+.|++++|...|++.++ .-|+. ..+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHH
Confidence 34445556667777777666651 21 12344455566666777777777776666 23431 11222222211
Q ss_pred hc-------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH--HHHH
Q 003273 575 HS-------------GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWV--ALLN 639 (834)
Q Consensus 575 ~~-------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~ll~ 639 (834)
.. +...+|...|+. ++.-|=.+....+|...+..+. +...-. .+..
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 11 111222222222 2333333333444444333321 111111 1233
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHH
Q 003273 640 GCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 685 (834)
-|.+.|....|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 37788899999999999999988754 35677888899999887444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.17 Score=43.03 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCC---chHHHHHHHHHhcCC
Q 003273 607 DLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELE-SEKD---GSYTLLSNIYANAGR 680 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 680 (834)
-++...|+++.|++.|.+. . .+..+..||.-..+++.+|+.+.|..-+++++++. |... .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888766 2 22457789999999999999999999999999984 4322 367888889999999
Q ss_pred chhHHHHHHHHHhcC
Q 003273 681 WKDVARIRSLMKHTG 695 (834)
Q Consensus 681 ~~~a~~~~~~m~~~~ 695 (834)
-+.|+.-|....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998887765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.064 Score=48.73 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhHH
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-----CGLEPNVVTL 353 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~ 353 (834)
.....++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|++.|+++.+ .|+.|+..|-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667788889999999999999999998766 888999999999999999999999998853 4999988764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.69 Score=49.14 Aligned_cols=219 Identities=14% Similarity=0.072 Sum_probs=118.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCChHHHHHHHHHHhhcCCHHH
Q 003273 540 MHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF--GISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 540 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
+..+.+.-+++-++.++ +.||..+-..++ +-..+..+.++.++|++..+.- .+..+. .....|.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~--------~~~~~g~--- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQ--------FLQHHGH--- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhh--------hhhcccc---
Confidence 44556666777777777 778754433333 3334556788888888765420 000000 0001111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 618 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
..+.+.+-...|-..+-..|...+++.|+.++|++.++.+++..|. +-.++..|+..|...+++.|+..++.+--+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111112233444455666678888888999998888887665 34678888889999999999888887765444
Q ss_pred CccCCceeEEE--eCCeEEEEeeCCCCCCC-------hHHHHHHHHHHHHHHHHcCcccCCCcccccCChhhhhhhh-hc
Q 003273 696 VKKRPGCSWVQ--GKEGTATFFVGDRTHPQ-------SQKIYEILAGLVQRIKAMGYVPQTSFALHDVDDEEKGDLL-FE 765 (834)
Q Consensus 696 ~~~~~~~s~~~--~~~~~~~f~~~~~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 765 (834)
..+....+|.. ++-+ .+||+..|. +......++-+.+.++...++|.=-.-...+.-. -++.+ ..
T Consensus 326 lpkSAti~YTaALLkaR----av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrG 400 (539)
T PF04184_consen 326 LPKSATICYTAALLKAR----AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRG 400 (539)
T ss_pred CCchHHHHHHHHHHHHH----hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCC
Confidence 44444444321 0100 122322222 1222334566777788888888643333332211 22222 34
Q ss_pred ccHHHHHHhchh
Q 003273 766 HSEKLALAYGIL 777 (834)
Q Consensus 766 ~~e~la~~~~~~ 777 (834)
-||-+|-||.-+
T Consensus 401 DSEAiaYAf~hL 412 (539)
T PF04184_consen 401 DSEAIAYAFFHL 412 (539)
T ss_pred cHHHHHHHHHHH
Confidence 577777776544
|
The molecular function of this protein is uncertain. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.56 Score=50.86 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=48.5
Q ss_pred HHHHHhcCChhHHHHHHHH-----H-HHCCCC---CCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhh
Q 003273 322 IAGYAQRGHGHEALDVFRQ-----M-QFCGLE---PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLM 392 (834)
Q Consensus 322 i~~~~~~g~~~~A~~l~~~-----m-~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 392 (834)
...+...|+.++|.++.-+ | .+-+-+ .+..+...+-.-+-+...+..|.++|..+-..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------------- 776 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------------- 776 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------------
Confidence 3444556666666655321 1 111112 22333333333344455566666666655332
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc
Q 003273 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDV 424 (834)
Q Consensus 393 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~ 424 (834)
.+++++....+++++|..+-++.++..+|+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccccccc
Confidence 456777888888888888888877544554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.9 Score=48.27 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=96.6
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-cCCCCC-hhHHHHHHHHHHh---------cCCHHHHHHHHHHhH
Q 003273 529 VSW--TSLMTGYGMH-----GLGDKAHWAFDQMRK-EGLAPD-GVTFLVLLYACSH---------SGMVDQGLKYFDSMS 590 (834)
Q Consensus 529 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~-~~t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 590 (834)
..| ..++.|.... ...+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 135678888998882 227777 4445444433221 123445555555554
Q ss_pred HhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 591 KEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 591 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
.+.| |......+..++.-.|+++.|..+|++. ...|| +..|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 4555666666677777788888888887 34566 4577777777778888899999999999998875544
Q ss_pred HHH--HHHHHHhcCCchhHHHHHH
Q 003273 668 YTL--LSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 668 ~~~--l~~~~~~~g~~~~a~~~~~ 689 (834)
-.. .+++|... ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 333 33345544 4566666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.08 E-value=8.1 Score=44.02 Aligned_cols=53 Identities=8% Similarity=0.191 Sum_probs=27.9
Q ss_pred HHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHh
Q 003273 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARM 230 (834)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 230 (834)
.-|....++..-...++.+.+.|..+...-+.|+.+|.+.++.++-.++.+..
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 33333344444444555555555555555556666666666665555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.03 E-value=5.5 Score=41.84 Aligned_cols=439 Identities=11% Similarity=0.100 Sum_probs=215.3
Q ss_pred chHHHHHHhhCCCchhHHHHhcccCCCCc-chhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCccc-HHHHHHHHcc
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRISPSPF-SVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYT-FPFVLKACGE 147 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~ 147 (834)
|-.|+.-|...|..+.-++.+++|..|-+ -...|..-|++-....+++....+|.+-....+..|..+ |..-++--..
T Consensus 45 ~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~ 124 (660)
T COG5107 45 YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEYIRRVNN 124 (660)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHHHHhhCc
Confidence 78899999999999999999999987655 225788888888888889999999998887655555432 3333332221
Q ss_pred CCCc---hHHHHHHHHHHH-hCCCCc-hhHHHHHHHHHHh---CC------ChhHHHHHHHhcCCCCCCCcc-hHHH---
Q 003273 148 LPSS---RCGSSVHAVICS-SGFDSN-VFVCNALMAMYAR---CD------TLSYARQLFDEMFQPGICDIV-SWNT--- 209 (834)
Q Consensus 148 ~~~~---~~a~~~~~~~~~-~g~~~~-~~~~~~Li~~~~~---~g------~~~~A~~~~~~m~~~~~~~~~-~~~~--- 209 (834)
.+.- ..-.+.++..+. .+++|- ...|+..+..+-. .| ++|..+..+.+|.....-|.. .|+-
T Consensus 125 ~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~ 204 (660)
T COG5107 125 LITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYEN 204 (660)
T ss_pred ccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 1111 111233444333 245443 3456666655421 23 345566677777655332221 2321
Q ss_pred ---HHHHHHhC---C----ChhHHHHHHHHhhhC-CCCCC----CccchHhHHHHhhccCCchhhh---------hcCcH
Q 003273 210 ---IVAAYAQS---G----DAEGGLMLFARMTGD-VKVQG----DGVSLVNALSACASLGTWSRGK---------QCGMM 265 (834)
Q Consensus 210 ---li~~~~~~---g----~~~~A~~~~~~m~~~-~~~~p----~~~t~~~~l~a~~~~~~~~~~~---------~~g~~ 265 (834)
=+.-.... | -+-.|...+++.... .|... +..|++.+-. -+...++..-+ ..+..
T Consensus 205 fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-~s~S~WlNwIkwE~en~l~L~~~~~ 283 (660)
T COG5107 205 FELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-TSDSNWLNWIKWEMENGLKLGGRPH 283 (660)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc-cccchhhhHhhHhhcCCcccCCCcH
Confidence 11111111 1 133455555554321 02211 1112221111 00000000000 01111
Q ss_pred HH-HHHHHHhcC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHH-HHHhcCChhHHHHHHHH
Q 003273 266 EE-AKKVFERMK---VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIA-GYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 266 ~~-A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~ 340 (834)
.+ ..-+++.+. .-...+|----..+...++-+.|+..... |.. +..+.+..++ .|--..+-++....|+.
T Consensus 284 ~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~-~spsL~~~lse~yel~nd~e~v~~~fdk 358 (660)
T COG5107 284 EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIE-MSPSLTMFLSEYYELVNDEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----ccc-CCCchheeHHHHHhhcccHHHHhhhHHH
Confidence 11 001111111 01223333333344455566666655433 322 2222322232 23333344444444444
Q ss_pred HHHCCCCCCHhHHHHHHHhhhh---hchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhc
Q 003273 341 MQFCGLEPNVVTLVSLLSGCAS---VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 341 m~~~g~~pd~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 417 (834)
..+. ...=-+.+.+=+. -|+.+.-.+ ..+++ ...-..+|..+++.-.+..-++.|+.+|-+.
T Consensus 359 ~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~E---ll~kr-------~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 359 CTQD-----LKRKYSMGESESASKVDNNFEYSKE---LLLKR-------INKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred HHHH-----HHHHHhhhhhhhhccccCCccccHH---HHHHH-------HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3220 0000000000000 111111111 11111 1123456777777777777788888888877
Q ss_pred CCCC---CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Q 003273 418 APKN---RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEM 494 (834)
Q Consensus 418 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 494 (834)
.+.+ +++..++++|.-++. |++.-|..+|+.-+. --||...|
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~----~f~d~~~y------------------------------ 468 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL----KFPDSTLY------------------------------ 468 (660)
T ss_pred hccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH----hCCCchHH------------------------------
Confidence 6433 577778888776653 556667777765443 23333222
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RN--VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVL 569 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 569 (834)
-+-.+..+...++-+.|..+|+...+ .+ ...|..||.--..-|+...+..+=++|.+ +-|...+....
T Consensus 469 -----~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF 541 (660)
T COG5107 469 -----KEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVF 541 (660)
T ss_pred -----HHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHH
Confidence 24445555666777777777775542 22 34677788777788888888888888887 56665444433
Q ss_pred HH
Q 003273 570 LY 571 (834)
Q Consensus 570 l~ 571 (834)
.+
T Consensus 542 ~S 543 (660)
T COG5107 542 TS 543 (660)
T ss_pred HH
Confidence 33
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.2 Score=41.76 Aligned_cols=177 Identities=15% Similarity=0.064 Sum_probs=100.9
Q ss_pred cCCHHHHHHHHhhcC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003273 510 SGDIDTARVVFDNLK--QRN-VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
.|-..-|+.=|.... .|+ +..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|++.-|.+=
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444443 343 34567666667777888888888887777 5554 44444444456667777777765
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI-EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
|...-+...-+|=...| +-.-.+.-+..+|..-+ ++.. ..|..-|+.-+-.+....=. -+.+++++.+...++
T Consensus 156 ~~~fYQ~D~~DPfR~LW---LYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~~n 229 (297)
T COG4785 156 LLAFYQDDPNDPFRSLW---LYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKIS--EETLMERLKADATDN 229 (297)
T ss_pred HHHHHhcCCCChHHHHH---HHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhhccch
Confidence 54433221222222222 22223344566666543 3332 34556677666654432211 123344444433332
Q ss_pred -------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 665 -------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 665 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+.+|.-|+.-|...|..++|..+|+.....
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 368899999999999999999999988654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.36 Score=42.08 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003273 559 LAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606 (834)
Q Consensus 559 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 606 (834)
..|+..+..+++.+|+..|++..|+++.+...+.|+++-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555555555555555566666665555555555554444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.2 Score=40.90 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=13.5
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
.++--..+|..+|..+.|-..+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Confidence 344555666666666655555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.4 Score=41.81 Aligned_cols=53 Identities=15% Similarity=0.020 Sum_probs=46.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccC
Q 003273 202 CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLG 254 (834)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~ 254 (834)
|+.....+++.+|+.+|++..|+++.+...+.+++.-+..+|..++.-+....
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 68888999999999999999999999999988888888888888888766443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.7 Score=39.01 Aligned_cols=120 Identities=11% Similarity=0.218 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMV 579 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 579 (834)
++..+.+.+........++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 33444444444444444444331 22334455555555442 2233333332 12334444566677777777
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRA-NRLDEAVELIEGMPMEPTPIIWVALLNGCR 642 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 642 (834)
+++..++..+.. +...++.+... ++++.|.+++.+.. +...|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 777777665521 22233334333 67777777776632 4556766666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=7.2 Score=40.25 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=97.0
Q ss_pred chhHHHHhcccCCCCcchhhHHHHHHHHHh--CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHH--ccCCCchHHHHHH
Q 003273 83 PSPALSLLQRISPSPFSVFWWNALIRRAVR--LRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKAC--GELPSSRCGSSVH 158 (834)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~ 158 (834)
+..+.+.|..-.. + .-|.+|-.++.. .|+-..|.++-.+-.+. +..|...+..||.+- .-.|+.+.|++-|
T Consensus 69 P~t~~Ryfr~rKR-d---rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 69 PYTARRYFRERKR-D---RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred cHHHHHHHHHHHh-h---hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 4455555554332 2 357777777654 46777777766654432 456666677777544 4569999999999
Q ss_pred HHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhC
Q 003273 159 AVICSSGFDSNVFV--CNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 159 ~~~~~~g~~~~~~~--~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 233 (834)
+.|.. .|.... ...|.----+.|..+.|++.-++.-...+.=...|.+.+...+..|+++.|+++++.-+..
T Consensus 144 eAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 144 EAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99985 333322 1223333346788899988888776654445677899999999999999999999887654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.7 Score=46.27 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCCCC
Q 003273 649 LGELAANRLLELESEKD 665 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~ 665 (834)
.|.++..++.+.+|..+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 35678888888888644
|
The molecular function of this protein is uncertain. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.39 Score=43.37 Aligned_cols=84 Identities=13% Similarity=-0.020 Sum_probs=51.0
Q ss_pred HHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003273 507 YSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 507 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 583 (834)
+...|++++|..+|.-+. .-|..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 345677777777776554 2345556666666666677777777776665532 123444555566666667777777
Q ss_pred HHHHHhHH
Q 003273 584 KYFDSMSK 591 (834)
Q Consensus 584 ~~~~~m~~ 591 (834)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 76666653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.17 E-value=13 Score=42.22 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 003273 545 DKAHWAFDQMRKEGLAP-----DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAV 619 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 619 (834)
+..+++|.+.-...+-| ........+..|.+.|-++|-.-++..| | .++.+|.-..-+-++.++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHH
Confidence 45566666655443333 1122334444555555555555555444 2 22333333344445556666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 620 ELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 620 ~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
++.++- .|...|..|++.+...=
T Consensus 682 efvKeq---~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 682 EFVKEQ---DDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHhc---CCHHHHHHHHHHhhcCc
Confidence 655443 47778888888766554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.26 Score=47.93 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=76.0
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHc-----CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcC-------------
Q 003273 270 KVFERMK--VKDVVSWNAMVTGYSR-----IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG------------- 329 (834)
Q Consensus 270 ~~~~~~~--~~d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g------------- 329 (834)
..|.... ++|-.+|-+.+..+.. .+.++-....++.|.+-|+..|..+|+.|+..+-+-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 5677888888877754 3567777788889999999999999999998664432
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 330 ---HGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 330 ---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345899999999999999999999999999876643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.1 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
.+|..+...+...|+.++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888889999999999999988886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.98 E-value=1 Score=39.77 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=40.6
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 609 LGRANRLDEAVELIEGM----PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
..+.|++++|.+.|+.+ |..| ....--.|+.++...++++.|...++++++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44567777777777665 2222 1234456777888889999999999999999887664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.92 E-value=10 Score=40.16 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=84.3
Q ss_pred HHhcCC-HHHHHHHHhhcC---CCChhHHHHHH----HHHHH---cCChHHHHHHHHHHHHcCCCCC----hhHHHHHHH
Q 003273 507 YSRSGD-IDTARVVFDNLK---QRNVVSWTSLM----TGYGM---HGLGDKAHWAFDQMRKEGLAPD----GVTFLVLLY 571 (834)
Q Consensus 507 y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~ 571 (834)
+-+.|. -++|.++++.+. .-|...-|... ..|.+ .....+-+.+-+-..+.|+.|- ...-+.|..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 334444 777888887776 33544444332 23332 1234445555555667788874 333444554
Q ss_pred H--HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 003273 572 A--CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL 637 (834)
Q Consensus 572 a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 637 (834)
| +...|++.++.-+-..+. .+.|++.+|.-++-.+....+++||.+++...| |+..+|++-
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 4 556799999887766665 688999999999999999999999999999998 676666553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.5 Score=41.04 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=79.7
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003273 269 KKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 269 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 348 (834)
++.+++...+....--.-.......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--..
T Consensus 123 r~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~ 201 (304)
T COG3118 123 RQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK 201 (304)
T ss_pred HHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence 33444444333333333344566788999999999888876544 55666778888999999999999988875432222
Q ss_pred CHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 003273 349 NVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418 (834)
Q Consensus 349 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 418 (834)
.......-|....+.........+....- ..|.|...-..|...|...|+.++|.+.+-.+.
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLA--------ADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222222222333333333333333222 234455666666666666666666665554444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=3.9 Score=43.66 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=75.5
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 512 DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 512 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
...+|.+.-++.. ..|......+..+....|+.+.|..+|++... +.|| ..+|......+...|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455556555554 34667777777777778889999999999888 7888 6667777777888899999999888
Q ss_pred HhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 588 SMSKEFGISAR---AEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 588 ~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
... .+.|. .....-.+++|+..+ +++|++++-+
T Consensus 397 ~al---rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 397 KSL---QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHh---ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 765 45554 334445566776554 6777777644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.73 E-value=19 Score=42.88 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=15.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHhh
Q 003273 209 TIVAAYAQSGDAEGGLMLFARMT 231 (834)
Q Consensus 209 ~li~~~~~~g~~~~A~~~~~~m~ 231 (834)
+-+.-++..+++.+|+++.++-+
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhR 704 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHR 704 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777887777766554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.72 Score=45.30 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACI 605 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 605 (834)
|+.-+.. .+.|++.+|...|...++.. |+ ...+..|..++...|++++|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5444433 45677888888888887742 33 3446677888888888888888888887776655553 666667
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 003273 606 VDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~ 625 (834)
.....+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 77777777777777666665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.1 Score=42.56 Aligned_cols=120 Identities=10% Similarity=0.057 Sum_probs=75.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCcHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVAL---LNGCRIHANVE 648 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~ 648 (834)
.....|++.++...|+..... .+-+.+.-..|..+|...|+.++|..++..+|.+-...-|..+ +....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777766532 2223455666777788888888888888887654333333331 11222222111
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
. ...+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 13345566778999999999999999999999998877666543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.6 Score=45.50 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=79.6
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----------
Q 003273 516 ARVVFDNLK--QRNVVSWTSLMTGYGMH-----GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG----------- 577 (834)
Q Consensus 516 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 577 (834)
.++.|..+. ++|-.+|-+++..+..+ +.++=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 67888888888887653 557777778889999999999999999998765532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 003273 578 -----MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 578 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 616 (834)
+-+-++.++++|. .+|+.||.++-..++++++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2356888999995 6799999999999999999998643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.44 Score=46.73 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
||...| |..++...|+++.|...|..+.+-.|++ +.++.-|+.+..+.|+-++|..+++...+
T Consensus 178 ~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 178 PNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred chhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444 5555555555555655555555544432 34555666666666666666666665544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.21 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEK 664 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 664 (834)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.30 E-value=17 Score=40.96 Aligned_cols=322 Identities=14% Similarity=0.118 Sum_probs=173.6
Q ss_pred hcCcHHHHHHHHHhcCCCC---hhHHHHHHHHHHcCCCH--HHHHHHH-HHhHhcCCCCCeeeHHHHHHHHHhcCChhHH
Q 003273 261 QCGMMEEAKKVFERMKVKD---VVSWNAMVTGYSRIGSF--EDAFALF-KKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~~--~~A~~l~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 334 (834)
..+.+..|.++-.-+..|. ..+|.....-+.+..+. +++.+.. +++... .. +.++|..+..--.+.|+.+-|
T Consensus 449 ~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~-~~iSy~~iA~~Ay~~GR~~LA 526 (829)
T KOG2280|consen 449 DRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LT-PGISYAAIARRAYQEGRFELA 526 (829)
T ss_pred hcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CC-CceeHHHHHHHHHhcCcHHHH
Confidence 5677888888888777665 56777888888776432 2333333 333322 23 677888888888899999999
Q ss_pred HHHHHHHHHCCCC----CCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHH
Q 003273 335 LDVFRQMQFCGLE----PNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA 410 (834)
Q Consensus 335 ~~l~~~m~~~g~~----pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 410 (834)
..+++.=...+-+ .+..-+...+.-+...|+.+...++.-.+.+.. + .-+...-..+.-.|
T Consensus 527 ~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---------~------~s~l~~~l~~~p~a 591 (829)
T KOG2280|consen 527 RKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---------N------RSSLFMTLRNQPLA 591 (829)
T ss_pred HHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---------H------HHHHHHHHHhchhh
Confidence 8887642221110 111223344444555555555555444443320 0 00011111223334
Q ss_pred HHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhh--cccC--CCCcCCcccHHHHHHHHhhhhhHHHHHHHHH-
Q 003273 411 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM--FQQD--KLVKPNAFTLSCALMACARLAALRFGRQIHA- 485 (834)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m--~~~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~- 485 (834)
..+|.+..+.. |.. .+-+.| +.++-.+++.-|..= .... .+..|+ ....-++|++......+.+..+
T Consensus 592 ~~lY~~~~r~~-~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 592 LSLYRQFMRHQ-DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hHHHHHHHHhh-chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHH
Confidence 44444332111 100 011112 222222222222110 0000 122232 3334445554443221111111
Q ss_pred H---------H-HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 486 Y---------V-LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 486 ~---------~-~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
. + .+.|..-.+..+ +--+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-.++-+.+.
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl-~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSL-HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcH-HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 1 1 122322122222 3334445667888999999988888888888888888999888887766655532
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 556 KEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 556 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
.++-|.-...+|.+.|+.++|.+++-... +.. -.+.+|.+.|++.+|.++--+
T Consensus 743 ------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 25667778889999999999999886553 221 467888999999988877544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.4 Score=47.94 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=84.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL 615 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 615 (834)
....|+++++.++...-. +-|. ..-...++.-+.+.|..+.|+++-..-. .-.++-.++|++
T Consensus 271 av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence 345677777766664111 2232 3336677777788888888887743322 234566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 616 DEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 616 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+.|.+..++.. +...|..|......+|+.+.|++++++.- -+..|+-+|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998877664 77799999999999999999999888754 35677788888888777777666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.17 E-value=3 Score=36.93 Aligned_cols=19 Identities=5% Similarity=-0.024 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 003273 647 VELGELAANRLLELESEKD 665 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p~~~ 665 (834)
...|...+++++..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5577778888888888653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=9.3 Score=37.07 Aligned_cols=165 Identities=16% Similarity=0.078 Sum_probs=117.0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----ChhHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--RNV-VSWTSLMT-GYGMHGLGDKAHWAFDQMRKEGLAP----DGVTF 566 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~ 566 (834)
.....+..+...+...++...+...+..... ++. ..+..... .+...|+.+.|...|.+... ..| ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 170 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEAL 170 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHH
Confidence 4445555666667777778888888877763 222 23333333 68889999999999999866 444 24444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRI 643 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 643 (834)
......+...++.+++...+....+ .... ....+..+...+...|.+++|...+... ...|+ ...+..+...+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 5555557788899999999998874 2233 3677888888999999999999998877 33344 4455556666566
Q ss_pred cCcHHHHHHHHHHHHhcCCC
Q 003273 644 HANVELGELAANRLLELESE 663 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~ 663 (834)
.++.+.+...+.+.++..|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 249 LGRYEEALEALEKALELDPD 268 (291)
T ss_pred cCCHHHHHHHHHHHHHhCcc
Confidence 67799999999999999886
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.65 E-value=6.1 Score=35.33 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
..-..++..+.+.+.......+++.+...+ ..+...++.++..|++.. .++....++. .++......++..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 344567788888889999999999998876 356667888888887653 4455555542 1122223446777
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH-ANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
+.+.+.++++.-++.+++. |...+..+..+ ++.+.|.+.+++ +.++..|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7778888888888887752 22233333334 778888777765 234556666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=11 Score=36.92 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee---HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT---WSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNVVTLVSLLS 358 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~ 358 (834)
+-.=+..-.+.|++++|.+.|+.+..+.+- +..+ --.++-++.+.+++++|+..+++..+.- -.||. -|..-|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 333344456889999999999999977544 4444 3345567889999999999999988763 33443 3444444
Q ss_pred hhh
Q 003273 359 GCA 361 (834)
Q Consensus 359 a~~ 361 (834)
+.+
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.72 Score=42.58 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHhhcCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 608 LLGRANRLDEAVELIEGM----PM---EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~----~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
-+.+.|++++|..-|... |. +-..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777777666554 21 11234555556667888999999999999999999888888888999999999
Q ss_pred chhHHHHHHHHHhcC
Q 003273 681 WKDVARIRSLMKHTG 695 (834)
Q Consensus 681 ~~~a~~~~~~m~~~~ 695 (834)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998753
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.27 E-value=4.1 Score=41.45 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=68.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHhH---HhcCCCCChHHHHH-
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAP-D----GVTFLVLLYACSHSGMVDQGLKYFDSMS---KEFGISARAEHYAC- 604 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~- 604 (834)
|..++.-.+.++++++.|+...+--... | -..+..|.+.|....++++|.-+..+.. ..+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555566777777777665521111 1 2446677777777777777766554332 22333332222322
Q ss_pred ----HHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 605 ----IVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 605 ----l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
|.-+|-..|.+.+|.+..++.. ..-| ......+...|+..|+.|.|..-|+.+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3334556666666666555431 1122 234455566677777777777777766543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.03 E-value=13 Score=36.43 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=45.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|.+.|....|..-++.+++--|+.+ ..+..+..+|...|..++|.+..+.+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3447888999999999999999877654 45667788899999999999998887654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.7 Score=41.30 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
|+..+|...++++++. .+.|-..+.-.-.+|...|+.+.-...++++.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 4444444444444442 22233444444444444554444444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.96 E-value=2.1 Score=43.39 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CC--ChHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRK-EGLAPD---GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI--SA--RAEH 601 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~ 601 (834)
.|-.+..++.+.-++.+++.+-+.-.. .|..|. .....++..|....+.++++++.|+...+--.- +| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555555555555443332 233332 233445666777778899999999987642211 12 2457
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-H-----HHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCC-
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-------PMEPTP-I-----IWVALLNGCRIHANVELGELAANRLLEL--ESEKD- 665 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~- 665 (834)
|..|..+|++..++++|.-+..+. ..+ |. . +..-+.-+++..|..-.|.+..+.+.++ ...|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 889999999999999887665544 222 21 1 2233444688999988898888887765 22233
Q ss_pred ---chHHHHHHHHHhcCCchhHHHHHHH
Q 003273 666 ---GSYTLLSNIYANAGRWKDVARIRSL 690 (834)
Q Consensus 666 ---~~~~~l~~~~~~~g~~~~a~~~~~~ 690 (834)
.....++++|...|+.|.|..-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 4456899999999998887665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.9 Score=45.44 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=56.4
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+... +..++--+...|+.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HH
T ss_pred HHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCCHH
Confidence 34456677777776654433 556777777777777777777777776654 344444455555555
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
.-.++-......|-. |....++...|++++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~~-------n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGDI-------NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-H-------HHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCH-------HHHHHHHHHcCCHHHHHHHHHH
Confidence 555555554444432 3334444445555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.77 E-value=35 Score=40.86 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=70.4
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHH
Q 003273 317 TWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA 396 (834)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (834)
.|.-.+..--++|.+.+|+.++. |+...+..+..+|+.. ... ...+.-
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~h------------L~~------------~~~~~~ 957 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADH------------LRE------------ELMSDE 957 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHH------------HHH------------hccccH
Confidence 34444444455566666665553 6666666666555421 000 011223
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCccc--HHHHHHHHhhh
Q 003273 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFT--LSCALMACARL 474 (834)
Q Consensus 397 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t--~~~ll~a~~~~ 474 (834)
..-+|.++|+.++|.+.|. .+|++.+|+.+-.++.. .-|... --.+..-+...
T Consensus 958 Aal~Ye~~GklekAl~a~~--------------------~~~dWr~~l~~a~ql~~-----~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYK--------------------ECGDWREALSLAAQLSE-----GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccHHHHHHHHH--------------------HhccHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHc
Confidence 3456777777777765544 34677777777776643 111111 12233333333
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN 527 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~ 527 (834)
+..-+|-++...... + ..-.+..|++...+++|.++-......|
T Consensus 1013 ~kh~eAa~il~e~~s------d---~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS------D---PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred ccchhHHHHHHHHhc------C---HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 333333333222211 1 1234555666667777776665554333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.68 E-value=7.9 Score=42.83 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCcHHH
Q 003273 577 GMVDQGLKYFDSMSKEFGISARAEHYA-CIVDLLGRANRLDEAVELIEGMPM------EPTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~ 649 (834)
...+.+.++++.+.+. -|+...|. --..++...|++++|++.|++.-. +-....+--+...+....++++
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3455666666666532 24433332 223445556667777766665421 1123445566667777888888
Q ss_pred HHHHHHHHHhcCCCCCchH-HHHHHHHHhcCCc-------hhHHHHHHHHHh
Q 003273 650 GELAANRLLELESEKDGSY-TLLSNIYANAGRW-------KDVARIRSLMKH 693 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~m~~ 693 (834)
|...+.++.+...-+...| ...+-+|...|+. ++|.++++++..
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9888888888765444444 4455566777888 777777766643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.27 Score=33.64 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHH
Q 003273 172 VCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIV 211 (834)
Q Consensus 172 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li 211 (834)
++..+...|.+.|++++|+++|++..+..|.|...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4556666666777777777777766666555665555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.3 Score=37.94 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=33.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
+.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|+.=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 45566667777777776666 4543 55666666666666666666666665543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.59 E-value=11 Score=36.47 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCC--hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 266 EEAKKVFERMKVKD--VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 266 ~~A~~~~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
+.|.-+.+++...+ +..|+.-..+|..+|..+-|-..+++.-.. ..+-++++|+++|++-..
T Consensus 75 EqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 75 EQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHH
Confidence 33444444443322 234666778888888888887777665432 223455666666665432
Q ss_pred CCCCCC-----HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh--
Q 003273 344 CGLEPN-----VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA-- 416 (834)
Q Consensus 344 ~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-- 416 (834)
.=..-| ...+..+-+.+.+...+.++-..+..-.......+ ..+.--..+-+.|-.|.-..++..|.+.|+.
T Consensus 139 vve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~-~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 139 VVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD-AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh-hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 100011 11122222333344444443332222111111000 1222223345555566666788888888877
Q ss_pred -cCCCC--CCccchHHHHHHHHhcCChhHHHH
Q 003273 417 -IAPKN--RDVATWTVMIGSYSQNGGANDALA 445 (834)
Q Consensus 417 -~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 445 (834)
++... .+..+...|+.+|- .|+.+++..
T Consensus 218 qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 218 QIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred cCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 33211 24566667777663 344444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.50 E-value=4.2 Score=44.98 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=38.0
Q ss_pred CCHHHHHHHHhhcCC--CChhHHHHHH-HHHHHcCChHHHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHH
Q 003273 511 GDIDTARVVFDNLKQ--RNVVSWTSLM-TGYGMHGLGDKAHWAFDQMRKEG-LAP--DGVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 511 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
...+.|.++++.+.+ |+...|...- ..+...|+.++|++.|++..... -.| ....+.-+.-.+.-.++|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345555566655552 5555444332 22344556666666666544210 001 12233334444445555555555
Q ss_pred HHHHhHH
Q 003273 585 YFDSMSK 591 (834)
Q Consensus 585 ~~~~m~~ 591 (834)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.38 E-value=18 Score=36.83 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=12.8
Q ss_pred HhCCChhHHHHHHHHhhhC
Q 003273 215 AQSGDAEGGLMLFARMTGD 233 (834)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~ 233 (834)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 3567777777777777643
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=4.8 Score=40.55 Aligned_cols=119 Identities=11% Similarity=0.035 Sum_probs=85.5
Q ss_pred hCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhCCChhH
Q 003273 112 RLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSS---GFDSNVFVCNALMAMYARCDTLSY 188 (834)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~~~~~g~~~~ 188 (834)
.+|.+.+|...++++.+. .+.|...+...=.+|.-.|+...-+..++.++-. +++..+++-..+.-.+..||-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467788888888888765 5667667777778888888888777777777643 222223333444445567899999
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhh
Q 003273 189 ARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMT 231 (834)
Q Consensus 189 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 231 (834)
|++.-++..+.++.|..+-.++...+--+|++.++.++..+-.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 9999988887766677777777788888888888888765543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.46 E-value=26 Score=37.06 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCChHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP---DGVTFLVLLYACSHSGMVDQGLKYFDSMSKE-FGISARAEHY 602 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~ 602 (834)
...+|..+...+.+.|+++.|...+.++...+..+ ++.....-.......|+..+|...++...+. ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34466667777777777777777777766633111 2223333344455566677777766665541 1111001011
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 603 ACIVDLLGRANRLDEAVEL-IEGMPMEPTPIIWVALLNGCRIH------ANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
..+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+.+.++.|+....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111100000 00000000 00000000011222222223333 7788889999999999998877777777766
Q ss_pred Hh
Q 003273 676 AN 677 (834)
Q Consensus 676 ~~ 677 (834)
.+
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 53
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.9 Score=43.14 Aligned_cols=79 Identities=10% Similarity=0.203 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhHHH
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-----CGLEPNVVTLV 354 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~ 354 (834)
..++..++..+..+|+++.+...++++....+. |...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456788999999999999999999999998777 888999999999999999999999999875 58888887665
Q ss_pred HHHHh
Q 003273 355 SLLSG 359 (834)
Q Consensus 355 ~ll~a 359 (834)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.54 Score=30.44 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 667 SYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.43 E-value=21 Score=41.01 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=15.6
Q ss_pred HhhcCCHHHHHHHHHhCCCCC
Q 003273 609 LGRANRLDEAVELIEGMPMEP 629 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~p 629 (834)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 567899999999999997767
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.7 Score=43.55 Aligned_cols=80 Identities=8% Similarity=0.128 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhh----CCCCCCCccchHh
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTG----DVKVQGDGVSLVN 245 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~t~~~ 245 (834)
..++..++..+..+|+++.+...++++....+-|...|..+|.+|.++|+...|+..|+++.+ ..|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346788999999999999999999999998888999999999999999999999999999865 2477776655544
Q ss_pred HHHH
Q 003273 246 ALSA 249 (834)
Q Consensus 246 ~l~a 249 (834)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.35 E-value=27 Score=35.58 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=26.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-C--ChhHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCC
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQ-R--NVVSWTSLMTGYGM--HGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
+....+.++.+++.+++.+|.. . ....+..++..+.+ ......|...++.++...+.|.
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4444445556666666665551 1 22334444433311 1223455555555555444444
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.33 E-value=11 Score=34.18 Aligned_cols=88 Identities=18% Similarity=0.053 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcHHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMPM-EPTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~ 649 (834)
.-...++.+++..++..+. -+.|.. ++-..-+-.+.+.|++.+|+.+++++.. .|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3445667777777777775 455652 2333344456778888888888888742 2444555677777765543333
Q ss_pred HHHHHHHHHhcCC
Q 003273 650 GELAANRLLELES 662 (834)
Q Consensus 650 a~~~~~~~~~~~p 662 (834)
=...++.+++..|
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3444555666655
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.24 E-value=10 Score=36.96 Aligned_cols=265 Identities=14% Similarity=0.183 Sum_probs=156.5
Q ss_pred CCCChhhHHHHHHHHH-HhCCChHHHHHHHHhcCCCCCCccch-----HHHHHHHHhcCChhHHHHHHHhhcccC-CCCc
Q 003273 386 SHPDDLMVINALIDMY-AKCKSVDVARVMFDAIAPKNRDVATW-----TVMIGSYSQNGGANDALALFPQMFQQD-KLVK 458 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~-~g~~ 458 (834)
+.+||+..-|..-+.- .+...+++|..-|+++.+.++.-.-| -.||..+.+.|++++.++.|.+|+.-= ..+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455555444322211 23457889999999887655544444 468899999999999999999986300 1111
Q ss_pred --CCcccHHHHHHHHhhhhhHHHHHHHHHHHHHh----CCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 003273 459 --PNAFTLSCALMACARLAALRFGRQIHAYVLRN----QYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ------- 525 (834)
Q Consensus 459 --p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------- 525 (834)
-+..+.++++.-.+-+.+.+.-..++....+. .-+..--.+-+-|...|...|.+.+-.+++.++.+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 13345677777776666666555555443321 00001112335577778888888888877776641
Q ss_pred -CC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHH-----hcCCHHHHHHHHHHhHH
Q 003273 526 -RN-------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDGVTFLVLLYACS-----HSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 526 -~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~ 591 (834)
.| ...|..=|..|....+-.+...+|++.+.-. --|.+ ....+++-|. +.|.+++|..=|-+.-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 2356666777888888888888888876522 12333 3445566554 46788887765554444
Q ss_pred hcCCC--CCh---HHHHHHHHHHhhcCCHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 592 EFGIS--ARA---EHYACIVDLLGRANRLDEAVELIEGM---PM--EPTPIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 592 ~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~---~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
.|.-. |.. --|-.|.+++.+.|- .-|+.- |. .|.....+.|+.+|..+. +..|+++++.+
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd-----I~eFE~Il~~~ 329 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNND-----IIEFERILKSN 329 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhccc-----HHHHHHHHHhh
Confidence 44322 222 235567778887762 112111 33 355667888998887654 34455555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.71 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777888888888888888888774
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.3 Score=44.37 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=62.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGMP-ME-PTPIIWVALLNGCRIHA 645 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g 645 (834)
-.+-|.++|.+++|+..|...+ .+.| ++..+..-..+|.+..++..|+.-.+..- .. .-.-.|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556778888888888887655 4556 67777777778888888877776655442 11 11224444444555567
Q ss_pred cHHHHHHHHHHHHhcCCCCC
Q 003273 646 NVELGELAANRLLELESEKD 665 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~ 665 (834)
+.++|.+-++.+++++|++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 78888888888888888743
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.61 E-value=15 Score=31.78 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
...-+.....+|+-+.-.+++.++.. .-+|++.....+..||.+.|+..++-+++.++-+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445555666666666666666553 2355666666666677777777666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.47 E-value=50 Score=37.53 Aligned_cols=344 Identities=11% Similarity=0.046 Sum_probs=192.1
Q ss_pred HHHhcCChhHHHHHHHHHH--------HCCCCCCHhHHHH-----HHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCCh
Q 003273 324 GYAQRGHGHEALDVFRQMQ--------FCGLEPNVVTLVS-----LLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390 (834)
Q Consensus 324 ~~~~~g~~~~A~~l~~~m~--------~~g~~pd~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (834)
++.+.-++++-+.+.++.. .-|+..+..-|.. ++.-+...+.+..+.++-..+... ... .
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p------~~~-~ 470 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP------ESQ-G 470 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc------ccc-c
Confidence 3445556666555555442 3366666555544 344455555666666655444221 111 1
Q ss_pred hhHHHHHHHHHHhCCC---hHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCc--CCcccHH
Q 003273 391 LMVINALIDMYAKCKS---VDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVK--PNAFTLS 465 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~---~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~--p~~~t~~ 465 (834)
..++.....-+.+..+ -+.+..+=+++...-...++|..+...-.+.|+++-|..+++.=...+..+. -+-.-+.
T Consensus 471 ~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 471 DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 4667777777766632 2334444444542224667888888888888999988888764332111110 1223455
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCC----------CccchhHHhHHHH---------HHHhcCCHHHHHHHHh--hcC
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQY----------EMLIPFVANCLID---------MYSRSGDIDTARVVFD--NLK 524 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~li~---------~y~k~g~~~~A~~~~~--~~~ 524 (834)
..|.-+...|+.+...++.-.+.+.-. .|....+|.-++. .|-. ++-..+...|. ...
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~ 629 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASY 629 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhh
Confidence 666777777777777666555443210 0011222222211 1111 12112221111 100
Q ss_pred -----CCChhHHHHHHHHHHHcCC---hHHH-------HHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 525 -----QRNVVSWTSLMTGYGMHGL---GDKA-------HWAFDQMRK-EGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 525 -----~~~~~~~~~li~~~~~~g~---~~~A-------~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
.+-........+.+++... ..+| +.+.+.+.. .|..-...|.+-.+.-+...|+..+|.++-.+
T Consensus 630 ~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~ 709 (829)
T KOG2280|consen 630 AAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD 709 (829)
T ss_pred hhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh
Confidence 1111122223334444333 1122 222222221 23333455666667778888999999887654
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 589 MSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 589 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
. . .||...|---+.++...+++++-+++-+++. .+.-|.-...+|.+.|+..+|.+.+-++-.+.
T Consensus 710 F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------- 774 (829)
T KOG2280|consen 710 F----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------- 774 (829)
T ss_pred c----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH-------
Confidence 4 2 4788888888899999999999999988875 24556778889999999999988766553332
Q ss_pred HHHHHHHHhcCCchhHHHHHHHH
Q 003273 669 TLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 669 ~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
-...+|.+.|++.+|.+.--+-
T Consensus 775 -ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 775 -EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred -HHHHHHHHhccHHHHHHHHHHh
Confidence 4678899999999998875443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.3 Score=44.06 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=65.1
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCC
Q 003273 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 219 (834)
.+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+.....++... ..-...++..+-+.|.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc------ccCHHHHHHHHHhcch
Confidence 4567777788888888888888877766778899999999999988888888877332 2344567777788888
Q ss_pred hhHHHHHHHHhh
Q 003273 220 AEGGLMLFARMT 231 (834)
Q Consensus 220 ~~~A~~~~~~m~ 231 (834)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 888888888764
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=36 Score=34.69 Aligned_cols=85 Identities=9% Similarity=0.098 Sum_probs=49.5
Q ss_pred HhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCC
Q 003273 273 ERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG----HEALDVFRQMQFCGLEP 348 (834)
Q Consensus 273 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p 348 (834)
+.+..+|..+....+..+...|.. ++...+..+... +|...-...+.++.+.|+. .+++.++..+.... |
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~ 103 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--K 103 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--C
Confidence 334467777888888888877753 344444444332 2555556667777777764 46777777764322 4
Q ss_pred CHhHHHHHHHhhhhh
Q 003273 349 NVVTLVSLLSGCASV 363 (834)
Q Consensus 349 d~~t~~~ll~a~~~~ 363 (834)
|...-...+.++...
T Consensus 104 d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 104 SACVRASAINATGHR 118 (280)
T ss_pred CHHHHHHHHHHHhcc
Confidence 444444444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.3 Score=27.98 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 562 (834)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566667777777777777777777776 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.75 E-value=1.2 Score=28.76 Aligned_cols=28 Identities=18% Similarity=-0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888885554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.53 E-value=2.1 Score=43.06 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhc
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRA 612 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 612 (834)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..=.+.... +.. -...|+.-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999888 778 899999999999999988877765554431 111 122333333333344
Q ss_pred CCHHHHHHHHHhC-CCCCCHH
Q 003273 613 NRLDEAVELIEGM-PMEPTPI 632 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~p~~~ 632 (834)
|+..||.+-++.. ..+|+..
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 5666666655554 4566643
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.36 E-value=22 Score=36.41 Aligned_cols=93 Identities=13% Similarity=0.302 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCC-------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCCC-h-hHHHHHHHHHHhcCC-
Q 003273 513 IDTARVVFDNLKQ-------RNVVSWTSLMTGYGMHGL----GDKAHWAFDQMRKEGLAPD-G-VTFLVLLYACSHSGM- 578 (834)
Q Consensus 513 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~- 578 (834)
...|..+|+.|.+ ++-..+.+|+.. ..++ .+.+..+|+.+.+.|+..+ . .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3455556666652 333445555443 2222 4567778888888888775 3 334444433333222
Q ss_pred -HHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 579 -VDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 579 -~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
+..+.++++.+.+. ++++...+|..++-+
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 44677788888654 888888887765443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.02 E-value=33 Score=34.20 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=50.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...|...|.+.+|.+..++++.++|-+...+-.|.++|+..|+--.+.+-+..+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34588999999999999999999999999999999999999998888887777753
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.80 E-value=22 Score=40.86 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh-------hHHHHHHHHHHHCCCCCCHhH--H
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG-------HEALDVFRQMQFCGLEPNVVT--L 353 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g~~pd~~t--~ 353 (834)
--++|-.+.|+|++++|.++..+.... .......+-..+..|....+. ++...-|++..+.....|++- .
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~Av 192 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAV 192 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 346677788888998888888555433 333456677777777665322 345555666665544335542 2
Q ss_pred HHHHHhhhhhc-hh-hhhhHHHHHHHHHhhhcCCCC-----CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccc
Q 003273 354 VSLLSGCASVG-AL-LLGKETHCYTIKRVLSVDGSH-----PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426 (834)
Q Consensus 354 ~~ll~a~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 426 (834)
-.+|..|--.. .. +.+..+-+++.-+..-..... ..+..++..|=+...+.|. ..|.. +.++..
T Consensus 193 Y~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~----~~~p~~ 263 (613)
T PF04097_consen 193 YKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA----GSNPLL 263 (613)
T ss_dssp HHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT----------
T ss_pred HHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc----chhHHH
Confidence 22333332211 11 111111111111100000011 0112222222111111110 01110 112222
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHH
Q 003273 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506 (834)
Q Consensus 427 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 506 (834)
| ...+.-.|+++.|++.+.+. .+...|.+.+...+.-+.-....+ .....+.......+.+.-+..||..
T Consensus 264 Y---f~~LlLtgqFE~AI~~L~~~----~~~~~dAVH~AIaL~~~gLL~~~~---~~~~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 264 Y---FQVLLLTGQFEAAIEFLYRN----EFNRVDAVHFAIALAYYGLLRVSD---SSSAPLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp H---HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred H---HHHHHHHhhHHHHHHHHHhh----ccCcccHHHHHHHHHHcCCCCCCC---ccccceeeecCCCCCCcCHHHHHHH
Confidence 2 34556789999999998872 446667777666655443222111 1112221111110122345667777
Q ss_pred HHh---cCCHHHHHHHHhhcC
Q 003273 507 YSR---SGDIDTARVVFDNLK 524 (834)
Q Consensus 507 y~k---~g~~~~A~~~~~~~~ 524 (834)
|.+ ..+..+|.+.|--+.
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 775 456777777776665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.46 E-value=30 Score=31.83 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+.++.+...++.|+...|..+|..+.+.|++. .+..++..++-+|.......+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHH
Confidence 345556667788888888888888888888754 455566667777776665444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.21 E-value=3.2 Score=37.50 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=38.7
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...++.+.++.++.-+.-+.|+.+..-..-++++...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45567777777777777777777777777777777777777777777776554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.84 E-value=35 Score=32.04 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH-----HHHHHhhcCCHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDGVTF--LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC-----IVDLLGRANRLDEA 618 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A 618 (834)
+.....+++....-+...-++ ..+...+...|++++|...++.... . |.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555556666653211111222 2334457888999999998886652 1 33333333 44567788999999
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 619 VELIEGMPMEPTPII--WVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+..++... .++-.. -..-...+...|+.++|+..|++.++.+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998875 232222 222334488899999999999999998754
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=84.78 E-value=42 Score=33.76 Aligned_cols=92 Identities=12% Similarity=-0.078 Sum_probs=45.4
Q ss_pred HHhcCChhHHHHHHHHH----HHCCCCCCHhHHHHHHHhhhhhchhh-hhhHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 003273 325 YAQRGHGHEALDVFRQM----QFCGLEPNVVTLVSLLSGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALID 399 (834)
Q Consensus 325 ~~~~g~~~~A~~l~~~m----~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 399 (834)
+.+.|+...|-++-.-| .+.+..+|......++..+.....-+ .-..+...+++.. ...+.-..|+.....+..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHH
Confidence 34444444444433332 23455556555555554444333222 2334444445443 222234457788888999
Q ss_pred HHHhCCChHHHHHHHHhc
Q 003273 400 MYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~ 417 (834)
.|.+.|++.+|+.-|-.-
T Consensus 99 ~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 999999999999877543
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=49 Score=33.69 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCCh----hHHHHHHHhhc
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA----NDALALFPQMF 451 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~ 451 (834)
+|..+....+..+.+.|..+-...+..-+. .+|...-..-+.++.+.|.. .+++.++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 455555566666666665433333333222 44555555556666666653 35666666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=83.97 E-value=62 Score=34.24 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCC-CCccc----hHHHHHHHHh---cCChhHHHHHHHhhcccCCCCcCCcccHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKN-RDVAT----WTVMIGSYSQ---NGGANDALALFPQMFQQDKLVKPNAFTLSC 466 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ 466 (834)
-.|+-.|....+++...++.+.+.... .+... -....-++-+ .|+.++|++++..++. ..-.++..|+..
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~--~~~~~~~d~~gL 222 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE--SDENPDPDTLGL 222 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh--ccCCCChHHHHH
Confidence 355556888899999999999887432 12111 1123344555 7899999999988666 334455555544
Q ss_pred HH
Q 003273 467 AL 468 (834)
Q Consensus 467 ll 468 (834)
+-
T Consensus 223 ~G 224 (374)
T PF13281_consen 223 LG 224 (374)
T ss_pred HH
Confidence 33
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.73 E-value=44 Score=32.32 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=36.0
Q ss_pred HHHHHHHHhhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 602 YACIVDLLGRA-NRLDEAVELIEGMP-----MEPTPIIWVALLNG---CRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 602 ~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+-.+.+.|... .+++.|+..++... .+.+...-..++.+ -...++++.|+.+|+++....-+|+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33455555544 55666666665541 11222223333333 3456788899999999877655544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.69 E-value=4 Score=36.20 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=45.9
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
...++.+.++.++..+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347788888888888888999988888888999999999999999998887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.57 E-value=15 Score=34.35 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=27.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLKQRN------VVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
.+..+.+.|.+.|++++|.+.|.++.+.. +..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555555555555555554221 1233344444444455555444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.49 E-value=15 Score=40.23 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHcCCCHHHHHHHHHHh
Q 003273 288 TGYSRIGSFEDAFALFKKM 306 (834)
Q Consensus 288 ~~~~~~g~~~~A~~l~~~m 306 (834)
-+|...|+++++.+++.+-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 3566678888887776543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.18 E-value=6.1 Score=36.37 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc----hhHHHHHHHHH
Q 003273 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRW----KDVARIRSLMK 692 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~----~~a~~~~~~m~ 692 (834)
+++|+.-++.++.++|+...++..++++|...|.. .+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 45677778888999999999999999999887752 34555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.13 E-value=77 Score=36.02 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=58.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVT---FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
|...+..+.|++.|++.-+ +.|+..+ +..|+.+-.+ .++...++-. + | -.|-.+++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq~-I----g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQQ-I----G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHHH-H----H--------HHHHHHhhccch
Confidence 3344555677888888777 7776433 4444443221 1222222110 0 1 234556788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 615 LDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
++.-.++++-. ..+.+-...+|+..|.+++++++++.|.
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 88777666322 2345555667888899999999998874
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.4 Score=28.00 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHhcCCHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a 582 (834)
...|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.57 E-value=26 Score=32.77 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCC----hH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF--GISAR----AE 600 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~ 600 (834)
..|..+..-|.+.|+.++|++.|.++.+....|. ...+..++..+...+++..+..+..+...-. +-+++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3677888999999999999999999999766666 3457888888999999999999888765321 11122 22
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
.|..+. +...|++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333333 33468999998888766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.45 E-value=3 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666677777776666666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.25 E-value=41 Score=30.95 Aligned_cols=29 Identities=0% Similarity=-0.085 Sum_probs=14.7
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHccCCCc
Q 003273 123 FLQMMRRGWHPDEYTFPFVLKACGELPSS 151 (834)
Q Consensus 123 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 151 (834)
.+.+...+++|+...+..+++.+.+.|..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344445555555555555555555543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=9.8 Score=38.25 Aligned_cols=62 Identities=18% Similarity=0.057 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..++|-.++...++++.|.++.++++.+.|+++.-+--.+-+|.+.|.+..|..=++.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45677778999999999999999999999999988888999999999999999988777654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.00 E-value=53 Score=31.36 Aligned_cols=161 Identities=15% Similarity=0.180 Sum_probs=86.4
Q ss_pred CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHH--HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM--IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 387 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
.|.-+.++|-|.-.+...|+++.|.+.|+...+.+|. .-|..+ .-++.--|++.-|.+-|.+.-+. .|+.. |
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~----D~~DP-f 168 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD----DPNDP-F 168 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhc----CCCCh-H
Confidence 4555678888888888999999999999988755442 112222 12233457788777776666541 22111 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHHcCC
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR-VVFDNLKQRNVVSWTSLMTGYGMHGL 543 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~ 543 (834)
+.++-.+.+..++ ..+|. .+.++....|..-|..-|..|-- |+
T Consensus 169 ----------------R~LWLYl~E~k~d-------------------P~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gk 212 (297)
T COG4785 169 ----------------RSLWLYLNEQKLD-------------------PKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GK 212 (297)
T ss_pred ----------------HHHHHHHHHhhCC-------------------HHHHHHHHHHHHHhccHhhhhHHHHHHHH-hh
Confidence 1122223333222 22232 22233333444445444444332 22
Q ss_pred hHHHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 544 GDKAHWAFDQMRKEGLAPD-------GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 544 ~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
.. ...+|++++.- -.-+ ..||-.+..-+...|++++|..+|+..+.
T Consensus 213 iS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 213 IS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 12233333331 1111 35778888888889999999998887664
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.67 E-value=83 Score=33.46 Aligned_cols=175 Identities=23% Similarity=0.259 Sum_probs=117.5
Q ss_pred hHHHHHHHh--cCCHHHHHHHHhhcC----CCChhHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCCChh----HHHHH
Q 003273 501 NCLIDMYSR--SGDIDTARVVFDNLK----QRNVVSWTSLMTGYG-MHGLGDKAHWAFDQMRKEGLAPDGV----TFLVL 569 (834)
Q Consensus 501 ~~li~~y~k--~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~l 569 (834)
+.|+++..+ .|+.++|.+.+..+. .+....+-+|+.+-. ...+..+|+++|++..- .-|-.. ....-
T Consensus 114 ~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRs 191 (421)
T PRK12798 114 QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRS 191 (421)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHh
Confidence 444444332 699999999999887 345556777776644 45679999999999887 567532 34444
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH-HHHHHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003273 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC-IVDLLGR---ANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHA 645 (834)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 645 (834)
+......|+.+++..+-......|...|-...|.. .+..+.+ .-..+.-..++..|.-.--..+|..+...-...|
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~G 271 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDG 271 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcC
Confidence 45677899999998888877777777776544432 2333333 3344455556666652223557888888889999
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
+.+.|..+.+++..+.+. ...-...+..|...
T Consensus 272 k~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 272 KTELARFASERALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred cHHHHHHHHHHHHHhccC-CCcchHHHHHHHHH
Confidence 999999999999998643 33334455555433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 4e-13
Identities = 27/197 (13%), Positives = 66/197 (33%), Gaps = 22/197 (11%)
Query: 227 FARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK-------VKD 279
+ ++ G L+ C + A + +
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCL---------LTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEAL-DVF 338
+ +NA++ G++R G+F++ + ++ + ++++++A + ++ +
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 339 RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALI 398
QM GL+ + LLS + +K S+ P + L
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATV-----LKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
Query: 399 DMYAKCKSVDVARVMFD 415
D+YAK V ++
Sbjct: 280 DVYAKDGRVSYPKLHLP 296
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 1e-11
Identities = 22/199 (11%), Positives = 57/199 (28%), Gaps = 8/199 (4%)
Query: 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500
+ +A + + P L+ L +L + + Q +
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL- 130
Query: 501 NCLIDMYSRSGDIDTARVVFDNLKQR-------NVVSWTSLMTGYGMHGLGDKAHWAFDQ 553
+ + A + + + + ++M G+ G + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN 613
++ GL PD +++ L ++ + G+ +A A ++ RA
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 614 RLDEAVELIEGMPMEPTPI 632
L ++ + P
Sbjct: 251 VLKAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 2e-05
Identities = 36/280 (12%), Positives = 66/280 (23%), Gaps = 56/280 (20%)
Query: 108 RRAVRLRLPDNAFRLFLQMMRRGWH--PDEYTFPFVLKACGELPSSRCGSSVHAVICSSG 165
R V RL L+ R P E +L+ S + +
Sbjct: 63 RLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQ 122
Query: 166 FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQ----PGICDIVSWNTIVAAYAQSGDAE 221
A D L A L + + +N ++ +A+ G
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-- 180
Query: 222 GGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVK--- 278
+E V +K
Sbjct: 181 -------------------------------------------FKELVYVLFMVKDAGLT 197
Query: 279 -DVVSWNAMVTGYSRIG-SFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALD 336
D++S+ A + R ++M QE +KL + + +++ +
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 337 VFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376
V P V LL + + + H
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 74/563 (13%), Positives = 161/563 (28%), Gaps = 146/563 (25%)
Query: 18 TLNHLFTNIKLFS---VTTTPCIKITSLLLRQC-KSLTQVYLIHQQIIVQNLTHVPPSHL 73
+ L+ + ++F+ V+ L LRQ L + +++ + + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPY----LKLRQALLELRP----AKNVLIDGVLGSGKTWV 166
Query: 74 IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHP 133
+ F +FW N + L + +L Q+
Sbjct: 167 ALD---------VCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSR 216
Query: 134 DEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVF---------VCNA--LMAMYAR 182
+++ R S + S + V NA A
Sbjct: 217 SDHSSN---------IKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 183 CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLM------LFARMTG---- 232
C L R + D +S T + L L +
Sbjct: 266 CKILLTTR-------FKQVTDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 233 DVKVQGDGVSLVNALSACASL-----GTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMV 287
D+ + + LS A TW K ++ + E S N +
Sbjct: 317 DLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVN-CDKLTTIIE-------SSLNVLE 367
Query: 288 TGYSRIGSFEDAFALFKKMRQENVK-----LNVVTWSAVIAGYAQRGHGHEALDVFRQMQ 342
R F+ ++F + L+++ W
Sbjct: 368 PAEYR-KMFDR-LSVF----PPSAHIPTILLSLI-W------------------------ 396
Query: 343 FCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINA-LIDMY 401
+ + V +V ++ + + +I + ++ ++ ++D Y
Sbjct: 397 -FDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 402 AKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ-----QDKL 456
K+ D D + P D + IG + +N + + LF +F + K+
Sbjct: 454 NIPKTFD-----SDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 457 VKPNAFTLSCALMACARLAALRFGRQIHAYVLRN--QYEM----LIPFVANCLIDMY-SR 509
+ ++ + + L L+F + Y+ N +YE ++ F+ ++ S+
Sbjct: 508 -RHDSTAWNASGSILNTLQQLKFYKP---YICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 510 SGDI-------DTARVVFDNLKQ 525
D+ + + + KQ
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 9e-04
Identities = 83/534 (15%), Positives = 155/534 (29%), Gaps = 138/534 (25%)
Query: 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK---CKSV-DVARVMF------DAI 417
G+ + Y K +LSV D + CK V D+ + + I
Sbjct: 11 TGEHQYQY--KDILSV-------------FEDAFVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 418 APKNRDVAT----WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR 473
K+ T WT++ S + Q F ++ L + N L + R
Sbjct: 56 MSKDAVSGTLRLFWTLL--SKQEEM---------VQKFVEEVL-RINYKFLMSPIKTEQR 103
Query: 474 LAALRFGRQIHAY-VLRNQYEMLIP-FVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVS 530
++ I L N ++ V SR R L+ +NV+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNV--------SRLQPYLKLRQALLELRPAKNVLI 155
Query: 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGL---APDGVTFLVLLYACSHSGMVDQGLKYFD 587
G+ G G K A D + + +L L S +++ K
Sbjct: 156 -------DGVLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 588 SMSKEFGISARAEHYACIVDLLGRANRLDEAV-ELIEGMPMEPTPII---------WVAL 637
+ + ++R++H + I R + + + L++ P E ++ W A
Sbjct: 208 QIDPNW--TSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 638 LNGCRI--------HANVELGELAANRLLELES---EKDGSYTLLSNIYANAGRWKDVAR 686
C+I + + L+ S D +LL Y +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLD----CRPQD 317
Query: 687 IRSLMKHT--------GVKKRPG-CSW-----VQGKEGTATF--FVGDRTHPQSQKIYEI 730
+ + T R G +W V + T + + +K+++
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 731 LAGLVQRIKAMGYVPQTSFAL--HDVDDEEKGDLLFEHSEKLALA--------YGILTTA 780
L+ +P +L DV + ++ K +L I
Sbjct: 378 LSVFPPSAH----IPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISI---- 428
Query: 781 PGTPIRITKNLRICGDCHSAITFISMIINHEIILRDSNRFHHFKEGSCTCKGYW 834
P + + L H I++H I + F Y+
Sbjct: 429 PSIYLELKVKLENEYALH------RSIVDHYNIPK---TFDSDDLIPPYLDQYF 473
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 24/204 (11%), Positives = 61/204 (29%), Gaps = 20/204 (9%)
Query: 261 QCGMMEEAKKVFER---MKVKDVVS-WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV 316
+EA ++ER +K + + A +E +++ ++ +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 135
Query: 317 TWSAVIAGYAQRGHGHEALDVF-RQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375
+ + + +F + + +V +L+ ++ +
Sbjct: 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME------YYCSKDKSVAF 189
Query: 376 TI-KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSY 434
I + L + D + A ID + + RV+F+ + + I +
Sbjct: 190 KIFELGLK---KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246
Query: 435 -----SQNGGANDALALFPQMFQQ 453
S G L + + F
Sbjct: 247 FLAFESNIGDLASILKVEKRRFTA 270
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.22 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.11 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.82 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.7 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.59 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.51 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.39 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.25 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.21 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.16 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.15 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.11 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.07 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.06 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.05 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.02 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.0 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.97 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.92 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.91 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.88 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.83 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.82 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.79 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.78 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.7 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.66 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.61 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.36 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.29 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.27 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.23 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.02 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.71 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.62 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.51 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.52 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.42 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.21 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.98 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.58 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.42 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.3 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.67 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.64 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.31 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.15 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.8 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.2 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.21 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.35 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.02 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.53 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.49 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.99 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.77 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.49 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.7 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 84.54 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.75 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.51 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.04 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.99 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.4 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=392.95 Aligned_cols=505 Identities=9% Similarity=-0.054 Sum_probs=341.2
Q ss_pred HHHHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchH
Q 003273 74 IAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRC 153 (834)
Q Consensus 74 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 153 (834)
...+.++|.+..+...|+.++.++. ..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 60 ANNTSTDGSFLKERNAQNTDSLSRE--DYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp C---------------------CHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred cccccccCccCCCCCccccchHHHH--HHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 3445677888888999998887777 9999999999999999999999999985 46788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCC----------------CCCcchHHHHHHHHHhC
Q 003273 154 GSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPG----------------ICDIVSWNTIVAAYAQS 217 (834)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~----------------~~~~~~~~~li~~~~~~ 217 (834)
|..+++.+... ++++.+++.++.+|.++|++++|.++|+++.... +.+..+|+.++.+|.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999988654 6889999999999999999999999999644332 12588999999999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHH-HHhcCC----CChhHHHHHHHHHHc
Q 003273 218 GDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKV-FERMKV----KDVVSWNAMVTGYSR 292 (834)
Q Consensus 218 g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~-~~~~~~----~d~~~~~~li~~~~~ 292 (834)
|++++|+++|++|.+. .|+..+....+..+.... ..+..+.+..+ +..+.. .+..+|+.++.+|.+
T Consensus 214 g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 214 SNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLT------ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSC------HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT
T ss_pred CCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhccc------chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC
Confidence 9999999999999864 455444433333322111 00001111111 222222 234567777888999
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHH
Q 003273 293 IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKET 372 (834)
Q Consensus 293 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 372 (834)
.|++++|.++|+++.+. .++..+|+.++.+|.+.|++++|+++|++|.+.+. .+..++..++.++...|+.++|..+
T Consensus 285 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998875 46888999999999999999999999999887442 1344444555555444544444444
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 373 HCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
+..+.+. .+.+.. +|+.++..|.+.|++++|+++|+++.+
T Consensus 362 ~~~~~~~-------~~~~~~---------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 362 SNDLVDR-------HPEKAV---------------------------------TWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHH-------CTTSHH---------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh-------CcccHH---------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444431 233334 444444444444444444444444433
Q ss_pred cCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChh
Q 003273 453 QDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVV 529 (834)
Q Consensus 453 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~ 529 (834)
..| .+...++.++.+|.+.|++++|.++|+++. ..+..
T Consensus 402 ----~~~-----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 402 ----MDP-----------------------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp ----HCT-----------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred ----hCC-----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 111 233344455555555555555555555443 23556
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISAR--AEHYA 603 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~ 603 (834)
+|+.++.+|.+.|++++|+++|++|.+. .| +..+|..++..|.+.|++++|.++|+.+.+.. +..|+ ..+|.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 6777777777777777777777777763 33 46667777777777777777777777765432 55666 67788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 604 CIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
.++.+|.+.|++++|.+.++++ .. +.+..+|..+..+|...|+.++|.+.++++++++|+++.++..|+++|..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8888888888888888888776 22 24678999999999999999999999999999999999999999988753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=379.43 Aligned_cols=483 Identities=10% Similarity=-0.004 Sum_probs=387.1
Q ss_pred HHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhh
Q 003273 180 YARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRG 259 (834)
Q Consensus 180 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~ 259 (834)
+.++|.+..+...++.++.. ++..|+.++..|.+.|++++|+.+|++|. +..|+..++..+..+|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~-------- 128 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLS---REDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYC-------- 128 (597)
T ss_dssp -------------------C---HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHH--------
T ss_pred ccccCccCCCCCccccchHH---HHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHH--------
Confidence 45567777777777777666 77888888888888888888888888887 34567777777777777
Q ss_pred hhcCcHHHHHHHHHhc--CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc---------------CCCCCeeeHHHHH
Q 003273 260 KQCGMMEEAKKVFERM--KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE---------------NVKLNVVTWSAVI 322 (834)
Q Consensus 260 ~~~g~~~~A~~~~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------------g~~p~~~~~~~li 322 (834)
+.|++++|..+|+.+ ..++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++
T Consensus 129 -~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 129 -CTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp -HTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred -HcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 677788888888877 4678889999999999999999999999853322 2334678999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHhhhhhchhhhh--hHH-HHHHHHHhhhcCCCCCChhhHHHHHH
Q 003273 323 AGYAQRGHGHEALDVFRQMQFCGLEPNV-VTLVSLLSGCASVGALLLG--KET-HCYTIKRVLSVDGSHPDDLMVINALI 398 (834)
Q Consensus 323 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~~~~~li 398 (834)
.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+..+.. ..+ +..+... +......+++.++
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE------DAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG------GHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc------hHHHHHHHHHHHH
Confidence 99999999999999999999854 443 3344444333322222111 111 2222222 3334455677789
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
.+|.+.|++++|.++|+++....++..+|+.++.+|.+.|++++|+++|++|.+ .+ ..+..++..++.++...|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE--ID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--cC-cccHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999985557999999999999999999999999999987 22 236678999999999999999
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
+|..++..+.+... .+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 357 ~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 357 KLYLISNDLVDRHP--EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHCT--TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999997653 678899999999999999999999999886 3568899999999999999999999999999
Q ss_pred HcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC
Q 003273 556 KEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-------PM 627 (834)
Q Consensus 556 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 627 (834)
+. .| +..+|..++.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ +.
T Consensus 435 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 435 RL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred Hh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 84 45 6889999999999999999999999999853 3346889999999999999999999999987 34
Q ss_pred CCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 628 EPT--PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 628 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+ ..+|..++.+|...|+.++|+..++++++++|+++.+|..++++|...|++++|.+.++++.+.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 677 7799999999999999999999999999999999999999999999999999999999999875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-27 Score=253.37 Aligned_cols=375 Identities=11% Similarity=0.109 Sum_probs=281.9
Q ss_pred HHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCch
Q 003273 178 AMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWS 257 (834)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~ 257 (834)
..+.+.|++++|.+.|+++....|.+...+..+...+.+.|++++|...++...+.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------------------ 62 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------------------ 62 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------
Confidence 34445566666666665555444445555555555566666666665555544321
Q ss_pred hhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHH
Q 003273 258 RGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV 337 (834)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 337 (834)
...+...|..+...|.+.|++++|...|+++....+. +..+|..+..++.+.|++++|++.
T Consensus 63 ------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 63 ------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1234556677777777777777777777777665332 444567777777777777777777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhc
Q 003273 338 FRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 338 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 417 (834)
|+++.+. .|.+..++..+...|...|++++|.+.|+++
T Consensus 124 ~~~al~~------------------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 124 YVSALQY------------------------------------------NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHH------------------------------------------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHh------------------------------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7766542 2333445566777777788888888888777
Q ss_pred CCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccc
Q 003273 418 APKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI 496 (834)
Q Consensus 418 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 496 (834)
....| +..+|+.+...|.+.|++++|+..|+++++ ..| .+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p-----------------------------------~~ 202 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT----LDP-----------------------------------NF 202 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCT-----------------------------------TC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCC-----------------------------------Cc
Confidence 65455 467788888888888888888888888876 344 34
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYA 572 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 572 (834)
+..+..+...|...|++++|...|++.. .| +..+|..+...|...|++++|+..|+++.+ ..|+ ..++..+..+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHH
Confidence 4556777888888899999998888775 33 577899999999999999999999999998 5675 7789999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 650 (834)
+...|++++|..+|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999863 4557888999999999999999999999987 3334 477899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
...++++++++|+++.+|..++.+|...|+
T Consensus 359 ~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-25 Score=238.32 Aligned_cols=352 Identities=14% Similarity=0.085 Sum_probs=267.4
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhh
Q 003273 288 TGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALL 367 (834)
Q Consensus 288 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 367 (834)
..+.+.|++++|.+.++++.+..+. +...+..+...+.+.|++++|...++...+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~------------------------ 61 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------------ 61 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------
Confidence 3455667777777777666655433 444555555666666777766666666554
Q ss_pred hhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcCChhHHHHH
Q 003273 368 LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNGGANDALAL 446 (834)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l 446 (834)
..|.+..++..+...|.+.|++++|...|+++....|+ ..+|..+...|.+.|++++|++.
T Consensus 62 ------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 62 ------------------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp ------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ------------------cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23444555556666666666666666666655443443 33566666666666666666666
Q ss_pred HHhhcccCCCCcCCccc-HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-
Q 003273 447 FPQMFQQDKLVKPNAFT-LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK- 524 (834)
Q Consensus 447 ~~~m~~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~- 524 (834)
|+++.+ ..|+..+ +..+...+...|++++|...+..+.+... .+...++.+...|.+.|++++|...|+++.
T Consensus 124 ~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 124 YVSALQ----YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHH----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666655 4455443 33334445555666666666666665432 567788899999999999999999999987
Q ss_pred -CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChH
Q 003273 525 -QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAE 600 (834)
Q Consensus 525 -~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 600 (834)
.| +...|..+...+...|++++|+..|++..+ ..|+ ..++..+..++...|++++|...|+.+.+ +.| +..
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 272 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPD 272 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHH
Confidence 33 567899999999999999999999999998 5676 78899999999999999999999999975 344 477
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
.|..++.+|.+.|++++|.+.++++. .+++..+|..+...+...|+.++|...+++++++.|++..++..++.+|...
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 89999999999999999999999872 2356889999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHh
Q 003273 679 GRWKDVARIRSLMKH 693 (834)
Q Consensus 679 g~~~~a~~~~~~m~~ 693 (834)
|++++|.+.++++.+
T Consensus 353 g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 353 GKLQEALMHYKEAIR 367 (388)
T ss_dssp TCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=259.88 Aligned_cols=209 Identities=12% Similarity=0.108 Sum_probs=159.8
Q ss_pred HHHHHHHHHHcCCCCCcc-cHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---------hhH
Q 003273 119 AFRLFLQMMRRGWHPDEY-TFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT---------LSY 188 (834)
Q Consensus 119 a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~---------~~~ 188 (834)
+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334445555555444332 3666667777777777777777777777777777777777777765544 677
Q ss_pred HHHHHHhcCCCCC-CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHH
Q 003273 189 ARQLFDEMFQPGI-CDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEE 267 (834)
Q Consensus 189 A~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~ 267 (834)
|.++|++|...|+ ||.++||+||.+|++.|++++|+++|++|.+. |+.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~------------------------------ 137 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQ------------------------------ 137 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCC------------------------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------------------------------
Confidence 8888888888875 68888888888888888888888888888876 554
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003273 268 AKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE 347 (834)
Q Consensus 268 A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 347 (834)
||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..
T Consensus 138 ----------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 138 ----------PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp ----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred ----------CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCC
Confidence 5667778888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHhhhhhchhhh
Q 003273 348 PNVVTLVSLLSGCASVGALLL 368 (834)
Q Consensus 348 pd~~t~~~ll~a~~~~~~~~~ 368 (834)
|+..||+.++..|+..+....
T Consensus 208 ps~~T~~~l~~~F~s~~a~~~ 228 (501)
T 4g26_A 208 VSKSTFDMIEEWFKSEVATKT 228 (501)
T ss_dssp BCHHHHHHHHHHHHSHHHHTC
T ss_pred cCHHHHHHHHHHHhcCcchhh
Confidence 999999999999887654433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=254.21 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=181.1
Q ss_pred HHHHHHHhcCCCCCC--CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcH
Q 003273 188 YARQLFDEMFQPGIC--DIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265 (834)
Q Consensus 188 ~A~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~ 265 (834)
.+..++.++.+++.. ....++.+|.+|++.|++++|+++|++|.+. |++||.+||+++|.+|+..+....+.+.+.+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445555666666542 2345788889999999999999999999888 9999999999999999887776666677889
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 003273 266 EEAKKVFERMK----VKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQM 341 (834)
Q Consensus 266 ~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 341 (834)
++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999986 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhC
Q 003273 342 QFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKC 404 (834)
Q Consensus 342 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 404 (834)
.+.|+.||..||+++|.+|++.|++++|.+++..+... +..|+..+++.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~------g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL------VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh------CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 9999999999999998763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=223.70 Aligned_cols=326 Identities=14% Similarity=0.107 Sum_probs=263.7
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 278 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+...|..+...|.+.|++++|..+|+++.+..+. +..+|..+...|.+.|++++|+..|+++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 89 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence 36778899999999999999999999999887544 7788899999999999999999999998763
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc----cchHHHHHH
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV----ATWTVMIGS 433 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~ 433 (834)
.+.+..++..++.+|.+.|++++|...|+++....|+. ..|..++..
T Consensus 90 -----------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 90 -----------------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 23345667778888888888888888888887655543 555555443
Q ss_pred ------------HHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHh
Q 003273 434 ------------YSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVAN 501 (834)
Q Consensus 434 ------------~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 501 (834)
|.+.|++++|+..|+++.+ ..| .++.++.
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~ 181 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILE----VCV-----------------------------------WDAELRE 181 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC-----------------------------------CChHHHH
Confidence 5666666666666666654 222 5667778
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHH--------
Q 003273 502 CLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VTFLVL-------- 569 (834)
Q Consensus 502 ~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l-------- 569 (834)
.+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+. ..+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 89999999999999999999886 45788999999999999999999999999998 56764 334443
Q ss_pred ----HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003273 570 ----LYACSHSGMVDQGLKYFDSMSKEFGISAR-----AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALL 638 (834)
Q Consensus 570 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 638 (834)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|++.++++ ...| +...|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 78899999999999999999853 344 558999999999999999999999987 3334 688999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHhcC-----CchhHHHHHHH
Q 003273 639 NGCRIHANVELGELAANRLLELESEKDGSYTLLS------------NIYANAG-----RWKDVARIRSL 690 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 690 (834)
.+|...|++++|...++++++++|+++.++..++ +.|...| +.+++++.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 5566667 34455555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-22 Score=223.70 Aligned_cols=433 Identities=10% Similarity=0.003 Sum_probs=291.4
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHH
Q 003273 204 IVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSW 283 (834)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~ 283 (834)
+..|......+.+.|++++|+..|+++... .||...|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------------------------------~p~~~~~ 42 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-------------------------------------------KEDPVFY 42 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-------------------------------------------CCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-------------------------------------------CccHHHH
Confidence 445777788888899999999998888754 2455666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhh
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASV 363 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 363 (834)
..+..+|.+.|++++|...|+++.+.++. +..+|..+..+|.+.|++++|+..|+++...+. ++......++..+...
T Consensus 43 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 120 (514)
T 2gw1_A 43 SNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNK 120 (514)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH
Confidence 77777777778888888888777776544 556777777788888888888888887777653 3333333333333332
Q ss_pred chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHH---HHHHHHhCCChHHHHHHHHhcCCC-------CC-CccchHHHHH
Q 003273 364 GALLLGKETHCYTIKRVLSVDGSHPDDLMVINA---LIDMYAKCKSVDVARVMFDAIAPK-------NR-DVATWTVMIG 432 (834)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~~~~-------~~-~~~~~~~li~ 432 (834)
.......+.+..+... +..++...... .............+...+...... .| +...|.....
T Consensus 121 ~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 121 QAMSKLKEKFGDIDTA------TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHTTC---------------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 2222222211111000 00000000000 000000000011111111111100 01 1233333333
Q ss_pred HHHh---cCChhHHHHHHHhhcc-----c--CCCC----cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchh
Q 003273 433 SYSQ---NGGANDALALFPQMFQ-----Q--DKLV----KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPF 498 (834)
Q Consensus 433 ~~~~---~g~~~~A~~l~~~m~~-----~--~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 498 (834)
.+.. .|++++|+..|+++.+ . .... ..+..++..+...+...|+++.|...+..+.+... . ..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~-~~ 271 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--R-VN 271 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--C-HH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--c-HH
Confidence 3333 6777777777777654 1 0000 11233455556666677777777777777776553 3 77
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS 574 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 574 (834)
.+..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ..++..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHH
Confidence 78888999999999999999999876 34677899999999999999999999999998 4564 678888999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM----PMEPT----PIIWVALLNGCRI--- 643 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~--- 643 (834)
..|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..++ ...|..+...+..
T Consensus 350 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999998753 2335678889999999999999999999876 22222 4488899999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+.+.|...++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=221.11 Aligned_cols=447 Identities=10% Similarity=-0.023 Sum_probs=283.8
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCC
Q 003273 140 FVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGD 219 (834)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 219 (834)
.....+...|++++|...+..+++.. |+..++..+..+|.+.|++++|...|+++.+.++.+..+|..+..+|.+.|+
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 33444555566666666666666553 4666666777777777777777777776665555566677777777777777
Q ss_pred hhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHH
Q 003273 220 AEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDA 299 (834)
Q Consensus 220 ~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 299 (834)
+++|+..|+++... + .++.......+..+.. ...... +
T Consensus 89 ~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~---------~~~~~~-------------------------------~ 126 (514)
T 2gw1_A 89 FADAMFDLSVLSLN-G-DFNDASIEPMLERNLN---------KQAMSK-------------------------------L 126 (514)
T ss_dssp HHHHHHHHHHHHHS-S-SCCGGGTHHHHHHHHH---------HHHHHH-------------------------------H
T ss_pred HHHHHHHHHHHHhc-C-CCccchHHHHHHHHHH---------HHHHHH-------------------------------H
Confidence 77777777777654 2 1222222222222210 000000 1
Q ss_pred HHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--------CC-HhHHHHHHHhhh---hhchhh
Q 003273 300 FALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLE--------PN-VVTLVSLLSGCA---SVGALL 367 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd-~~t~~~ll~a~~---~~~~~~ 367 (834)
.+.+..+...+..|+...++.................+...+...... |+ ...+......+. ..|+++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
T 2gw1_A 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206 (514)
T ss_dssp TTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred HHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH
Confidence 111110000000001110000000000000111111111111110000 22 222222222222 367788
Q ss_pred hhhHHHHHHHHHh---hhcCCC----CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCCh
Q 003273 368 LGKETHCYTIKRV---LSVDGS----HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGA 440 (834)
Q Consensus 368 ~a~~~~~~~~~~~---~~~~~~----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 440 (834)
.|...+..+++.. ....+. .+.+..++..+...|.+.|++++|...|+++....|+...|..+...|...|++
T Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCH
Confidence 8888877777621 000001 134567788899999999999999999998875556677788889999999999
Q ss_pred hHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHH
Q 003273 441 NDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVF 520 (834)
Q Consensus 441 ~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 520 (834)
++|+..|+++.. ..| .+..++..+...|.+.|++++|...|
T Consensus 287 ~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 287 TEYYNYFDKALK----LDS-----------------------------------NNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp TTGGGHHHHHHT----TCT-----------------------------------TCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHhh----cCc-----------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999876 334 34455677788888888888888888
Q ss_pred hhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 003273 521 DNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596 (834)
Q Consensus 521 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 596 (834)
+++. ..+...|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+++.+.+...-.
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 8775 345678888888999999999999999999884 454 6778888889999999999999999887543333
Q ss_pred CC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 597 AR----AEHYACIVDLLGR---ANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 597 p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
++ ...+..+...|.+ .|++++|.+.++++ ... .+..+|..+...+...|+.+.|...+++++++.|+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 33 4478889999999 99999999999887 222 357788899999999999999999999999999988777
Q ss_pred HHHH
Q 003273 668 YTLL 671 (834)
Q Consensus 668 ~~~l 671 (834)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-21 Score=212.95 Aligned_cols=376 Identities=11% Similarity=0.040 Sum_probs=235.8
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHH
Q 003273 191 QLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKK 270 (834)
Q Consensus 191 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~ 270 (834)
..|.+.....+.+...|..++..|.+.|++++|+.+|+++.+.
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------------------------- 55 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG------------------------------------- 55 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------------------
Confidence 3334444444446677777777777788888887777777542
Q ss_pred HHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 003273 271 VFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNV 350 (834)
Q Consensus 271 ~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 350 (834)
...+..+|..+...|.+.|++++|...|+++.+.++. +..+|..+...|.+.|++++|++.|+++.+.. |+.
T Consensus 56 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 127 (450)
T 2y4t_A 56 -----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSE 127 (450)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCH
T ss_pred -----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 1234566777777777888888888888887776544 56677778888888888888888888887643 433
Q ss_pred ----hHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-Ccc
Q 003273 351 ----VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVA 425 (834)
Q Consensus 351 ----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~ 425 (834)
..+..+...+.. ..+..+...|.+.|++++|...|+++....| +..
T Consensus 128 ~~~~~~~~~l~~~~~~-----------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEM-----------------------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 233333222111 1233455678889999999999999875555 677
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHH
Q 003273 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505 (834)
Q Consensus 426 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 505 (834)
.|..++..|.+.|++++|++.|+++.+ ..| .++.++..+..
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~l~~ 219 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASK----LKN-----------------------------------DNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHH----HHC-----------------------------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-----------------------------------CCHHHHHHHHH
Confidence 899999999999999999999999986 333 23344455555
Q ss_pred HHHhcCCHHHHHHHHhhcC--CC-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----hhH
Q 003273 506 MYSRSGDIDTARVVFDNLK--QR-NVVSWTSL------------MTGYGMHGLGDKAHWAFDQMRKEGLAPD-----GVT 565 (834)
Q Consensus 506 ~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t 565 (834)
.|.+.|++++|...|+++. .| +...|..+ ...+...|++++|+..|+++.+ +.|+ ...
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~ 297 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRS 297 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHH
Confidence 5555555555555555544 22 22333333 5666677777777777777766 3454 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH---
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNG--- 640 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~--- 640 (834)
+..+..++.+.|++++|..+++.+.+. .+.+...|..+..+|.+.|++++|.+.++++ ...|+ ...|..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 566666677777777777777766532 1224566777777777777777777777665 33343 4445444422
Q ss_pred ---------HHhcC-----cHHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCchh
Q 003273 641 ---------CRIHA-----NVELGELAANR-LLELESEKDG----------SYTLLSNIYANAGRWKD 683 (834)
Q Consensus 641 ---------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 683 (834)
|...| +.+++.+.+++ +++.+|++.. .+..+..+|...|+.+.
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22333 55677888886 7788887432 34445555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-21 Score=216.40 Aligned_cols=423 Identities=12% Similarity=0.061 Sum_probs=255.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHH
Q 003273 170 VFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSA 249 (834)
Q Consensus 170 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a 249 (834)
...+..+...|.+.|++++|...|+++....+.+..+|..+..+|.+.|++++|++.|+++.+. .
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~------------ 89 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI---K------------ 89 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C------------
Confidence 3456677777888888888888888877666667778888888888888888888888877643 1
Q ss_pred hhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcC
Q 003273 250 CASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRG 329 (834)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 329 (834)
..+...+..+...|...|++++|...|+.+ .. +....+..+..+...+
T Consensus 90 ---------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~~~~~~~~~ 137 (537)
T 3fp2_A 90 ---------------------------PDHSKALLRRASANESLGNFTDAMFDLSVL-SL----NGDFDGASIEPMLERN 137 (537)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHH
T ss_pred ---------------------------CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc----CCCCChHHHHHHHHHH
Confidence 234556677777788888888888888533 22 2222233344555556
Q ss_pred ChhHHHHHHHHHHHC------CCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHh
Q 003273 330 HGHEALDVFRQMQFC------GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK 403 (834)
Q Consensus 330 ~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 403 (834)
...+|+..++++... ...|+...+...+..+. ...+. ..........+........+...|..
T Consensus 138 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (537)
T 3fp2_A 138 LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD----SHLEV-------SSVNTSSNYDTAYALLSDALQRLYSA 206 (537)
T ss_dssp HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC----HHHHH-------HTSCCCCSSCSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC----hHHHH-------HHHhhccccccHHHHHHHHHHHHHHh
Confidence 667777777777542 22233333333222111 10000 00000000111112233333333322
Q ss_pred C--------CChHHHHHHHHhcCCCCCCc--------cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHH
Q 003273 404 C--------KSVDVARVMFDAIAPKNRDV--------ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467 (834)
Q Consensus 404 ~--------g~~~~A~~~f~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l 467 (834)
. |++++|..+|+++....|+. .+|..+...+...|++++|+..|+
T Consensus 207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~------------------- 267 (537)
T 3fp2_A 207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ------------------- 267 (537)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH-------------------
Confidence 2 24444555555444333321 123333344444444444444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 003273 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG 544 (834)
Q Consensus 468 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 544 (834)
.+.+.. ++...+..+...|.+.|++++|...|+++. ..+..+|..+...+...|++
T Consensus 268 ------------------~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 268 ------------------ESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp ------------------HHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------HHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence 444432 224555666777777777777777777665 33566777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003273 545 DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIE 623 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (834)
++|+..|+++.+ ..|+ ..++..+..++...|++++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++
T Consensus 327 ~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 327 KNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888777 3454 566777777788888888888888877653 23345677777888888888888888777
Q ss_pred hC----CCCC----CHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 624 GM----PMEP----TPIIWVALLNGCRIH----------ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 624 ~~----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
++ +..+ ....+..+...+... |+++.|...++++++..|+++.++..++.+|...|++++|.
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 65 1111 122344444556666 88888888888888888888888888889999899999988
Q ss_pred HHHHHHHhc
Q 003273 686 RIRSLMKHT 694 (834)
Q Consensus 686 ~~~~~m~~~ 694 (834)
+.++.+.+.
T Consensus 483 ~~~~~al~~ 491 (537)
T 3fp2_A 483 ELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-20 Score=212.04 Aligned_cols=236 Identities=11% Similarity=0.089 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 393 VINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 393 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
++..+...|...|++++|...|+++....|+...|..+...|...|++++|+..|+++.+ ..|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~------------- 307 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVD----LNP------------- 307 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH----HCT-------------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc----cCC-------------
Confidence 567778889999999999999999987678888899999999999999999999999876 334
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 549 (834)
.++.++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+.
T Consensus 308 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 308 ----------------------EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445566778888888899999998888776 3456788889999999999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhc----------CC
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA----RAEHYACIVDLLGRA----------NR 614 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~----------g~ 614 (834)
.|+++.+. .|+ ...+..+...+...|++++|...|+.+.+...-.+ ....+..+..+|.+. |+
T Consensus 366 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 99999884 565 67788888899999999999999998765321111 123345556777787 99
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 615 LDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 615 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
+++|.+.++++ ... .+...|..+...+...|+.+.|...+++++++.|++.....
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999887 223 45778999999999999999999999999999998765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=185.49 Aligned_cols=316 Identities=13% Similarity=0.062 Sum_probs=224.6
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003273 279 DVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLS 358 (834)
Q Consensus 279 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 358 (834)
|+..+..+...+.+.|++++|...|+++.+..+. +..+|..+...+...|++++|+..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL-------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------
Confidence 3456777778888888888888888888776554 5667777888888888888888888877653
Q ss_pred hhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC---C-ccchHHH----
Q 003273 359 GCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR---D-VATWTVM---- 430 (834)
Q Consensus 359 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~-~~~~~~l---- 430 (834)
.|.+..++..+...|.+.|++++|...|+++....| + ...|..+
T Consensus 67 ----------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (359)
T 3ieg_A 67 ----------------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118 (359)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence 222334555666666666777777777666654444 2 2223322
Q ss_pred --------HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 431 --------IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 431 --------i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
...+...|++++|++.|+++.+ ..| .++.++..
T Consensus 119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~ 159 (359)
T 3ieg_A 119 EMQRLRSQALDAFDGADYTAAITFLDKILE----VCV-----------------------------------WDAELREL 159 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC-----------------------------------CchHHHHH
Confidence 3556666666666666666654 223 45566677
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHH-----------
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFL----------- 567 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~----------- 567 (834)
+...|.+.|++++|...|+++. ..+...|..+...|...|++++|...|++..+ ..|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHH
Confidence 8888888888888888888776 34667888888888899999999999999888 4565 33322
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003273 568 -VLLYACSHSGMVDQGLKYFDSMSKEFGISARA--EHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCR 642 (834)
Q Consensus 568 -~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 642 (834)
.+...+...|++++|...++.+.+...-.+.. ..+..+..+|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 22556888899999999998887542211111 33556778888899999999888877 2233 5778888888888
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 643 IHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 643 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
..|+.++|...++++++++|+++.++..|..++...
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 899999999999999999998888887777776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-18 Score=179.21 Aligned_cols=306 Identities=12% Similarity=0.038 Sum_probs=239.6
Q ss_pred eeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHH
Q 003273 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394 (834)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (834)
+..|..+...+...|++++|+..|+++.+ ..|.+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------------------------------~~p~~~~~~ 40 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVD------------------------------------------GDPDNYIAY 40 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------HCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------------------------hCcccHHHH
Confidence 34566677777778888888888877765 234455677
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcC---CcccHHHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKP---NAFTLSCALMA 470 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p---~~~t~~~ll~a 470 (834)
..+...|...|++++|...|+++....| +...|..+...|...|++++|+..|+++.+ ..| +.......+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l-- 114 (359)
T 3ieg_A 41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQL-- 114 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHH--
Confidence 7788888889999999999988775555 567788888999999999999999999977 455 222111111
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHH
Q 003273 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKA 547 (834)
Q Consensus 471 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 547 (834)
+.. ........+...|...|++++|...|+++. ..+...|..+...+...|++++|
T Consensus 115 ----~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 115 ----VKA-----------------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp ----HHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHH-----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 111 011122345678899999999999999886 45677899999999999999999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHH------------HHHHHHhhcC
Q 003273 548 HWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYA------------CIVDLLGRAN 613 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~------------~l~~~~~~~g 613 (834)
+..++++.+ ..|+ ..++..+...+...|++++|...|+...+. .|+ ...+. .+...+.+.|
T Consensus 174 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999998 4564 788999999999999999999999998753 333 22222 3377799999
Q ss_pred CHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 614 RLDEAVELIEGM-PMEPT-P----IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 614 ~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
++++|.+.++++ ...|+ . ..|..+...+...|+.+.|...++++++.+|+++.++..++.+|...|++++|.+.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328 (359)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999887 22333 3 23555777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 003273 688 RSLMKHT 694 (834)
Q Consensus 688 ~~~m~~~ 694 (834)
++.+.+.
T Consensus 329 ~~~a~~~ 335 (359)
T 3ieg_A 329 YEAAQEH 335 (359)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9998764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-14 Score=165.03 Aligned_cols=295 Identities=12% Similarity=0.098 Sum_probs=185.0
Q ss_pred hHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHH
Q 003273 351 VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVM 430 (834)
Q Consensus 351 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~l 430 (834)
.-......++...|...++.++++.++.. ...+..+....+.|+.+..+. +..+..+...+.. . .....+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~----~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--~---~d~~eI 1055 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLD----NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--N---YDAPDI 1055 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcC----CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--h---ccHHHH
Confidence 34466778888899999999999988843 112334556667777666666 3444555444443 1 113446
Q ss_pred HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHH-hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh
Q 003273 431 IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMAC-ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509 (834)
Q Consensus 431 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 509 (834)
...+...|.+++|..+|++... +...+..+ ...++++.|.++...+ .++.+|..+..++.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----------~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----------NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHh
Confidence 6677777888888888877532 11111222 2556677777766543 456677777777777
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--------------------------CCCh
Q 003273 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL--------------------------APDG 563 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------------------~p~~ 563 (834)
.|++++|.+.|.+. .|...|..++..+.+.|++++|++.+...++..- .|+.
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ 1195 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN 1195 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH
Confidence 77777777777664 5666677777777777777777777766554221 1233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI 643 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 643 (834)
..|..+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++.. +..+|.....+|..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~---n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC---CHHHHHHHHHHHhh
Confidence 33444555555555555555555543 246666666666666666666666553 45666666666666
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 644 HANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
.|++..|...... +.. ++..+..++..|.+.|.|++|..+++...
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred hhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666665443 222 34567788889999999999999986654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=175.12 Aligned_cols=182 Identities=13% Similarity=0.076 Sum_probs=125.8
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYAC 573 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 573 (834)
..+..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ...+..+...+
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVA 203 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Confidence 334455555555555555555555544 22345566666667777777777777777766 4454 56667777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 003273 574 SHSGMVDQGLKYFDSMSKEFG-------ISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIH 644 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~ 644 (834)
...|++++|..+++.+.+... .+.....+..+..+|.+.|++++|.+.+++. .. +.+...|..+...+...
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh
Confidence 777777777777776654321 1333567778888888888888888888776 11 23567888888889999
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIY-ANAGRW 681 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 681 (834)
|+.++|...+++++++.|+++.++..++.+| ...|+.
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999888 455554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-14 Score=163.73 Aligned_cols=417 Identities=12% Similarity=0.112 Sum_probs=314.4
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHH
Q 003273 138 FPFVLKACGELPSSRCGSSVHAVICSSG--FDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYA 215 (834)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~ 215 (834)
-....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +........++.... + ...+...+.
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~---d---~~eIA~Iai 1060 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY---D---APDIANIAI 1060 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---c---HHHHHHHHH
Confidence 4567888889999999999999998432 234567788888888777 556666666665533 3 455788899
Q ss_pred hCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCC
Q 003273 216 QSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGS 295 (834)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~ 295 (834)
..|.+++|..+|++.... ......++. ..+++++|.++.++. .+..+|..+..++.+.|+
T Consensus 1061 ~lglyEEAf~IYkKa~~~------~~A~~VLie------------~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVN------TSAVQVLIE------------HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred hCCCHHHHHHHHHHcCCH------HHHHHHHHH------------HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC
Confidence 999999999999986311 111222222 457899999998876 457889999999999999
Q ss_pred HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHH
Q 003273 296 FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCY 375 (834)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 375 (834)
+++|.+.|.+. . |...|..++..+.+.|++++|++.|....+.. ++....+.+..+|++.++++....+
T Consensus 1121 ~kEAIdsYiKA--d----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc--C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence 99999999775 2 88899999999999999999999999877754 3433344588888988877743333
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCC
Q 003273 376 TIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDK 455 (834)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 455 (834)
++ .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++..
T Consensus 1190 -I~---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1190 -IN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred -Hh---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 22 234455667999999999999999999986 389999999999999999999999874
Q ss_pred CCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHH
Q 003273 456 LVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWT 532 (834)
Q Consensus 456 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~ 532 (834)
+..+|..+-.+|...+.+..|....-.+. .++..+..++..|.+.|.+++|..+++.... .....|+
T Consensus 1249 ----n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1249 ----STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred ----CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 34778888899999999999888765432 5667778999999999999999999998863 3455777
Q ss_pred HHHHHHHHc--CChHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHh----------HHhcC
Q 003273 533 SLMTGYGMH--GLGDKAHWAFDQMRKEGLAP------DGVTFLVLLYACSHSGMVDQGLKYFDSM----------SKEFG 594 (834)
Q Consensus 533 ~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~~~~m----------~~~~~ 594 (834)
-+...|++. ++..+++++|..-.. +.| +...|.-+...|.+.|+++.|....-.- .....
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 777777765 456677777775433 444 3566888888999999999988322111 00112
Q ss_pred CCCChHHHHHHHHHHhhcC---------------CHHHHHHHHHhC
Q 003273 595 ISARAEHYACIVDLLGRAN---------------RLDEAVELIEGM 625 (834)
Q Consensus 595 ~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~ 625 (834)
-..+++.|...++.|...+ +.+.+.+++.+.
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 3456777877777777666 777777777755
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-15 Score=169.32 Aligned_cols=425 Identities=11% Similarity=0.067 Sum_probs=242.1
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC
Q 003273 159 AVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238 (834)
Q Consensus 159 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 238 (834)
+..++.. +.+...|..++. +.+.|+++.|+.+|+++.+..|.+...|..++..+.+.|++++|..+|++.... .|
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p 77 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VL 77 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC
Confidence 3344433 456777888887 477888888888888888776667778888888888888888888888888743 35
Q ss_pred CccchHhHHHHhhccCCchhhhhcCcHHHHH----HHHHhcC------CCChhHHHHHHHHHHc---------CCCHHHH
Q 003273 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAK----KVFERMK------VKDVVSWNAMVTGYSR---------IGSFEDA 299 (834)
Q Consensus 239 ~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~----~~~~~~~------~~d~~~~~~li~~~~~---------~g~~~~A 299 (834)
+...|...+..... ..|+.+.|+ ++|+... ..+...|...+....+ .|+++.|
T Consensus 78 ~~~lw~~~~~~~~~--------~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 78 HIDLWKCYLSYVRE--------TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp CHHHHHHHHHHHHH--------HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHH--------HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 54444444332211 112222222 2343321 1245566666665543 5666666
Q ss_pred HHHHHHhHhcCCCCCe---eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHH
Q 003273 300 FALFKKMRQENVKLNV---VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYT 376 (834)
Q Consensus 300 ~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 376 (834)
..+|++.... |+. ..|..........| ..+...++. ...+.+..|..++...
T Consensus 150 ~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~ 204 (530)
T 2ooe_A 150 RRVYQRGCVN---PMINIEQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEY 204 (530)
T ss_dssp HHHHHHHTTS---CCTTHHHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---hhhhHHHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 6666666652 211 11211111000000 000011110 0123344444444332
Q ss_pred HHHhhhcCC---CCCCh--------hhHHHHHHHHHHhC----CCh----HHHHHHHHhcCCCCC-CccchHHHHHHHHh
Q 003273 377 IKRVLSVDG---SHPDD--------LMVINALIDMYAKC----KSV----DVARVMFDAIAPKNR-DVATWTVMIGSYSQ 436 (834)
Q Consensus 377 ~~~~~~~~~---~~~~~--------~~~~~~li~~y~~~----g~~----~~A~~~f~~~~~~~~-~~~~~~~li~~~~~ 436 (834)
......... ..+|+ ...|...+..-... ++. +.|..+|++.....| +...|...+..+.+
T Consensus 205 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 205 ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 284 (530)
T ss_dssp HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 211100000 01222 12333333222211 111 234444444432223 34445444444443
Q ss_pred -------cCChh-------HHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 437 -------NGGAN-------DALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 437 -------~g~~~-------~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
.|+.+ +|..+|++.++ .+.| .+..++..
T Consensus 285 ~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~---~~~p-----------------------------------~~~~l~~~ 326 (530)
T 2ooe_A 285 SSKLLAEKGDMNNAKLFSDEAANIYERAIS---TLLK-----------------------------------KNMLLYFA 326 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---TTCS-----------------------------------SCHHHHHH
T ss_pred hchhhhhccchhhhhhhhHHHHHHHHHHHH---HhCc-----------------------------------ccHHHHHH
Confidence 34444 44444444432 0122 55667778
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CCC-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH-HHhc
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK--QRN-V-VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYA-CSHS 576 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~--~~~-~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~ 576 (834)
++..+.+.|++++|..+|+++. .|+ . ..|..++..+.+.|+.++|..+|++..+. .|+ ...|...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 8888888888888888888776 343 2 47888888888888899999999988873 444 3333332222 3357
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCcHHHH
Q 003273 577 GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM----PMEPT--PIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 577 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a 650 (834)
|++++|..+|+...+.. +.+...|..+++++.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88999999998887542 234677888888888888888888888876 22232 44788888888888888888
Q ss_pred HHHHHHHHhcCCC
Q 003273 651 ELAANRLLELESE 663 (834)
Q Consensus 651 ~~~~~~~~~~~p~ 663 (834)
..+.+++.+..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 8888888888774
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-17 Score=169.60 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=181.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcC
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG-DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHG 542 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 542 (834)
+...+...|+++.|..++..+.+... .++..+..+...|...| ++++|...|+++. ..+...|..+...+...|
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc
Confidence 33333444444444444444444322 56677788889999999 9999999999876 345778999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 543 LGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 543 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
++++|+..|+++.+. .|+ ...+..+...+...|++++|..+++.+.+ ..+.+...+..+...|.+.|++++|.+.
T Consensus 140 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 140 EHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp CHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999984 554 67778889999999999999999999874 2334578899999999999999999999
Q ss_pred HHhCC-C----------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 003273 622 IEGMP-M----------EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSL 690 (834)
Q Consensus 622 ~~~~~-~----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 690 (834)
++++. . ..+..+|..+...+...|+.+.|...+++++++.|+++.++..++.+|...|++++|.+.+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 98761 0 234678999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh
Q 003273 691 MKH 693 (834)
Q Consensus 691 m~~ 693 (834)
+.+
T Consensus 296 al~ 298 (330)
T 3hym_B 296 ALG 298 (330)
T ss_dssp TTT
T ss_pred HHc
Confidence 754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-14 Score=164.60 Aligned_cols=399 Identities=10% Similarity=0.070 Sum_probs=288.9
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 278 KDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 278 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.|...|..++. +.+.|++++|..+|+++.+..+. +...|...+..+.+.|++++|..+|++.+... |+...+...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 47788999998 57889999999999999987554 67789999999999999999999999998754 6666555555
Q ss_pred Hhh-hhhchhhhhhH----HHHHHHHHhhhcCCCCCChhhHHHHHHHHHHh---------CCChHHHHHHHHhcCCCCCC
Q 003273 358 SGC-ASVGALLLGKE----THCYTIKRVLSVDGSHPDDLMVINALIDMYAK---------CKSVDVARVMFDAIAPKNRD 423 (834)
Q Consensus 358 ~a~-~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~~~~~ 423 (834)
... ...|+.+.+++ ++..++.. -+..+++..+|...+....+ .|+++.|+.+|++... .|+
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~ 161 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDK----IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM 161 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHH----TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh
Confidence 422 34566776665 55555443 12234567788888887765 6889999999999886 343
Q ss_pred c---cchHHHHHH---H----------HhcCChhHHHHHHHh------hcccCCC---CcCCc--------ccHHHHHHH
Q 003273 424 V---ATWTVMIGS---Y----------SQNGGANDALALFPQ------MFQQDKL---VKPNA--------FTLSCALMA 470 (834)
Q Consensus 424 ~---~~~~~li~~---~----------~~~g~~~~A~~l~~~------m~~~~~g---~~p~~--------~t~~~ll~a 470 (834)
. ..|...... + .+.+++.+|..++.+ ..+ .. +.|+. ..+...+.-
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~--~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLD--RNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCC--SSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--cccccCCCCCChhHHHHHHHHHHHHHH
Confidence 2 233322211 0 124567777777765 332 21 23331 122222211
Q ss_pred Hhh----hhh----HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh-------cCCHH-------HHHHHHhhcCC---
Q 003273 471 CAR----LAA----LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR-------SGDID-------TARVVFDNLKQ--- 525 (834)
Q Consensus 471 ~~~----~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~~~~~~~--- 525 (834)
... .++ .+.+..++..+++... .++.++..++..+.+ .|+++ +|..+|++..+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 111 011 1355667777777543 678888888888876 69987 99999998863
Q ss_pred C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003273 526 R-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG--VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEH 601 (834)
Q Consensus 526 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 601 (834)
| +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|+...+. .|. ...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~ 392 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHV 392 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHH
Confidence 4 577899999999999999999999999999 67763 47888888888999999999999998743 333 333
Q ss_pred HHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----hHHHHHHH
Q 003273 602 YACIVDL-LGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG----SYTLLSNI 674 (834)
Q Consensus 602 ~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 674 (834)
|...+.+ +...|+.++|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .+...+..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3333322 34689999999999976 2224 5789999999999999999999999999998877665 67777888
Q ss_pred HHhcCCchhHHHHHHHHHhc
Q 003273 675 YANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 675 ~~~~g~~~~a~~~~~~m~~~ 694 (834)
....|+.+.+..+.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=170.93 Aligned_cols=253 Identities=14% Similarity=0.077 Sum_probs=140.6
Q ss_pred HHcCCCHHHHHH-HHHHhHhcCC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhch
Q 003273 290 YSRIGSFEDAFA-LFKKMRQENV---KLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGA 365 (834)
Q Consensus 290 ~~~~g~~~~A~~-l~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 365 (834)
+...|++++|.. .|++...... ..+...|..+...+.+.|++++|+..|+++.+.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------- 93 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------------------- 93 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---------------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------
Confidence 344577888887 7775544322 224667888888888888888888888888763
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHH
Q 003273 366 LLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDAL 444 (834)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 444 (834)
.|.+..++..+...|.+.|++++|...|+++....| +..+|..+...|...|++++|+
T Consensus 94 ---------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 94 ---------------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 233444555666666677777777777766554344 4566677777777777777777
Q ss_pred HHHHhhcccCCCCcCCcccHHH----------------HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHH
Q 003273 445 ALFPQMFQQDKLVKPNAFTLSC----------------ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYS 508 (834)
Q Consensus 445 ~l~~~m~~~~~g~~p~~~t~~~----------------ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 508 (834)
+.|+++.. ..|+...... .+..+...|+++.|...+..+.+......++.++..+...|.
T Consensus 153 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 153 EILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHH----TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHH----hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 77777765 3343322111 122222555555555555555554432114455555555555
Q ss_pred hcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 003273 509 RSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLK 584 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 584 (834)
+.|++++|...|+++. ..+..+|..+...+...|++++|+..|+++.+ ..|+ ..++..+..++...|++++|..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5566666655555544 22344555555555555555555555555555 2343 4455555555555555555555
Q ss_pred HHHHhH
Q 003273 585 YFDSMS 590 (834)
Q Consensus 585 ~~~~m~ 590 (834)
+|+.+.
T Consensus 307 ~~~~al 312 (368)
T 1fch_A 307 HFLEAL 312 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=164.59 Aligned_cols=283 Identities=11% Similarity=0.124 Sum_probs=105.1
Q ss_pred hhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHH
Q 003273 78 VSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSV 157 (834)
Q Consensus 78 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (834)
-+.|++++|.+++++++++ .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...
T Consensus 14 ~~~~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3678899999999999655 4699999999999999999999965 35778999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC
Q 003273 158 HAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQ 237 (834)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 237 (834)
++...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+.
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------ 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC------C----------------CTTTHHHHHHHTT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------
Confidence 9888874 46688899999999999999999988853 467799999999999999999999999772
Q ss_pred CCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee
Q 003273 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317 (834)
Q Consensus 238 p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 317 (834)
.|..+..++. +.|++++|.+.+.+. .++.+|..++.+|...|+++.|......+. + ++.-
T Consensus 150 ----n~~~LA~~L~---------~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~ 209 (449)
T 1b89_A 150 ----NFGRLASTLV---------HLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADE 209 (449)
T ss_dssp ----CHHHHHHHHH---------TTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHH
T ss_pred ----hHHHHHHHHH---------HhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhh
Confidence 4555555555 555666666666665 256666666666666666666644443322 1 2222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 003273 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397 (834)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 397 (834)
...++..|.+.|++++|+.+++..+... +-....|+-|
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le------------------------------------------~ah~~~ftel 247 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE------------------------------------------RAHMGMFTEL 247 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST------------------------------------------TCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc------------------------------------------HHHHHHHHHH
Confidence 3345666666666666666666654321 2233444555
Q ss_pred HHHHHhC--CChHHHHHHHHhcCCCC------CCccchHHHHHHHHhcCChhHHHHH
Q 003273 398 IDMYAKC--KSVDVARVMFDAIAPKN------RDVATWTVMIGSYSQNGGANDALAL 446 (834)
Q Consensus 398 i~~y~~~--g~~~~A~~~f~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l 446 (834)
.-.|+|- +++.+..+.|..-.... .+...|..+...|.+.++++.|...
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 5555543 34445555554333111 2466799999999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=169.04 Aligned_cols=281 Identities=12% Similarity=-0.043 Sum_probs=225.3
Q ss_pred HHhCCChHHHHH-HHHhcCCCCC-----CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCC-cccHHHHHHHHhh
Q 003273 401 YAKCKSVDVARV-MFDAIAPKNR-----DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN-AFTLSCALMACAR 473 (834)
Q Consensus 401 y~~~g~~~~A~~-~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~-~~t~~~ll~a~~~ 473 (834)
|.-.|++++|.. .|++.....| +...|..+...|.+.|++++|+..|+++++ ..|+ ...+..+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAE 110 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 445578899998 8886654433 356788899999999999999999999987 4454 4567777888899
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHH---------------HH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTS---------------LM 535 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~---------------li 535 (834)
.|+++.|...+..+.+... .++.++..+...|.+.|++++|...|+++. .| +...+.. .+
T Consensus 111 ~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLELKP--DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 9999999999999998764 578889999999999999999999999876 22 2223321 13
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 003273 536 TGYGMHGLGDKAHWAFDQMRKEGLAPD---GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612 (834)
Q Consensus 536 ~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 612 (834)
..+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .+.+...+..++.+|.+.
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANG 264 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHc
Confidence 3344889999999999999984 554 778899999999999999999999998753 233577899999999999
Q ss_pred CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcC
Q 003273 613 NRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEK-----------DGSYTLLSNIYANAG 679 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g 679 (834)
|++++|.+.++++ ... .+...|..+...+...|+.+.|...+++++++.|++ ..+|..++.+|...|
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999999987 223 457789999999999999999999999999999987 789999999999999
Q ss_pred CchhHHHHHHHH
Q 003273 680 RWKDVARIRSLM 691 (834)
Q Consensus 680 ~~~~a~~~~~~m 691 (834)
++++|..+++..
T Consensus 345 ~~~~A~~~~~~~ 356 (368)
T 1fch_A 345 QSDAYGAADARD 356 (368)
T ss_dssp CGGGHHHHHTTC
T ss_pred ChHhHHHhHHHH
Confidence 999999987643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=165.26 Aligned_cols=350 Identities=14% Similarity=0.066 Sum_probs=118.2
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQ 340 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 340 (834)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++.+.|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455666666666666433 36666666666666666666666542 2555666666666666666666665554
Q ss_pred HHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC
Q 003273 341 MQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK 420 (834)
Q Consensus 341 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 420 (834)
.++. .+++ .+.+.|+.+|.++|+++++.++++
T Consensus 87 ark~--~~~~-----------------------------------------~i~~~Li~~Y~Klg~l~e~e~f~~----- 118 (449)
T 1b89_A 87 ARKK--ARES-----------------------------------------YVETELIFALAKTNRLAELEEFIN----- 118 (449)
T ss_dssp -----------------------------------------------------------------CHHHHTTTTT-----
T ss_pred HHHh--Cccc-----------------------------------------hhHHHHHHHHHHhCCHHHHHHHHc-----
Confidence 4432 2333 444455555555555555544442
Q ss_pred CCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHH
Q 003273 421 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVA 500 (834)
Q Consensus 421 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 500 (834)
.|+..+|+.++..|...|++++|..+|..+. .|..+..++.+.|+++.|.+.+..+ .++.+|
T Consensus 119 ~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-----------n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~W 180 (449)
T 1b89_A 119 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTW 180 (449)
T ss_dssp CC----------------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhH
Confidence 2344455555555555555555555555431 3444444444444444444444443 344555
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH--hcC
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS--HSG 577 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g 577 (834)
..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++..+. ..+. ...|+.+.-+++ +.+
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHH
Confidence 666666666666666655554433 2323333466667777777777777776654 3333 333444433333 334
Q ss_pred CHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003273 578 MVDQGLKYFDSMSKEFGISA------RAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
++.+.++.|. ++-+++| +..+|.-++-+|..-++++.|...+-+-+ |+..--........+-.+.|.--
T Consensus 258 k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyY 332 (449)
T 1b89_A 258 KMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYY 332 (449)
T ss_dssp HHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHH
Confidence 4444444443 2224444 35567777778888888887777665543 22222222333333444444444
Q ss_pred HHHHHHHhcCCCC----------CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 652 LAANRLLELESEK----------DGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 652 ~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
++..-.++..|.- ..-+...+..+.+.|.+.-++.++..+.
T Consensus 333 kai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 333 RAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4443333333320 0112233444455555555555554444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=169.81 Aligned_cols=373 Identities=12% Similarity=0.044 Sum_probs=242.8
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhHhc-----C--CCC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMRQE-----N--VKL-NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV 351 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 351 (834)
...||.|...|...|++++|++.|++..+. + ..| ..++|+.+...|...|++++|+..+++..+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i------- 123 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV------- 123 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------
Confidence 456888888888888888888888776432 0 111 3456777777788888888887777776541
Q ss_pred HHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHHHhC--CChHHHHHHHHhcCCCCCC-ccch
Q 003273 352 TLVSLLSGCASVGALLLGKETHCYTIKRVLSVDG-SHPDDLMVINALIDMYAKC--KSVDVARVMFDAIAPKNRD-VATW 427 (834)
Q Consensus 352 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~~~~~~-~~~~ 427 (834)
.....+ .......++..+..++.+. +++++|...|++.....|+ ...+
T Consensus 124 ----------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 124 ----------------------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp ----------------------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ----------------------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 000000 1122344555555555554 5699999999998766664 4455
Q ss_pred HHHHHH---HHhcCChhHHHHHHHhhcccCCCCcCCcc-cHHHHHHHHh----hhhhHHHHHHHHHHHHHhCCCccchhH
Q 003273 428 TVMIGS---YSQNGGANDALALFPQMFQQDKLVKPNAF-TLSCALMACA----RLAALRFGRQIHAYVLRNQYEMLIPFV 499 (834)
Q Consensus 428 ~~li~~---~~~~g~~~~A~~l~~~m~~~~~g~~p~~~-t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 499 (834)
..+... +...++.++|++.|++.++ +.|+.. .+..+...+. ..+..+.+.+.+....+... ..+.+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~----l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~--~~~~~ 249 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIR----LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP--GVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHH----HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS--SCHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhh----cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc--cHHHH
Confidence 555444 3456888999999999987 566554 3333333333 34677889999988887654 67788
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHc
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMH-------------------GLGDKAHWAFDQMRKE 557 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~ 557 (834)
+..+...|.+.|++++|...|++.. .| +..+|..+...|... +..++|+..|++..+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~- 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE- 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh-
Confidence 8999999999999999999999887 34 556777776665432 336778888888887
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHH
Q 003273 558 GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA--EHYACIVDL-LGRANRLDEAVELIEGM-PMEPTPI 632 (834)
Q Consensus 558 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~ 632 (834)
..|+ ..++..+...+...|++++|..+|++..+. ...|.. ..+..+... +...|++++|++.+++. .+.|+..
T Consensus 329 -~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 329 -ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp -HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred -cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 4565 677888999999999999999999988743 222221 123333333 45789999999999876 4556654
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEE
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWV 705 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 705 (834)
.+... .+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-.-....+|+
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 44332 34566778889999999999999999999999999999999999988764433344554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-14 Score=160.88 Aligned_cols=369 Identities=9% Similarity=-0.032 Sum_probs=297.2
Q ss_pred CCChhHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCC
Q 003273 277 VKDVVSWNAMVTGYSR----IGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQ----RGHGHEALDVFRQMQFCGLEP 348 (834)
Q Consensus 277 ~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p 348 (834)
..+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577888888888888 899999999999988764 66788888888988 899999999999998865
Q ss_pred CHhHHHHHHHhhhh----hchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHh----CCChHHHHHHHHhcCCC
Q 003273 349 NVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAK----CKSVDVARVMFDAIAPK 420 (834)
Q Consensus 349 d~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~ 420 (834)
+...+..+-..+.. .++.+.|...+..+... + +......|..+|.. .+++++|.+.|++..+.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44555556666666 67889999999888775 3 46678888889987 78999999999987643
Q ss_pred CCCccchHHHHHHHHh----cCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhh----hhhHHHHHHHHHHHHHhCC
Q 003273 421 NRDVATWTVMIGSYSQ----NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACAR----LAALRFGRQIHAYVLRNQY 492 (834)
Q Consensus 421 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~ 492 (834)
.+..++..+...|.. .+++++|++.|++..+ .+ +...+..+-..+.. .++.+.|...+....+.+
T Consensus 181 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT--SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred -CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 477888888888887 8999999999999987 43 33445555555554 678999999999888764
Q ss_pred CccchhHHhHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCC
Q 003273 493 EMLIPFVANCLIDMYSR----SGDIDTARVVFDNLKQ-RNVVSWTSLMTGYGMH-----GLGDKAHWAFDQMRKEGLAPD 562 (834)
Q Consensus 493 ~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~ 562 (834)
++..+..|..+|.. .++.++|...|++..+ .+...+..+...|... ++.++|+..|++..+.| +
T Consensus 254 ---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 254 ---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp ---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 44566778888888 8999999999998874 4667888888888887 89999999999999854 4
Q ss_pred hhHHHHHHHHHHhcC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 003273 563 GVTFLVLLYACSHSG---MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLDEAVELIEGMPMEPTPIIWV 635 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 635 (834)
...+..+...+...| ++++|.++|+...+. .+...+..+..+|.. .+++++|.+.+++.....++..+.
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~ 403 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 566777777777766 789999999988753 467788889999988 899999999999874345677888
Q ss_pred HHHHHHHh----cCcHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 003273 636 ALLNGCRI----HANVELGELAANRLLELESE---KDGSYTLLSNIYAN 677 (834)
Q Consensus 636 ~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 677 (834)
.|...+.. .+|.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88888887 89999999999999999954 66666667666553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=169.73 Aligned_cols=229 Identities=13% Similarity=0.083 Sum_probs=127.6
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
+...|..+...+.+.|++++|+.+|+++.+ ..|.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------------------------------~~p~~~~~ 101 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL------------------------------------------QDPGDAEA 101 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH------------------------------------------HCTTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------hCcCCHHH
Confidence 455677777788888888888888877765 22344556
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH--------
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL-------- 464 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~-------- 464 (834)
+..+...|.+.|++++|...|+++....| +..+|..+...|...|++++|+..|+++.+ ..|+....
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK----QNPKYKYLVKNKKGSP 177 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHCC--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCccchHHHhhhccch
Confidence 66777777777777777777777654444 466777778888888888888888888766 33432211
Q ss_pred ---HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 003273 465 ---SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGY 538 (834)
Q Consensus 465 ---~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 538 (834)
..+...+...|+++.|..++..+.+......++.++..+...|.+.|++++|...|+++. ..+..+|+.+...|
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 112333444444444444444444433211134444555555555555555555555443 22344455555555
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
...|++++|+..|+++++ ..|+ ..++..+..+|...|++++|...|+.+.
T Consensus 258 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555544 2333 4444444455555555555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=167.53 Aligned_cols=394 Identities=13% Similarity=0.044 Sum_probs=213.1
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhcCC---------CCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC
Q 003273 168 SNVFVCNALMAMYARCDTLSYARQLFDEMFQ---------PGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQG 238 (834)
Q Consensus 168 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 238 (834)
....+||.|...|...|++++|++.|++..+ ..+...++|+.+...|...|++++|...|++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i----- 123 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV----- 123 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----
Confidence 3456789999999999999999988876432 12225678999999999999999999998876532
Q ss_pred CccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcC----CCChhHHHHHHHHHHc--CCCHHHHHHHHHHhHhcCCC
Q 003273 239 DGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMK----VKDVVSWNAMVTGYSR--IGSFEDAFALFKKMRQENVK 312 (834)
Q Consensus 239 ~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~ 312 (834)
..... .....+++.+..++.. .+++++|...|++..+..+.
T Consensus 124 ---------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 124 ---------------------------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp ---------------------------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred ---------------------------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 00011 1123445555444444 45789999999998877544
Q ss_pred CCeeeHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCC
Q 003273 313 LNVVTWSAVIAG---YAQRGHGHEALDVFRQMQFCGLEPNV-VTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHP 388 (834)
Q Consensus 313 p~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (834)
+...+..+... +...++.++|++.|++..+.. |+. ..+..+...+.
T Consensus 171 -~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~--------------------------- 220 (472)
T 4g1t_A 171 -NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLH--------------------------- 220 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHH---------------------------
T ss_pred -CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHH---------------------------
Confidence 45555555444 334577778888888776532 222 22222211111
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccH-HH
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTL-SC 466 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~-~~ 466 (834)
..+...|++++|.+.|++.....| +...|..+...|...|++++|+..|++..+ ..|+.... ..
T Consensus 221 ----------~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~ 286 (472)
T 4g1t_A 221 ----------KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE----YIPNNAYLHCQ 286 (472)
T ss_dssp ----------HCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHH
T ss_pred ----------HHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH----hCCChHHHHHH
Confidence 112223455566666655443333 445566666677777777777777777665 45554322 11
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL 543 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 543 (834)
+...+...+.... .. ............+..++|...|+... ..+..+|..+...|...|+
T Consensus 287 lg~~y~~~~~~~~---------~~--------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NL--------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh---------hH--------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 1111111100000 00 00001111112233566777776654 3456678888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 003273 544 GDKAHWAFDQMRKEGLAPDG--VTFLVLLY-ACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVE 620 (834)
Q Consensus 544 ~~~A~~l~~~m~~~g~~p~~--~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 620 (834)
+++|+..|++.++....|.. ..+..+.. .....|+.++|+..|++.. .+.|+........ +.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHH
Confidence 99999999998884333321 12333332 3457789999999998876 3556543332222 22333
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 621 LIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 621 ~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
++++. . .+.++.+|..|...+...|+.++|++.+++++++.|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33332 1 1245778999999999999999999999999999999888776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-14 Score=154.85 Aligned_cols=383 Identities=12% Similarity=0.028 Sum_probs=224.4
Q ss_pred chhHHHHHHHHHHh----CCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHh----CCChhHHHHHHHHhhhCCCCCCCc
Q 003273 169 NVFVCNALMAMYAR----CDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQ----SGDAEGGLMLFARMTGDVKVQGDG 240 (834)
Q Consensus 169 ~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~ 240 (834)
++..+..|...|.. .++++.|...|++..+.+ +..++..|...|.. .+++++|+..|++..+. +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G----- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T-----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C-----
Confidence 55566666666666 677777777777665443 55667777777776 67777777777766543 1
Q ss_pred cchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCCee
Q 003273 241 VSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSR----IGSFEDAFALFKKMRQENVKLNVV 316 (834)
Q Consensus 241 ~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ 316 (834)
+...+..|...|.. .+++++|...|++..+.| +..
T Consensus 110 --------------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 110 --------------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred --------------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 22233333444443 445555555555554443 334
Q ss_pred eHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhh----hchhhhhhHHHHHHHHHhhhcCCCCC
Q 003273 317 TWSAVIAGYAQ----RGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCAS----VGALLLGKETHCYTIKRVLSVDGSHP 388 (834)
Q Consensus 317 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (834)
++..+...|.. .+++++|++.|++..+.| +...+..+-..+.. .++.+.|...+....+. +
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~-- 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS------G-- 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T--
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC------C--
Confidence 44444444444 445555555555554432 22223223222222 33333444444333332 1
Q ss_pred ChhhHHHHHHHHHHh----CCChHHHHHHHHhcCCCCCCccchHHHHHHHHh----cCChhHHHHHHHhhcccCCCCcCC
Q 003273 389 DDLMVINALIDMYAK----CKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ----NGGANDALALFPQMFQQDKLVKPN 460 (834)
Q Consensus 389 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~ 460 (834)
+......|..+|.. .+++++|...|++.... .+...+..+...|.. .+++++|+..|++..+ .
T Consensus 218 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~--~----- 288 (490)
T 2xm6_A 218 -DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE--Q----- 288 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT--T-----
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--c-----
Confidence 23344555555554 56677777777765532 344455555555555 5666677776666654 2
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhc-----CCHHHHHHHHhhcC-CCChhHHHHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS-----GDIDTARVVFDNLK-QRNVVSWTSL 534 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~~~~~~-~~~~~~~~~l 534 (834)
.++..+..|..+|... ++.++|...|++.. ..+...+..+
T Consensus 289 ----------------------------------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 334 (490)
T 2xm6_A 289 ----------------------------------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANL 334 (490)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2233445566666665 77888888887766 3456677777
Q ss_pred HHHHHHcC---ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 535 MTGYGMHG---LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH----SGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 535 i~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
...|...| +.++|+..|++..+. .+...+..+...|.. .+++++|..+|+...+. + +...+..|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHH
Confidence 77777655 678888888888875 356677777777777 78888888888887653 2 4667777888
Q ss_pred HHhh----cCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 608 LLGR----ANRLDEAVELIEGMP-MEP----TPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 608 ~~~~----~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+|.+ .+++++|.+.|++.. ..| +...+..|...+. .+.+.++..+++.++..|+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHH
Confidence 8877 788888888888762 122 2333333333222 2445666667777666664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=163.38 Aligned_cols=231 Identities=12% Similarity=0.004 Sum_probs=188.9
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 423 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
+...|..+...+.+.|++++|+..|+++++ ..| .+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p-----------------------------------~~~~~~~~ 104 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL----QDP-----------------------------------GDAEAWQF 104 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCc-----------------------------------CCHHHHHH
Confidence 455677778888888888888888888876 333 45666788
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hH----------HHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG-VT----------FLV 568 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t----------~~~ 568 (834)
+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+. .. +..
T Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHH
Confidence 8889999999999999999876 34678899999999999999999999999998 45542 22 234
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCc
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHAN 646 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~ 646 (834)
+...+...|++++|..+|+.+.+...-.++...+..+..+|.+.|++++|++.++++ .. +.+..+|..+...+...|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 577899999999999999999865332236889999999999999999999999987 22 3457899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+++|+..+++++++.|+++.++..++.+|...|++++|...++++.+.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-15 Score=153.24 Aligned_cols=241 Identities=9% Similarity=0.018 Sum_probs=171.0
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 397 LIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 397 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
+..+|...|+++.|...++... .|+..++..+...|...|+.++|++.++++.. .+..|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~--~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~--~~~~P----------------- 98 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSS--APELQAVRMFAEYLASHSRRDAIVAELDREMS--RSVDV----------------- 98 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTS--CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH--SCCCC-----------------
T ss_pred HHHHHHHCCCHHHHHHHhcccC--ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh--cccCC-----------------
Confidence 3445555555555555443321 23444445555555555555555555555544 22333
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.++.++..+...|...|++++|.+.|++ ..+...|..++..|.+.|+.++|.+.|+++.+
T Consensus 99 ------------------~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 99 ------------------TNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp ------------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4566667788899999999999999998 56778899999999999999999999999998
Q ss_pred cCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 003273 557 EGLAPDGVTF---LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TP 631 (834)
Q Consensus 557 ~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 631 (834)
. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. ...| ++
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4 5774321 12233444568999999999999864 4457888999999999999999999999886 3334 57
Q ss_pred HHHHHHHHHHHhcCcHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHH
Q 003273 632 IIWVALLNGCRIHANVEL-GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 686 (834)
.+|..++..+...|+.++ +.+.++++++++|+++.+. ++..+.+.++++..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 789999988888888765 6788899999999887553 44555555555543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-14 Score=149.26 Aligned_cols=243 Identities=13% Similarity=0.045 Sum_probs=193.0
Q ss_pred HHhCCChHHHHHHHHhcCCCCCCc--cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 401 YAKCKSVDVARVMFDAIAPKNRDV--ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 401 y~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
....|+++.|+..++......|+. .....+..+|...|++++|+..++.. .|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------~~------------------- 62 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-------SA------------------- 62 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------SC-------------------
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-------CC-------------------
Confidence 445678888888877766444432 24455667778888888777654321 11
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK----QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQ 553 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 553 (834)
++......+...|...|+.++|.+.++++. .| +...|..+...+.+.|++++|++.+++
T Consensus 63 ----------------~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 63 ----------------PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp ----------------HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred ----------------hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 455666788899999999999999999874 24 556777778899999999999999997
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH---HHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 003273 554 MRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE---HYACIVDLLGRANRLDEAVELIEGM--PME 628 (834)
Q Consensus 554 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 628 (834)
..+...+..+...+.+.|++++|.+.|+.+.+. .|+.. ...+++..+...|++++|..+|+++ ..+
T Consensus 127 ------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p 197 (291)
T 3mkr_A 127 ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS 197 (291)
T ss_dssp ------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999999999854 35532 2234456666679999999999988 233
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh-HHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD-VARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 694 (834)
.+...|+.+..++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.+.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999987 56888888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-16 Score=161.50 Aligned_cols=258 Identities=10% Similarity=-0.005 Sum_probs=193.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHH
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a 470 (834)
..+..+...+.+.|++++|..+|+++....| +...|..+...|...|++++|+..|+++.+ ..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~----------- 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDP----------- 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCc-----------
Confidence 3445566667777777777777776654344 455666666777777777777777777665 233
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHH-------------
Q 003273 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSL------------- 534 (834)
Q Consensus 471 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~l------------- 534 (834)
.+...+..+...|.+.|++++|...|+++. .| +...+..+
T Consensus 87 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 87 ------------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142 (327)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------
T ss_pred ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHH
Confidence 344555666677777777777777777665 12 22233322
Q ss_pred -HH-HHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 003273 535 -MT-GYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 535 -i~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 611 (834)
.. .+...|++++|+..++++.+. .| +...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLAN 218 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 22 367788899999999999884 45 4778888999999999999999999998753 23457789999999999
Q ss_pred cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHh
Q 003273 612 ANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESE------------KDGSYTLLSNIYAN 677 (834)
Q Consensus 612 ~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~ 677 (834)
.|++++|.+.++++ ... .+...|..+...+...|+.+.|...+++++++.|+ ++.++..++.+|..
T Consensus 219 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 99999999999886 222 45778999999999999999999999999999998 68899999999999
Q ss_pred cCCchhHHHHHHHHH
Q 003273 678 AGRWKDVARIRSLMK 692 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~ 692 (834)
.|++++|..+++...
T Consensus 299 ~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 299 MNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999886543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-15 Score=153.55 Aligned_cols=261 Identities=15% Similarity=0.033 Sum_probs=145.9
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhH
Q 003273 314 NVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMV 393 (834)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 393 (834)
+...|..+...+...|++++|+.+|+++.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------------------------~~~~~~ 57 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA------------------------------------------PEREEA 57 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------------------------CCCHHH
Confidence 44556666667777777777777777766521 223334
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH----
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL---- 468 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll---- 468 (834)
+..+...|.+.|++++|...|+++....| +...|..+...|...|++++|++.|+++.. ..|+.......+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQAD 133 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSTTTTTC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHhHHH
Confidence 44555555556666666666655543333 445566666666666666666666666655 233332222111
Q ss_pred ----------HH--HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHH
Q 003273 469 ----------MA--CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTS 533 (834)
Q Consensus 469 ----------~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~ 533 (834)
.. +...|+++.|...+..+.+... .++.++..+...|.+.|++++|...|+++. ..+...|..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 211 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP--NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 22 4555666666666666665443 345556666666666666666666666554 234556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC----------ChHHH
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA----------RAEHY 602 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----------~~~~~ 602 (834)
+...+...|++++|+..|+++.+ ..|+ ..++..+..++...|++++|.++++.+.+...-.. +...+
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 66666666666666666666666 2343 55566666666666666666666666543211000 23445
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 003273 603 ACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
..+..+|.+.|++++|.+++++
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 5555555555555555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-16 Score=176.44 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhH---hcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003273 280 VVSWNAMVTGYSRIGSFEDAFALFKKMR---QENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356 (834)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 356 (834)
..+||+||++|++.|++++|.++|++|. .+|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999998876 4588999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhchh-hhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---CCccchHHHHH
Q 003273 357 LSGCASVGAL-LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---RDVATWTVMIG 432 (834)
Q Consensus 357 l~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~~~li~ 432 (834)
|.++++.|.. +.|.+++..|... |+.||..+|++++..+.+.+-++...+++..+.... +.+.+.+.|..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k------G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE------GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH------TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc------CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999875 6788999999999 999999999999887777655555555544433211 12344455566
Q ss_pred HHHhcC
Q 003273 433 SYSQNG 438 (834)
Q Consensus 433 ~~~~~g 438 (834)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=174.94 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=115.5
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK-------QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 567 (834)
....+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 455689999999999999999999997753 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 568 VLLYACSHSGM-VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 568 ~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
+||.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999998 57899999999865 99999999999998888876666665554444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-14 Score=137.87 Aligned_cols=193 Identities=16% Similarity=0.050 Sum_probs=158.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 667788889999999999999999999876 34677899999999999999999999999999 5786 77888899
Q ss_pred HHHHhc-----------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 003273 571 YACSHS-----------GMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVAL 637 (834)
Q Consensus 571 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 637 (834)
.++... |++++|...|+...+ +.| +...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 999999999999875 345 4678899999999999999999999987 212678899999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
...+...|+.++|+..++++++++|+++.++..++.+|...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=136.56 Aligned_cols=247 Identities=11% Similarity=-0.049 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcc--cHHHHHH
Q 003273 393 VINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAF--TLSCALM 469 (834)
Q Consensus 393 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~--t~~~ll~ 469 (834)
+.......|.+.|++++|...|+++....| +...|..+...|...|++++|+..|++... ..-.|+.. .+..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS--KVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--ccCchhHHHHHHHHHHH
Confidence 345567788889999999999998876665 455888888899999999999999998876 32222211 1334444
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 003273 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHW 549 (834)
Q Consensus 470 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 549 (834)
.+...|+++.|...+..+.+... . +...|..+...|...|++++|+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~--~-------------------------------~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT--T-------------------------------RLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST--T-------------------------------CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc--c-------------------------------cHHHHHHHHHHHHHccCHHHHHH
Confidence 44444444444444444444322 2 33444444555555555555555
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC---HHHHHHHHHh
Q 003273 550 AFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANR---LDEAVELIEG 624 (834)
Q Consensus 550 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~ 624 (834)
.|++..+ ..|+ ...+..+...+...+++++|...|+.+.+. .|+ ...+..+..++...|+ +++|...+++
T Consensus 130 ~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 130 YMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 5555444 2333 333333331222333555555555554431 222 3344444444444444 4444444433
Q ss_pred C----CCCCC------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 003273 625 M----PMEPT------PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679 (834)
Q Consensus 625 ~----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 679 (834)
+ ...|+ ..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 3 11122 2467778888888999999999999999999999888777766655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-13 Score=134.13 Aligned_cols=92 Identities=7% Similarity=-0.074 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
.+..+...+.+.|++++|.+.++++ . .+.+...|..+...+...|+.+.|...++++++..|+++.++..++.+|...
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443 1 1123444555555555555555555555555555555555555555555555
Q ss_pred CCchhHHHHHHHHH
Q 003273 679 GRWKDVARIRSLMK 692 (834)
Q Consensus 679 g~~~~a~~~~~~m~ 692 (834)
|++++|...++...
T Consensus 221 g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 221 KEYASALETLDAAR 234 (258)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=132.33 Aligned_cols=235 Identities=9% Similarity=-0.013 Sum_probs=199.4
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccc------h
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLI------P 497 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 497 (834)
...|..+...+...|++++|+..|+++++ .. .+...+..+..++...|+++.|...+..+.+.... .. +
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWE--LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH--hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHH
Confidence 35688899999999999999999999998 44 77788888999999999999999999998875432 11 6
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACS 574 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 574 (834)
.++..+...|.+.|++++|...|+++. .|+. ..+...|++++|+..++++.. ..|+ ...+..+...+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHH
Confidence 788999999999999999999999887 4553 346677889999999999998 5675 677888899999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHH
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGEL 652 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~ 652 (834)
..|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.+++. ... .+...|..+...+...|+.+.|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999853 2345788999999999999999999999887 223 357789999999999999999999
Q ss_pred HHHHHHhcC------CCCCchHHHHHHH
Q 003273 653 AANRLLELE------SEKDGSYTLLSNI 674 (834)
Q Consensus 653 ~~~~~~~~~------p~~~~~~~~l~~~ 674 (834)
.+++++++. |++...+..+..+
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999 8777666666543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-13 Score=142.98 Aligned_cols=245 Identities=10% Similarity=0.072 Sum_probs=198.2
Q ss_pred hhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCC-hhHHHHHHHhhcccCCCCcCCcccHHHH
Q 003273 390 DLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGG-ANDALALFPQMFQQDKLVKPNAFTLSCA 467 (834)
Q Consensus 390 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~g~~p~~~t~~~l 467 (834)
+..+++.+...|.+.|++++|...|+++....| +...|+.+...|...|+ +++|+..|++++. +.|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P-------- 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQP-------- 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCT--------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCC--------
Confidence 455677788888888888888888888776566 56778888888888886 8888888888876 445
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 003273 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG 544 (834)
Q Consensus 468 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 544 (834)
.+..+++.+..+|.+.|++++|...|+++. ..+...|..+..++...|++
T Consensus 164 ---------------------------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 164 ---------------------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred ---------------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 556677888888899999999999999887 35778999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh-cCCHHHH-----HHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcC--C
Q 003273 545 DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSH-SGMVDQG-----LKYFDSMSKEFGISA-RAEHYACIVDLLGRAN--R 614 (834)
Q Consensus 545 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g--~ 614 (834)
++|+..|+++++ +.|+ ...|+.+..++.. .|..++| +..|+..++ +.| +...|..+..+|.+.| +
T Consensus 217 ~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 217 DNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp TTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGG
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccc
Confidence 999999999999 6775 7788888888888 6665777 477887764 345 4678888999999988 6
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------c-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 003273 615 LDEAVELIEGMPMEPT-PIIWVALLNGCRIHA--------N-VELGELAANRL-LELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 615 ~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 678 (834)
+++|++.++++...|+ ...+..|...+...| + .++|+.+++++ ++++|.....|..++..+...
T Consensus 292 ~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 292 YPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8999999988754454 667888888887764 3 58999999999 999999888888888776543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=137.78 Aligned_cols=214 Identities=10% Similarity=-0.052 Sum_probs=159.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMH 541 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 541 (834)
..+...+...|+++.|...+..+.+... .++.++..+...|...|++++|...|+++. ..+...|..+...|...
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 3333344444444444444444444322 456777888999999999999999999887 34678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVEL 621 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 621 (834)
|++++|+..|+++.+ ..|+.......+..+...|++++|..+++..... .+++...+ .++..+...++.++|.+.
T Consensus 125 g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 999999999999998 5677655555666667789999999999887753 23343344 477788888899999999
Q ss_pred HHhCC-CCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 622 IEGMP-MEPT-----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 622 ~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+++.- ..|+ ...|..+...+...|+.+.|...++++++++|++...+ +.++...|++++|.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 98763 2232 56888899999999999999999999999999775544 66788889998887665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=128.13 Aligned_cols=195 Identities=15% Similarity=0.020 Sum_probs=126.2
Q ss_pred CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHH
Q 003273 388 PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSC 466 (834)
Q Consensus 388 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ 466 (834)
|++...+..+...+.+.|++++|...|++.....| +...|..+...|.+.|++++|+..|++.++ ..|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~------ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA----RTPR------ 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC------
Confidence 45667788888888999999999999988876665 567788888888899999999999988877 4564
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhc-----------CCHHHHHHHHhhcC--CC-ChhHHH
Q 003273 467 ALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS-----------GDIDTARVVFDNLK--QR-NVVSWT 532 (834)
Q Consensus 467 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~--~~-~~~~~~ 532 (834)
++..+..+...|.+. |++++|...|++.. .| +...|.
T Consensus 72 -----------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 72 -----------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 333344444555554 66677776666655 23 455667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 003273 533 SLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA 612 (834)
Q Consensus 533 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 612 (834)
.+...|...|++++|+..|++.++.. .+...+..+..++...|++++|...|+...+. -+.+...+..+..++.+.
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 77777777777777777777777754 55666777777777777777777777776642 122355666677777777
Q ss_pred CCHHHHHHHHHhC
Q 003273 613 NRLDEAVELIEGM 625 (834)
Q Consensus 613 g~~~~A~~~~~~~ 625 (834)
|++++|.+.+++.
T Consensus 199 g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 199 GKAEEAARAAALE 211 (217)
T ss_dssp -------------
T ss_pred cCHHHHHHHHHHH
Confidence 7777777766654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-12 Score=124.23 Aligned_cols=197 Identities=12% Similarity=0.066 Sum_probs=168.5
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 570 (834)
.++.++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 556777888899999999999999999876 345778999999999999999999999999884 45 477888888
Q ss_pred HHHHhc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 003273 571 YACSHS-GMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHAN 646 (834)
Q Consensus 571 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 646 (834)
..+... |++++|..+++.+.+ .+..|+ ...+..+..++.+.|++++|++.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 899999 999999999999875 233443 677888999999999999999999877 2223 47788889999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 647 VELGELAANRLLELES-EKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+.|...++++++..| +++..+..++.++...|+.+++..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88899999999999999999999999988754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-12 Score=125.97 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=129.7
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...|..+...|...|++++|++.|+++.+ ..| .+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~-----------------------------------~~~~~~~~l 77 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDP-----------------------------------SSADAHAAL 77 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCT-----------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCC-----------------------------------ChHHHHHHH
Confidence 45566777777788888888888877765 223 334445566
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 003273 504 IDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMV 579 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 579 (834)
...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.+..|+ ...+..+..++...|++
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH
Confidence 666677777777777776654 23555666677777777777777777777766334453 45566666677777777
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 580 DQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 580 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++++
T Consensus 158 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 158 AQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777766542 1223555666666666677777776666655 222 33455666666666667777777777777
Q ss_pred HhcCCCCCch
Q 003273 658 LELESEKDGS 667 (834)
Q Consensus 658 ~~~~p~~~~~ 667 (834)
++..|+++..
T Consensus 236 ~~~~p~~~~~ 245 (252)
T 2ho1_A 236 KRLYPGSLEY 245 (252)
T ss_dssp HHHCTTSHHH
T ss_pred HHHCCCCHHH
Confidence 7777665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-12 Score=126.98 Aligned_cols=243 Identities=12% Similarity=0.065 Sum_probs=166.8
Q ss_pred eeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHH
Q 003273 315 VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVI 394 (834)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (834)
...+......+...|++++|+..|++..+. .|.+..++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------------------------~p~~~~~~ 40 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK------------------------------------------KYNSPYIY 40 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT------------------------------------------TCCCSTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------------------------CCCcHHHH
Confidence 445566677788888888888888887763 23344456
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCcc----chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDVA----TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMA 470 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a 470 (834)
..+...|.+.|++++|...|++.....++.. .|..+...|...|++++|++.|++..+ ..|+....
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~------ 110 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTRLDM------ 110 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHH------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCcccHHH------
Confidence 6677777788888888888877765333322 267778888888888888888888876 44543211
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHH
Q 003273 471 CARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKA 547 (834)
Q Consensus 471 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 547 (834)
+..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|
T Consensus 111 -----------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 111 -----------------------------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp -----------------------------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 24566677778888888888887763 3455677666334445588999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHhhcCCHHH
Q 003273 548 HWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM---VDQGLKYFDSMSKEFGISAR------AEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 548 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~------~~~~~~l~~~~~~~g~~~~ 617 (834)
+..|+++.+ ..|+ ...+..+..++...|+ +++|...++.+.+...-.|+ ...|..+...|.+.|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998888 5565 6667777777877777 77788888877654433344 2577788888999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHH
Q 003273 618 AVELIEGM-PMEP-TPIIWVALLNG 640 (834)
Q Consensus 618 A~~~~~~~-~~~p-~~~~~~~ll~~ 640 (834)
|.+.++++ ...| +...+..+...
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhh
Confidence 99998877 2334 34455544433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-12 Score=127.11 Aligned_cols=196 Identities=9% Similarity=-0.046 Sum_probs=173.2
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYA 572 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 572 (834)
+..+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5677888899999999999999999886 346778999999999999999999999999984 45 47788889999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~ 649 (834)
+...|++++|..+++.+.+ .+..| +...+..+..+|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999875 23455 4678889999999999999999999887 222 357789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
|...++++++..|++...+..++.+|...|++++|.+.++.+.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-12 Score=138.50 Aligned_cols=274 Identities=12% Similarity=0.016 Sum_probs=186.9
Q ss_pred CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC-----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCc
Q 003273 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD-----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNA 461 (834)
Q Consensus 387 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 461 (834)
.+.....+..+...+.+.|++++|...|+++....|+ ...|..+...|...|++++|+..|++... +.+
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~-- 78 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT----LAR-- 78 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHH--
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHH--
Confidence 3445556667778888888999998888887654443 24677788888888888888888887754 100
Q ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHH
Q 003273 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWT 532 (834)
Q Consensus 462 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~ 532 (834)
+.+..+....++..+...|...|++++|...|++..+ ++ ..+|.
T Consensus 79 ---------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 79 ---------------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp ---------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 0000002344556666777777777777777766541 22 33677
Q ss_pred HHHHHHHHcCC--------------------hHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 533 SLMTGYGMHGL--------------------GDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 533 ~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
.+...|...|+ +++|+..+++..+. +..|. ..++..+...+...|++++|..+++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777787 78888877776542 11222 3457777778888888888888888
Q ss_pred HhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHH
Q 003273 588 SMSKEFGISAR----AEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAAN 655 (834)
Q Consensus 588 ~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 655 (834)
...+...-.++ ...+..+..+|...|++++|.+.+++.- ..++ ..++..+...+...|+++.|...++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 76543211122 3367778888888888888888887651 1112 4467777777888888888888888
Q ss_pred HHHhcCCCC------CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 656 RLLELESEK------DGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 656 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+++++.+.. ..++..++.+|...|++++|.+.++...+
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888875443 45778888888888998888888887764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=136.10 Aligned_cols=250 Identities=11% Similarity=0.046 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHhCCC----hHHHHHHHHhcCCCCCCccchHHHHHHHHhcC---ChhHHHHHHHhhcccCCCCcCCccc
Q 003273 391 LMVINALIDMYAKCKS----VDVARVMFDAIAPKNRDVATWTVMIGSYSQNG---GANDALALFPQMFQQDKLVKPNAFT 463 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~----~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~g~~p~~~t 463 (834)
......|..+|...+. .+.+..+++... ..++..+..+...|...| +.++|++.|++..+ .| |
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--~g--~---- 210 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS--RG--T---- 210 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TT--C----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--CC--C----
Confidence 3445566666666663 344455555555 333447777777777777 77777777777765 22 1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H
Q 003273 464 LSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRS----GDIDTARVVFDNLKQRNVVSWTSLMTG-Y 538 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~ 538 (834)
.....+..|..+|... ++.++|...|++....+...+..|... |
T Consensus 211 -------------------------------~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 211 -------------------------------VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY 259 (452)
T ss_dssp -------------------------------SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2333334555555444 678888888887773356677777666 3
Q ss_pred --HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 003273 539 --GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG-----MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 539 --~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 611 (834)
...|+.++|+..|++..+.| +...+..|...|. .| ++++|..+|+... .-+...+..|..+|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRR 330 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHC
Confidence 45788889999998888765 5666666766666 45 8888988887664 3456667777777766
Q ss_pred ----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--cCCc
Q 003273 612 ----ANRLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELESEKDGSYTLLSNIYAN--AGRW 681 (834)
Q Consensus 612 ----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~ 681 (834)
..++++|.++|++.-...+......|...|.. ..|.+.|...++++.+..+. .+...+..+... .++.
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQR 408 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHH
Confidence 34888999998887433345555566665543 45888999999998887753 344444444332 2344
Q ss_pred hhHHHHHHHHH
Q 003273 682 KDVARIRSLMK 692 (834)
Q Consensus 682 ~~a~~~~~~m~ 692 (834)
++|.++.+..+
T Consensus 409 ~~a~~~~~~~~ 419 (452)
T 3e4b_A 409 AEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=129.95 Aligned_cols=210 Identities=12% Similarity=0.058 Sum_probs=112.6
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 423 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
....|..+...+...|++++|+..|+++.+ ..| .+...+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~-----------------------------------~~~~~~~~ 62 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----ENK-----------------------------------EDAIPYIN 62 (243)
T ss_dssp --------------------CCTTHHHHHT----TCT-----------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCc-----------------------------------ccHHHHHH
Confidence 344555556666666666666666666654 222 23334445
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003273 503 LIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM 578 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 578 (834)
+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .| +...+..+...+...|+
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcc
Confidence 5555566666666666665554 234556666666666677777777777776663 33 35556666666667777
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANR 656 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 656 (834)
+++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ . .+.+..+|..+...+...|+.+.|...+++
T Consensus 141 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 141 PKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777666542 1224555666666666666666666666654 1 123355666666666677777777777777
Q ss_pred HHhcCCCCCchHHHHHHHH
Q 003273 657 LLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 657 ~~~~~p~~~~~~~~l~~~~ 675 (834)
++++.|+++.++..++.+.
T Consensus 219 ~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 219 AIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHCTTCHHHHHHHTC--
T ss_pred HHccCcchHHHHHHHHHHH
Confidence 7777776666555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-12 Score=122.79 Aligned_cols=207 Identities=11% Similarity=-0.039 Sum_probs=151.3
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...|..+...|...|++++|++.|+++.+ ..| .+...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~-----------------------------------~~~~~~~~l 48 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALK----SDP-----------------------------------KNELAWLVR 48 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hCc-----------------------------------cchHHHHHH
Confidence 44555566666666666666666666654 223 334455666
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 003273 504 IDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMH-GLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM 578 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 578 (834)
...|...|++++|...|+++. ..+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|+
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 777777777777777777665 33566778888888888 888888888888887434454 5667788888888899
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME--PTPIIWVALLNGCRIHANVELGELAAN 655 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~ 655 (834)
+++|..+++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++
T Consensus 129 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 129 FGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999988888753 2234677888888899999999999888876 222 356677777777889999999999999
Q ss_pred HHHhcCCCCCchHHHH
Q 003273 656 RLLELESEKDGSYTLL 671 (834)
Q Consensus 656 ~~~~~~p~~~~~~~~l 671 (834)
.+.+..|+++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 9999999887765544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-12 Score=129.43 Aligned_cols=241 Identities=15% Similarity=-0.019 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHhHhcCCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhh
Q 003273 293 IGSFEDAFALFKKMRQENVK---LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLG 369 (834)
Q Consensus 293 ~g~~~~A~~l~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 369 (834)
.|++++|+..|+++.+.... .+..+|..+...+...|++++|+..|+++.+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------- 72 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------------------------- 72 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------------------------
Confidence 45566666666666554211 13445556666666666666666666665542
Q ss_pred hHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHH
Q 003273 370 KETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFP 448 (834)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~ 448 (834)
.+.+..++..+...|.+.|++++|...|+++....| +...|..+...|.+.|++++|+..|+
T Consensus 73 -----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 73 -----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 223344555556666666666666666666554333 45566666777777777777777777
Q ss_pred hhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC-
Q 003273 449 QMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRN- 527 (834)
Q Consensus 449 ~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~- 527 (834)
++.+ ..|+.......+..+...|+++.|...+........ .+...+ .++..+...++.++|...++.....+
T Consensus 136 ~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 136 AFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGW-NIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 7765 445544444444444445555555555555444332 222222 25555556666666666666665322
Q ss_pred ------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003273 528 ------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYF 586 (834)
Q Consensus 528 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 586 (834)
...|..+...|...|++++|...|+++.+ ..|+... ....++...|++++|++.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~--~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNFV--EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTCH--HHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhHH--HHHHHHHHHHHHHhhHHHH
Confidence 34556666666666666666666666665 3443211 1133444555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=128.08 Aligned_cols=196 Identities=8% Similarity=0.036 Sum_probs=155.7
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 570 (834)
..+..+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..|+++.+. .| +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 455667778888999999999999999886 346778999999999999999999999999984 55 477888899
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVE 648 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~ 648 (834)
..+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|+.+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998763 2346778899999999999999999999887 22 346778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999775
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=136.21 Aligned_cols=225 Identities=10% Similarity=0.035 Sum_probs=188.3
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
...|+.+...+.+.|++++|+..|++.+. +.| .+..+++.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P-----------------------------------~~~~a~~~~ 137 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE----LNA-----------------------------------ANYTVWHFR 137 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCT-----------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCc-----------------------------------cCHHHHHHH
Confidence 34577777777888888888888888876 445 556677888
Q ss_pred HHHHHhcCC-HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 003273 504 IDMYSRSGD-IDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM 578 (834)
Q Consensus 504 i~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 578 (834)
...|.+.|+ +++|...|+++. ..+...|+.+...+...|++++|+..|+++++ +.|+ ...|..+..++...|+
T Consensus 138 g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCC
Confidence 889999997 999999999887 34778999999999999999999999999999 6785 7889999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--cH
Q 003273 579 VDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGR-ANRLDEA-----VELIEGM-PMEP-TPIIWVALLNGCRIHA--NV 647 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~ 647 (834)
+++|+..|+.+++ +.| +...|+.+..+|.+ .|..++| ++.+++. ...| +...|..+...+...| +.
T Consensus 216 ~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 216 WDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp CTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred hHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 9999999999985 344 57789999999999 6665777 4777665 3334 5779999999998888 68
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------CchhHHHHHHHH-Hh
Q 003273 648 ELGELAANRLLELESEKDGSYTLLSNIYANAG---------RWKDVARIRSLM-KH 693 (834)
Q Consensus 648 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 693 (834)
+.|...++++ +.+|+++.++..|+++|.+.| .+++|.++++.+ .+
T Consensus 293 ~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 293 PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999985 258899999988 44
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-12 Score=131.13 Aligned_cols=268 Identities=12% Similarity=0.018 Sum_probs=193.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCCC-----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 394 INALIDMYAKCKSVDVARVMFDAIAPKNRD-----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 394 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
+......+.+.|++++|...|+++....|+ ...|..+...|...|++++|++.|++... +.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~---------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT----LA---------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HH----------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----Hh----------
Confidence 344566777888888888888877644443 24567777788888888888888877654 10
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYG 539 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~ 539 (834)
.+.+..+....++..+...|...|++++|...|++..+ ++ ..+|..+...|.
T Consensus 74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 00011113345566777888888888888888877651 22 336777888888
Q ss_pred HcCC--------------------hHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 540 MHGL--------------------GDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 540 ~~g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
..|+ +++|+..+++.... +..|. ..++..+...+...|++++|..+++...+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888 88888888876542 21222 44677788888999999999999988764321
Q ss_pred CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 595 ISAR----AEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 595 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
-.++ ...+..+...|.+.|++++|.+.+++.. ..++ ..++..+...+...|+.+.|...+++++++.|
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1122 3477888899999999999999888761 1122 45777888889999999999999999988765
Q ss_pred CC------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 663 EK------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 663 ~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.. ..++..++.+|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 43 347889999999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=117.42 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=128.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACI 605 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 605 (834)
+...|..+...|.+.|++++|+..|++.++ +.|+ ..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 455677777778888888888888888777 5665 666777777888888888888888777642 23345566677
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 606 VDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
...+...+++++|.+.+++. ... .+...|..+...+...|+.++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77788888888888887766 222 3567888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003273 684 VARIRSLMKHT 694 (834)
Q Consensus 684 a~~~~~~m~~~ 694 (834)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-10 Score=126.04 Aligned_cols=198 Identities=12% Similarity=-0.032 Sum_probs=138.7
Q ss_pred HHHHHHHHhhhhhHHHHH-HHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------------CC--
Q 003273 464 LSCALMACARLAALRFGR-QIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------------RN-- 527 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------------~~-- 527 (834)
+.....-+...|+.+.+. .++...+.... .+..++-..+....+.|+++.|..+|+++.. |+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIP--NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 333333344445555554 66655554321 4555566667777777777777777776652 21
Q ss_pred ----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHhHHhcCCC
Q 003273 528 ----------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH-SGMVDQGLKYFDSMSKEFGIS 596 (834)
Q Consensus 528 ----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~ 596 (834)
...|-..+....+.|..+.|..+|.+.++.-..+....|......-.+ .++.+.|..+|+...+.+.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-- 501 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-- 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--
Confidence 236888888888889999999999999885111123334333322233 3558999999999987643
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 597 ARAEHYACIVDLLGRANRLDEAVELIEGMP-MEP----TPIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
-+...+...++.....|+.+.|..+|++.- ..| ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 345567888999999999999999999873 223 246899999999999999999999999999999865
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=140.83 Aligned_cols=271 Identities=11% Similarity=-0.002 Sum_probs=193.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCc-----cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH
Q 003273 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDV-----ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS 465 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~ 465 (834)
...+..+...+...|++++|...|+++....|+. ..|..+...|...|++++|+..|++.+. ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~--------- 116 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--LA--------- 116 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HH---------
Confidence 3344556677888888888888888876544542 3577777888888888888888887765 10
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHHHHH
Q 003273 466 CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----R----NVVSWTSLMT 536 (834)
Q Consensus 466 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~----~~~~~~~li~ 536 (834)
.+.+..+....++..+...|...|++++|...|++..+ . ...+|..+..
T Consensus 117 ----------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 117 ----------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 00000113445566677777788888888877776651 1 2346777777
Q ss_pred HHHHcCC-----------------hHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 003273 537 GYGMHGL-----------------GDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFG 594 (834)
Q Consensus 537 ~~~~~g~-----------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (834)
.|...|+ +++|+..+++..+. +..|. ..++..+...+...|++++|..+++...+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8888888 88888888876552 12222 45677788888899999999999887764321
Q ss_pred CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 595 ISAR----AEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 595 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
-.++ ...+..+..+|...|++++|.+.+++.. ...+ ..+|..+...+...|+.+.|...+++++++.+
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1112 2367888889999999999999887661 1111 45778888889999999999999999988755
Q ss_pred CC------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 663 EK------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 663 ~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+. ..++..++.+|...|++++|.+.++...+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 43 348889999999999999999999988754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-11 Score=133.41 Aligned_cols=344 Identities=9% Similarity=-0.033 Sum_probs=208.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHhhhh
Q 003273 286 MVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHG---HEALDVFRQMQFCGLEPNVVTLVSLLSGCAS 362 (834)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 362 (834)
+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|+..|++..+. +...+..+-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556677888899999998887765 555666666777777777 8888888887753 22223223221222
Q ss_pred h-----chhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHH---HHHHHhcCCCCCCccchHHHHHHH
Q 003273 363 V-----GALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVA---RVMFDAIAPKNRDVATWTVMIGSY 434 (834)
Q Consensus 363 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A---~~~f~~~~~~~~~~~~~~~li~~~ 434 (834)
. ++.++|...+....+. +.+. ....|..+|...+..+.+ .+.+..... ..+...+..+...|
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~------g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN------GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AGYPEAGLAQVLLY 151 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT------TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HTCTTHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC------CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 1 2455555555555543 3221 444455555544433222 222222110 01233333344444
Q ss_pred HhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC---
Q 003273 435 SQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG--- 511 (834)
Q Consensus 435 ~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--- 511 (834)
...+.++++.. .+..++... .. .++..+..|..+|.+.|
T Consensus 152 ~~~~~~~~~~~---------------------------------~a~~~~~~a----~~-~~~~a~~~Lg~~~~~~g~~~ 193 (452)
T 3e4b_A 152 RTQGTYDQHLD---------------------------------DVERICKAA----LN-TTDICYVELATVYQKKQQPE 193 (452)
T ss_dssp HHHTCGGGGHH---------------------------------HHHHHHHHH----TT-TCTTHHHHHHHHHHHTTCHH
T ss_pred HcCCCcccCHH---------------------------------HHHHHHHHH----Hc-CCHHHHHHHHHHHHHcCCcc
Confidence 43333322222 222222222 11 44557788899999999
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCChhHHHHHHHH-H--HhcCCHHH
Q 003273 512 DIDTARVVFDNLK---QRNVVSWTSLMTGYGMH----GLGDKAHWAFDQMRKEGLAPDGVTFLVLLYA-C--SHSGMVDQ 581 (834)
Q Consensus 512 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~ 581 (834)
+.++|...|++.. .++...+..|...|... ++.++|+..|++.. . -+...+..|... + ...+++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHH
Confidence 8999999999876 34455557777777554 68999999999986 2 235566666666 4 56899999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHH
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRAN-----RLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGEL 652 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~ 652 (834)
|..+|++..+. | +...+..|..+|. .| ++++|.++|++.. ..++..+..|...|.. ..|.++|..
T Consensus 270 A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 270 MMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99999998753 4 5677788888887 55 9999999999998 6677788888777665 349999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhcCC
Q 003273 653 AANRLLELESEKDGSYTLLSNIYAN----AGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 653 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 696 (834)
.++++.+. .++.+...|+.+|.. ..+.++|..+++...+.|.
T Consensus 344 ~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 344 HLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998875 457889999999985 4588999999999887764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-11 Score=119.37 Aligned_cols=224 Identities=12% Similarity=-0.027 Sum_probs=182.4
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhH
Q 003273 423 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANC 502 (834)
Q Consensus 423 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 502 (834)
+..++..+...|...|++++|+..|++..+ | .++..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~-----------------------------------~~~~a~~~ 43 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------L-----------------------------------KENSGCFN 43 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------T-----------------------------------TCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------C-----------------------------------CCHHHHHH
Confidence 445566666666677777777777766654 1 34455667
Q ss_pred HHHHHHh----cCCHHHHHHHHhhcC-CCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003273 503 LIDMYSR----SGDIDTARVVFDNLK-QRNVVSWTSLMTGYGM----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573 (834)
Q Consensus 503 li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 573 (834)
+..+|.. .|++++|...|++.. ..+...|..+...|.. .|++++|+..|++..+.+ +...+..+...|
T Consensus 44 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 120 (273)
T 1ouv_A 44 LGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIY 120 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHH
Confidence 7788888 899999999998876 3467788888889998 999999999999998864 677888888888
Q ss_pred Hh----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 003273 574 SH----SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLDEAVELIEGMPMEPTPIIWVALLNGCRI-- 643 (834)
Q Consensus 574 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-- 643 (834)
.. .+++++|..+|+...+. + +...+..+..+|.+ .+++++|.+.+++.....+...+..+...+..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 88 99999999999988753 3 56677888888888 89999999999887333467788888888888
Q ss_pred --cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhcCC
Q 003273 644 --HANVELGELAANRLLELESEKDGSYTLLSNIYAN----AGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 644 --~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 696 (834)
.++.++|...++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999999877 7789999999999 9999999999999987653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-12 Score=137.40 Aligned_cols=155 Identities=14% Similarity=-0.016 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----h
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR----A 599 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 599 (834)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566677777777778888777777665210 111 236777777788888888888888776532111111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------CC
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESE------KD 665 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 665 (834)
..+..+...|.+.|++++|.+.+++.. ..++ ..+|..+...+...|+.+.|...+++++++.+. ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 567778888888888888888887651 1122 457778888899999999999999999887432 34
Q ss_pred chHHHHHHHHHhcCCchh
Q 003273 666 GSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 666 ~~~~~l~~~~~~~g~~~~ 683 (834)
.++..++.+|...|+...
T Consensus 348 ~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHhHH
Confidence 578889999988887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-12 Score=139.89 Aligned_cols=193 Identities=9% Similarity=0.005 Sum_probs=170.5
Q ss_pred cchhHHhHHHHHHHhcCCH-HHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDI-DTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~-~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 570 (834)
.+...+..+...|...|++ ++|...|++.. . .+...|..+...|...|++++|+..|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 5677888899999999999 99999999886 3 4577999999999999999999999999998 678888889999
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 003273 571 YACSHS---------GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA--------NRLDEAVELIEGM-PMEP--- 629 (834)
Q Consensus 571 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 629 (834)
.++... |++++|...|++..+. -+.+...|..+..+|.+. |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999998753 233477899999999998 9999999999987 3345
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 630 -TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 630 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999998765443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.7e-11 Score=120.47 Aligned_cols=227 Identities=13% Similarity=-0.014 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh----cCChhHHHHHHHhhcccCCCCcCCcccH
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ----NGGANDALALFPQMFQQDKLVKPNAFTL 464 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~t~ 464 (834)
.+...+..+...|.+.|++++|...|++... ..+..++..+...|.. .+++++|+..|++..+ .
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~--------- 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--L--------- 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T---------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH--C---------
Confidence 3566778889999999999999999999874 3356778888899999 9999999999998876 2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh----cCCHHHHHHHHhhcC-CCChhHHHHHHHHHH
Q 003273 465 SCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR----SGDIDTARVVFDNLK-QRNVVSWTSLMTGYG 539 (834)
Q Consensus 465 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~ 539 (834)
.++..+..+..+|.. .+++++|...|++.. ..+...+..+...|.
T Consensus 72 ------------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 72 ------------------------------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH 121 (273)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 223444566677777 888888888888776 346778888888888
Q ss_pred H----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 003273 540 M----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSH----SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR 611 (834)
Q Consensus 540 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 611 (834)
. .|++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.+
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHc
Confidence 8 899999999999998854 56667777778887 89999999999988753 245677888889988
Q ss_pred ----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCC
Q 003273 612 ----ANRLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELESEK 664 (834)
Q Consensus 612 ----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 664 (834)
.+++++|++.+++.....+...+..+...+.. .++.++|...++++++++|++
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 99999999999887322346778888888888 899999999999999999853
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=133.57 Aligned_cols=281 Identities=11% Similarity=0.025 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCe----eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003273 281 VSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNV----VTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSL 356 (834)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 356 (834)
..+..+...+...|++++|...|++..+.+.. +. ..|..+...|...|++++|+..|++..+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 116 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA----------- 116 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------
Confidence 34556677888999999999999998887443 32 467788888889999999999888876410
Q ss_pred HHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-------CCccchHH
Q 003273 357 LSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN-------RDVATWTV 429 (834)
Q Consensus 357 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~~~ 429 (834)
...+ ..+....++..+...|...|++++|...|++..... ....+|..
T Consensus 117 ----~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 117 ----KSMN---------------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171 (411)
T ss_dssp ----HHTT---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----HHcc---------------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 0000 112234566777788888888888888877654220 01234555
Q ss_pred HHHHHHhcCC-----------------hhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 003273 430 MIGSYSQNGG-----------------ANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQY 492 (834)
Q Consensus 430 li~~~~~~g~-----------------~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 492 (834)
+...|...|+ +++|++.|++... +. .+.+.
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~------------------------------~~---~~~~~ 218 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK------------------------------LM---RDLGD 218 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH------------------------------HH---HHHTC
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH------------------------------HH---HHcCC
Confidence 5555555565 4444444433322 00 00011
Q ss_pred CccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHH
Q 003273 493 EMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL-APD----GVTFL 567 (834)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~ 567 (834)
.+.....+..+...|...|++++|...|++.. +... .++ ..++.
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-------------------------------RIAREFGDRAAERRANS 267 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------------------HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------------------HHHHhcCCcHHHHHHHH
Confidence 00222344455555555555555555555443 2100 000 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCC----CChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHH
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFGIS----ARAEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWV 635 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~ 635 (834)
.+...+...|++++|..+++...+...-. .....+..+..+|.+.|++++|.+.+++.. ..++ ..++.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 44444555555555555554443211000 013445555556666666666666555441 0011 33666
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003273 636 ALLNGCRIHANVELGELAANRLLELES 662 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p 662 (834)
.+...+...|+.+.|...+++++++.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 677778888888888888888888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9.8e-09 Score=116.42 Aligned_cols=464 Identities=8% Similarity=0.012 Sum_probs=264.4
Q ss_pred chhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---hhHHHHH
Q 003273 116 PDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDT---LSYARQL 192 (834)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~---~~~A~~~ 192 (834)
..+.+..|++.+... +-|..+|..+++.+.+.+.+..++.+++.++.. ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444555555555543 446667888888877777888888888888876 46677788888888888888 8899999
Q ss_pred HHhcCCCCC--CCcchHHHHHHHHHhCCCh--------hHHHHHHHHhhhCCCC-CCCc-cchHhHHHHhhccCCchhhh
Q 003273 193 FDEMFQPGI--CDIVSWNTIVAAYAQSGDA--------EGGLMLFARMTGDVKV-QGDG-VSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 193 ~~~m~~~~~--~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~~-~t~~~~l~a~~~~~~~~~~~ 260 (834)
|++.....+ |++..|...+.-..+.++. +...++|+......|. .|+. ..|...+...........-.
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 988877653 6777888877765554443 3344777776554466 6654 44555554433221111111
Q ss_pred hcCcHHHHHHHHHhcCC-C--C-hhHHH---HHHHHHH----------cCCCHHHHHHHHHHhHhc--CCC---CCee--
Q 003273 261 QCGMMEEAKKVFERMKV-K--D-VVSWN---AMVTGYS----------RIGSFEDAFALFKKMRQE--NVK---LNVV-- 316 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~-~--d-~~~~~---~li~~~~----------~~g~~~~A~~l~~~m~~~--g~~---p~~~-- 316 (834)
..+.++.++++|+.... | + ..+|. .+...+. ...+++.|...+.++... ++. |...
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 33457888888887763 2 1 12332 2222110 001223333344332211 110 0000
Q ss_pred -eHHHHHHHHHhcC-ChhHHHHHHHHHHH---C-CCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCCh
Q 003273 317 -TWSAVIAGYAQRG-HGHEALDVFRQMQF---C-GLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD 390 (834)
Q Consensus 317 -~~~~li~~~~~~g-~~~~A~~l~~~m~~---~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (834)
..+.+ -..+ .....+.++..... . +...+.. ........+++.++. ..+..
T Consensus 286 ~~~~~~----p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~------------~~~~Rv~~~Ye~aL~-------~~p~~ 342 (679)
T 4e6h_A 286 ATESNL----PKPNEYDVQQLLIWLEWIRWESDNKLELSDD------------LHKARMTYVYMQAAQ-------HVCFA 342 (679)
T ss_dssp CCTTTS----CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH------------HHHHHHHHHHHHHHH-------HTTTC
T ss_pred chhccC----CCCchhHHHHHHHHHHHHHHHHhCCccccch------------hhHHHHHHHHHHHHH-------HcCCC
Confidence 00000 0000 00111222222111 0 0000000 011233455666665 34556
Q ss_pred hhHHHHHHHHHHhCCChHHHH-HHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC---------cC
Q 003273 391 LMVINALIDMYAKCKSVDVAR-VMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV---------KP 459 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~~~~A~-~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~---------~p 459 (834)
..+|...+..+.+.|+.++|. .+|++.....| +...|-..+...-+.|++++|.++|++++. ... .|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~--~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID--RIHLDLAALMEDDP 420 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHhhhhhhccC
Confidence 667777777777777777775 77777654445 344566666667777788888888877765 210 13
Q ss_pred C------------cccHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCccchhHHhHHHHHHHhcC-CHHHHHHHHhhcC-
Q 003273 460 N------------AFTLSCALMACARLAALRFGRQIHAYVLRN-QYEMLIPFVANCLIDMYSRSG-DIDTARVVFDNLK- 524 (834)
Q Consensus 460 ~------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~~~- 524 (834)
+ ...|...+....+.+.++.|+.++..+.+. +. ....+|...+.+-.++| +.+.|.++|+...
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~--~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL--VTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG--SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2 235666667777778888888888888876 32 23344444444444544 4888888888776
Q ss_pred --CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChH
Q 003273 525 --QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAE 600 (834)
Q Consensus 525 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 600 (834)
..+...|...+.-....|+.+.|..+|++.+.....|. ...|...+.--...|+.+.+..+.+.+.+.+ |+..
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~ 575 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVN 575 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCC
T ss_pred HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCc
Confidence 34666777777777778888888888888887532222 3557777777777888888888888887643 3433
Q ss_pred HHHHHHHHHhh
Q 003273 601 HYACIVDLLGR 611 (834)
Q Consensus 601 ~~~~l~~~~~~ 611 (834)
....+++-|.-
T Consensus 576 ~~~~f~~ry~~ 586 (679)
T 4e6h_A 576 KLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHHhcC
Confidence 44444555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=127.37 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCC----eeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLN----VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 357 (834)
.+......+...|++++|...|+++.+.... + ...|..+...+...|++++|++.+++..+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 3445566788889999999999988876433 2 3567778888888889888888888776410
Q ss_pred HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---CC----ccchHHH
Q 003273 358 SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKN---RD----VATWTVM 430 (834)
Q Consensus 358 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~----~~~~~~l 430 (834)
...+ ..+....++..+...|...|++++|...|++..... ++ ..++..+
T Consensus 74 ---~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 74 ---RTIG---------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129 (338)
T ss_dssp ---HHHT---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hccc---------------------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 0000 111224456677788888888888888887754211 11 2245556
Q ss_pred HHHHHhcCC
Q 003273 431 IGSYSQNGG 439 (834)
Q Consensus 431 i~~~~~~g~ 439 (834)
...|...|+
T Consensus 130 ~~~~~~~~~ 138 (338)
T 3ro2_A 130 GNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCc
Confidence 666666666
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-11 Score=112.52 Aligned_cols=166 Identities=16% Similarity=0.083 Sum_probs=144.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++.+|..|...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 567889999999999999999999999887 34677899999999999999999999999988 4565 66777788
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVE 648 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 648 (834)
..+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+.+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8899999999999999988753 2345778889999999999999999999887 2334 5778999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 003273 649 LGELAANRLLELESEK 664 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~ 664 (834)
+|+..++++++++|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999999965
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-11 Score=138.09 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACI 605 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 605 (834)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45677777777777777777777777777 5675 66777777778888888888888877763 3443 6677778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
..+|.+.|++++|++.|++. ...| +...|..+...+...|+.++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888887766 3334 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003273 684 VARIRSLMKH 693 (834)
Q Consensus 684 a~~~~~~m~~ 693 (834)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-10 Score=120.89 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=148.5
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCC---CCC----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPK---NRD----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
.....+...|++++|...|++.... .++ ..+|..+...|...|++++|+..+.+.++ +.+....+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~---- 179 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----IYKEHEAY---- 179 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHTCSTT----
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHhCccc----
Confidence 3666778889999999998887543 122 35677888888888888888888888765 21111100
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYG 539 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~ 539 (834)
.+....+++.+...|...|++++|...|++..+ ++ ..+|..+...|.
T Consensus 180 ------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 180 ------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 002334567777888888888888888876651 22 136777788888
Q ss_pred HcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHhh
Q 003273 540 MHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISARAEHYACIVDLLGR 611 (834)
Q Consensus 540 ~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~l~~~~~~ 611 (834)
..|++++|+..|++..+. +..|+ ..++..+...+...|++++|..+++...+.. +-+.....+..+..+|..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 888888888888887762 23244 5667777778888888888888887765321 111112234556666777
Q ss_pred cCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003273 612 ANR---LDEAVELIEGMPMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL 660 (834)
Q Consensus 612 ~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 660 (834)
.|+ +++|+.++++....|+ ...+..+...+...|+.+.|...+++++++
T Consensus 316 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 776 6667776666643332 223444444555555555555555555554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-10 Score=117.91 Aligned_cols=217 Identities=12% Similarity=0.097 Sum_probs=160.6
Q ss_pred HHHHHHHHhcCCCCC-CccchHHHHHHHHh-------cCCh-------hHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 408 DVARVMFDAIAPKNR-DVATWTVMIGSYSQ-------NGGA-------NDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 408 ~~A~~~f~~~~~~~~-~~~~~~~li~~~~~-------~g~~-------~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
++|..+|++.....| +...|..++..+.. .|+. ++|...|++.+. .+.|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~---~~~p------------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS---TLLK------------- 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT---TTTT-------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH---HhCc-------------
Confidence 566667776654334 55567666666543 3554 566666666553 0123
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--R-NVV-SWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~ 548 (834)
.+..++..++..+.+.|++++|..+|+++.+ | +.. .|..++..+.+.|+.++|.
T Consensus 97 ----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 97 ----------------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred ----------------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHH
Confidence 4556778888888899999999999998763 4 343 7999999999999999999
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHH-hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 549 WAFDQMRKEGLAPD-GVTFLVLLYACS-HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 549 ~l~~~m~~~g~~p~-~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
.+|++.++. .|+ ...|........ ..|++++|..+|+...+.. +.+...|..+++.+.+.|++++|..+|++.-
T Consensus 155 ~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 155 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999884 454 444544433322 3699999999999887642 2357788999999999999999999998872
Q ss_pred ----CCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 627 ----MEP--TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 627 ----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
..| ....|..++.....+|+.+.|..+++++++..|++..
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 244 3568999999999999999999999999999998653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-10 Score=110.65 Aligned_cols=178 Identities=10% Similarity=-0.086 Sum_probs=89.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK---Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLY 571 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 571 (834)
+..+..+...|.+.|++++|...|++.. . ++...|..+...+...|++++|+..|++.++ ..|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444444444555555555555555443 1 3444444444455555555555555555554 3443 334444444
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISARA-----EHYACIVDLLGRANRLDEAVELIEGM-PMEPT---PIIWVALLNGCR 642 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~ 642 (834)
++...|++++|...++...+...-.+.. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555555444321111100 23444444455555555555555444 22333 234444444444
Q ss_pred hcCc---------------------------HHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 643 IHAN---------------------------VELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 643 ~~g~---------------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
..|+ ++.|...++++++++|+++.+...+..+..
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 4443 488888889999999988877777766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.7e-10 Score=114.37 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=158.5
Q ss_pred cchhHHhHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYS-------RSGDI-------DTARVVFDNLKQ---R-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 495 ~~~~~~~~li~~y~-------k~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.++.++..++..+. +.|++ ++|..+|++... | +...|..++..+.+.|++++|..+|+++++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45556666666554 35775 899999998763 3 456899999999999999999999999998
Q ss_pred cCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh-hcCCHHHHHHHHHhC-CC-CCCH
Q 003273 557 EGLAPD-GV-TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLG-RANRLDEAVELIEGM-PM-EPTP 631 (834)
Q Consensus 557 ~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~-~p~~ 631 (834)
+.|+ .. .|..+...+.+.|++++|..+|+...+. .+++...|...+.... ..|++++|.++|++. .. +.+.
T Consensus 128 --~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 128 --IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp --SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred --ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 6786 33 7999999999999999999999999742 2334555554444432 369999999999987 11 2357
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLEL---ESE-KDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
..|..++..+...|+.+.|..+++++++. .|+ ....+..++..+...|++++|..+++.+.+..
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999996 553 56788999999999999999999999988754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=124.16 Aligned_cols=231 Identities=8% Similarity=-0.054 Sum_probs=170.4
Q ss_pred HHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh
Q 003273 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509 (834)
Q Consensus 430 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 509 (834)
....+...|++++|+..|++....-. -.+|.. ....++..+...|..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~--------------------------------~~a~~~~~lg~~~~~ 155 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLI-FVKDRI--------------------------------EKAEFFFKMSESYYY 155 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh-hCCCHH--------------------------------HHHHHHHHHHHHHHH
Confidence 45567788999999999998876100 012111 234566778888888
Q ss_pred cCCHHHHHHHHhhcCC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCC-hhHHHHHHHHHH
Q 003273 510 SGDIDTARVVFDNLKQ-----RN-----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG----LAPD-GVTFLVLLYACS 574 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~ 574 (834)
.|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++.++.. -.+. ..++..+...|.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9998888888877651 22 3478888999999999999999999988631 1111 357888999999
Q ss_pred hcCCHHHHHHHHHHhHHh---cCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHh
Q 003273 575 HSGMVDQGLKYFDSMSKE---FGI-SARAEHYACIVDLLGRANRLDEAVELIEGMP----M--EPT-PIIWVALLNGCRI 643 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~ll~~~~~ 643 (834)
..|++++|..++++..+- .+. +.....+..+...|.+.|++++|.+.+++.- . .|. ...+..+...+..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999999987652 123 2336678899999999999999999998762 1 122 2235666667888
Q ss_pred cCc---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 644 HAN---VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 644 ~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+ .+.|...+++. ...|.....+..|+.+|...|++++|...+++..+.
T Consensus 316 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888 66677776665 334445568889999999999999999999988753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-10 Score=125.90 Aligned_cols=177 Identities=10% Similarity=-0.012 Sum_probs=157.1
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 513 IDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLG-DKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 513 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
+++|...++... ..+...|..+...|...|++ ++|+..|++.++ ..|+ ...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666554 34678899999999999999 999999999999 5676 7889999999999999999999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CcHH
Q 003273 588 SMSKEFGISARAEHYACIVDLLGRA---------NRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH--------ANVE 648 (834)
Q Consensus 588 ~m~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 648 (834)
... .+.|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 987 5678888999999999999 9999999999987 2334 578999999999988 9999
Q ss_pred HHHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 649 LGELAANRLLELES---EKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 649 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+|+..++++++++| +++.+|..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=125.85 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=118.6
Q ss_pred CCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCC--------CC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 003273 387 HPDDLMVINALIDMYAKCKSVDVARVMFDAIAPK--------NR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLV 457 (834)
Q Consensus 387 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~ 457 (834)
.+.+..++..+...|...|++++|...|+++... .+ ....|..+...|...|++++|+..|++++. .
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~-- 98 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA--I-- 98 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--H--
Confidence 3445677888888999999999999988887641 22 345677788888888888888888887765 1
Q ss_pred cCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----
Q 003273 458 KPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------R---- 526 (834)
Q Consensus 458 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~---- 526 (834)
. ..... +..+....++..+...|...|++++|...|+++.+ +
T Consensus 99 ~--------------------------~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (311)
T 3nf1_A 99 R--------------------------EKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151 (311)
T ss_dssp H--------------------------HHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred H--------------------------HHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 0 00000 00113445567777788888888888887776641 1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE------GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
....|..+...|...|++++|+..|+++.+. +..|+ ..++..+..++...|++++|..+++.+.+
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345677777778888888888888887763 22343 45577777778888888888888877764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=125.47 Aligned_cols=240 Identities=12% Similarity=0.125 Sum_probs=164.1
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
..+|..+...|...|++++|+.+|+++.+ . .. ........ ....++..+
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~--~~--------------------------~~~~~~~~-~~~~~~~~l 75 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE--D--LE--------------------------KTSGHDHP-DVATMLNIL 75 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--HH--------------------------HHHCSSSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H--HH--------------------------HHcCCCCH-HHHHHHHHH
Confidence 45677777888888888888888887765 1 00 00000011 445667788
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-hhH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQ-------R----NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE------GLAPD-GVT 565 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t 565 (834)
...|...|++++|...|++... + ...+|..+...|...|++++|+..|+++.+. +..|+ ...
T Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8889999999999988887751 1 2457888899999999999999999998874 23344 566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEF-----GISA-RAEHYACIVDLLGRANRLDEAVELIEGMP----------MEP 629 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 629 (834)
+..+...+...|++++|..+++.+.+.. +..| ....+..+..+|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 8888889999999999999999887531 1122 35678889999999999999999998762 111
Q ss_pred C-HHHHHH------HHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 630 T-PIIWVA------LLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 630 ~-~~~~~~------ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
. ...|.. +...+...+....+...++++....|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 112222 2222334445555666777777788888899999999999999999999999988653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-10 Score=106.29 Aligned_cols=161 Identities=12% Similarity=0.014 Sum_probs=97.4
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYAC 573 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 573 (834)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .|+ ...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 4445556666666666666666666552 24445555556666666666666666666552 332 44455555555
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 003273 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELA 653 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 653 (834)
...|++++|.++++.+.+. .+.+...|..+...+...|+.+.|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555555555544421 123455666666666677777777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 654 ANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 654 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++++++..|+++.++..++.+|...|++++|.+.++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=103.34 Aligned_cols=167 Identities=15% Similarity=0.004 Sum_probs=128.9
Q ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 003273 462 FTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGY 538 (834)
Q Consensus 462 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 538 (834)
..+..+...+...|+++.|...+..+.+... .+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA--FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455667778889999999999988876543 567888999999999999999999999876 34677899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
...|++++|...|+++.+. .| +...+..+..++...|++++|..+++.+.+. .|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~-------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP-------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT--------------------
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc--------------------
Confidence 9999999999999999984 44 4677788888888888999988888877643 11
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 618 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.+...|..+...+...|+.+.|...+++++++.|+++.
T Consensus 142 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 -----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred -----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 23445555555666666666666666666666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.4e-10 Score=108.47 Aligned_cols=153 Identities=14% Similarity=0.037 Sum_probs=132.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 003273 526 RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYAC 604 (834)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 604 (834)
.|+..|......+...|++++|+..|++.++....++...+..+..++...|++++|+..|+...+ ..| +...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 466788889999999999999999999999964336777888899999999999999999999874 345 4678899
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEP-TP-------IIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSN 673 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 673 (834)
+..+|.+.|++++|++.+++. ...| +. ..|..+...+...|+.+.|+..++++++++|+ ++.++..++.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999887 2233 34 45788888899999999999999999999999 8899999999
Q ss_pred HHHhcCCc
Q 003273 674 IYANAGRW 681 (834)
Q Consensus 674 ~~~~~g~~ 681 (834)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988887
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-08 Score=109.52 Aligned_cols=267 Identities=13% Similarity=0.028 Sum_probs=179.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCc------cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDV------ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
..+...+...|++++|...+++.....|+. ..++.+...|...|++++|...+++... +.|+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~------- 86 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ----MARQH------- 86 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHT-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----HHHhc-------
Confidence 344456667888888888877754322221 1345566667777888888887777665 11110
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ----------R-NVVSWTSLMTG 537 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~ 537 (834)
+...........+...|...|++++|...+++... | ....+..+...
T Consensus 87 ----------------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 87 ----------------------DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 00001123345667778888888888888876651 1 12356667778
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC--C--ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLA--P--DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA-----CIVDL 608 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~ 608 (834)
+...|++++|...+++....... | ...++..+...+...|++++|..+++.......-......+. ..+..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 88999999999999998874322 1 134577777888899999999999998764322111111121 23455
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC------CchHHHHHHHHH
Q 003273 609 LGRANRLDEAVELIEGMP-MEPT-----PIIWVALLNGCRIHANVELGELAANRLLELESEK------DGSYTLLSNIYA 676 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~ 676 (834)
+...|++++|...+++.. ..|. ...+..+...+...|+.++|...++++++..+.. ...+..++.+|.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 778999999999998873 1221 2256677778889999999999999988764431 136778899999
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|...++.....
T Consensus 305 ~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-09 Score=110.22 Aligned_cols=233 Identities=9% Similarity=0.027 Sum_probs=140.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCC---CC----ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHH
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKN---RD----VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA 467 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l 467 (834)
......+...|++++|...|++..... ++ ...+..+...|...|++++|+..+.+..+ +.+....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~----~~~~~~~~--- 177 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD----IYQNHPLY--- 177 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHTSTTC---
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH----HHHhCCCc---
Confidence 344556677888888888888765321 22 34566777778888888888888777765 11111000
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHH
Q 003273 468 LMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGY 538 (834)
Q Consensus 468 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 538 (834)
.+....+++.+...|...|++++|...|++..+ ++ ..+++.+...|
T Consensus 178 -------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 178 -------------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 002234556777788888888888887776641 22 23566777777
Q ss_pred HHcCChHHHHHHHHHHHHcC---CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhh
Q 003273 539 GMHGLGDKAHWAFDQMRKEG---LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI---SARAEHYACIVDLLGR 611 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g---~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~~ 611 (834)
...|++++|+..|++..+.. ..|+ ..++..+...+...|++++|..+++...+...- +.....+..+...|..
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 78888888888887776510 1232 556777777777888888888887776543221 1123345555566666
Q ss_pred cCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 612 ANR---LDEAVELIEGMPMEPTP-IIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 612 ~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
.|+ +++|+..+++....|+. ..+..+...+...|+.+.|...++++++
T Consensus 313 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666 66666666665422222 2334444445555555555555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.9e-10 Score=126.99 Aligned_cols=164 Identities=12% Similarity=0.159 Sum_probs=145.1
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..++.|...|.+.|++++|.+.|++.. .| +...|+.+...|.+.|++++|+..|++.++ +.|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 567788999999999999999999999887 34 577999999999999999999999999999 6787 78899999
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANV 647 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 647 (834)
.++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. ...|+ ...|..|...+...|+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999874 345 4778999999999999999999999987 34454 77899999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 003273 648 ELGELAANRLLELESE 663 (834)
Q Consensus 648 ~~a~~~~~~~~~~~p~ 663 (834)
++|++.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999887553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-09 Score=111.71 Aligned_cols=305 Identities=10% Similarity=-0.021 Sum_probs=205.6
Q ss_pred CCCChhhHHHHHHHHH--HhCCChHHHHHHHHhcCCC------CCCccchHHHHHHH--HhcCChhHHH---------HH
Q 003273 386 SHPDDLMVINALIDMY--AKCKSVDVARVMFDAIAPK------NRDVATWTVMIGSY--SQNGGANDAL---------AL 446 (834)
Q Consensus 386 ~~~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~~------~~~~~~~~~li~~~--~~~g~~~~A~---------~l 446 (834)
...|+..+.+.|-+-| .+.+++++|..+++++... ..++..|-.++..- ...+....+. +.
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 3456677777787777 8899999999999876421 12333333333221 1112222222 55
Q ss_pred HHhhcccCCCCcCCc-c---cHHHHHHHHhhhhhHHHHHHHHHHHHHhCC----CccchhHHhHHHHHHHhcCCHHHHHH
Q 003273 447 FPQMFQQDKLVKPNA-F---TLSCALMACARLAALRFGRQIHAYVLRNQY----EMLIPFVANCLIDMYSRSGDIDTARV 518 (834)
Q Consensus 447 ~~~m~~~~~g~~p~~-~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (834)
++.+.. .....+. . .+...-..+...|+++.|...+..+.+... .+....++..+...|...|++++|..
T Consensus 85 l~~i~~--~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 85 LETIET--PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHG--GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhc--cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 555432 1111111 1 111222345678999999999999886421 11345677889999999999999998
Q ss_pred HHhhcCC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 003273 519 VFDNLKQ-----RN-----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 519 ~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+++..+ ++ ..+++.+...|...|++++|++.|++..+. +..+. ..++..+..++...|++++|.
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 8887651 22 347888999999999999999999998763 11111 456888889999999999999
Q ss_pred HHHHHhHHhc---CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCc---HHHH
Q 003273 584 KYFDSMSKEF---GISARAEHYACIVDLLGRANRLDEAVELIEGM----PM--EPT-PIIWVALLNGCRIHAN---VELG 650 (834)
Q Consensus 584 ~~~~~m~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a 650 (834)
.+|++..+-. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ .+.|
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999886511 22233667888999999999999999999876 11 222 2345555555777777 6666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
...+++. ...|.....+..++.+|...|++++|...+++..+
T Consensus 323 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 323 LSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666652 22344456788999999999999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-08 Score=105.77 Aligned_cols=276 Identities=12% Similarity=0.029 Sum_probs=171.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCee----eHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----hHH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVV----TWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPNV----VTL 353 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~ 353 (834)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677899999999998877654322221 456666778888999999999888765311 1122 224
Q ss_pred HHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCC-CChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCC------ccc
Q 003273 354 VSLLSGCASVGALLLGKETHCYTIKRVLSVDGSH-PDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRD------VAT 426 (834)
Q Consensus 354 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~------~~~ 426 (834)
..+...+...|+++.|...+...+.......... +....++..+...|...|++++|...+++.....+. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4555667788999999988888877543221111 223456677888889999999999888875422221 234
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHH
Q 003273 427 WTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDM 506 (834)
Q Consensus 427 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 506 (834)
|..+...+...|++++|...+++... ..-.++.... .........+..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~--~~~~~~~~~~------------------------------~~~~~~~~~~~~ 224 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLEN--LLGNGKYHSD------------------------------WISNANKVRVIY 224 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCCCHH------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HHhccCcchh------------------------------HHHHHHHHHHHH
Confidence 56666777778888888888877754 1111111000 000001133455
Q ss_pred HHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHH
Q 003273 507 YSRSGDIDTARVVFDNLKQRN-------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPDG-VTFLVLLYACS 574 (834)
Q Consensus 507 y~k~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~ 574 (834)
+...|++++|...+++...++ ...+..+...+...|++++|...+++.... |..++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 778889999998888877432 124556667777888888888888776552 111122 24445555666
Q ss_pred hcCCHHHHHHHHHHhH
Q 003273 575 HSGMVDQGLKYFDSMS 590 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~ 590 (834)
..|+.++|...++...
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 6777777777666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-09 Score=107.65 Aligned_cols=219 Identities=11% Similarity=0.112 Sum_probs=151.4
Q ss_pred hhhHHHHHHHHHHHHH-------hCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHH
Q 003273 474 LAALRFGRQIHAYVLR-------NQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-------R----NVVSWTSLM 535 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li 535 (834)
.|+++.|..++...++ ...+ ....++..+...|...|++++|...|+++.+ + ...+|..+.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555555443 2222 5677888899999999999999999987751 1 245788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-ChHHH
Q 003273 536 TGYGMHGLGDKAHWAFDQMRKE------GLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF-----GISA-RAEHY 602 (834)
Q Consensus 536 ~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~ 602 (834)
..|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. .-.| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998874 11344 6678888889999999999999999887531 1122 35678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCc------HHHHHHHHHHHHhcCCCCC
Q 003273 603 ACIVDLLGRANRLDEAVELIEGMP----------MEPT-PIIWVALLNGCRIHAN------VELGELAANRLLELESEKD 665 (834)
Q Consensus 603 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~ 665 (834)
..+..+|.+.|++++|.+.++++. ..+. ...|..+.......+. ...+...++.+....|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 889999999999999999987651 1222 2344444433333222 2333333333333445566
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 666 GSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 666 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.++..++.+|...|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=101.47 Aligned_cols=204 Identities=9% Similarity=-0.019 Sum_probs=130.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hh
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD----GV 564 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ 564 (834)
.++..+-.+...+.+.|++++|...|+++. .|+ ...|..+..+|.+.|++++|+..|++.++. .|+ ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHH
Confidence 445555566666677777777777777665 232 345666666677777777777777777663 332 33
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003273 565 TFLVLLYACSH--------SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVA 636 (834)
Q Consensus 565 t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 636 (834)
.+..+..++.. .|++++|...|+.+.+.+.-.+ .....+..+....+.+ ...+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 45555556666 6677777777766654321111 1111111111000000 112456
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCchhHHHHHHHHHhcCCccCCcee
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANA----------GRWKDVARIRSLMKHTGVKKRPGCS 703 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s 703 (834)
+...+...|+++.|+..++++++..|+++ .++..++.+|... |++++|...++.+.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 77778999999999999999999999854 4789999999977 899999999999876421
Q ss_pred EEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 003273 704 WVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740 (834)
Q Consensus 704 ~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 740 (834)
.+|...+....+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.6e-09 Score=104.91 Aligned_cols=163 Identities=12% Similarity=0.124 Sum_probs=118.4
Q ss_pred cCCCchHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCC-------CCC-CcchHHHHH
Q 003273 147 ELPSSRCGSSVHAVICSS-------GFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQP-------GIC-DIVSWNTIV 211 (834)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-------~~~-~~~~~~~li 211 (834)
..|+++.|..++++.++. ..+....++..+...|...|++++|...|++.... ..| ...+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 11234567888999999999999999998876532 112 566799999
Q ss_pred HHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 003273 212 AAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYS 291 (834)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~ 291 (834)
..|...|++++|+..|++.... ..+....-......++..+...|.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~----------------------------------~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEI----------------------------------REKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH----------------------------------HHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH----------------------------------HHHHcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999887642 000000000123567888999999
Q ss_pred cCCCHHHHHHHHHHhHhc------CCCC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003273 292 RIGSFEDAFALFKKMRQE------NVKL-NVVTWSAVIAGYAQRGHGHEALDVFRQMQF 343 (834)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 343 (834)
..|++++|...|++.... +-.| ...++..+...|...|++++|+..|++..+
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999988765 1122 456788889999999999999999999876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-08 Score=103.26 Aligned_cols=164 Identities=9% Similarity=-0.061 Sum_probs=83.7
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-----
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYGMH-GLGDKAHWAFDQMRKEGLAPD----- 562 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 562 (834)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 4455566666666666666666655541 11 23555666666664 666666666666655 2221
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH--
Q 003273 563 --GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARA-----EHYACIVDLLGRANRLDEAVELIEGM-PMEPTPI-- 632 (834)
Q Consensus 563 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 632 (834)
..++..+...+...|++++|+.+|+...+...-.+.. ..|..++.++...|++++|...+++. ...|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2345555666666666666666666655321111111 13455555666666666666666655 2223211
Q ss_pred ----HHHHHHHHHH--hcCcHHHHHHHHHHHHhcCCC
Q 003273 633 ----IWVALLNGCR--IHANVELGELAANRLLELESE 663 (834)
Q Consensus 633 ----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~ 663 (834)
.+..++.++. ..++++.|...++++.+++|.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2233334443 234455566665555555553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=105.10 Aligned_cols=198 Identities=7% Similarity=-0.014 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHH
Q 003273 476 ALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYGMHGLGDK 546 (834)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~ 546 (834)
+++.|...+..+ ...|...|++++|...|.+... .+ ..+|+.+...|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 467666666443 4567889999999999887752 12 4589999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCC
Q 003273 547 AHWAFDQMRKEGLAPD-------GVTFLVLLYACSHS-GMVDQGLKYFDSMSKEFGISAR----AEHYACIVDLLGRANR 614 (834)
Q Consensus 547 A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~ 614 (834)
|+..|++.++. .|+ ..++..+..+|... |++++|+..|++..+-..-..+ ...+..+...|.+.|+
T Consensus 96 A~~~~~~Al~l--~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 96 AVDSLENAIQI--FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 99999998873 221 35788889999996 9999999999988753211111 4568889999999999
Q ss_pred HHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hc
Q 003273 615 LDEAVELIEGM-PMEP---TP-----IIWVALLNGCRIHANVELGELAANRLLELESEKDGS-----YTLLSNIYA--NA 678 (834)
Q Consensus 615 ~~~A~~~~~~~-~~~p---~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 678 (834)
+++|++.+++. ...| .. ..|..+...+...|+.+.|+..++++++++|+.... +..++..|. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999999886 2222 21 156777778889999999999999999999986543 344566664 45
Q ss_pred CCchhHHHHHHHH
Q 003273 679 GRWKDVARIRSLM 691 (834)
Q Consensus 679 g~~~~a~~~~~~m 691 (834)
+++++|...++.+
T Consensus 254 ~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 254 EQLSEHCKEFDNF 266 (292)
T ss_dssp TTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccC
Confidence 6788888777554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-08 Score=100.48 Aligned_cols=202 Identities=11% Similarity=-0.037 Sum_probs=143.1
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc-cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----hhHHHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEM-LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----VVSWTS 533 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----~~~~~~ 533 (834)
...+......+...|+++.|...+..+++..... ..+..+..+...|.+.|++++|...|++.. .|+ ...|..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3455566677888999999999999998865421 126778889999999999999999999887 232 346777
Q ss_pred HHHHHHH--------cCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003273 534 LMTGYGM--------HGLGDKAHWAFDQMRKEGLAPDG-VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604 (834)
Q Consensus 534 li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 604 (834)
+..++.. .|++++|+..|++.++ ..|+. .....+. .+..+... -...+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 7888888 9999999999999998 45653 2222211 11111110 0122556
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcCCCCCc---
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIH----------ANVELGELAANRLLELESEKDG--- 666 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~--- 666 (834)
+...|.+.|++++|+..++++ ...|+ ...|..+..++... |+.++|+..++++++..|+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 778888888888888888776 12232 34666677777655 8899999999999999998863
Q ss_pred hHHHHHHHHHhcCCchh
Q 003273 667 SYTLLSNIYANAGRWKD 683 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~ 683 (834)
++..+..++...|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45556666665555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=97.84 Aligned_cols=137 Identities=10% Similarity=0.025 Sum_probs=86.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 616 (834)
...|++++|+..+++... ..|+ ...+..+...|...|++++|++.|++..+ +.| +...|..+..+|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchH
Confidence 344555555555555444 3333 34444555556666666666666665553 223 3455556666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 617 EAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELA-ANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 617 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
+|+..|++. ...| +...|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666554 2234 466788888888888887665554 689999999999999999988888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-08 Score=100.42 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=138.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 003273 515 TARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF 593 (834)
Q Consensus 515 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 593 (834)
.....+......+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 334444444444556677788888999999999999999998 5776 67788888999999999999999998763
Q ss_pred CCCCChHHHHHHH-HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--CchH
Q 003273 594 GISARAEHYACIV-DLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEK--DGSY 668 (834)
Q Consensus 594 ~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 668 (834)
..|+........ -.+.+.|+.++|.+.+++. ... .+...+..+...+...|+.++|...++++++.+|++ ..++
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 355544333333 3366778888888888776 223 457789999999999999999999999999999988 7899
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Q 003273 669 TLLSNIYANAGRWKDVARIRSLMK 692 (834)
Q Consensus 669 ~~l~~~~~~~g~~~~a~~~~~~m~ 692 (834)
..|+.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=9.5e-08 Score=93.69 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=118.0
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDG----VT 565 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 565 (834)
++..+..+...+.+.|++++|...|+++. .|+ ...+..+..+|.+.|++++|+..|++.++ ..|+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 34455566777888888888888888776 243 24677777888888888888888888887 44542 23
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 566 FLVLLYACSH------------------SGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 566 ~~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
+..+..++.. .|++++|...|+.+.+. .|+. ..+.+... .+.+.+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH-------
Confidence 4444444443 34555555555555432 2221 11111100 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 003273 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 627 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 696 (834)
......+...+...|+.+.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112445567889999999999999999999876 5789999999999999999999999887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.3e-09 Score=118.80 Aligned_cols=147 Identities=10% Similarity=-0.094 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACI 605 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 605 (834)
...|..+...|.+.|++++|+..|+++++ ..|+ ...+..+..++...|++++|...|++..+ +.| +...|..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 34455555555555555555555555555 3343 44455555555555555555555555542 122 23445555
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 606 VDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
..+|.+.|++++ ++.|++. ...| +...|..+..++...|+.++|+..++++++++|++..++..++.+|...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 5555444 1122 344555555555555555555555555555555555555555555544443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-08 Score=85.47 Aligned_cols=128 Identities=17% Similarity=0.238 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
.|..+...+...|++++|+.+|+++.+. .| +...+..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------ 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------ 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C------------
Confidence 4556666666677777777777776663 23 3455555566666666666666666655432 1
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 003273 609 LGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+.+...|..+...+...|+.+.|...++++++..|++...+..++.+|...|++++|...+
T Consensus 66 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 66 -------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 1234455555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHh
Q 003273 689 SLMKH 693 (834)
Q Consensus 689 ~~m~~ 693 (834)
+.+.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.6e-08 Score=84.38 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=92.9
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHH
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACS 574 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 574 (834)
.+..+...|...|++++|..+|+++. ..+...|..+...+...|++++|...|+++.+. .| +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 56788899999999999999999876 346778999999999999999999999999984 45 4667888888889
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 575 HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
..|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.+++
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999999887643 122344444555555555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-07 Score=91.93 Aligned_cols=174 Identities=15% Similarity=0.026 Sum_probs=127.4
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 516 ARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 516 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666655 34555666777888888999999999998877543234 56677778889999999999999998864
Q ss_pred hcCCCC-----ChHHHHHHHHH----HhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 003273 592 EFGISA-----RAEHYACIVDL----LGRANRLDEAVELIEGMP-MEPTPIIWVALLNGCRIHANVELGELAANRLLEL- 660 (834)
Q Consensus 592 ~~~~~p-----~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 660 (834)
..| +..+...+..+ ....+++.+|..+|+++. ..|+..+-..|++++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 355 24444445444 223348999999999883 2355333344555788889999999999988876
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 661 ---------ESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 661 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+|+|+.++..++.++...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888888888888887 888999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=108.95 Aligned_cols=168 Identities=14% Similarity=0.019 Sum_probs=131.0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.+...+..+...|.+.|++++|...|+++. ..+...|..+...|.+.|++++|+..|++.++ ..|+ ...+..+.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg 508 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALA 508 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 556667778888899999999999998887 34677899999999999999999999999998 5775 67788899
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCc-
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHAN- 646 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~- 646 (834)
.++...|++++ .+.|+...+ +.| +...|..+..+|.+.|++++|++.++++ ...|+ ...|..+..++...++
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999 999998874 344 4678889999999999999999999998 45566 4577777777666554
Q ss_pred ----HHHHHHHHHHHHhcCCCCCchH
Q 003273 647 ----VELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 647 ----~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
.+...++.+.+.++.++++..+
T Consensus 585 ~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 585 SEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp --CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred CCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 3455556666666666555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-08 Score=92.21 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=92.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-Hhhc
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL-LGRA 612 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~ 612 (834)
...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...++.+.+. .|+...+..+... +.+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344444555555555554444 2343 344444444555555555555555544321 2222221111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchhHHHHH
Q 003273 613 NRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEK--DGSYTLLSNIYANAGRWKDVARIR 688 (834)
Q Consensus 613 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 688 (834)
+...+|.+.+++. ...| +...|..+...+...|+.++|+..++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555544 2234 57788889999999999999999999999999875 558999999999999999999998
Q ss_pred HHHHh
Q 003273 689 SLMKH 693 (834)
Q Consensus 689 ~~m~~ 693 (834)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=106.92 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=122.7
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003273 510 SGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKY 585 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 585 (834)
.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888762 3567889999999999999999999999998 5675 77888899999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhc
Q 003273 586 FDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH---ANVELGELAANRLLEL 660 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 660 (834)
+++..+. -+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9988753 2334678889999999999999999999887 2233 577888899999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 003273 661 ESEKDGSYTLLS 672 (834)
Q Consensus 661 ~p~~~~~~~~l~ 672 (834)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=91.24 Aligned_cols=154 Identities=10% Similarity=0.026 Sum_probs=114.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC-h
Q 003273 504 IDMYSRSGDIDTARVVFDNLK--QR-NVVSWTS----------------LMTGYGMHGLGDKAHWAFDQMRKEGLAPD-G 563 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 563 (834)
...+.+.|++++|...|++.. .| +...|.. +...|.+.|++++|+..|++.++ ..|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 344556677777777776665 22 2334555 88889999999999999999998 5775 7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCH--HHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANR--LDEAVELIEGMPMEPTP--IIWVALL 638 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~ll 638 (834)
..+..+..++...|++++|...|++..+ +.| +...+..+..+|...|. .+++...++... .|+. ..|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 7888999999999999999999999875 345 46788888888876654 445666676664 3443 3455556
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 639 NGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 639 ~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
.++...|+.++|+..+++++++.|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6677789999999999999999996
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=90.71 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=101.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHA 645 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 645 (834)
|...+...|++++|+..+.... ...|+ ...+..+..+|.+.|++++|++.|++. ...| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455667789999999998775 34454 445667899999999999999999987 3344 5789999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH-HHHHHh
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI-RSLMKH 693 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 693 (834)
+.+.|+..++++++++|+++.++..++.+|...|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987775 466655
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.3e-07 Score=87.32 Aligned_cols=172 Identities=10% Similarity=-0.001 Sum_probs=134.0
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHhH
Q 003273 516 ARVVFDNLK-QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG----MVDQGLKYFDSMS 590 (834)
Q Consensus 516 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 590 (834)
|.+.|++.. ..+...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444443 3567778888888888888889999998888754 45667777777777 6 8899999998886
Q ss_pred HhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh----cCcHHHHHHHHHHHH
Q 003273 591 KEFGISARAEHYACIVDLLGR----ANRLDEAVELIEGMPME-PT---PIIWVALLNGCRI----HANVELGELAANRLL 658 (834)
Q Consensus 591 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 658 (834)
+. -+...+..|..+|.. .+++++|++++++.-.. |. +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 256677788888877 78999999999887433 32 6788888888877 789999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-C-----CchhHHHHHHHHHhcCC
Q 003273 659 ELESEKDGSYTLLSNIYANA-G-----RWKDVARIRSLMKHTGV 696 (834)
Q Consensus 659 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 696 (834)
++ |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66788999999999764 3 89999999999887763
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=107.41 Aligned_cols=150 Identities=17% Similarity=0.065 Sum_probs=116.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 003273 541 HGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 618 (834)
.|++++|+..|++..+ ..|+ ...+..+...+...|++++|.+.|++..+ +.| +...+..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4788999999999988 5676 77889999999999999999999999874 455 477899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCchhHHHHHHHHHh
Q 003273 619 VELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA---GRWKDVARIRSLMKH 693 (834)
Q Consensus 619 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 693 (834)
.+.+++. ...| +...|..+...+...|+.++|...++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999887 2233 5778999999999999999999999999999999999999999999999 999999999988876
Q ss_pred cC
Q 003273 694 TG 695 (834)
Q Consensus 694 ~~ 695 (834)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=88.09 Aligned_cols=242 Identities=11% Similarity=0.012 Sum_probs=159.1
Q ss_pred HHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHH
Q 003273 401 YAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFG 480 (834)
Q Consensus 401 y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 480 (834)
..-.|.+..+..-...+....++ ..-.-+..+|...|++... ..-.|....+ .++..+...+ +
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~-~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~-~~la~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDN-TLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVL-DLYVQFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCH-HHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHH-HHHHHHHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcCccchH-HHHHHHHHHHHHcCCCccC-----------CCCCHHHHHH-HHHHHHhccc----H
Confidence 34467777777755555432232 2222344677777776531 1112221111 2222222222 4
Q ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003273 481 RQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RNVVSWTSLMTGYGMHGLGDKAHWAFDQMR 555 (834)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 555 (834)
...++..+..+. .+......+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 86 ~~~l~~l~~~~~--~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 86 IEELENLLKDKQ--NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CHHHHHTTTTSC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554442 4445556888999999999999999998743 245577778889999999999999999998
Q ss_pred HcCCCC-----ChhHHHHHHHH--HHh--cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 556 KEGLAP-----DGVTFLVLLYA--CSH--SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 556 ~~g~~p-----~~~t~~~ll~a--~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
+ ..| +..+...|..+ ... .+++++|..+|+++.++ .|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 677 35666666666 333 34899999999998743 3553333444458999999999999987642
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 627 M-----------EP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 627 ~-----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
. .| |+.+.-.++......|+ .|.+.++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 13 45666666666666777 78999999999999987553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=82.62 Aligned_cols=114 Identities=9% Similarity=0.032 Sum_probs=73.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 003273 559 LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWV 635 (834)
Q Consensus 559 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 635 (834)
+.|+ ...+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. ... .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4454 445555666666666666666666665532 1223555666666666666666666666654 222 3456777
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
.+..++...|++++|+..++++++++|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777778888888888888888888888887777766654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-07 Score=88.71 Aligned_cols=181 Identities=13% Similarity=0.042 Sum_probs=122.3
Q ss_pred HHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHh
Q 003273 430 MIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSR 509 (834)
Q Consensus 430 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k 509 (834)
....+...|++++|+..|++.++ ..|+......... . ..... ..+.+.+.+...|.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~-~-----------------~~~~~-~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTN-V-----------------DKNSE-ISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHH-S-----------------CTTSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhh-h-----------------cchhh-hhHHHHHHHHHHHHH
Confidence 34456677888888888887766 4454322110000 0 00001 223344558889999
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC--HHHHH
Q 003273 510 SGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM--VDQGL 583 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 583 (834)
.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999887 34678899999999999999999999999999 6786 7778888888766654 34455
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 003273 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPTPIIWVALL 638 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 638 (834)
..++... ...|....+..+...+...|++++|...|++. ...|+......|.
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555442 23333334445666777889999999999987 5668865554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=81.31 Aligned_cols=101 Identities=9% Similarity=0.015 Sum_probs=90.3
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 594 GISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 594 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
-+.|+ .+.+...+..|.+.|++++|++.|++. ... .+...|..+..++...|+.+.|+..++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35565 456788899999999999999999987 333 457899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhc
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.+|...|++++|.+.+++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.7e-07 Score=84.15 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=62.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTG-YGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...|.+.|++++|...|++.. .|+...+..+... +...+...+|+..|++.++ ..|+ ...+..+.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la 115 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELA 115 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 334445555666666666666666666655 2322222211111 1121222235566666655 3454 45555556
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISAR---AEHYACIVDLLGRANRLDEAVELIE 623 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (834)
.++...|++++|...|+.+.+ ..|+ ...+..+..+|...|+.++|...|+
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 666666666666666665542 2332 3345555555555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=84.69 Aligned_cols=102 Identities=8% Similarity=-0.068 Sum_probs=86.7
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 594 GISAR-AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 594 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
.+.|+ ...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44453 456777777888888888888888876 2234 57899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.62 E-value=9e-07 Score=86.63 Aligned_cols=182 Identities=13% Similarity=-0.029 Sum_probs=130.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-ccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChh----HHHHHHH
Q 003273 464 LSCALMACARLAALRFGRQIHAYVLRNQYE-MLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVV----SWTSLMT 536 (834)
Q Consensus 464 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~----~~~~li~ 536 (834)
+......+...|+++.|...+..+++.... +.....+..+...|.+.|++++|...|++.. .|+.. .|..+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 444556788899999999999999986543 1234677888999999999999999999986 34322 4555555
Q ss_pred HHHH------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 003273 537 GYGM------------------HGLGDKAHWAFDQMRKEGLAPDGV-TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA 597 (834)
Q Consensus 537 ~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 597 (834)
++.. .|+.++|+..|+++++ ..|+.. ........ ..+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----------~~~~~~~~------- 147 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----------VFLKDRLA------- 147 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----------HHHHHHHH-------
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----------HHHHHHHH-------
Confidence 5554 5789999999999998 567743 32221110 00111111
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDG 666 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 666 (834)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++...|+.+.|+..++++....|++..
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678899999999999999887 22243 246888888999999999999999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.4e-07 Score=92.50 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=151.3
Q ss_pred cCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHH
Q 003273 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTA 516 (834)
Q Consensus 437 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 516 (834)
.|++++|.+++++..+. .+.. + +...++++.+...+ +.....|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~----~~~~--~------~~~~~~~~~A~~~~----------------~~a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKY----LKTS--F------MKWKPDYDSAASEY----------------AKAAVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHH----HCCC--S------SSCSCCHHHHHHHH----------------HHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHH----cccc--c------cCCCCCHHHHHHHH----------------HHHHHHHHHcCCHHHH
Confidence 46777888888877651 1111 0 00024455444444 4445678888999999
Q ss_pred HHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHHhcCCHHHH
Q 003273 517 RVVFDNLKQ-----RN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL---APD--GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 517 ~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a 582 (834)
...|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 888887651 12 34788888999999999999999998876311 122 4567888888988 999999
Q ss_pred HHHHHHhHHhcCCC---C-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCcHHHH
Q 003273 583 LKYFDSMSKEFGIS---A-RAEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----PIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 583 ~~~~~~m~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a 650 (834)
+.+|++..+-+.-. + ....+..+..+|.+.|++++|++.+++.- ..++ ...|..+...+...|+.+.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876432111 1 14678889999999999999999998762 1122 22566666677788999999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCchhHHH
Q 003273 651 ELAANRLLELESEKDGS-----YTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 686 (834)
...+++++ +.|+.... ...++.+| ..|+.+.+.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 99975533 34455555 5676665555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.9e-07 Score=90.31 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=85.7
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSL-MTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...|.+.|++++|...|+++. .|+...+... ...+.+.++.++|+..|++..+ ..|+ ...+..+.
T Consensus 149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la 226 (287)
T 3qou_A 149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLA 226 (287)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHH
Confidence 445566677777778888888888888776 3444332222 2235566777778888888877 4565 66777777
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEG 624 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 624 (834)
.++...|++++|...|..+.+...-..+...+..++.+|...|+.++|...+++
T Consensus 227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 788888888888888887775421122255677777777777777777666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=85.17 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=85.1
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 594 GISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 594 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
.+.| +...+..+...+.+.|++++|+..|++. ... .+...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3444 3556667788888888888888888876 223 467789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhc
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.+|...|++++|...++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.59 E-value=5.2e-06 Score=91.28 Aligned_cols=359 Identities=9% Similarity=0.003 Sum_probs=183.8
Q ss_pred CCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCC-CchHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHh----CCCh
Q 003273 114 RLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP-SSRCGSSVHAVICSS-GFD-SNVFVCNALMAMYAR----CDTL 186 (834)
Q Consensus 114 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~~~~----~g~~ 186 (834)
++++.+..+|++.... .|+...|..-++-..+.+ ..+....+|+.++.. |.. .+..+|...+..+.. .|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6677777777776652 356555555554443333 223455666666554 432 345666666665432 3456
Q ss_pred hHHHHHHHhcCCCCCCCc-chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcH
Q 003273 187 SYARQLFDEMFQPGICDI-VSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMM 265 (834)
Q Consensus 187 ~~A~~~~~~m~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~ 265 (834)
+.++++|++.......+. ..|......- .......+..+..+. ...+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~-------------------------------~~~y 153 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDT-------------------------------LPIF 153 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH-------------------------------HHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHH-------------------------------hHHH
Confidence 667777776655311111 1122221111 111111222222111 1122
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHcCC--C-----HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHH
Q 003273 266 EEAKKVFERMK----VKDVVSWNAMVTGYSRIG--S-----FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEA 334 (834)
Q Consensus 266 ~~A~~~~~~~~----~~d~~~~~~li~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 334 (834)
..|+.+++... ..+...|...+..-...+ - .+.+..+|+++....+. +...|-..+.-+.+.|+.++|
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 33333333222 124456776666543321 1 34577899998876544 677888888888999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcC---CCC---CChhhHHHHHHHHHHhCCChH
Q 003273 335 LDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVD---GSH---PDDLMVINALIDMYAKCKSVD 408 (834)
Q Consensus 335 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~---~~~~~~~~~li~~y~~~g~~~ 408 (834)
.++|++.... |....+... ++..... .+++..+........ ++. .....+|...+..+.+.+.++
T Consensus 233 r~i~erAi~~---P~~~~l~~~---y~~~~e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 233 KKVVERGIEM---SDGMFLSLY---YGLVMDE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HHHHHHHHHH---CCSSHHHHH---HHHHTTC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhC---CCcHHHHHH---HHhhcch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 9999999987 555443222 2211111 122333222210000 000 001123333334433344444
Q ss_pred HHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhh-hHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLA-ALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~ 487 (834)
.|+.+|+... .|. .++ ..|......-...+ +.+.|+.++...
T Consensus 304 ~AR~i~~~A~--~~~-~~~----------------------------------~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 304 LFRKLFIELG--NEG-VGP----------------------------------HVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HHHHHHHHHT--TSC-CCH----------------------------------HHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHhh--CCC-CCh----------------------------------HHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4444444441 111 011 11111000001112 456666666666
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.+... .++..+...++...+.|+.+.|+.+|+++. .....|...+.--..+|+.+.+..+++++..
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55432 345556667788888999999999999984 3567788888777788888888888888765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.9e-06 Score=86.15 Aligned_cols=214 Identities=12% Similarity=0.130 Sum_probs=114.9
Q ss_pred cCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC--CHH
Q 003273 437 NGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG--DID 514 (834)
Q Consensus 437 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~ 514 (834)
....++|+.++..++. +.|+..|. ++.-...+...| +++
T Consensus 46 ~e~s~~aL~~t~~~L~----~nP~~~ta-----------------------------------Wn~R~~~L~~l~~~~~~ 86 (306)
T 3dra_A 46 EEYSERALHITELGIN----ELASHYTI-----------------------------------WIYRFNILKNLPNRNLY 86 (306)
T ss_dssp TCCSHHHHHHHHHHHH----HCTTCHHH-----------------------------------HHHHHHHHHTCTTSCHH
T ss_pred CCCCHHHHHHHHHHHH----HCcHHHHH-----------------------------------HHHHHHHHHHcccccHH
Confidence 3444688888888877 67766553 222233333334 555
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHH--H
Q 003273 515 TARVVFDNLK---QRNVVSWTSLMTGY----GMH---GLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVD--Q 581 (834)
Q Consensus 515 ~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~ 581 (834)
++++.++.+. ..+...|+.-...+ ... +++++++.+++++.+ ..| |...|..-...+.+.|.++ +
T Consensus 87 eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~ 164 (306)
T 3dra_A 87 DELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAK 164 (306)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHH
Confidence 5555555544 22344454443333 333 455666666666665 334 3445555555555555555 5
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Q 003273 582 GLKYFDSMSKEFGISARAEHYACIVDLLGRANR------LDEAVELIEGM-PM-EPTPIIWVALLNGCRIHAN-VELGEL 652 (834)
Q Consensus 582 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~-~~~a~~ 652 (834)
++++++.+.+. -.-+...|+.-..++.+.|. +++++++++++ .. .-|...|+-+...+...|+ .+....
T Consensus 165 EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 165 ELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 66666655532 12233444444444444444 56666666554 11 2345666666666655554 233444
Q ss_pred HHHHHHhcC---CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 653 AANRLLELE---SEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 653 ~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.++++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 555555554 55666666777777777777777777766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=96.82 Aligned_cols=192 Identities=10% Similarity=-0.054 Sum_probs=138.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.+...+..+...|.+.|++++|...|++.. .| +...|..+...|...|++++|+..+++.++ +.|+ ...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 455667778888999999999999999876 34 778899999999999999999999999988 6776 67788888
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARA-EHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 649 (834)
.++...|++++|...|+...+. .|+. ..+...+....+.....+... .......++..+...+ ..+. .|+.+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHH
Confidence 9999999999999999987642 2321 011111222222211111111 2222333444444333 3333 688999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHhc
Q 003273 650 GELAANRLLELESEKDGSYTLLSNIYANA-GRWKDVARIRSLMKHT 694 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 694 (834)
|.+.++++++++|++......+..++... +++++|.++|..+.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998887878888888777 7899999999988653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-06 Score=83.10 Aligned_cols=144 Identities=9% Similarity=-0.051 Sum_probs=103.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM 578 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 578 (834)
+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 455677788889999999999888888888888888888889999999999988888 3454 6678888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 579 VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT-PIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 579 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
+++|...|+...+...-.+... +...| +...|+ ...|..+...+...|+.+.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887764211111000 00000 011222 356777777788888888888888888
Q ss_pred HhcCCCC
Q 003273 658 LELESEK 664 (834)
Q Consensus 658 ~~~~p~~ 664 (834)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8888865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=84.64 Aligned_cols=125 Identities=10% Similarity=0.005 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRI 643 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 643 (834)
+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|++.+++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 444555566677777777776644 2456667777777777777777777777665 12 2356788888888999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 644 HANVELGELAANRLLELESEKD----------------GSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
.|+.+.|+..+++++++.|++. .++..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 899999999999999999999999987653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.8e-06 Score=83.02 Aligned_cols=231 Identities=8% Similarity=0.033 Sum_probs=172.8
Q ss_pred HHHhCCChHHHHHHHHhcCCCCCC-ccchHHHHHHHHhcC--ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhh
Q 003273 400 MYAKCKSVDVARVMFDAIAPKNRD-VATWTVMIGSYSQNG--GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAA 476 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~ 476 (834)
...+....++|...++.+...+|+ ...||.--..+...| ++++++++++.++. ..|...+.
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~y~a------------ 105 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKNYQI------------ 105 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTCCHH------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCcccHHH------------
Confidence 334444557899999998866774 567998888888888 99999999999987 56655432
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHH----Hhc---CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChH-
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMY----SRS---GDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGD- 545 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~- 545 (834)
++.-...+ .+. ++++++..+++.+. .+|..+|+.-.-.+.+.|.++
T Consensus 106 -----------------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 106 -----------------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred -----------------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 11111111 223 67888888888887 457788888888888888888
Q ss_pred -HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 546 -KAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM------VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 546 -~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
++++.++++++. .| |...|+.-.....+.+. +++++++++.++.. -+-+...|+.+..++.+.|+..+
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChH
Confidence 999999999984 55 46667766666777676 89999999988752 33467788888888988887544
Q ss_pred -HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCCCCchHHHHHH
Q 003273 618 -AVELIEGMP-M----EPTPIIWVALLNGCRIHANVELGELAANRLLE-LESEKDGSYTLLSN 673 (834)
Q Consensus 618 -A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 673 (834)
+.++.++.- . ..+...+..+...+.+.|+.++|.++++.+.+ .+|-....+...++
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 556777652 1 24677889999999999999999999999997 79987766665544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.54 E-value=7.6e-05 Score=82.00 Aligned_cols=214 Identities=10% Similarity=0.018 Sum_probs=125.1
Q ss_pred HHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHH
Q 003273 409 VARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYV 487 (834)
Q Consensus 409 ~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 487 (834)
.+..+|+++....| +...|-..+.-+.+.|+.++|..+|++.+. . |....+.. +++.....+ +++..+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~--~---P~~~~l~~---~y~~~~e~~---~~~~~l 265 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE--M---SDGMFLSL---YYGLVMDEE---AVYGDL 265 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H---CCSSHHHH---HHHHHTTCT---HHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--C---CCcHHHHH---HHHhhcchh---HHHHHH
Confidence 34566666553333 456677777777788888888888888887 3 65543221 111111000 011111
Q ss_pred HHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003273 488 LRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFL 567 (834)
Q Consensus 488 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 567 (834)
. ..+.... .+.+... ........|-..+..+.+.+..+.|..+|++. +. ..++...|.
T Consensus 266 ~----------------~~~~~~~-~~~~~~~---~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 266 K----------------RKYSMGE-AESAEKV---FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp H----------------HHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred H----------------HHHHhhc-cchhhhh---cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 1 1110000 0000000 00011245767777776778889999999988 32 112333343
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 003273 568 VLLYA-CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646 (834)
Q Consensus 568 ~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 646 (834)
..... +...++.+.|..+|+...+.++- ++..+...++...+.|+.+.|..+|+++. .....|...+.--..+|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 22221 12234689999999988876433 34456677888888999999999999984 356788888887778888
Q ss_pred HHHHHHHHHHHHh
Q 003273 647 VELGELAANRLLE 659 (834)
Q Consensus 647 ~~~a~~~~~~~~~ 659 (834)
.+.+..++++..+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-06 Score=79.02 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
...+..+...+.+.|++++|.+.|++. ... .+...|..+..++...|+++.|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556677778888888888888776 223 367788889889999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-07 Score=91.86 Aligned_cols=197 Identities=9% Similarity=-0.026 Sum_probs=150.8
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFD 552 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 552 (834)
..|++++|.+++....+.... . .+...+++++|...|... ...|...|++++|+..|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 357888888888887764321 0 111157888888887654 567888999999999999
Q ss_pred HHHHcC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003273 553 QMRKEG----LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI--SA--RAEHYACIVDLLGRANRLDEAVELIE 623 (834)
Q Consensus 553 ~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 623 (834)
+..+.. -.+. ..+|..+...|...|++++|+..|++..+-+.- .| ....+..+..+|.+ |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 987631 1111 457888899999999999999999987643211 12 24678889999999 99999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchhHHHHHH
Q 003273 624 GMP----MEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKD------GSYTLLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 624 ~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 689 (834)
+.- ...+ ..++..+...+...|+++.|+..+++++++.|++. ..+..++.+|...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 761 1111 45788888999999999999999999999877654 267778888999999999999999
Q ss_pred HHH
Q 003273 690 LMK 692 (834)
Q Consensus 690 ~m~ 692 (834)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 886
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-06 Score=74.13 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP--MEPTPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++. .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34444555555555555555555555432 12234455555556666666666666655541 123566788888888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAG 679 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 679 (834)
...|+.+.|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-06 Score=75.08 Aligned_cols=117 Identities=8% Similarity=-0.049 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555555556666666666555432 1223455555666666666666666666554 112 3466788888888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 682 (834)
...|+.+.|...+++++++.|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-06 Score=84.07 Aligned_cols=216 Identities=10% Similarity=-0.010 Sum_probs=117.2
Q ss_pred hCCChHHHHHHHHhcCCCCC-CccchHHH-------HHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHH-HHHHhh
Q 003273 403 KCKSVDVARVMFDAIAPKNR-DVATWTVM-------IGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCA-LMACAR 473 (834)
Q Consensus 403 ~~g~~~~A~~~f~~~~~~~~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l-l~a~~~ 473 (834)
..++.+.|.+.|.++....| ....|+.+ ...+.+.++..+++..+..-.. +.|+......- ...|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~----l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ----ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT----CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc----CChhhhhhhhccCCcccc
Confidence 57999999999999886666 46788888 4666666777777777766644 56654321100 000000
Q ss_pred hhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHH
Q 003273 474 LAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAF 551 (834)
Q Consensus 474 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 551 (834)
+...+. .-..+.-.+..++...|++++|.++|+.+. .|+......+...+.+.|++++|+..|
T Consensus 94 --------------~~~~v~-~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 94 --------------ITYPVT-SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp --------------CEEECS-SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------cccccC-CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000000 112334455666777777777777777776 232224444444555666666666666
Q ss_pred HHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 552 DQMRKEGLAPD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS-ARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 552 ~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
++... .|+ ...+..+..++...|++++|+..|++... +-. |..
T Consensus 159 ~~a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~--g~~~P~~--------------------------- 206 (282)
T 4f3v_A 159 KSAGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND--SPAGEAC--------------------------- 206 (282)
T ss_dssp TTGGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--STTTTTT---------------------------
T ss_pred HHhhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--CCCCccc---------------------------
Confidence 53332 121 12344455555555555555555554432 111 210
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 627 MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 627 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
....+..+..++...|+.++|...++++.+.+|+ +.+...|.+
T Consensus 207 ---~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 207 ---ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 1224445555566666666666666666666665 555444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-06 Score=84.54 Aligned_cols=163 Identities=6% Similarity=-0.097 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCC--hHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-G----VTFLVLLYACSHSGMVDQGLKYFDSMSKEFG--ISAR--AEH 601 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~~ 601 (834)
+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++...+... ..+. ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33345556666777777777766665321111 0 1233344455666777777777776653211 1111 346
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------CCc
Q 003273 602 YACIVDLLGRANRLDEAVELIEGMP----MEPT-----PIIWVALLNGCRIHANVELGELAANRLLELESE------KDG 666 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 666 (834)
|+.+...|...|++++|.+.++++. ..|+ ..++..+...|...|++++|...+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777777777787777777776541 1122 257888888899999999999999998887532 146
Q ss_pred hHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 003273 667 SYTLLSNIYANAGRWKDV-ARIRSLMKH 693 (834)
Q Consensus 667 ~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 693 (834)
+|..++.+|...|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999999999999999 776776653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-06 Score=78.62 Aligned_cols=126 Identities=4% Similarity=-0.067 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRI 643 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 643 (834)
+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444444555555555555544421 1123444555555555555555555555544 11 2346678888888888
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhcCCchhHHHHHHHHHh
Q 003273 644 HANVELGELAANRLLELESEKDGSYTLLSN--IYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 693 (834)
.|+.+.|...+++++++.|++...+..+.. .+...|++++|...+.....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999999988877744444 47888999999988876653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=78.12 Aligned_cols=161 Identities=12% Similarity=-0.067 Sum_probs=130.3
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK-QRNVVSWTSLMTGYGMHG----LGDKAHWAFDQMRKEGLAPDGVTFLVL 569 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~l 569 (834)
.++..+..|..+|...+++++|...|++.. ..+...+..|...|.. | +.++|+..|++..+.| +...+..|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 456777888889999999999999999887 4567788888888877 6 8999999999998753 56777788
Q ss_pred HHHHHh----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 003273 570 LYACSH----SGMVDQGLKYFDSMSKEFGISAR---AEHYACIVDLLGR----ANRLDEAVELIEGMP-MEPTPIIWVAL 637 (834)
Q Consensus 570 l~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~~~~~~~l 637 (834)
...|.. .+++++|..+|+...+ ..|. +..+..|..+|.. .+++++|+++|++.. ..++...+..|
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L 168 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA 168 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 888877 8899999999998863 3443 6788889999988 889999999999873 22566677777
Q ss_pred HHHHHhc-C-----cHHHHHHHHHHHHhcCC
Q 003273 638 LNGCRIH-A-----NVELGELAANRLLELES 662 (834)
Q Consensus 638 l~~~~~~-g-----~~~~a~~~~~~~~~~~p 662 (834)
...|... | |.++|...++++.+..+
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777543 3 89999999999998865
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=75.38 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNG 640 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 640 (834)
..+..+...+...|++++|..+|+...+ ..| +...+..+..+|...|++++|++.+++. .. +.+...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344444455555555555555554442 122 3444555555555555555555555544 11 2346678888888
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
+...|+.+.|...++++++++|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999888899999988887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.7e-06 Score=84.10 Aligned_cols=159 Identities=6% Similarity=-0.072 Sum_probs=112.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC-CCChh----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 003273 535 MTGYGMHGLGDKAHWAFDQMRKEGL-APDGV----TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR----AEHYACI 605 (834)
Q Consensus 535 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 605 (834)
+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..|+.+.+...-.++ ...++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566777888888888888776321 12211 2234555666677888888888877652111222 3357788
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC------CchHHH
Q 003273 606 VDLLGRANRLDEAVELIEGMP-------ME-PT-PIIWVALLNGCRIHANVELGELAANRLLELESEK------DGSYTL 670 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 670 (834)
...|...|++++|.+.++++- .. +. ..++..+...|...|++++|...+++++++.++. +.+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888888888888888777652 11 11 3378888889999999999999999999875443 568999
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHh
Q 003273 671 LSNIYANAGR-WKDVARIRSLMKH 693 (834)
Q Consensus 671 l~~~~~~~g~-~~~a~~~~~~m~~ 693 (834)
++.+|...|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999995 5999999887754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=9.7e-07 Score=92.27 Aligned_cols=144 Identities=12% Similarity=0.007 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIV 606 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 606 (834)
+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++.+.-. -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 344666666667777777777777777766 34432100 0011110000 0135677777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhH
Q 003273 607 DLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 684 (834)
.+|.+.|++++|++.+++. ... .+...|..+..++...|+++.|+..++++++++|++..++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887776 222 35778999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHH
Q 003273 685 -ARIRSLMK 692 (834)
Q Consensus 685 -~~~~~~m~ 692 (834)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=75.45 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
..+..+...+.+.|++++|++.|++. ... .+...|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566677777778888887777765 222 3577888888888999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhc
Q 003273 678 AGRWKDVARIRSLMKHT 694 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~~ 694 (834)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=86.30 Aligned_cols=181 Identities=8% Similarity=-0.013 Sum_probs=139.6
Q ss_pred hcCCHHHHHHHHhhcC--CC-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCh---------------
Q 003273 509 RSGDIDTARVVFDNLK--QR-NVVSWTSL-------MTGYGMHGLGDKAHWAFDQMRKEGLAPDG--------------- 563 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~--~~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 563 (834)
..++...|.+.|.++. .| ....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5789999999999887 34 45689888 4566666666667666666554 44432
Q ss_pred -------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 003273 564 -------VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTP----I 632 (834)
Q Consensus 564 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 632 (834)
.....+..++...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123456678899999999999988763 3465446667777999999999999999877533433 3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELE--SE-KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+..+..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67888888999999999999999998643 54 4457889999999999999999999999874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=79.13 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=74.3
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 003273 559 LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWV 635 (834)
Q Consensus 559 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 635 (834)
+.|+ ...+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.|++. ... .+...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 4453 444555666666677777777777666532 1224556666667777777777777777665 222 3466788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 636 ALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 636 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
.+..++...|+.++|+..+++++++.|+++.....
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 88888889999999999999999999887765433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=84.12 Aligned_cols=173 Identities=4% Similarity=-0.097 Sum_probs=102.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG 577 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 577 (834)
+..+......|++++|.+.++.... .....|..+...+...|++++|+..|++.++ ..|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 4445555566777777776664432 2344677777788888888888888888887 34432111000
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003273 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAAN 655 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~ 655 (834)
..+.-. .. .....+..+..+|.+.|++++|++.+++. ... .+...|..+..++...|+++.|...++
T Consensus 78 ~~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 00 01245666677777777777777777665 222 356788888888999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCchhHH-HHHHHHHhc
Q 003273 656 RLLELESEKDGSYTLLSNIYANAGRWKDVA-RIRSLMKHT 694 (834)
Q Consensus 656 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 694 (834)
++++++|++..++..++.++...|+.+++. ..++.|...
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888776 455555433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=79.45 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=68.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCcH--HHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNG-CRIHANV--ELG 650 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~-~~~~g~~--~~a 650 (834)
.|++++|...++...+. -+.+...+..+..+|...|++++|.+.+++. .. +.+...|..+... +...|+. +.|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444321 1123344444555555555555555555443 11 1245566666666 5566776 777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 651 ELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...++++++.+|+++.++..++.+|...|++++|...++.+.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777777777777888888888888888777777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-05 Score=81.48 Aligned_cols=162 Identities=9% Similarity=-0.064 Sum_probs=118.8
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--hh
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLKQ--R-NV------VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA---PD--GV 564 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~ 564 (834)
.+...+..|...|++++|.+.+....+ + .. ..+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334567778889999999998876541 1 11 22344556677788999999999998863221 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-C------CCC-H
Q 003273 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-----AEHYACIVDLLGRANRLDEAVELIEGMP-M------EPT-P 631 (834)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~p~-~ 631 (834)
+++.+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|.+.+++.- . ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732222222 2578899999999999999999988751 1 111 5
Q ss_pred HHHHHHHHHHHhcCcHHHH-HHHHHHHHhc
Q 003273 632 IIWVALLNGCRIHANVELG-ELAANRLLEL 660 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 660 (834)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778887765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=88.44 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=58.9
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 003273 505 DMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 580 (834)
..|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..+++.++ +.|+ ..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666666554 22355566666666666666666666666665 3443 455555555666666666
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHH--HhhcCCHHHHHHHHH
Q 003273 581 QGLKYFDSMSKEFGISARAEHYACIVDL--LGRANRLDEAVELIE 623 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 623 (834)
+|.+.|++..+...- +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655532111 12223333333 445555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-06 Score=73.75 Aligned_cols=95 Identities=14% Similarity=-0.009 Sum_probs=63.2
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
.++..+..+...|.+.|++++|...|++.. . .+...|..+..+|...|++++|+..|++..+ +.|+ ...+..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 344455566666677777777777777665 2 3556677777777777777777777777776 4554 56666667
Q ss_pred HHHHhcCCHHHHHHHHHHhHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~ 591 (834)
.++...|++++|...|+...+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=5e-06 Score=77.65 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCH-
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL-LGRANRL- 615 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~g~~- 615 (834)
...|++++|+..+++..+ ..|+ ...+..+...+...|++++|..+|+.+.+.. +.+...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 345777788888888777 3454 6777778888888888888888888776431 2245667777777 7788887
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 616 -DEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 616 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
++|.+.++++ ...| +...|..+...+...|+.+.|...+++++++.|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888776 2233 467888888889999999999999999999999876544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=73.56 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDL 608 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 608 (834)
.|..+...+...|++++|+..|++..+ ..| +..++..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 344444445555555555555555554 233 2444455555555555555555555555432 12234445555555
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCcHHHHHHHHHHHHh
Q 003273 609 LGRANRLDEAVELIEGM-PMEP-TPIIWVA--LLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|.+.|++++|.+.+++. ...| +...|.. +...+...|+.++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 55555555555555544 1112 2333322 22224555666666666665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-06 Score=73.78 Aligned_cols=94 Identities=15% Similarity=-0.010 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667778888888888888776 2234 5778888888899999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhc
Q 003273 679 GRWKDVARIRSLMKHT 694 (834)
Q Consensus 679 g~~~~a~~~~~~m~~~ 694 (834)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999888654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=75.76 Aligned_cols=82 Identities=13% Similarity=0.030 Sum_probs=44.0
Q ss_pred hcCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHH
Q 003273 509 RSGDIDTARV---VFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKE----GLAPD-GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 509 k~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 580 (834)
..|++++|.+ .+..-+......|..+...+...|++++|+..+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322233455666666666667777777666665541 11221 344555555666666666
Q ss_pred HHHHHHHHhH
Q 003273 581 QGLKYFDSMS 590 (834)
Q Consensus 581 ~a~~~~~~m~ 590 (834)
+|..+++...
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-06 Score=76.20 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ... .++..|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 33444555566666666666666665532 1223455566666666666666666666655 112 3456777788888
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
...|+.+.|...+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 888889999999999999888877665544333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.1e-06 Score=72.27 Aligned_cols=97 Identities=10% Similarity=-0.021 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
+...+..+...+.+.|++++|...|++. ... .+...|..+...+...|+++.|...++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666666777777777777766655 122 34677888888888889999999999999999998888999999999
Q ss_pred HhcCCchhHHHHHHHHHhc
Q 003273 676 ANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~~ 694 (834)
...|++++|...++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988888764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-06 Score=90.92 Aligned_cols=115 Identities=4% Similarity=-0.049 Sum_probs=79.7
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVEL 649 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 649 (834)
+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+.++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44455555555555555432 22 2455556666666666666666666554 2233 46788889899999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchhHHHHHHH
Q 003273 650 GELAANRLLELESEKDGSYTLLSNI--YANAGRWKDVARIRSL 690 (834)
Q Consensus 650 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 690 (834)
|++.++++++++|++..++..++.+ +.+.|++++|.+.++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988 8899999999998874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.2e-05 Score=73.75 Aligned_cols=153 Identities=8% Similarity=-0.029 Sum_probs=115.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcC
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISA-RAEHYACIVDLLGRAN 613 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g 613 (834)
...|++++|.+.++.... ..+ ...++..+...+...|++++|..++++..+.. +..| ....+..+...|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457999999996655543 222 36778888899999999999999999876522 2222 2567888999999999
Q ss_pred CHHHHHHHHHhCC----CCC-C----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CC----chHHHHHHHHHhc
Q 003273 614 RLDEAVELIEGMP----MEP-T----PIIWVALLNGCRIHANVELGELAANRLLELESE--KD----GSYTLLSNIYANA 678 (834)
Q Consensus 614 ~~~~A~~~~~~~~----~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~ 678 (834)
++++|.+.+++.. ..+ + ...+..+...+...|+++.|...+++++++.+. ++ .++..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 9999999988751 122 2 346778888899999999999999999876432 22 2468899999999
Q ss_pred CCchhHHHHHHHHHh
Q 003273 679 GRWKDVARIRSLMKH 693 (834)
Q Consensus 679 g~~~~a~~~~~~m~~ 693 (834)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.4e-06 Score=76.33 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
..+..+...+.+.|++++|++.|++. ...| +...|..+...+...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555544 1122 455666666666666666666666666666666666666666666666
Q ss_pred cCCchhHHHHHHHHHhc
Q 003273 678 AGRWKDVARIRSLMKHT 694 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~~ 694 (834)
.|++++|...+++..+.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 66666666666666543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.3e-06 Score=69.72 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCchHHHHHHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESE--KDGSYTLLSNIY 675 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 675 (834)
..+..+...+.+.|++++|...+++. .. +.+...|..+...+...|+.++|...++++++..|+ +...+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34555666666667777776666654 11 235667888888888889999999999999999998 888899999999
Q ss_pred Hhc-CCchhHHHHHHHHHhcC
Q 003273 676 ANA-GRWKDVARIRSLMKHTG 695 (834)
Q Consensus 676 ~~~-g~~~~a~~~~~~m~~~~ 695 (834)
... |++++|.+.++...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 999 99999999988887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4.3e-05 Score=78.04 Aligned_cols=158 Identities=9% Similarity=-0.052 Sum_probs=116.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C---Ch---h-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHH
Q 003273 503 LIDMYSRSGDIDTARVVFDNLKQ--R---NV---V-SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-PD----GVTFLV 568 (834)
Q Consensus 503 li~~y~k~g~~~~A~~~~~~~~~--~---~~---~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 568 (834)
.+..+...|++++|...+++..+ + +. . .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999887653 1 11 1 2334666666778999999999999884322 22 226888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhc----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHH
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEF----GISAR-AEHYACIVDLLGRANRLDEAVELIEGMP-------MEPT-PIIWV 635 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 635 (834)
+..+|...|++++|..+|+.+.+.. +..+. ...|..+...|.+.|++++|.+.+++.- ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887422 12222 3478889999999999999999887651 1122 56888
Q ss_pred HHHHHHHhcC-cHHHHHHHHHHHHhc
Q 003273 636 ALLNGCRIHA-NVELGELAANRLLEL 660 (834)
Q Consensus 636 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 660 (834)
.+...+...| +.+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888899999 469999999998875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0001 Score=75.50 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-ChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhC-C-ChhHHHHHHH
Q 003273 152 RCGSSVHAVICSSGFDSNVFVCNALMAMYARCD-TLSYARQLFDEMFQPGICDIVSWNTIVAAYAQS-G-DAEGGLMLFA 228 (834)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~ 228 (834)
++|..+.+.++... +.+..+|+.--..+...| .+++++..++.+....+.+..+|+.-...+.+. + +++++++++.
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45566666666554 344555666666666666 477777777777776666777777776666655 5 6777777777
Q ss_pred HhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCH--------HHHH
Q 003273 229 RMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSF--------EDAF 300 (834)
Q Consensus 229 ~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~--------~~A~ 300 (834)
++.+. .| +|..+|+.-...+.+.|.+ ++++
T Consensus 150 k~L~~---dp---------------------------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 150 GSLLP---DP---------------------------------------KNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHTSS---CT---------------------------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHh---CC---------------------------------------CCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 77643 11 2333343333333333333 3888
Q ss_pred HHHHHhHhcCCCCCeeeHHHHHHHHHhcCC-------hhHHHHHHHHHHH
Q 003273 301 ALFKKMRQENVKLNVVTWSAVIAGYAQRGH-------GHEALDVFRQMQF 343 (834)
Q Consensus 301 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~ 343 (834)
+.++++.+..+. |..+|+-....+.+.++ ++++++.++++..
T Consensus 188 e~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 188 DWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 889999888777 88888888888777776 5677777777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.1e-06 Score=87.25 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=41.9
Q ss_pred ChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcc
Q 003273 389 DDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQ 452 (834)
Q Consensus 389 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 452 (834)
.+...+..+...|.+.|++++|...|++.....| +...|..+..+|...|++++|+..|++..+
T Consensus 36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 36 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666667777777777777776665444 445666666677777777777777766655
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.9e-05 Score=67.36 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHA 645 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 645 (834)
.+...+...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.+++. ... .+...|..+...+...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3333444444444444444444321 1112333444444444444444444444433 111 23556666666677777
Q ss_pred cHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 646 NVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
+.+.|...++++++..|+++..+..++.+
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777766666555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00024 Score=72.42 Aligned_cols=189 Identities=11% Similarity=-0.033 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-hHHHHHH
Q 003273 477 LRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSG--DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL-GDKAHWA 550 (834)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l 550 (834)
++.+..+...+..... .+..+++.-...+.+.| .++++..+++.+. ..|...|+.-.-.+...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~P--Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4555555555555433 45556655555556666 3677777777776 3466677776666667776 4777777
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc---
Q 003273 551 FDQMRKEGLAPD-GVTFLVLLYACSHS--------------GMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRA--- 612 (834)
Q Consensus 551 ~~~m~~~g~~p~-~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--- 612 (834)
++++++ ..|+ ...|+.....+.+. +.++++++++...... -+-|...|+-+--++.+.
T Consensus 168 ~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc
Confidence 777777 3453 55555554444433 3466667766666531 222344555444444444
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 613 --------NRLDEAVELIEGM-PMEPTPIIWVALLNGC-----RIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 613 --------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++++++|...+-|.-+.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 3456666666655 333443 343222211 1234555666666677777775555444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-05 Score=70.26 Aligned_cols=77 Identities=12% Similarity=-0.038 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
..+..+...|.+.|++++|++.+++. ... .+...|..+...+...|+.+.|...++++++++|++...+..+..+..
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 34444455555555555555555443 112 245677777777888888888888888888888887777766666543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-06 Score=71.59 Aligned_cols=93 Identities=5% Similarity=-0.032 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDG-------SYTLL 671 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 671 (834)
.+..++..+.+.|++++|++.|++. ...| +...|..+..++...|+++.|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777778888888888888766 2233 5778889999999999999999999999999887654 67788
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 003273 672 SNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 672 ~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999988765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=68.44 Aligned_cols=97 Identities=6% Similarity=0.068 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
....+..++..+...|++++|.+.+++. ... .+...|..+...+...|+.+.|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556778889999999999999999987 222 46778899999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhc
Q 003273 676 ANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~~ 694 (834)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-05 Score=68.81 Aligned_cols=108 Identities=10% Similarity=-0.026 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRI 643 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 643 (834)
+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444444444444444444321 1112344445555555555555555555444 1122 45677777777888
Q ss_pred cCcHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 003273 644 HANVELGELAANRLLELE------SEKDGSYTLLSNIY 675 (834)
Q Consensus 644 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 675 (834)
.|+.+.|...++++++++ |++......+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888 77666666665554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-05 Score=70.06 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003273 597 ARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNI 674 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 674 (834)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.++|...++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888999999999999999999987 3344 677899999999999999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHhc
Q 003273 675 YANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 675 ~~~~g~~~~a~~~~~~m~~~ 694 (834)
|...|++++|.+.++...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.5e-05 Score=71.79 Aligned_cols=108 Identities=11% Similarity=-0.025 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003273 564 VTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGC 641 (834)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 641 (834)
..+..+...+...|++++|+.+|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445555555555555555555555432 1123455555666666666666666666554 1223 467888888899
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSN 673 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 673 (834)
...|+++.|+..++++++++|++...+...+-
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999886655543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=73.42 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999888764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00034 Score=71.75 Aligned_cols=170 Identities=13% Similarity=0.061 Sum_probs=93.9
Q ss_pred HhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcC-ChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHH
Q 003273 402 AKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNG-GANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479 (834)
Q Consensus 402 ~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 479 (834)
.+.+..++|.++++.+...+| +...|+.--..+...| .++++++++..++. ..|
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nP-------------------- 120 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV----QNL-------------------- 120 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTC--------------------
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCC--------------------
Confidence 334445566666666654454 3445666555555555 36666666666655 333
Q ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHHhc-C-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--------H
Q 003273 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRS-G-DIDTARVVFDNLKQ---RNVVSWTSLMTGYGMHGLGD--------K 546 (834)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~ 546 (834)
.+..+++.-...+.+. + ++++++.+++.+.+ +|...|+--.-.+.+.|..+ +
T Consensus 121 ---------------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 121 ---------------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp ---------------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ---------------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 3333444434444444 4 66777777777763 35556665555555544444 7
Q ss_pred HHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 547 AHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM-------VDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 547 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
+++.++++++ ..| |...|+.....+.+.+. +++++++++.++.. -+-|...|+.+-.++.+.|+
T Consensus 186 ELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 186 ELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 7777777777 344 35556666666655554 56666666655531 22234455555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.8e-05 Score=65.51 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=39.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHh
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSH 575 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 575 (834)
+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..|+++.+. .| +..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 3444444444444444444444443 123334444444444444444444444444442 22 23344444444444
Q ss_pred cCCHHHHHHHHHHhH
Q 003273 576 SGMVDQGLKYFDSMS 590 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~ 590 (834)
.|++++|..+++.+.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=70.29 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|+..+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4566777777888888888888888776 44566 578888888899999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhc
Q 003273 673 NIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 673 ~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+|...|++++|...++...+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.3e-06 Score=72.47 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLEL-------ESEKDGSY----TLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..|..+..++...|++++|+..+++++++ +|++..+| ..++.+|...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 99988888 99999999999999999999888753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-06 Score=78.94 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM----PMEPT--------------PIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
..+..+...+.+.|++++|++.|++. +..|+ ...|..+..++...|+++.|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555666666777777777766654 11111 2688888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 662 SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 662 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|+++.++..++.+|...|++++|.+.++...+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.1e-05 Score=67.55 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
.|..+...+.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|++.++...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 455666666777777777777777766 4554 5556666667777777777777766655
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.1e-05 Score=66.63 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=44.9
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003273 498 FVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYAC 573 (834)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 573 (834)
..+..+...+...|++++|...|++.. ..+...|..+...+...|++++|+..+++..+. .|+ ...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 334444455555555555555555443 123444555555555555555555555555542 332 34444444455
Q ss_pred HhcCCHHHHHHHHHHhH
Q 003273 574 SHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~ 590 (834)
...|++++|..+|+...
T Consensus 91 ~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55555555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-05 Score=80.69 Aligned_cols=119 Identities=9% Similarity=-0.068 Sum_probs=85.6
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLK--QRN----------------VVSWTSLMTGYGMHGLGDKAHWAFDQMRK 556 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 556 (834)
.....+..+...|.+.|++++|...|++.. .|+ ...|..+..+|.+.|++++|+..|++.++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567778888999999999999998876 333 36777788888888888888888888887
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 003273 557 EGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 557 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 618 (834)
+.|+ ...+..+..++...|++++|+..|+.+.+. .| +...+..+..++.+.|+.++|
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4564 666777777788888888888888777642 33 344555555666666665555
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.5e-05 Score=68.06 Aligned_cols=99 Identities=7% Similarity=-0.104 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNG 640 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 640 (834)
...+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|...+++. ... .+...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 444445555555555555555555554432 1122444555555555555555555555544 112 245677777777
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCC
Q 003273 641 CRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+...|+.+.|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 77778888888888888887776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.4e-05 Score=83.38 Aligned_cols=144 Identities=11% Similarity=-0.002 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 44667777777777778888877777776 33432110 0 000000 000 01356777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 608 LLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
+|.+.|++++|++.++++ ... .+...|..+..++...|+++.|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 222 357789999999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 003273 686 R-IRSLMKH 693 (834)
Q Consensus 686 ~-~~~~m~~ 693 (834)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=71.90 Aligned_cols=111 Identities=12% Similarity=-0.010 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-------------GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGIS 596 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 596 (834)
.|......+.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..++..++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 455556666677777777777777777 4454 11444444445555555555554443331
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHH
Q 003273 597 ARAEHYACIVDLLGRANRLDEAVELIEG-MPMEPT-PIIW----VALLNGCRIHANVELGELAANRLLELESEKDGSYTL 670 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 670 (834)
+|++ .+..|+ ...| .....++...|++++|+..|+++++++|+|.+.+.-
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1111 133666 4588 999999999999999999999999999998776444
Q ss_pred H
Q 003273 671 L 671 (834)
Q Consensus 671 l 671 (834)
+
T Consensus 142 ~ 142 (159)
T 2hr2_A 142 K 142 (159)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-05 Score=68.45 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=59.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEPT-P---IIWVALLNGCRIHANVELGELAANRLLELESEK---DGSYTLLSNIYA 676 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 676 (834)
+...+.+.|++++|.+.+++. ...|+ . ..|..+...+...|+++.|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666554 11122 2 356666666777777777777777777777777 566777777777
Q ss_pred hcCCchhHHHHHHHHHhc
Q 003273 677 NAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 677 ~~g~~~~a~~~~~~m~~~ 694 (834)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888777777777653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.5e-05 Score=64.24 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 003273 566 FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP---TPIIWVALLNGC 641 (834)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 641 (834)
+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 333444444444444444444444321 1122334444455555555555555555443 1122 355666666666
Q ss_pred Hhc-CcHHHHHHHHHHHHhcCCCC
Q 003273 642 RIH-ANVELGELAANRLLELESEK 664 (834)
Q Consensus 642 ~~~-g~~~~a~~~~~~~~~~~p~~ 664 (834)
... |+.+.|.+.++++++..|.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 666 77777777777777776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00029 Score=78.63 Aligned_cols=169 Identities=5% Similarity=-0.086 Sum_probs=137.7
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 003273 511 GDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL----------GDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHS 576 (834)
Q Consensus 511 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 576 (834)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34567888888877 3356678887777777777 8999999999998 5675 77788888888888
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 003273 577 G--MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRAN-RLDEAVELIEGM-PMEP-TPIIWVALLNGCRIH------- 644 (834)
Q Consensus 577 g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 644 (834)
+ ++++++++++++.+. -+-+...|+.-..++.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999853 2335677888888888889 899999999988 3334 577898888876653
Q ss_pred -------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 645 -------ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 645 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
+.++++.+.+.++++++|+|..+|..+..++...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998666
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=5.2e-05 Score=65.99 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-------CchHHH
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEK-------DGSYTL 670 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 670 (834)
..+..+...+...|++++|...+++. . .+.+...|..+...+...|+++.|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44566667777777777777777665 1 22356778888888888999999999999999988776 778999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhc
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.+|...|++++|.+.++.+.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.9e-06 Score=70.61 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHH
Q 003273 612 ANRLDEAVELIEGM-PM---EPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVAR 686 (834)
Q Consensus 612 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 686 (834)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555554 22 132 44666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 003273 687 IRSLMKH 693 (834)
Q Consensus 687 ~~~~m~~ 693 (834)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=6.5e-05 Score=68.22 Aligned_cols=135 Identities=14% Similarity=0.045 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-PD----GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYAC 604 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 604 (834)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------- 80 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR---------- 80 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence 4555666666666666666666666542100 11 12344445555555555555555554432110
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHh
Q 003273 605 IVDLLGRANRLDEAVELIEGMPMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESE------KDGSYTLLSNIYAN 677 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~ 677 (834)
..+..+ ....+..+...+...|+.+.|...+++++++.+. ....+..++.+|..
T Consensus 81 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 81 -------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 000000 1234555566666677777777777766665221 13467788888888
Q ss_pred cCCchhHHHHHHHHHh
Q 003273 678 AGRWKDVARIRSLMKH 693 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~ 693 (834)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8888888888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.5e-05 Score=67.09 Aligned_cols=114 Identities=8% Similarity=-0.094 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++.+.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 34555666666666666666666666663 33 34555555666666666666666666554321 10
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 608 LLGRANRLDEAVELIEGMPMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
..++ ..+|..+...+...|+.+.|...++++++..| ++.....+..++.
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 44556666666667777777777777777766 4555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.001 Score=67.78 Aligned_cols=178 Identities=11% Similarity=0.017 Sum_probs=131.3
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-HHHHHHH
Q 003273 513 IDTARVVFDNLK---QRNVVSWTSLMTGYGMHGL--GDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGM-VDQGLKY 585 (834)
Q Consensus 513 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 585 (834)
++++...++.+. .++..+|+.-.-.+...|+ +++++.+++++.+ ..| |...|+.-...+...|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567778887776 4577899988888888884 8999999999999 456 57777777777788888 6999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc-----
Q 003273 586 FDSMSKEFGISARAEHYACIVDLLGRA--------------NRLDEAVELIEGM-PME-PTPIIWVALLNGCRIH----- 644 (834)
Q Consensus 586 ~~~m~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~----- 644 (834)
++.+++. -.-+...|+....++.+. +.++++++++++. ... -|...|+-+-+.+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999863 234566777766666655 5688999998877 223 4678887666665444
Q ss_pred ------CcHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCCchhHHHHHHHHHhc
Q 003273 645 ------ANVELGELAANRLLELESEKDGSYTLLSNIY---ANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 645 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 694 (834)
+-++.+++.++++++++|++.-.+..++... ...|..++....+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999998855544443322 2456677888888887764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=9.4e-05 Score=80.27 Aligned_cols=189 Identities=9% Similarity=-0.049 Sum_probs=127.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CC------------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCh
Q 003273 505 DMYSRSGDIDTARVVFDNLKQ--RN------------------VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEG-LAPDG 563 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~~--~~------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 563 (834)
..+.+.|++++|.+.|..+.+ ++ ..++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777776541 11 0136678888888899999988888876521 11222
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CC
Q 003273 564 ----VTFLVLLYACSHSGMVDQGLKYFDSMSKE---FGISA-RAEHYACIVDLLGRANRLDEAVELIEGMP-------ME 628 (834)
Q Consensus 564 ----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 628 (834)
...+.+...+...|.++++..+++..... .+..+ ....+..++..|...|++++|.+++++.. .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12233333445678888888888766532 12222 25577788899999999999998887651 11
Q ss_pred CC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC---C----CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PT-PIIWVALLNGCRIHANVELGELAANRLLELESE---K----DGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
+. ..++..++..|...|+++.|...+++++...|. + ...+..++.++...|++++|...+....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 347777888899999999999999988876432 1 24567778888889999999887766643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=8.1e-05 Score=64.19 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003273 569 LLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHA 645 (834)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 645 (834)
+...+...|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334444555555555555554421 22 3444455555555555555555555544 1223 4557777777777888
Q ss_pred cHHHHHHHHHHHHhcCCCCC
Q 003273 646 NVELGELAANRLLELESEKD 665 (834)
Q Consensus 646 ~~~~a~~~~~~~~~~~p~~~ 665 (834)
+.++|+..++++++++|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888887643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.4e-05 Score=83.13 Aligned_cols=123 Identities=7% Similarity=0.033 Sum_probs=85.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFG--ISA----RAEHYACIVDLLGRANRLDEAVELIEGM---------PMEPT-PIIWVA 636 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 636 (834)
+...|++++|..+++...+... +-| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655443211 111 1345666666666677777666666554 23354 347888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhc-----CCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 637 LLNGCRIHANVELGELAANRLLEL-----ESEKD---GSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
|...|..+|++++|+..+++++++ .|+.+ .....|..++.+.|++++|..++..+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998874 56655 455688889999999999999999998754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00016 Score=78.32 Aligned_cols=194 Identities=9% Similarity=-0.037 Sum_probs=127.2
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCcc------------------chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCC
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVA------------------TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPN 460 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~ 460 (834)
..+.+.|++++|.+.|..+....++.. ++..+...|...|++++|.+.+.++.. +.+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~----~~~~ 87 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE----YMMQ 87 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH----HHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHH
Confidence 456677899999999988764433211 255677788888888888888877754 1111
Q ss_pred cccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----C---C-ChhHH
Q 003273 461 AFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-----Q---R-NVVSW 531 (834)
Q Consensus 461 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~---~-~~~~~ 531 (834)
.. +.. ....+.+.+...+...|+.++|..++.... . + -..++
T Consensus 88 ~~-------------~~~----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 88 FA-------------KSK----------------TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp SC-------------HHH----------------HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred cc-------------chH----------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 00 000 011122333444455677777777766554 1 1 13467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hHH
Q 003273 532 TSLMTGYGMHGLGDKAHWAFDQMRKEG----LAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEF---GISAR--AEH 601 (834)
Q Consensus 532 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~ 601 (834)
..+...|...|++++|..++++....- -+|. ..++..++..|...|++++|..+++...... ..+|. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 778888999999999999998876531 1222 4567888889999999999999998775432 11111 356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~ 625 (834)
+..++..+...|++++|...|.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 778888889999999998877554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00018 Score=62.54 Aligned_cols=71 Identities=7% Similarity=-0.097 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHH
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM-PMEPT----PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLL 671 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 671 (834)
.+..+..+|.+.|++++|.+.+++. ...|+ ...+..+...+...|+.+.|...++++++..|+++......
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3334444444445555554444443 11122 34556666667777778888888888888777665544433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.80 E-value=8.8e-05 Score=78.25 Aligned_cols=136 Identities=8% Similarity=-0.022 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 003273 529 VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVD 607 (834)
Q Consensus 529 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 607 (834)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+ ... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHHH
Confidence 45666777777778888888877777661 11100 000011 110 1222 3567888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 608 LLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
+|.+.|++++|++.+++. ...| +...|..+..++...|+.++|+..++++++++|++..++..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988877 3444 46788899999999999999999999999999999999999999999888887775
Q ss_pred H
Q 003273 686 R 686 (834)
Q Consensus 686 ~ 686 (834)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.9e-05 Score=81.03 Aligned_cols=147 Identities=8% Similarity=-0.053 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
...|..+...+.+.|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677788888889999999999999888 5666442 233444444443221 136778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCchhH
Q 003273 608 LLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY-ANAGRWKDV 684 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 684 (834)
+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 2233 5778999999999999999999999999999999999999888884 445667778
Q ss_pred HHHHHHHHhc
Q 003273 685 ARIRSLMKHT 694 (834)
Q Consensus 685 ~~~~~~m~~~ 694 (834)
...++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00012 Score=66.43 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=73.6
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC---
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLKQ-----RNV----VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLA-PD--- 562 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~--- 562 (834)
...++..+...|...|++++|...|++..+ ++. .++..+...+...|++++|+..+++..+.... ++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 355778889999999999999999998762 221 47888889999999999999999998763111 11
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 563 -GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 563 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
...+..+...+...|++++|..+++...+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566777778888888888888876653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.78 E-value=7e-05 Score=68.53 Aligned_cols=77 Identities=13% Similarity=-0.022 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKD-GSYTLLSNIY 675 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 675 (834)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+++.|...++++++++|+++ .....|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777778888888888888887766 2233 567888899999999999999999999999999887 4455554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.5e-05 Score=65.39 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003273 576 SGMVDQGLKYFDSMSKEFGI-SA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
.|++++|+..|++..+. +. .| +...+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+.++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555421 10 12 2344555556666666666666666554 1123 4567777777788888888888
Q ss_pred HHHHHHHhcCCCCCchHH
Q 003273 652 LAANRLLELESEKDGSYT 669 (834)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~ 669 (834)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888887765443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.5e-05 Score=63.32 Aligned_cols=92 Identities=11% Similarity=-0.053 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC------CchHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEK------DGSYT 669 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 669 (834)
+...+..+...+.+.|++++|++.+++. ... .+...|..+..++...|+++.|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456677777888888888888888776 222 357788889999999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCchhHHHHHH
Q 003273 670 LLSNIYANAGRWKDVARIRS 689 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~ 689 (834)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88999988888887765443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.8e-05 Score=77.73 Aligned_cols=151 Identities=9% Similarity=-0.033 Sum_probs=78.6
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003273 496 IPFVANCLIDMYSRSGDIDTARVVFDNLK--QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYAC 573 (834)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 573 (834)
....+..+...|.+.|++++|...|++.. .|+... +...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45567788889999999999999999876 333221 222333334332221 13677777888
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCcHHHH
Q 003273 574 SHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNG-CRIHANVELG 650 (834)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a 650 (834)
.+.|++++|+..++...+. -+.+...|..+..+|...|++++|++.|++. ...|+ ...+..|... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887642 1235677888888888888999998888887 34454 3455555544 3445667788
Q ss_pred HHHHHHHHhcCCCCC
Q 003273 651 ELAANRLLELESEKD 665 (834)
Q Consensus 651 ~~~~~~~~~~~p~~~ 665 (834)
...++++++..|+++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 889999999988764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00032 Score=76.44 Aligned_cols=64 Identities=6% Similarity=-0.055 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999998764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=59.61 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+...|..+...+...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357789999999999999999999999999999999999999999999999999999999988754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=57.71 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
...+..+...+.+.|++++|++.+++. ... .+...|..+...+...|+.+.|...++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666667777777777777777665 122 356678888888999999999999999999999999999999998887
Q ss_pred hcC
Q 003273 677 NAG 679 (834)
Q Consensus 677 ~~g 679 (834)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=75.04 Aligned_cols=113 Identities=5% Similarity=-0.032 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEP-TPIIWVALLNGC 641 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 641 (834)
...+..+...+...|++++|+..|++..+.. |.. ...-..+++.+ ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4456677777888888888888887766421 110 00011111111 122 356888899999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 642 RIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 642 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=5.9e-05 Score=67.11 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 611 RANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHAN----------VELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 611 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
|.+.+++|++.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555666555554 1222 45556656555555544 56999999999999999999999999999988
Q ss_pred C-----------CchhHHHHHHHHHhc
Q 003273 679 G-----------RWKDVARIRSLMKHT 694 (834)
Q Consensus 679 g-----------~~~~a~~~~~~m~~~ 694 (834)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999999875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00019 Score=61.08 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 618 AVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 618 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|++.+++. ...| +...|..+...+...|+++.|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445443 2233 57788888888999999999999999999999999999999999999999999999999888754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=79.07 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=88.4
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCCC---chHH
Q 003273 608 LLGRANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEKD---GSYT 669 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 669 (834)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 12344 358899999999999999999999999875 45544 5789
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 003273 670 LLSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIKA 740 (834)
Q Consensus 670 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~~ 740 (834)
.|+.+|..+|++++|..++++..+.-.+ . .| ..||...++..++.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------HG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------TC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------hC-CCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888653111 0 11 3799999988877776655543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00013 Score=61.45 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=69.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR------- 598 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------- 598 (834)
+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|+..++... .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 345677777888888888888888888887 4564 6777788888888888888888888876 44554
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
...+..+..++...|+.++|.+.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4456666667777777766666665553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00024 Score=76.16 Aligned_cols=113 Identities=10% Similarity=0.099 Sum_probs=79.6
Q ss_pred HhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCC---CchHHH
Q 003273 609 LGRANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEK---DGSYTL 670 (834)
Q Consensus 609 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~ 670 (834)
+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44455666665555443 11122 347788888888888888888888888764 3444 457889
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCccCCceeEEEeCCeEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 003273 671 LSNIYANAGRWKDVARIRSLMKHTGVKKRPGCSWVQGKEGTATFFVGDRTHPQSQKIYEILAGLVQRIK 739 (834)
Q Consensus 671 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~h~~~~~i~~~l~~l~~~~~ 739 (834)
|+.+|..+|++++|..++++..+.-. +. . ...||...+++..|.+...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~-~~----------------l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR-VT----------------H-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-Hh----------------c-CCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988865311 00 1 1379999999888888877765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00084 Score=54.27 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 629 PTPIIWVALLNGCRIHAN---VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
+|+..|..+..++...++ .+.|...++++++++|+++.+...+++.+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567788888888754444 6899999999999999999999999999999999999999999998754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0035 Score=69.92 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 003273 542 GLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGM----------VDQGLKYFDSMSKEFGISARAEHYACIVDLLG 610 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 610 (834)
...++|++.++++++ +.|+ ...|+.--.++.+.|+ ++++++.++.+.+. -+-+...|..-.-++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346789999999999 7887 4556666666777776 99999999999853 2345667888888888
Q ss_pred hcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 003273 611 RAN--RLDEAVELIEGM-P-MEPTPIIWVALLNGCRIHA-NVELGELAANRLLELESEKDGSYTLLSNIYANA------- 678 (834)
Q Consensus 611 ~~g--~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 678 (834)
+.| ++++|+++++++ . ...|...|+--.......| ..+++.+.++++++.+|+|..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 2 2346889999988888888 899999999999999999999999999998875
Q ss_pred -------CCchhHHHHHHHHHhc
Q 003273 679 -------GRWKDVARIRSLMKHT 694 (834)
Q Consensus 679 -------g~~~~a~~~~~~m~~~ 694 (834)
++++++.+.++.....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 4567888877776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0004 Score=61.78 Aligned_cols=100 Identities=10% Similarity=-0.005 Sum_probs=61.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 616 (834)
..+.+.+++|++.+++..+ ..|+ ...|..+..++...++++.+....+ .++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~ 63 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQ 63 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHH
T ss_pred HHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHH
Confidence 3455667778888888777 5664 6667767777777665432111110 133
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhcCCCCC
Q 003273 617 EAVELIEGM-PMEP-TPIIWVALLNGCRIH-----------ANVELGELAANRLLELESEKD 665 (834)
Q Consensus 617 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++.
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 444444443 2223 234555555555444 589999999999999999864
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.18 E-value=3.8e-06 Score=86.74 Aligned_cols=472 Identities=13% Similarity=0.129 Sum_probs=242.5
Q ss_pred CchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCCCchHHHHHHHHH
Q 003273 82 APSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELPSSRCGSSVHAVI 161 (834)
Q Consensus 82 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (834)
+++.|.+.-++...| ..|..|..+....+...+|++-|-+ .-|+..|..++.++.+.|.+++-...+...
T Consensus 40 ~ldRa~eyA~~~n~p----~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSTTTTTSSSSCCCC----CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccHHHHHHHHHhCCc----cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444444444444 3488899999888888888876532 236667889999999999999888887766
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCcc
Q 003273 162 CSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGV 241 (834)
Q Consensus 162 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 241 (834)
.+. ..++.+-+.|+-+|+|.|++.+-++.+. -||+.-...+..-|...|.++.|.-+|..+..-
T Consensus 110 Rk~--~ke~~IDteLi~ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~-------- 173 (624)
T 3lvg_A 110 RKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-------- 173 (624)
T ss_dssp STT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC--------
T ss_pred HHH--hcccccHHHHHHHHHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH--------
Confidence 665 4556677899999999998766443321 136666778888889999988888887766422
Q ss_pred chHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHH
Q 003273 242 SLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAV 321 (834)
Q Consensus 242 t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 321 (834)
.-+-..+..++++..+. +.|+ ...++.+|-.+-.+|...+.+.-|.-.--.+.- ...-...+
T Consensus 174 --akLAstLV~L~~yq~AV-----daAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~el 235 (624)
T 3lvg_A 174 --GRLASTLVHLGEYQAAV-----DGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEEL 235 (624)
T ss_dssp --TTTSSSSSSCSGGGSST-----TTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGG
T ss_pred --HHHHHHHHHHHHHHHHH-----HHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHH
Confidence 11111122222221111 1110 123556666666666666665555433322221 11222334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 003273 322 IAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMY 401 (834)
Q Consensus 322 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 401 (834)
+.-|-..|.+++-+.+++.-.. .-....-+++-|.-.|
T Consensus 236 v~~YE~~G~f~ELIsLlEaglg------------------------------------------lErAHmGmFTELaILY 273 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALG------------------------------------------LERAHMGMFTELAILY 273 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTT------------------------------------------STTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhC------------------------------------------CCchhHHHHHHHHHHH
Confidence 4455555655555555554331 1123455667777777
Q ss_pred HhCCChHHHHHHHHhcCCC-C--------CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHh
Q 003273 402 AKCKSVDVARVMFDAIAPK-N--------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACA 472 (834)
Q Consensus 402 ~~~g~~~~A~~~f~~~~~~-~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~ 472 (834)
+|-. .++-.+-++..-.+ + .....|..++-.|.+..+++.|.. .|.+. ....-+...|.-+ ..
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l---tMi~h-~~~Aw~h~~Fkdi---i~ 345 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH-PTDAWKEGQFKDI---IT 345 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH---TTTSC-HHHHCCGGGGTTT---GG
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH---HHHhC-ChhhccHHHHHHH---HH
Confidence 7653 33333333322211 1 234568888888888888886653 23220 0001111111111 11
Q ss_pred hhhhHHHHHHHHHHHHHhCCCccchhHHhHH-------------HHHHHhcCCHHHHHHHHhhcCCCChhHHHH-HHHHH
Q 003273 473 RLAALRFGRQIHAYVLRNQYEMLIPFVANCL-------------IDMYSRSGDIDTARVVFDNLKQRNVVSWTS-LMTGY 538 (834)
Q Consensus 473 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------------i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~-li~~~ 538 (834)
+.++.+.--+....-+ + ..|...+-| +.++.|.|++.-....+......|...-|- +-..|
T Consensus 346 KVaN~EiyYKAi~FYL----~-e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~ 420 (624)
T 3lvg_A 346 KVANVELYYRAIQFYL----E-FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLF 420 (624)
T ss_dssp GCSCSHHHHHHHHHHT----T-SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHH
T ss_pred HcchHHHHHHHHHHHH----H-hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111111111111111 1 222222333 344444444444444444444344333332 22233
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 618 (834)
....+++ +...-+.+|-+-..+.-|.++ ++ -+-.+.-..-..+|.+.++++++
T Consensus 421 IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 421 ITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp HHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHH-------------------HHHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHHHHHHhcccHHHH
Confidence 3333332 122222222222222222222 11 11222223334567778888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHH
Q 003273 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARI 687 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 687 (834)
+++.++=..-.| .+......|+.+.+++.++-+++.+ +...+.....+|...=+.+-+.++
T Consensus 474 i~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 474 VELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEE--KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHHHHHhhccChHHHHHH
Confidence 877654432222 2334556677777777777776654 345666666667666677766554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=75.87 Aligned_cols=82 Identities=9% Similarity=-0.012 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCC---CchHHHHHH
Q 003273 612 ANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEK---DGSYTLLSN 673 (834)
Q Consensus 612 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 673 (834)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555443 12233 347788888888888888888888888774 3444 457889999
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 003273 674 IYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 674 ~~~~~g~~~~a~~~~~~m~~ 693 (834)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0042 Score=54.64 Aligned_cols=87 Identities=6% Similarity=-0.122 Sum_probs=43.4
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----c
Q 003273 607 DLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELESEKDGSYTLLSNIYAN----A 678 (834)
Q Consensus 607 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 678 (834)
.+|...+.+++|.++|++.-...++..+..|...|.. .+|.++|...++++.+. .++.++..|+.+|.. .
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 3333333334444444333212234444444444443 44555555555555554 245556666666666 5
Q ss_pred CCchhHHHHHHHHHhcC
Q 003273 679 GRWKDVARIRSLMKHTG 695 (834)
Q Consensus 679 g~~~~a~~~~~~m~~~~ 695 (834)
+++++|.+++++..+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 66666666666665544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0022 Score=52.71 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
+...|..+...|...|++++|+..|++.++ ..|+ ...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777777777777777777777776 4454 55666777777777777777777776653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0014 Score=55.43 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003273 527 NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMS 590 (834)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (834)
+...|..+...|...|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|+...
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566666666666666666666666665 3443 4555566666666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.015 Score=59.46 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 003273 525 QRNVVSWTSLMTGYG--MHGL---GDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR 598 (834)
Q Consensus 525 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 598 (834)
..+...|...+.+.. ..+. ..+|+.+|++.++ ..|+ ...+..+.-++.. .. ..+- .+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~~----~~~~-~~ 253 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------RH----SQHP-LD 253 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------HH----HHSC-CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------Hh----ccCC-Cc
Confidence 356777888776643 3333 5789999999999 7888 5556655555431 00 0010 00
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 599 AEHYACIVDLLGRANRLDEAVELIEGMPM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 599 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
...... +..|.+....++. ..++.+|.++.-.+...|+++.|...++++++++| +...|..++.++.-
T Consensus 254 ~~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 000000 1122222222211 23445555555555555666666666666666665 34555566666666
Q ss_pred cCCchhHHHHHHHHHhc
Q 003273 678 AGRWKDVARIRSLMKHT 694 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~~ 694 (834)
.|++++|.+.+++....
T Consensus 323 ~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 66666666666555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0024 Score=56.28 Aligned_cols=113 Identities=11% Similarity=-0.063 Sum_probs=90.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHH
Q 003273 541 HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLD 616 (834)
Q Consensus 541 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 616 (834)
.++.++|+..|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999876 34433 666777778889999999988753 456777888888887 78999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCC
Q 003273 617 EAVELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELES 662 (834)
Q Consensus 617 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 662 (834)
+|.++|++.-..-++..+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988444577788888888887 7899999999999988854
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0022 Score=51.31 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|..+...+...|+++.|+..++++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5578888888999999999999999999999999999999999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0064 Score=64.91 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 003273 576 SGMVDQGLKYFDSMSKEF--GISAR----AEHYACIVDLLGRANRLDEAVELIEGM---------PMEPT-PIIWVALLN 639 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~ 639 (834)
.|++++|..++++..+.. -+-|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355566666555443321 11121 345666666666666666666666554 23355 347888888
Q ss_pred HHHhcCcHHHHHHHHHHHHhc-----CCCCCch
Q 003273 640 GCRIHANVELGELAANRLLEL-----ESEKDGS 667 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 667 (834)
.|..+|++++|+..+++++++ +|+++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 899999999999999988775 6766544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=63.06 Aligned_cols=69 Identities=10% Similarity=-0.041 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCCCC
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM---------PMEPT-PIIWVALLNGCRIHANVELGELAANRLLEL-----ESEKD 665 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~ 665 (834)
+++.+..+|...|++++|+.+++++ +..|+ ..+++.|...|..+|++++|+..+++++++ +|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444555555555555544433 23344 346778888888888888888888888774 67666
Q ss_pred chHH
Q 003273 666 GSYT 669 (834)
Q Consensus 666 ~~~~ 669 (834)
.+-.
T Consensus 411 ~~~~ 414 (429)
T 3qwp_A 411 LIED 414 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.15 Score=42.80 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=102.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEA 618 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 618 (834)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467888888888887662 23445666665555555666666677666543333 346777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 619 VELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
...+-.+. .+.....-.+.....+|..+.-.+++..++.-+|-++.....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77666664 344455667788889999999999999976666667999999999999999999999999999999985
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.01 Score=48.31 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEP-TPI-IWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|+.+.|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566677777777777665 2223 456 777777778888888888888888888888877765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.053 Score=55.43 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=52.2
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 003273 525 QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYA 603 (834)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 603 (834)
..+...|.++...+...|++++|+..+++++.. .|+...|..+...+...|++++|.+.|+... .+.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChHH
Confidence 446667777666666678888888888888774 4776667666777777888888888887665 4566665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.014 Score=51.23 Aligned_cols=66 Identities=9% Similarity=-0.042 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIHA---NVELGELAANRLLELE-S-EKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++..+...+.+++.+.+ +.++|+..++.+++.+ | ++...++.|+-.|.+.|++++|++.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 57777778888887777 6678999999999888 7 45778888999999999999999999988764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0066 Score=49.46 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=53.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 637 LLNGCRIHANVELGELAANRLLELESEKDG-SYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 637 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
....+...|+++.|+..++++++.+|+++. .+..++.+|...|++++|.+.++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445677889999999999999999999999 99999999999999999999999988753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00052 Score=71.21 Aligned_cols=163 Identities=8% Similarity=0.007 Sum_probs=113.1
Q ss_pred chHHHHHHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCC
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 149 (834)
|+.|.+++.+.+.+.+|.+.|=+...| ..|..+|.+..+.|.+++-...+.-.++. .-++..=+.|+-+|++.+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIkA~Dp----s~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIKADDP----SSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 130 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCCCSCC----CSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC
T ss_pred HHHHHHHHHccCchHHHHHHHHhCCCh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC
Confidence 999999999999999999887665544 55889999999999999999866544443 334455568999999999
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 003273 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229 (834)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 229 (834)
++.+-.++. -.||..-...+.+-+...|.++.|.-+|..+..- .-|...+++.|++..|.+.-++
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~--------akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF--------GRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC--------TTTSSSSSSCSGGGSSTTTTTT
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877644332 1466666677888888899999998888776543 3334444555555555544332
Q ss_pred hhhCCCCCCCccchHhHHHHhhccCCchhhh
Q 003273 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGK 260 (834)
Q Consensus 230 m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~ 260 (834)
.. +..||-.+-.+|...+.++.+.
T Consensus 196 An-------s~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 196 AN-------STRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp CC-------SSCSHHHHTHHHHHSCTTTTTT
T ss_pred cC-------ChhHHHHHHHHHhCchHHHHHH
Confidence 22 3456666666666555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.17 Score=59.43 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=60.3
Q ss_pred HHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHH
Q 003273 400 MYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRF 479 (834)
Q Consensus 400 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 479 (834)
...++|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHH
T ss_pred hhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHH
Confidence 3456678888887766543 557788888888888888888888887754 2333333444454444
Q ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 003273 480 GRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDN 522 (834)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 522 (834)
...+-......|.. +.-...|.++|++++|.+++.+
T Consensus 726 ~~~~~~~a~~~~~~-------~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 726 LVTLAKDAETTGKF-------NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCch-------HHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444333321 3334445556666666555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.028 Score=54.99 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=66.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCchhH
Q 003273 616 DEAVELIEGM-PMEPT---PIIWVALLNGCRI-----HANVELGELAANRLLELESEK-DGSYTLLSNIYANA-GRWKDV 684 (834)
Q Consensus 616 ~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 684 (834)
.+|...+++. .+.|+ ...|..|...|.. -|+.+.|++.+++++++.|+. ..+++.++..|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555444 33455 4567777777777 599999999999999999974 99999999999885 999999
Q ss_pred HHHHHHHHhcCCccCCc
Q 003273 685 ARIRSLMKHTGVKKRPG 701 (834)
Q Consensus 685 ~~~~~~m~~~~~~~~~~ 701 (834)
.+.+++......+..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999998876554354
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.064 Score=44.10 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGMP---------MEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+..|+..+.+.|+++.|...++.+- ..+...++..|..++.+.|+.+.|...++++++++|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3344444445555555544444330 1234567888888999999999999999999999999877655443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.84 Score=41.03 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=87.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+.-.++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556789999999988877 4677899999999999999999999998655 455555666677776655
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003273 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRL 657 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 657 (834)
++-+....+ | -++.-...+.-.|+++++.+++.+...-|.. .-..+.+|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 544433221 1 1344444566678888888888777532221 11234466666666665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.39 Score=56.30 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGL 583 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 583 (834)
.+....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...
T Consensus 659 f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 34556788899998888776 4567888888889999999999988888754 333444444455555444
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003273 584 KYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP 626 (834)
Q Consensus 584 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 626 (834)
++-+..... |. ++.-..+|.+.|++++|++++.++.
T Consensus 728 ~~~~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHc-Cc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 433333211 11 2223334445555555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.98 E-value=1.3 Score=39.88 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=72.1
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHH
Q 003273 399 DMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALR 478 (834)
Q Consensus 399 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~ 478 (834)
+...++|+++.|.++.+.+. +...|..+.......|+++-|.+.|.+... +..++--+...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHH
Confidence 44568899999999988774 677899999999999999999999998865 444444555566665
Q ss_pred HHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 003273 479 FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524 (834)
Q Consensus 479 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 524 (834)
.-..+-......|-. +.-...+.-.|+++++.++|.+..
T Consensus 78 ~L~kla~iA~~~g~~-------n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 78 KLSKMQNIAQTREDF-------GSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCccH-------HHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555554444444432 344444555666666666665543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.37 Score=42.21 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 003273 546 KAHWAFDQMRKEGLAPDGVTFLVLLYACSHSG---MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELI 622 (834)
Q Consensus 546 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 622 (834)
.+.+.|.+....|. ++..+-..+..++.+++ ++++|+.+++...+. . .|+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~------------------------ 68 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE------------------------ 68 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH------------------------
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc------------------------
Confidence 34444555444433 45555555555666665 455666666665542 1 110
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 623 EGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 623 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
.+...+-.|.-+|.+.|+++.|.+.++++++++|+|..+.
T Consensus 69 ------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 69 ------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp ------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 0233455566678899999999999999999999876543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.16 Score=42.71 Aligned_cols=65 Identities=8% Similarity=-0.101 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PTPIIWVALLNGCRIHANVEL---GELAANRLLELE-S-EKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
++..+-..+.+++.+..+... |+.+++.++..+ | ........|+-.+.+.|++++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445555544443333 555555555554 3 2334555666666666666666666666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.27 Score=39.20 Aligned_cols=67 Identities=19% Similarity=0.116 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003273 597 ARAEHYACIVDLLGRANR---LDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESE 663 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 663 (834)
+++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|+++.|+..++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666666666654443 57777777766 2334 3556666777788888888888888888888887
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=1.3 Score=37.92 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 628 EPTPIIWVALLNGCRIHA---NVELGELAANRLLELESE-KDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 628 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|+..+--.+.+++.+.. +..+++.+++.++..+|. .......|+-.|.+.|++++|++..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555666655544 455778888888887774 3456677888888888888888888888763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.44 Score=46.61 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHhhcCCCC--hhHHHHHHHH-HHHc--C------ChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHh
Q 003273 510 SGDIDTARVVFDNLKQRN--VVSWTSLMTG-YGMH--G------LGDKAHWAFDQMRKEGLAPD---GVTFLVLLYACSH 575 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~~~--~~~~~~li~~-~~~~--g------~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 575 (834)
.|+..+-...+.++.+.+ ...|..++.+ +... | ....|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344444455555555333 3467776653 3332 3 25677888888888 6787 5578888888888
Q ss_pred -----cCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 003273 576 -----SGMVDQGLKYFDSMSKEFGISA--RAEHYACIVDLLGRA-NRLDEAVELIEGM 625 (834)
Q Consensus 576 -----~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 625 (834)
-|+.++|.++|++..+ +.| +..++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4899999999998873 456 377777888888884 8888888888776
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.31 E-value=7.4 Score=39.02 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVF----RQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ll 357 (834)
.|.++..-|.+.+++++|++++..-- ..+.+.|+...|-++- +-..+.++++|..+...++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35677788999999999999875532 2355667777666655 4445678889988877777
Q ss_pred Hhhhhhchhhh-hhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh
Q 003273 358 SGCASVGALLL-GKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436 (834)
Q Consensus 358 ~a~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 436 (834)
..+.....-+- -..+...+++..........-|......+...|.+.+++.+|+.-|- ....+....+..|+.-+.+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHH
Confidence 76665443221 23344444444333222344577788889999999999999988883 2112223556555554444
Q ss_pred cC
Q 003273 437 NG 438 (834)
Q Consensus 437 ~g 438 (834)
.+
T Consensus 180 ~~ 181 (336)
T 3lpz_A 180 QD 181 (336)
T ss_dssp TS
T ss_pred hc
Confidence 43
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.15 E-value=6.8 Score=38.97 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHhHHHHHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDV----FRQMQFCGLEPNVVTLVSLL 357 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll 357 (834)
.|.++..-|.+.+++++|.+++..--. .+.+.|+...|-++ ++-..+.++.+|..+...++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 356788889999999999998765332 35566777766665 44455668889988887777
Q ss_pred Hhhhhhchhh-hhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh
Q 003273 358 SGCASVGALL-LGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ 436 (834)
Q Consensus 358 ~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 436 (834)
..+.....-+ .-..+...+++......+....|+.....+...|.+.|++.+|+.-|-.-. ..|...+..|+.-+.+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~--~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT--HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CccHHHHHHHHHHHHH
Confidence 7665533222 223455555555433322234577888899999999999999988775211 1245555555554444
Q ss_pred c
Q 003273 437 N 437 (834)
Q Consensus 437 ~ 437 (834)
.
T Consensus 178 ~ 178 (312)
T 2wpv_A 178 Q 178 (312)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.31 Score=55.19 Aligned_cols=52 Identities=15% Similarity=0.002 Sum_probs=49.1
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 640 GCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 640 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
-|...|+++.|.++++++...-|.+..+|..|+.+|...|+|+.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3778899999999999999999999999999999999999999999998877
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.20 E-value=0.65 Score=37.85 Aligned_cols=65 Identities=15% Similarity=-0.004 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELE-------SEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
++.-+-.|...+...|+++.|..-++.+++.. +..+.++..|+.+|.+.|++++|...++.+.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998863 234567999999999999999999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.21 E-value=3 Score=34.99 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHhhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHH
Q 003273 597 ARAEHYACIVDLLGRANRLDE---AVELIEGMP-ME-P--TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYT 669 (834)
Q Consensus 597 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 669 (834)
|+..+-..+.-++.+..+..+ ++.+++..- .. | .....-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334444444444444444433 444444431 11 2 1223344556788899999999999999999998765443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.56 E-value=8.7 Score=32.45 Aligned_cols=81 Identities=9% Similarity=-0.050 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003273 509 RSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDS 588 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 588 (834)
+||++......+-.+. .+....+.-+.....+|+-+.-.+++.++.. ..+|++.....+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444443332 2333444455566666666666666666433 2456666666666677777777777776666
Q ss_pred hHH
Q 003273 589 MSK 591 (834)
Q Consensus 589 m~~ 591 (834)
+-+
T Consensus 151 AC~ 153 (172)
T 1wy6_A 151 ACK 153 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.35 E-value=1.6 Score=36.78 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 629 PTPIIWVALLNGCRIHA---NVELGELAANRLLELESE-KDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
|+..+--.+.+++.+.. +...|+.+++.+++.+|. ....+..|+-.+.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444555544333 345667777777766663 345566777777777777777777777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.02 E-value=2.8 Score=36.17 Aligned_cols=116 Identities=11% Similarity=0.164 Sum_probs=74.8
Q ss_pred CCCCcchhhHHHHHHHHHhCCCc------hhHHHHHHHHHHcCCCCCccc----HHHHHHHH---ccCCCchHHHHHHHH
Q 003273 94 SPSPFSVFWWNALIRRAVRLRLP------DNAFRLFLQMMRRGWHPDEYT----FPFVLKAC---GELPSSRCGSSVHAV 160 (834)
Q Consensus 94 ~~~~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~t----~~~ll~~~---~~~~~~~~a~~~~~~ 160 (834)
.+.++ .+|=..+.-.-+.|++ ++.+++|++.... ++|+... |..+.--| ...++.+.|+++|..
T Consensus 9 ~p~~y--d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 9 MANNP--EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp -CCSH--HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34455 7888888888888998 8888888887764 6775421 22111111 123678888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHH
Q 003273 161 ICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAA 213 (834)
Q Consensus 161 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 213 (834)
+++.+ ..=..+|......-.+.|++..|++++......++.+.....+.|.-
T Consensus 86 a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 86 ARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 87663 22267777777777788888888888877665544455555544443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.53 E-value=21 Score=35.48 Aligned_cols=83 Identities=8% Similarity=0.024 Sum_probs=53.4
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH---GLGDKAHWAFDQMRKEGLAPDGVTFLVLLY 571 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 571 (834)
.++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |...++--..-+ .++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL- 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF- 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-
Confidence 67888899999999999999999988643323455555555544443 443332221111 122
Q ss_pred HHHhcCCHHHHHHHHHHhHHh
Q 003273 572 ACSHSGMVDQGLKYFDSMSKE 592 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~ 592 (834)
-|...|++..|..+|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 355678899999888876543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=34 Score=37.87 Aligned_cols=114 Identities=9% Similarity=-0.007 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhH----HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 542 GLGDKAHWAFDQMRKEGLAPDGVT----FLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 542 g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
.+.+.|..++....+.+. .+... ...+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 367888888888765432 23222 222222333444345566666654322 2333233334444457789999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 618 AVELIEGMPMEP-T-PIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 618 A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
|...|+.|+..+ + ....-=+..+....|+.+.|...++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999998886432 2 11111233355677888888888888875
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.99 E-value=23 Score=35.41 Aligned_cols=82 Identities=7% Similarity=-0.020 Sum_probs=50.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 495 LIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
.++.....+...|.+.+++.+|+..|-.-..+....+..|+..+...+...++ |...-..+ --|.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV-L~yL 198 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV-LPYL 198 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH-HHHH
Confidence 67888899999999999999999998533233335665555544443321111 11111222 2355
Q ss_pred hcCCHHHHHHHHHHhHH
Q 003273 575 HSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 575 ~~g~~~~a~~~~~~m~~ 591 (834)
..+++..|..+++...+
T Consensus 199 ~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 199 LVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 66788888887766554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.77 E-value=46 Score=38.57 Aligned_cols=308 Identities=14% Similarity=0.041 Sum_probs=144.0
Q ss_pred HHHcCCCHHHHHHHHHHhHhcC--CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHhhhhhc
Q 003273 289 GYSRIGSFEDAFALFKKMRQEN--VKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL--EPNVVTLVSLLSGCASVG 364 (834)
Q Consensus 289 ~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~~ 364 (834)
+....|+.++++.+++.....+ -.|.+..-..+.-|....|..+++++++...+...- .-+..+-.....++...|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777777777776655421 111122233344456666766677777776654321 111001111111221222
Q ss_pred hh------hhhhHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc-chHHHHHHHH
Q 003273 365 AL------LLGKETHCYTIKRVLSVDGSHPDDL--MVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA-TWTVMIGSYS 435 (834)
Q Consensus 365 ~~------~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~ 435 (834)
-. +.+...+..++.. . .... ...-+|.-.|.-.|+-+....++..+.+...+.+ -.-.+.-++.
T Consensus 463 la~~GS~~eev~e~L~~~L~d------d-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYN------D-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHT------C-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHhc------C-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11 1222222222221 1 1111 1223344455566776666666665543222222 2233344555
Q ss_pred hcCChhHHHHHHHhhcccCCCCcCCcccHH---HHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHH--HHHhc
Q 003273 436 QNGGANDALALFPQMFQQDKLVKPNAFTLS---CALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID--MYSRS 510 (834)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~y~k~ 510 (834)
..|+.+.+-.+.+.+.. .......|. .+.-+|+..|+.....+++..+..... ..+-...+. +....
T Consensus 536 ~~g~~e~~~~li~~L~~----~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~----d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 536 NYGRQELADDLITKMLA----SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN----DDVRRAAVIALGFVLL 607 (963)
T ss_dssp TTTCGGGGHHHHHHHHH----CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTS
T ss_pred hCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc----HHHHHHHHHHHHhhcc
Confidence 77888888888777764 111222333 223466777887777777777775422 222233333 33346
Q ss_pred CCHHHHHHHHhhcC-CCChhHH--HHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHH--hcC-------
Q 003273 511 GDIDTARVVFDNLK-QRNVVSW--TSLMTGYGMHGLG-DKAHWAFDQMRKEGLAPDGVTFLVLLYACS--HSG------- 577 (834)
Q Consensus 511 g~~~~A~~~~~~~~-~~~~~~~--~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~g------- 577 (834)
|+.+.+.++++.+. ..|...- .++.-|....|.. .+++.++..+.. .+|..+-...+.++. -.|
T Consensus 608 g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~ 684 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNP 684 (963)
T ss_dssp SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccch
Confidence 66666777776554 2343332 2333344444443 578888888864 455444333333332 222
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 003273 578 MVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614 (834)
Q Consensus 578 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 614 (834)
++..-++.+.....+..-.++......+..++...|.
T Consensus 685 rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 685 QVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp THHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 3333334333333211223444445555555554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.49 E-value=1.3 Score=38.20 Aligned_cols=53 Identities=6% Similarity=-0.139 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
+|++.|..+|+.+++++..-+..+...+.--.+.|+...|++++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67777788888777765555556666666667788888888888877765543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.48 E-value=5.8 Score=35.00 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGMPME 628 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 628 (834)
+.+.---+..+|.+.|+.++|+..++.+|.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 4455555777788888888888888887643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.70 E-value=43 Score=35.35 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCCh--h
Q 003273 319 SAVIAGYAQRGHGHEALDVFRQMQFC--GLEPN---VVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDD--L 391 (834)
Q Consensus 319 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ 391 (834)
..|...|...|++.+|.+++.++... |..+. ...+...++.|...+++..+..+...+....... ..+|+ .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~ 218 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHH
Confidence 45678888999999999999998753 32222 2345566778888999999988888775443221 11222 3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhc
Q 003273 392 MVINALIDMYAKCKSVDVARVMFDAI 417 (834)
Q Consensus 392 ~~~~~li~~y~~~g~~~~A~~~f~~~ 417 (834)
..+...+..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45566777777788888887776655
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=84.54 E-value=55 Score=36.39 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhc
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQR 328 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 328 (834)
-++|-.+.|+|++++|.++.++.... +.--...+-..+..|+..
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 36677788999999999988776532 110124677777777643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.75 E-value=3.2 Score=43.32 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhHH
Q 003273 282 SWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-----CGLEPNVVTL 353 (834)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~ 353 (834)
+...++..+...|++++|...+..+....+- +...|..+|.++.+.|+..+|++.|++..+ .|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3456778888999999999999998877555 777999999999999999999999998754 4999988763
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.51 E-value=51 Score=33.99 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=81.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCChhHHH----
Q 003273 501 NCLIDMYSRSGDIDTARVVFDNLKQ--------RNVVSWTSLMTGYGMH-GLGDKAHWAFDQMRKEGLAPDGVTFL---- 567 (834)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~---- 567 (834)
..|...|.+.|+.++...++..... +..-.-..|+..+... +..+.-.++..+.++-. +-+..+|.
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4566677777777777777666542 1222344555555442 23344444444444311 01122331
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHH
Q 003273 568 --VLLYACSHSGMVDQGLKYFDSMSKEFGISAR----AEHYACIVDLLGRANRLDEAVELIEGMP-----MEPTPIIWVA 636 (834)
Q Consensus 568 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ 636 (834)
-++..|...|++.+|.+++..+.++..-..+ .+.|..-+.+|...|++.++...+.+.. +.+++.+-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 4556677777777777777766654322112 4456666667777777777776665441 1133322211
Q ss_pred H--HHH--HH-hcCcHHHHHHHHHHHH
Q 003273 637 L--LNG--CR-IHANVELGELAANRLL 658 (834)
Q Consensus 637 l--l~~--~~-~~g~~~~a~~~~~~~~ 658 (834)
+ .+| +. ..+++..|-..|-..+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 111 34 5667776666555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.04 E-value=8.6 Score=43.52 Aligned_cols=128 Identities=11% Similarity=0.041 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCCCHh----
Q 003273 284 NAMVTGYSRIGS-FEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGH-GHEALDVFRQMQFC------GLEPNVV---- 351 (834)
Q Consensus 284 ~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~pd~~---- 351 (834)
..++..+...++ ++.|..+|+++....+.-+......+|..+.+.++ --+|+.++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444555555 57788888888776332122122233333333322 22455555554421 1111111
Q ss_pred --HH-HHHH----HhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 003273 352 --TL-VSLL----SGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIA 418 (834)
Q Consensus 352 --t~-~~ll----~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 418 (834)
.+ ..+| .-|.+.|+++.|..+-..++. ..|.+-.+|..|...|.+.|+++.|.-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-------~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-------LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 00 1122 224567888888888888877 457778889999999999999999998888886
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.99 E-value=11 Score=33.13 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhc-CCCCCe-------eeHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH-hH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQE-NVKLNV-------VTWSAVIAGYAQRGHGHEALDVFRQMQFCG-LEPNV-VT 352 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-~t 352 (834)
+-.-+..+...|.++.|+-+.+.+... +..|++ .++..+..++...|++..|...|++.++.. .-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344456667778888888777765432 122332 145566788889999999999999875421 11111 11
Q ss_pred HHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccc
Q 003273 353 LVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVAT 426 (834)
Q Consensus 353 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 426 (834)
..++-.--...+. .....+..+---+..+|.+.++.++|..+++.++.+.++...
T Consensus 103 ~~~~~~~ss~p~s-------------------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 103 RPSTGNSASTPQS-------------------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred cccccccCCCccc-------------------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 1111000000000 023445566666888999999999999999998865555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.40 E-value=11 Score=29.73 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=20.9
Q ss_pred hcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 003273 261 QCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMR 307 (834)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 307 (834)
..|++++|..+.+....||.+.|-+|... +.|..+++..-+.++.
T Consensus 52 NrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 52 NRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred cchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 34455555555555555555555544332 3344444444443433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 834 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 5e-05
Identities = 47/369 (12%), Positives = 116/369 (31%), Gaps = 22/369 (5%)
Query: 261 QCGMMEEAKKVFERM---KVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317
Q G E A++ ++ + + + + + + + + ++N L
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL---- 66
Query: 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTI 377
Y+ G+ ++ ++ + + AL+ +
Sbjct: 67 ----AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 378 KRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQN 437
V ++ + + + + A + + AI + W+ + ++
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 438 GGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIP 497
G A+ F + D PN F + + A F R + AY+
Sbjct: 183 GEIWLAIHHFEKAVTLD----PN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 498 FVANCLIDMYSRSGDIDTARVVFDN---LKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554
V L +Y G ID A + L+ ++ +L G +A ++
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
Query: 555 RKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANR 614
+ + L G +++ ++ + + F A A ++ + +L + +
Sbjct: 298 LRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGK 354
Query: 615 LDEAVELIE 623
L EA+ +
Sbjct: 355 LQEALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.96 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.35 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.2 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.02 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.84 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.7 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.54 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.33 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.27 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.76 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.56 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.02 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.24 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.7 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 89.65 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.3e-21 Score=206.86 Aligned_cols=242 Identities=13% Similarity=0.145 Sum_probs=187.9
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhh
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARL 474 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~ 474 (834)
.........+....+...+.......| +...+..+...+...|++++|...+.+.+. ..|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p--------------- 200 (388)
T d1w3ba_ 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT----LDP--------------- 200 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCT---------------
T ss_pred cccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHH----hCc---------------
Confidence 333444445555555555544432233 344555556666666666666666666654 233
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAF 551 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 551 (834)
.++..+..+...|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|
T Consensus 201 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 260 (388)
T d1w3ba_ 201 --------------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp --------------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345556677788888888888888888765 356677888888999999999999999
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003273 552 DQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP 629 (834)
Q Consensus 552 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 629 (834)
++.++ +.|+ ..++..+..++...|++++|.+.++.... ..+.+...+..+..++.+.|++++|++.+++. ...|
T Consensus 261 ~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 336 (388)
T d1w3ba_ 261 RRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99998 6776 77888999999999999999999998875 34556778889999999999999999999986 4455
Q ss_pred C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 003273 630 T-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGR 680 (834)
Q Consensus 630 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 680 (834)
+ ..+|..+...+...|+.++|+..++++++++|+++.+|..|+++|.+.|+
T Consensus 337 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4 66889999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.6e-20 Score=195.33 Aligned_cols=354 Identities=13% Similarity=0.043 Sum_probs=259.7
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchh
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGAL 366 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 366 (834)
...+.+.|++++|.+.|+++.+..+. +...|..+...|.+.|++++|+..|++.++.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------- 62 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---------------------- 62 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------
Confidence 34566778888888888888776544 5667778888888888888888888887653
Q ss_pred hhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHH
Q 003273 367 LLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALA 445 (834)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 445 (834)
.|.+..++..+...|.+.|++++|...+.......+ +...+..........+....+..
T Consensus 63 --------------------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (388)
T d1w3ba_ 63 --------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred --------------------CCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 223334455555566666666666666655543332 22333333334444444444444
Q ss_pred HHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-
Q 003273 446 LFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK- 524 (834)
Q Consensus 446 l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~- 524 (834)
....... . ..................+....+............ .....+..+...+...|++++|...+++..
T Consensus 123 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 197 (388)
T d1w3ba_ 123 AYVSALQ--Y-NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHH--H-CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ccccccc--c-ccccccccccccccccccchhhhhHHHHHHhhccCc--chhHHHHhhcccccccCcHHHHHHHHHHHHH
Confidence 4444433 1 111222222333333444445555555555544432 566777888899999999999999999776
Q ss_pred -C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChH
Q 003273 525 -Q-RNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAP-DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAE 600 (834)
Q Consensus 525 -~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 600 (834)
. .+...|..+...+...|++++|+..+++.... .| +...+..+..++...|++++|...|+.+.+ +.| +..
T Consensus 198 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~ 272 (388)
T d1w3ba_ 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPD 272 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHH
T ss_pred hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHH
Confidence 3 45678999999999999999999999999884 44 467788888999999999999999999874 344 467
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 003273 601 HYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANA 678 (834)
Q Consensus 601 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 678 (834)
.+..+..+|.+.|++++|++.++.. ..+.+...+..+...+...|+.++|+..++++++++|+++.++..++.+|...
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 352 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 8999999999999999999999876 23356778999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHh
Q 003273 679 GRWKDVARIRSLMKH 693 (834)
Q Consensus 679 g~~~~a~~~~~~m~~ 693 (834)
|++++|.+.+++..+
T Consensus 353 g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 353 GKLQEALMHYKEAIR 367 (388)
T ss_dssp TCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.1e-13 Score=138.34 Aligned_cols=194 Identities=14% Similarity=0.039 Sum_probs=134.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-----------
Q 003273 499 VANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGV----------- 564 (834)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------- 564 (834)
.+..+..+|...|++++|...|++.. ..+...|..+...|...|++++|++.+++... ..|+..
T Consensus 55 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~ 132 (323)
T d1fcha_ 55 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAG 132 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC-------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhh
Confidence 33444444444444444444444433 12334455555555555555555555555544 222210
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003273 565 -----TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVAL 637 (834)
Q Consensus 565 -----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 637 (834)
.....+..+...+.++++...|....+...-.++...+..+...+.+.|++++|++.+++. ...| +...|..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (323)
T d1fcha_ 133 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 212 (323)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhh
Confidence 0111222334456678888888877654344456778888999999999999999999886 2234 47789999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 638 LNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 638 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...+...|+.++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 213 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 213 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2e-12 Score=133.00 Aligned_cols=241 Identities=15% Similarity=0.094 Sum_probs=145.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhc
Q 003273 285 AMVTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVG 364 (834)
Q Consensus 285 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 364 (834)
.....+.+.|++++|...|++..+..+. +..+|..+...|...|++++|+..|.+..+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--------------------- 81 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLE--------------------- 81 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhc---------------------
Confidence 4455566777777777777777766544 556666677777777777777777666654
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHhcCChhHHH
Q 003273 365 ALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQNGGANDAL 444 (834)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 444 (834)
..|.+...+..+...|.+.|++++|.+.++......|+............
T Consensus 82 ---------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------- 131 (323)
T d1fcha_ 82 ---------------------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------- 131 (323)
T ss_dssp ---------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred ---------------------cccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhh---------
Confidence 23445566777777777777777777777766543343211100000000
Q ss_pred HHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 003273 445 ALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK 524 (834)
Q Consensus 445 ~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 524 (834)
...+.......+..+...+....+...+..+++......++.++..+...+...|++++|...|++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 199 (323)
T d1fcha_ 132 ------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 199 (323)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccc
Confidence 00000011111222334455666666666666554432456666777777777777777777777664
Q ss_pred ---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003273 525 ---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSK 591 (834)
Q Consensus 525 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (834)
..+...|..+...|...|++++|++.|++.++ +.|+ ..++..+..+|.+.|++++|+..|++..+
T Consensus 200 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23456677777777777777777777777776 4565 55677777777777777777777776653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1e-08 Score=105.79 Aligned_cols=265 Identities=13% Similarity=0.018 Sum_probs=183.9
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCCC------ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHH
Q 003273 396 ALIDMYAKCKSVDVARVMFDAIAPKNRD------VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALM 469 (834)
Q Consensus 396 ~li~~y~~~g~~~~A~~~f~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~ 469 (834)
.....+...|++++|.+.|++.....|+ ...++.+...|...|++++|+..|++... ..|......
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~---- 88 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ----MARQHDVWH---- 88 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHTTCHH----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHhhcchH----
Confidence 3456677889999999888876544443 23566677788888888888888888765 111111000
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcC-------CCC----hhHHHHHHHHH
Q 003273 470 ACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLK-------QRN----VVSWTSLMTGY 538 (834)
Q Consensus 470 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~ 538 (834)
.....+..+...|...|++..|...+.... .+. ...+..+...+
T Consensus 89 -------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 143 (366)
T d1hz4a_ 89 -------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 143 (366)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHH
Confidence 122333455666777788777777776543 111 12455566778
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAP----DGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-----AEHYACIVDLL 609 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~ 609 (834)
...|+.+.+...+.+........ ...++......+...+...++...+........-... ...+..+...+
T Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T d1hz4a_ 144 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 223 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 88999999999999887743221 2345556666788889999988888766543222211 33456677788
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHh
Q 003273 610 GRANRLDEAVELIEGMP-MEP-----TPIIWVALLNGCRIHANVELGELAANRLLEL------ESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~ 677 (834)
...|++++|.+.+++.. ..| ....+..+...+...|+.+.|...+++++.. .|....++..++.+|..
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 303 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 89999999999998762 111 1345667778899999999999999998753 45556789999999999
Q ss_pred cCCchhHHHHHHHHHh
Q 003273 678 AGRWKDVARIRSLMKH 693 (834)
Q Consensus 678 ~g~~~~a~~~~~~m~~ 693 (834)
.|++++|.+.+++..+
T Consensus 304 ~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 304 AGRKSDAQRVLLDALK 319 (366)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=4.4e-09 Score=106.54 Aligned_cols=221 Identities=11% Similarity=0.100 Sum_probs=158.9
Q ss_pred chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHH
Q 003273 426 TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLID 505 (834)
Q Consensus 426 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 505 (834)
.++.+...+.+.+.+++|+++++++++ +.|+ +..+|+....
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~-----------------------------------~~~a~~~r~~ 85 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIE----LNAA-----------------------------------NYTVWHFRRV 85 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTT-----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH----HCCC-----------------------------------ChHHHHHHHH
Confidence 455666677788888888888888887 5664 4445566666
Q ss_pred HHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 003273 506 MYSRSG-DIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 506 ~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 580 (834)
.+.+.| ++++|...++... ..+..+|+.+...+...|++++|+..++++++ +.|+ ...|..+...+.+.|+++
T Consensus 86 ~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~ 163 (315)
T d2h6fa1 86 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWD 163 (315)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhH
Confidence 666665 4788888887765 34677888888888888888888888888888 5665 777888888888888888
Q ss_pred HHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003273 581 QGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANR------LDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGE 651 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 651 (834)
+|++.++.+++ +.| +...|+.+..++.+.|. +++|++.+.++ ...| +...|..+...+...| .+++.
T Consensus 164 ~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~ 239 (315)
T d2h6fa1 164 NELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYP 239 (315)
T ss_dssp THHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCH
T ss_pred HHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHH
Confidence 88888888874 344 45567766666666554 57788877765 3334 5778888877665544 57788
Q ss_pred HHHHHHHhcCCCCCc--hHHHHHHHHHhc--CCchhHHHHHHHH
Q 003273 652 LAANRLLELESEKDG--SYTLLSNIYANA--GRWKDVARIRSLM 691 (834)
Q Consensus 652 ~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a~~~~~~m 691 (834)
..+++++++.|+... .+..++.+|... +..+.+...+++.
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 240 NLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999998887544 456677777554 5555555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=5.8e-09 Score=105.61 Aligned_cols=192 Identities=8% Similarity=0.041 Sum_probs=160.9
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGL-GDKAHWAFDQMRKEGLAPD-GVTFLVLLY 571 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 571 (834)
..+++-+...+.+.+..++|+.+++++. .| +...|+.....+...|. +++|+..+++.++ +.|+ ..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhH
Confidence 4566777788899999999999999987 34 66789999999888774 8999999999999 6786 788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---
Q 003273 572 ACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHA--- 645 (834)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--- 645 (834)
.+...|++++|+..++.+.+ +.| +...|..+..++.+.|++++|++.++++ ...| +...|+.+...+...+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence 99999999999999999984 344 4788999999999999999999999988 3334 5778887776655444
Q ss_pred ---cHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 646 ---NVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 646 ---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+.+.|...+.++++++|++..++..++.++...| .+++.+.++...+.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 3688999999999999999999999999877655 57788888777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.3e-07 Score=97.11 Aligned_cols=275 Identities=12% Similarity=0.025 Sum_probs=175.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCC----eeeHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HhHHH
Q 003273 284 NAMVTGYSRIGSFEDAFALFKKMRQENVKLN----VVTWSAVIAGYAQRGHGHEALDVFRQMQFCGL-EPN----VVTLV 354 (834)
Q Consensus 284 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~ 354 (834)
......+...|++++|+.+|++..+..+..+ ...++.+...|...|++++|+..|++..+... .++ ..++.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345667789999999999998877533211 23566777888899999999999998765321 112 12344
Q ss_pred HHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCC------Cccch
Q 003273 355 SLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPD-DLMVINALIDMYAKCKSVDVARVMFDAIAPKNR------DVATW 427 (834)
Q Consensus 355 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~------~~~~~ 427 (834)
.+...+...|++..+...+...............+ ....+..+...|...|+++.|...+.......+ ...++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 45556677788888888877776643322212222 233555667778888888888877766542211 11223
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHH
Q 003273 428 TVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMY 507 (834)
Q Consensus 428 ~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 507 (834)
..+...+...++..++...+.+........... .+.....+..+...+
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 223 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH--------------------------------SDWISNANKVRVIYW 223 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC--------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc--------------------------------CchHHHHHHHHHHHH
Confidence 334444555666666665555443300000000 002233455667778
Q ss_pred HhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-hhHHHHHHHHHHh
Q 003273 508 SRSGDIDTARVVFDNLKQR-------NVVSWTSLMTGYGMHGLGDKAHWAFDQMRK----EGLAPD-GVTFLVLLYACSH 575 (834)
Q Consensus 508 ~k~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~ 575 (834)
...|+.++|...+...... ....+..+...+...|++++|...+++.+. .+..|+ ..++..+..++..
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 303 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 8899999999999877621 123566677888899999999999988764 245555 4567777788888
Q ss_pred cCCHHHHHHHHHHhH
Q 003273 576 SGMVDQGLKYFDSMS 590 (834)
Q Consensus 576 ~g~~~~a~~~~~~m~ 590 (834)
.|++++|.+.+++..
T Consensus 304 ~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 304 AGRKSDAQRVLLDAL 318 (366)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998888664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=6.5e-09 Score=102.21 Aligned_cols=193 Identities=13% Similarity=-0.000 Sum_probs=131.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 003273 497 PFVANCLIDMYSRSGDIDTARVVFDNLK---QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYA 572 (834)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 572 (834)
..++..+...|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|+..|+++++ +.|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHH
Confidence 3456677888899999999999998876 34677888999999999999999999999988 5676 6678888888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH----hcCcH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMP-MEPTPIIWVALLNGCR----IHANV 647 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~----~~g~~ 647 (834)
+...|++++|...|+...+. .+.+......+...+.+.+..+.+..+..... ..++...++. +..+. ..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 88999999999999888753 12233344444445555555544444433321 1122222222 12211 22234
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 648 ELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 648 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+.+...+.......|+...+|..|+.+|...|++++|.+.+++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 44444444455556666778888999999999999999999888754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=6.5e-09 Score=102.19 Aligned_cols=200 Identities=13% Similarity=-0.015 Sum_probs=134.9
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHH
Q 003273 425 ATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLI 504 (834)
Q Consensus 425 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 504 (834)
..|..+...|.+.|++++|++.|++.++ +.| .++.+++.+.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p-----------------------------------~~~~a~~~lg 78 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALA----IRP-----------------------------------DMPEVFNYLG 78 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCC-----------------------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCC-----------------------------------CCHHHHhhhc
Confidence 3455666777777777788777777766 445 5666778889
Q ss_pred HHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 003273 505 DMYSRSGDIDTARVVFDNLK--QR-NVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVD 580 (834)
Q Consensus 505 ~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 580 (834)
.+|.+.|++++|...|+++. .| +..+|..+...|...|++++|+..|++.++ ..|+ ......+..++...+..+
T Consensus 79 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~ 156 (259)
T d1xnfa_ 79 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQ 156 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999887 33 566888999999999999999999999988 4564 444444444556666655
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHH
Q 003273 581 QGLKYFDSMSKEFGISARAEHYACIVDLLGRA----NRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAA 654 (834)
Q Consensus 581 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 654 (834)
....+...... ..+....+. ++..+... +..+.+...+... ...|+ ..+|..+...+...|+.+.|...+
T Consensus 157 ~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 232 (259)
T d1xnfa_ 157 AKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 232 (259)
T ss_dssp HHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555554432 222222222 22232222 2233333322211 11132 346777888899999999999999
Q ss_pred HHHHhcCCCCCchHH
Q 003273 655 NRLLELESEKDGSYT 669 (834)
Q Consensus 655 ~~~~~~~p~~~~~~~ 669 (834)
+++++.+|++...|.
T Consensus 233 ~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 233 KLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHTTCCTTCHHHH
T ss_pred HHHHHcCCCCHHHHH
Confidence 999999998765553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=6.6e-10 Score=114.30 Aligned_cols=270 Identities=10% Similarity=-0.004 Sum_probs=186.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCCCc-cchHHHHHH----------HHhcCChhHHHHHHHhhcccCCCCcCCccc
Q 003273 395 NALIDMYAKCKSVDVARVMFDAIAPKNRDV-ATWTVMIGS----------YSQNGGANDALALFPQMFQQDKLVKPNAFT 463 (834)
Q Consensus 395 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~----------~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t 463 (834)
..++....+.+..++|..+++++....|+. ..|+..-.. +...|++++|+.+++..++ ..|+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~----~~pk~~~ 108 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKSYG 108 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTCHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH----hCCCcHH
Confidence 334444444555689999999887667754 346543322 3334557889999999877 5565543
Q ss_pred -HHHHHHHHhhhh--hHHHHHHHHHHHHHhCCCccchhH-HhHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 003273 464 -LSCALMACARLA--ALRFGRQIHAYVLRNQYEMLIPFV-ANCLIDMYSRSGDIDTARVVFDNLKQ---RNVVSWTSLMT 536 (834)
Q Consensus 464 -~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~ 536 (834)
+.....++...+ +++.+...+..+.+.... .... +..+...+...|..++|...++.+.+ .+..+|+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~ 186 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCch--hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344444444444 478888888888876543 3333 34455777788999999999988873 35678888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 003273 537 GYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLD 616 (834)
Q Consensus 537 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 616 (834)
.+.+.|++++|...+++..+ +.|+.. .+...+...+..+++...+..... .-.+....+..++..+...|+.+
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~ 259 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSEL 259 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHH
Confidence 89999988888776665555 333322 223334555666777777776653 23344455666777788889999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 617 EAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 617 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
+|.+.+.+. +..|+ ..+|..+...+...|+.++|...++++++++|++...|..|+..+.-
T Consensus 260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 999988776 44443 45788888889999999999999999999999888888888777763
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.84 E-value=1.5e-07 Score=94.82 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=143.1
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C-hhHHHHHHHHHHHcCChHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQ--R-N-VVSWTSLMTGYGMHGLGDKAHWA 550 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~l 550 (834)
+..+.+..++...++...+ .+..++...+..+.+.|+++.|..+|+++.. | + ...|...+..+.+.|+.++|.++
T Consensus 78 ~~~~~a~~i~~ral~~~~p-~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 4567788888888765444 6777888888899999999999999998752 3 3 34788889888999999999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 003273 551 FDQMRKEGLAPD-GVTFLVLLYA-CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--- 625 (834)
Q Consensus 551 ~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 625 (834)
|+++++. .|+ ...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|+.+|++.
T Consensus 157 ~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 157 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9999884 443 3344443332 34568899999999988864 3345677888999999999999999999875
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 626 -PMEPT--PIIWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 626 -~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
+..|+ ...|...+..-..+|+.+.+..+.+++.++-|++.
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 23332 45888888888899999999999999988888653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=2.1e-09 Score=110.46 Aligned_cols=252 Identities=10% Similarity=-0.109 Sum_probs=185.1
Q ss_pred HHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHH----HHHHH-------HhhhhhHHHHHHHHHHHHHhCCCccch
Q 003273 429 VMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLS----CALMA-------CARLAALRFGRQIHAYVLRNQYEMLIP 497 (834)
Q Consensus 429 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~----~ll~a-------~~~~~~~~~a~~~~~~~~~~~~~~~~~ 497 (834)
.++......+..++|++++.+.++ ..|+..+.- .++.. ....+.++.+..++..+.+... .+.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~----~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p--k~~ 107 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSY 107 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHhcccccHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC--CcH
Confidence 333333444556899999999987 778876542 12222 3345668888888888888664 566
Q ss_pred hHHhHHHHHHHhcC--CHHHHHHHHhhcC---CCChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 003273 498 FVANCLIDMYSRSG--DIDTARVVFDNLK---QRNVVSWTSL-MTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLL 570 (834)
Q Consensus 498 ~~~~~li~~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 570 (834)
..+..+...+...+ ++++|...++++. .++...|... ...+...|..++|+..++++++ ..|+ ...|..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~ 185 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRS 185 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHH
Confidence 67777777776665 4889999999876 3456666544 4567778999999999999988 6675 77788888
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHH
Q 003273 571 YACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM--PMEPTPIIWVALLNGCRIHANVE 648 (834)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~ 648 (834)
.++...|++++|...+....+ +.|. .......+...+..++|...+.+. ...++...+..+...+...|+.+
T Consensus 186 ~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 259 (334)
T d1dcea1 186 CLLPQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSEL 259 (334)
T ss_dssp HHHHHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHH
Confidence 899999988887766654432 1122 122334455667777777776654 22244556777777888889999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 649 LGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 649 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.|...+.++++.+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998774
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=5.8e-07 Score=90.32 Aligned_cols=182 Identities=10% Similarity=0.065 Sum_probs=144.5
Q ss_pred hcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHH
Q 003273 509 RSGDIDTARVVFDNLK----QRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD--GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 509 k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a 582 (834)
..+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++++ ..|. ...|...+..+.+.|.++.|
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHH
Confidence 3445678888888764 34566889899999999999999999999998 4554 45688999999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHH-hhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003273 583 LKYFDSMSKEFGISARAEHYACIVDLL-GRANRLDEAVELIEGMP--MEPTPIIWVALLNGCRIHANVELGELAANRLLE 659 (834)
Q Consensus 583 ~~~~~~m~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 659 (834)
.++|+.+.+. .+.+...|....... ...|+.+.|..+|+.+- .+.+...|...+......|+.+.|..+++++++
T Consensus 154 r~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 154 RMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999998753 233444555555443 34689999999999872 224577999999999999999999999999999
Q ss_pred cCCCCCc----hHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 660 LESEKDG----SYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 660 ~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
..|.++. .|......-...|+.+.+..+.+++.+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8776543 5677777777889999999999988764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=7.6e-07 Score=82.11 Aligned_cols=140 Identities=9% Similarity=-0.037 Sum_probs=102.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 003273 504 IDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQG 582 (834)
Q Consensus 504 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 582 (834)
...+...|++++|.+.|+++..++...|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 55677889999999999999889999999999999999999999999999999 6786 77899999999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003273 583 LKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPT-PIIWVALLNGCRIHANVELGELAANRLLELE 661 (834)
Q Consensus 583 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 661 (834)
...|++..+. .+++... .|...| ...+.+ ..++..+..++...|+++.|.+.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999887642 1111100 000000 001111 2344556666777777777777777777777
Q ss_pred CCC
Q 003273 662 SEK 664 (834)
Q Consensus 662 p~~ 664 (834)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=4.9e-07 Score=84.38 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 598 RAEHYACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 598 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
+...+...+..|.+.|++++|++.|+++ ... .++..|..+..+|...|+++.|+..++++++++|+++.+|..++.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3333344444444444444444444433 111 23445555555555555555555555555555555555555555555
Q ss_pred HhcCCchhHHHHHHHHH
Q 003273 676 ANAGRWKDVARIRSLMK 692 (834)
Q Consensus 676 ~~~g~~~~a~~~~~~m~ 692 (834)
...|++++|...++++.
T Consensus 83 ~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 83 LEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.2e-06 Score=73.22 Aligned_cols=90 Identities=7% Similarity=0.075 Sum_probs=67.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 682 (834)
-...+.+.|++++|+..|++. ... .+...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 355566777777777777765 222 346678888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhc
Q 003273 683 DVARIRSLMKHT 694 (834)
Q Consensus 683 ~a~~~~~~m~~~ 694 (834)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888877653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.9e-06 Score=71.94 Aligned_cols=105 Identities=12% Similarity=-0.012 Sum_probs=76.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcH
Q 003273 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANV 647 (834)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~ 647 (834)
...+...|++++|+..|+..++. -+.+...|..+..+|.+.|++++|++.+++. .. +.+...|..+..++...|+.
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44566667777777777666542 2234556666777777777777777777665 12 24577888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 648 ELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 648 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
++|+..++++++++|+++.++..+.++-+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999888888777643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=5.9e-06 Score=81.86 Aligned_cols=192 Identities=7% Similarity=-0.056 Sum_probs=132.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhH
Q 003273 500 ANCLIDMYSRSGDIDTARVVFDNLKQ-----RN----VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL---APD--GVT 565 (834)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t 565 (834)
|.....+|..+|++++|.+.|.++.+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 45567789999999999999987752 22 34788899999999999999999998765211 111 345
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHhHHhc---CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----H-
Q 003273 566 FLVLLYACSH-SGMVDQGLKYFDSMSKEF---GISAR-AEHYACIVDLLGRANRLDEAVELIEGMP----MEPT----P- 631 (834)
Q Consensus 566 ~~~ll~a~~~-~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~- 631 (834)
+..+...|.. .|++++|.+.++...+-+ +..+. ..++..+...|.+.|++++|.+.++++. ..+. .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6666767744 699999999999875422 21221 4567889999999999999999998761 1111 1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHHh--cCCchhHHHHHHHH
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGS-----YTLLSNIYAN--AGRWKDVARIRSLM 691 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~m 691 (834)
..+...+-.+...|+.+.|...++++.+++|..+.+ ...|+.+|.. .+++++|...++.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 123344445677899999999999999999864432 3445555554 34577887777544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=4.5e-06 Score=74.20 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=64.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 003273 605 IVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWK 682 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 682 (834)
....|.+.|++++|+..|++. ...| +...|..+...+...|+++.|...++++++++|++..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345566777777777777665 2223 46677777777777788888888888888888877777888888888888888
Q ss_pred hHHHHHHHHHhc
Q 003273 683 DVARIRSLMKHT 694 (834)
Q Consensus 683 ~a~~~~~~m~~~ 694 (834)
+|...++.....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 887777777653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.9e-06 Score=78.08 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=81.3
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
...+...|++++|++.|+++. +|++.+|..+...+...|+++.|+..|+++++++|+++.+|..++.+|...|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 456778999999999999875 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 003273 686 RIRSLMKHT 694 (834)
Q Consensus 686 ~~~~~m~~~ 694 (834)
+.+++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=1.1e-06 Score=72.77 Aligned_cols=88 Identities=16% Similarity=0.009 Sum_probs=77.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 003273 604 CIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRW 681 (834)
Q Consensus 604 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 681 (834)
.++..+.+.|++++|+..+++. ...| ++..|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566778888888888888876 2334 5778999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 003273 682 KDVARIRSLM 691 (834)
Q Consensus 682 ~~a~~~~~~m 691 (834)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=1.7e-05 Score=78.42 Aligned_cols=212 Identities=13% Similarity=-0.037 Sum_probs=138.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcC----CC-CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHhH
Q 003273 283 WNAMVTGYSRIGSFEDAFALFKKMRQEN----VK-LNVVTWSAVIAGYAQRGHGHEALDVFRQMQFC----GL-EPNVVT 352 (834)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~t 352 (834)
|......|...|++++|.+.|.+..+.. -. .-..+|+.+...|.+.|++++|++.+++..+. |- .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 5556788999999999999999876531 11 12357888899999999999999999987653 11 111234
Q ss_pred HHHHHHhhh-hhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCcc------
Q 003273 353 LVSLLSGCA-SVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVA------ 425 (834)
Q Consensus 353 ~~~ll~a~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~------ 425 (834)
+..+...+. ..|+++.|.+.+..+...... .+..+.-..++..+...|.+.|++++|...|+++....++..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~-~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQ-DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 444555553 468999999999888764221 111111244677789999999999999999998754443221
Q ss_pred --chHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 426 --TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 426 --~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
.+..++..+...|+++.|...|++..+ +.|+...- ........|
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~----~~~~~~~s------------------------------re~~~l~~l 244 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS----EDPNFADS------------------------------RESNFLKSL 244 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC----C---------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCccch------------------------------HHHHHHHHH
Confidence 133455567788999999999999876 44431100 112233455
Q ss_pred HHHHHh--cCCHHHHHHHHhhcCCCChh
Q 003273 504 IDMYSR--SGDIDTARVVFDNLKQRNVV 529 (834)
Q Consensus 504 i~~y~k--~g~~~~A~~~~~~~~~~~~~ 529 (834)
+.+|.. .+.+++|...|+++.+-|..
T Consensus 245 ~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 245 IDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 555554 34588888888888776653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=1.6e-06 Score=80.69 Aligned_cols=104 Identities=7% Similarity=-0.099 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 003273 563 GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNG 640 (834)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 640 (834)
...+......+...|++++|+..|+.+.+. -+.+...|..+..+|.+.|++++|++.|+++ ...|+ ...|..+..+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 333334444444444444444444444321 1122334444444444445555554444443 22332 4455555555
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 641 CRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
+...|+++.|...++++++++|++...+
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 6666666666666666666555444333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=7.5e-06 Score=72.64 Aligned_cols=116 Identities=4% Similarity=-0.062 Sum_probs=79.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcH
Q 003273 570 LYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANV 647 (834)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 647 (834)
...|.+.|++++|...|++..+. -+-+...|..+..+|...|++++|++.|+++ ...| +...|..+..++...|+.
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34455666666666666666532 1223555666666666666666666666655 2234 457888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCCchhHHHH
Q 003273 648 ELGELAANRLLELESEKDGSYTLLSNIYA--NAGRWKDVARI 687 (834)
Q Consensus 648 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 687 (834)
++|...++++++++|+++.++..+..+.. ..+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888877766643 34446666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4.5e-06 Score=69.87 Aligned_cols=106 Identities=17% Similarity=0.002 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 003273 568 VLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRL---DEAVELIEGM-PMEPTP---IIWVALLNG 640 (834)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~~ 640 (834)
.+++.+...+++++|.+.|+...+. -+.++.++..+..+|.+.++. ++|+++++++ ...|+. .+|..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4566677777777777777777642 223456677777777765544 4577777775 233433 367888889
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003273 641 CRIHANVELGELAANRLLELESEKDGSYTLLSNIY 675 (834)
Q Consensus 641 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 675 (834)
|...|+++.|++.++++++++|++..+...+..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 99999999999999999999999887766665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=2.2e-05 Score=70.31 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 003273 530 SWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLL 609 (834)
Q Consensus 530 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 609 (834)
.+......+.+.|++++|+..|++.++. -|....+ ...+. .....+ ....|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~-----------~~~~~-~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEA-QKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHH-HHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc-----------chHHH-hhhchh--------HHHHHHHHHHHH
Confidence 4455566777788888888888877763 2211000 00000 000011 123467788889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhH
Q 003273 610 GRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDV 684 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 684 (834)
.+.|++++|+..+++. ...| ++..|..+..++...|+++.|...++++++++|+|+.+...+..+....+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877 3344 6778999999999999999999999999999999999999999998777666544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=2e-05 Score=70.52 Aligned_cols=111 Identities=9% Similarity=-0.018 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003273 565 TFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIH 644 (834)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 644 (834)
.+......+...|++++|+..|...++.....+.... ++ ...... ....+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~--------------~~-~~~~~~----~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN--------------EE-AQKAQA----LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS--------------HH-HHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch--------------HH-Hhhhch----hHHHHHHHHHHHHHhh
Confidence 3444555677777777777777766543222111100 00 000000 0123567777888999
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|+++.|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=5.9e-06 Score=69.10 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhcCCCC--CchHHHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRI---HANVELGELAANRLLELESEK--DGSYTLLSNI 674 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 674 (834)
...+++.+...+++++|++.|++. ... .++.++..+..++.. .++.+.|+..++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356788888999999999999987 233 457788888888865 446667999999999998754 3478999999
Q ss_pred HHhcCCchhHHHHHHHHHhc
Q 003273 675 YANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 675 ~~~~g~~~~a~~~~~~m~~~ 694 (834)
|...|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.02 E-value=3.8e-05 Score=67.28 Aligned_cols=63 Identities=8% Similarity=-0.048 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+|..+..++...|+++.|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888899999999999999999999999999999999999999999999999888764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.01 E-value=4.6e-05 Score=67.99 Aligned_cols=94 Identities=10% Similarity=-0.001 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 003273 600 EHYACIVDLLGRANRLDEAVELIEGM-PM-EPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYAN 677 (834)
Q Consensus 600 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 677 (834)
..|..+..+|.+.|++++|+..+++. .. +.+...|..+..++...|+++.|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34667888899999999999999877 22 34577899999999999999999999999999999999999999988877
Q ss_pred cCCch-hHHHHHHHHHh
Q 003273 678 AGRWK-DVARIRSLMKH 693 (834)
Q Consensus 678 ~g~~~-~a~~~~~~m~~ 693 (834)
.+... ...+++..|-+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 77654 35556555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=4.8e-05 Score=64.27 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM-PME-PTPIIWVALLNGCRIHANVELGELAANRLLELESEKDG-------SYTLLS 672 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 672 (834)
+-.+++.|.+.|++++|++.|++. ... .+...|..+..++...|+++.|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677788888888888888766 223 35778888999999999999999999999999988765 556677
Q ss_pred HHHHhcCCchhHHHHHHHHHh
Q 003273 673 NIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 673 ~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.++...+++++|.+.+.+...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788888899999999987654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.88 E-value=0.00097 Score=64.17 Aligned_cols=223 Identities=12% Similarity=-0.022 Sum_probs=135.8
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHH
Q 003273 424 VATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCALMACARLAALRFGRQIHAYVLRNQYEMLIPFVANCL 503 (834)
Q Consensus 424 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 503 (834)
+..+..+...+.+.+++++|++.|++..+ .| +......|
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~--~g---------------------------------------~~~A~~~L 40 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LK---------------------------------------ENSGCFNL 40 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CC---------------------------------------CHHHHHHH
Confidence 34455566666677777777777777765 22 11112223
Q ss_pred HHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003273 504 IDMYSR----SGDIDTARVVFDNLKQ-RNVVSWTSLMTGYGM----HGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACS 574 (834)
Q Consensus 504 i~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 574 (834)
..+|.. ..+...|...+..... .+...+..+...+.. .++.+.|...+++....|..+. ...+...+.
T Consensus 41 g~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~ 117 (265)
T d1ouva_ 41 GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYH 117 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHH
T ss_pred HHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhccccc
Confidence 333333 3455556555555442 234444444444433 3567778888887777543221 222222222
Q ss_pred ----hcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 003273 575 ----HSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLDEAVELIEGMPMEPTPIIWVALLNGCRI--- 643 (834)
Q Consensus 575 ----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~--- 643 (834)
.......+...+..... ..+...+..|...|.. ..+...+..+++......+...+..|...+..
T Consensus 118 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~ 193 (265)
T d1ouva_ 118 DGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 193 (265)
T ss_dssp HCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred CCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcc
Confidence 24456666666665543 2345566667776664 45667777777766433466666666655554
Q ss_pred -cCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhcCC
Q 003273 644 -HANVELGELAANRLLELESEKDGSYTLLSNIYAN----AGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 644 -~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 696 (834)
..|.+.|+..++++.+.+ ++.++..|+.+|.. ..+.++|.+++++..+.|-
T Consensus 194 ~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 194 ATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 568999999999998885 47788999999986 4489999999999988764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=4.2e-05 Score=68.41 Aligned_cols=131 Identities=9% Similarity=-0.000 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLL 609 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 609 (834)
+......+...|++++|+..|+++++. .+. ........+. ..+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADG----------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence 445566677788888888888877651 110 0000111110 01122 345677888899
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchh
Q 003273 610 GRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKD 683 (834)
Q Consensus 610 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 683 (834)
.+.|++++|+..++++ ...| ++..|..+..++...|+++.|+..++++++++|+++.++..|..++.......+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4445 467899999999999999999999999999999999988888887765544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=5.2e-05 Score=67.78 Aligned_cols=65 Identities=3% Similarity=-0.116 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34577888888999999999999999999999999999999999999999999999999999874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.82 E-value=0.00014 Score=64.67 Aligned_cols=63 Identities=6% Similarity=-0.044 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
.+|..+..++...|+++.|+..++++++++|++..+|..++.+|...|++++|...++.+.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356667777899999999999999999999999999999999999999999999999998763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.81 E-value=0.00016 Score=63.12 Aligned_cols=128 Identities=5% Similarity=-0.110 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003273 528 VVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVD 607 (834)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 607 (834)
...+......+.+.|++.+|+..|++.++. .|..... .-........ ......|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~--------~~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKK--------NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhh--------hHHHHHHhhHHH
Confidence 345667777888889999999999888872 2211100 0000000000 012346778889
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003273 608 LLGRANRLDEAVELIEGM-PMEP-TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYA 676 (834)
Q Consensus 608 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 676 (834)
+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|...++++++++|+|+.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999886 3344 57799999999999999999999999999999999888777766544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.76 E-value=7.7e-05 Score=61.15 Aligned_cols=85 Identities=8% Similarity=-0.007 Sum_probs=43.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhh
Q 003273 534 LMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISA-RAEHYACIVDLLGR 611 (834)
Q Consensus 534 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~ 611 (834)
+...+.+.|++++|+..|++.+. ..|+ ...|..+..++.+.|++++|...|+...+ +.| +...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 34444555555555555555555 3443 45555555555555555555555555542 222 24444445555555
Q ss_pred cCCHHHHHHHHH
Q 003273 612 ANRLDEAVELIE 623 (834)
Q Consensus 612 ~g~~~~A~~~~~ 623 (834)
.|++++|.+.++
T Consensus 97 ~g~~~~A~~~l~ 108 (112)
T d1hxia_ 97 EHNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 555555555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=7.5e-06 Score=87.89 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 634 WVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 634 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
+..|...++..|+++.|+..|++++++.|++..+|..|+.+|...|+..+|...+.+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444445555555555555544444555555554445544444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.70 E-value=0.011 Score=57.88 Aligned_cols=278 Identities=12% Similarity=0.062 Sum_probs=154.8
Q ss_pred chHHHHHHhhCCCchhHHHHhcccCCCCcchhhHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHHccCC
Q 003273 70 PSHLIAAYVSHNAPSPALSLLQRISPSPFSVFWWNALIRRAVRLRLPDNAFRLFLQMMRRGWHPDEYTFPFVLKACGELP 149 (834)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 149 (834)
...+..-|-+.|.++.|..++..+. .|..++..+.+.++++.|.+++.+. -+..+|..+..+|....
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~-------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVS-------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ------------CTTTHHHHHHHTT-------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC-------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 3445666678888888888887544 3566778888888888888877644 14457777777777665
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 003273 150 SSRCGSSVHAVICSSGFDSNVFVCNALMAMYARCDTLSYARQLFDEMFQPGICDIVSWNTIVAAYAQSGDAEGGLMLFAR 229 (834)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 229 (834)
....+ .+...+...++.....++..|-..|.+++...+++.......++...++.++..|++.+ .++.++.++.
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 44332 22233334555566788899999999999999999765544447777888999888865 3445555444
Q ss_pred hhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhc
Q 003273 230 MTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQE 309 (834)
Q Consensus 230 m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 309 (834)
.. +.+....++..|. +.+.+ .-++-.|.+.|++++|..+.-. +
T Consensus 158 ~s-------~~y~~~k~~~~c~---------~~~l~------------------~elv~Ly~~~~~~~~A~~~~i~---~ 200 (336)
T d1b89a_ 158 FW-------SRVNIPKVLRAAE---------QAHLW------------------AELVFLYDKYEEYDNAIITMMN---H 200 (336)
T ss_dssp HS-------TTSCHHHHHHHHH---------TTTCH------------------HHHHHHHHHTTCHHHHHHHHHH---S
T ss_pred cc-------ccCCHHHHHHHHH---------HcCCh------------------HHHHHHHHhcCCHHHHHHHHHH---c
Confidence 32 2234445556665 23333 3344445555555555444311 1
Q ss_pred CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-----------HHHHHHHhhhhhchhhhhhHHHHHHHH
Q 003273 310 NVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVV-----------TLVSLLSGCASVGALLLGKETHCYTIK 378 (834)
Q Consensus 310 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-----------t~~~ll~a~~~~~~~~~a~~~~~~~~~ 378 (834)
.+++......+..+.+..+++...++.....+. .|+.. .-..++.-+.+.+++...+..+..+..
T Consensus 201 --~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 201 --PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp --TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred --chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 112333333444444444444444433333321 12110 012233333445566666666665443
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHHhCCChHHHHHHHHh
Q 003273 379 RVLSVDGSHPDDLMVINALIDMYAKCKSVDVARVMFDA 416 (834)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 416 (834)
. + +..+.++|.+.|...++++.-++..+.
T Consensus 277 ~------n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 277 H------N---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp T------C---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c------C---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 2 2 346889999999999987665555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=2.5e-05 Score=67.73 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=75.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC----------CHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSG----------MVDQGLKYFDSMSKEFGISA-RAEHYACI 605 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g----------~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 605 (834)
|-+.+.+++|+..|++.++ +.|+ ...+..+..+|...+ .+++|+..|+.+.+ +.| +...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 3455667888888888887 5675 566666666665433 34555555555542 233 23445555
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHH
Q 003273 606 VDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVA 685 (834)
Q Consensus 606 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 685 (834)
..+|...|++. ++... ..++++.|.+.++++++++|++...+..|.... .|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence 55544433210 11111 112468899999999999999887777776654 555
Q ss_pred HHHHHHHhcCC
Q 003273 686 RIRSLMKHTGV 696 (834)
Q Consensus 686 ~~~~~m~~~~~ 696 (834)
+++..+.++|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 66666665553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.54 E-value=0.046 Score=53.31 Aligned_cols=284 Identities=13% Similarity=0.104 Sum_probs=154.1
Q ss_pred CCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCCeee
Q 003273 238 GDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAMVTGYSRIGSFEDAFALFKKMRQENVKLNVVT 317 (834)
Q Consensus 238 p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 317 (834)
||..-...+..-|. +.|.++.|..++..+. -|..++..|.+.++++.|.+++.+.. +..+
T Consensus 12 ~n~~d~~~i~~~c~---------~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~ 71 (336)
T d1b89a_ 12 PNNAHIQQVGDRCY---------DEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRT 71 (336)
T ss_dssp C-------------------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHH
T ss_pred CCcCCHHHHHHHHH---------HCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHH
Confidence 34444444445554 6777888888887554 36778888999999999999887653 6678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHhhhhhchhhhhhHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 003273 318 WSAVIAGYAQRGHGHEALDVFRQMQFCGLEPNVVTLVSLLSGCASVGALLLGKETHCYTIKRVLSVDGSHPDDLMVINAL 397 (834)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 397 (834)
|..+...+.+.....-| .+.......+......++..+-..|..+....++...+. ....+..+++-|
T Consensus 72 ~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~-------~~~~~~~~~~~L 139 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG-------LERAHMGMFTEL 139 (336)
T ss_dssp HHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------STTCCHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc-------CCccchHHHHHH
Confidence 99999988887665432 233334455666677888888888888887777776653 335577788999
Q ss_pred HHHHHhCCChHHHHHHHHhcCCC-C--------CCccchHHHHHHHHhcCChhHHHHHHHhhcccCCCCcCCcccHHHHH
Q 003273 398 IDMYAKCKSVDVARVMFDAIAPK-N--------RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTLSCAL 468 (834)
Q Consensus 398 i~~y~~~g~~~~A~~~f~~~~~~-~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll 468 (834)
+..|++.+. ++-.+.+...... + .....|..++.-|.+.|++++|+.+.-. -.++.......+
T Consensus 140 ~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-------~~~~~~~~~~f~ 211 (336)
T d1b89a_ 140 AILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-------HPTDAWKEGQFK 211 (336)
T ss_dssp HHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-------STTTTCCHHHHH
T ss_pred HHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-------cchhhhhHHHHH
Confidence 999999763 3444444433210 0 0112244555555555555555444322 122333333334
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 003273 469 MACARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAH 548 (834)
Q Consensus 469 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 548 (834)
..+.+..+.+..-++.....+ ..|...+.|+......-+..+. +.-+.+.++.....
T Consensus 212 e~~~k~~N~e~~~~~i~~yL~-----~~p~~i~~lL~~v~~~~d~~r~------------------V~~~~k~~~l~li~ 268 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYLE-----FKPLLLNDLLMVLSPRLDHTRA------------------VNYFSKVKQLPLVK 268 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHHH-----HCGGGHHHHHHHHGGGCCHHHH------------------HHHHHHTTCTTTTH
T ss_pred HHHHccCChHHHHHHHHHHHH-----cCHHHHHHHHHHhccCCCHHHH------------------HHHHHhcCCcHHHH
Confidence 444444444433333333332 1122223333333333333333 33344455555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003273 549 WAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFD 587 (834)
Q Consensus 549 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (834)
..++.....| +....+++...|...++++.-.+..+
T Consensus 269 p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 269 PYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 5555544433 34567777778888888665544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00036 Score=58.61 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hHHHHH
Q 003273 531 WTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-----AEHYAC 604 (834)
Q Consensus 531 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ 604 (834)
+..+...|.+.|++++|+..|++.++ +.|+ ...+..+..+|.+.|++++|+..++.+++...-.+. ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44456667777777777777777777 4554 566667777777777777777777766532100111 134555
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 003273 605 IVDLLGRANRLDEAVELIEGM 625 (834)
Q Consensus 605 l~~~~~~~g~~~~A~~~~~~~ 625 (834)
+.+.+...+++++|++.+++.
T Consensus 85 lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 555666666666666666543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.00028 Score=63.10 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 003273 567 LVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGMPMEPTPIIWVALLNGCRIHAN 646 (834)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 646 (834)
..........|++++|.+.|.....- .+.... . -+...........-++. .....|..+...+...|+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l----~-~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE---WRGPVL----D-DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTT----G-GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh---Cccccc----c-cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 34445678889999999999888743 222100 0 00000011111111111 124578888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 003273 647 VELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKH 693 (834)
Q Consensus 647 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 693 (834)
.+.|...++++++++|.+...|..|+.+|...|++++|.+.|+..++
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.41 E-value=0.0005 Score=61.46 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCCccchHhHHHHhhccCCchhhhhcCcHHHHHHHHHhcCCCChhHHHHH
Q 003273 207 WNTIVAAYAQSGDAEGGLMLFARMTGDVKVQGDGVSLVNALSACASLGTWSRGKQCGMMEEAKKVFERMKVKDVVSWNAM 286 (834)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~~l~a~~~~~~~~~~~~~g~~~~A~~~~~~~~~~d~~~~~~l 286 (834)
...........|++++|.+.|.+.... .+...-- .+ ..+.+ +...-..+.......+..+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~-----~~----------~~~~w--~~~~r~~l~~~~~~a~~~l 73 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE---WRGPVLD-----DL----------RDFQF--VEPFATALVEDKVLAHTAK 73 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG-----GG----------TTSTT--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc-----cC----------cchHH--HHHHHHHHHHHHHHHHHHH
Confidence 334456677888888888888887743 2211100 00 00000 0000011112245678889
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhH
Q 003273 287 VTGYSRIGSFEDAFALFKKMRQENVKLNVVTWSAVIAGYAQRGHGHEALDVFRQMQF-----CGLEPNVVT 352 (834)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t 352 (834)
...+.+.|++++|+..++++....+. +...|..++.+|.+.|+..+|++.|+++.+ .|+.|...|
T Consensus 74 a~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999999999999999998776 889999999999999999999999999754 599998765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=1.4e-05 Score=85.61 Aligned_cols=166 Identities=11% Similarity=-0.010 Sum_probs=92.0
Q ss_pred hhHHHHHHHhhcccCCCCcCCcccHHHHHHHH--hhhhhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHH
Q 003273 440 ANDALALFPQMFQQDKLVKPNAFTLSCALMAC--ARLAALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTAR 517 (834)
Q Consensus 440 ~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 517 (834)
+..+++.+++..+ ..-.++..-....+..+ ...+.++.+.+.+.... ++.+.+...+..+...+.+.|+.++|.
T Consensus 65 y~~~ie~~r~~~k--~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 65 FKNQITTLQGQAK--NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp THHHHHHHHHHHS--CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHhcc--cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHH
Confidence 4566777777665 33334433332222222 12233333333333222 233356667778888899999999998
Q ss_pred HHHhhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 003273 518 VVFDNLKQRNV-VSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGI 595 (834)
Q Consensus 518 ~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 595 (834)
..+.....++. .++..+...+...|++++|+..|++..+ +.|+ ..+|+.|...+...|+..+|...|.+... --
T Consensus 141 ~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~ 216 (497)
T d1ya0a1 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VK 216 (497)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CC
Confidence 88776654433 4677788889999999999999999999 6887 78899999999999999999999998873 34
Q ss_pred CCChHHHHHHHHHHhhcC
Q 003273 596 SARAEHYACIVDLLGRAN 613 (834)
Q Consensus 596 ~p~~~~~~~l~~~~~~~g 613 (834)
.|-...+..|..+|.+..
T Consensus 217 ~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp BCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 566778888888876544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.35 E-value=0.00036 Score=61.04 Aligned_cols=64 Identities=8% Similarity=-0.049 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEK-----------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
...|+.+..++...|+++.|...+++.+++.|+. ..+|..++.+|...|++++|...+++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777888888888888888877764321 236788999999999999999999998754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00038 Score=54.74 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003273 602 YACIVDLLGRANRLDEAVELIEGM----P----MEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLS 672 (834)
Q Consensus 602 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 672 (834)
+-.++..+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|+.++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334555555666666665555543 1 1123 457888999999999999999999999999999998888775
Q ss_pred HH
Q 003273 673 NI 674 (834)
Q Consensus 673 ~~ 674 (834)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.27 E-value=0.00011 Score=63.37 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC-----------chhHHHHHHHHHhc
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYANAGR-----------WKDVARIRSLMKHT 694 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~ 694 (834)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.+++..+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 456789999999999999999999999999988764 57788888877653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.26 E-value=0.0066 Score=57.95 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCCCCCCccchHHHHHHHHh----cCChhHHHHHHHhhcc
Q 003273 391 LMVINALIDMYAKCKSVDVARVMFDAIAPKNRDVATWTVMIGSYSQ----NGGANDALALFPQMFQ 452 (834)
Q Consensus 391 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 452 (834)
+..+..|...+.+.+++++|.+.|++..+. .+..++..|...|.. ..+...|...+.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 445677788888999999999999998643 366666667666665 4567777777777655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.09 E-value=0.00074 Score=64.51 Aligned_cols=124 Identities=13% Similarity=-0.040 Sum_probs=81.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHH
Q 003273 539 GMHGLGDKAHWAFDQMRKEGLAPD-GVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISAR-AEHYACIVDLLGRANRLD 616 (834)
Q Consensus 539 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 616 (834)
.+.|++++|+..+++.++ ..|+ ...+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 356888888888888888 5675 67788888888888888888888888763 3454 334444555555555555
Q ss_pred HHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCch
Q 003273 617 EAVELIEGM--PMEPT-PIIWVALLNGCRIHANVELGELAANRLLELESEKDGS 667 (834)
Q Consensus 617 ~A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 667 (834)
++..-.... ...|+ ...+......+...|+.+.|...++++.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 443332221 11232 2233344455777888999999999998888876654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.01 E-value=0.0033 Score=54.51 Aligned_cols=33 Identities=6% Similarity=-0.109 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003273 633 IWVALLNGCRIHANVELGELAANRLLELESEKD 665 (834)
Q Consensus 633 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 665 (834)
.+..+..++...|+.++|...+++++++.|+..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 466777888888999999999999888866543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.0027 Score=49.54 Aligned_cols=64 Identities=14% Similarity=-0.034 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 631 PIIWVALLNGCRIHANVELGELAANRLLELESEK-------DGSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 631 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
+..+-.+...+...|+.+.|+..+++++++.|.+ ..+|..|+.+|.+.|++++|...++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3345577888999999999999999999986654 347899999999999999999999999874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.56 E-value=0.0012 Score=63.08 Aligned_cols=121 Identities=13% Similarity=0.041 Sum_probs=87.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCcHHHH
Q 003273 573 CSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDEAVELIEGM-PMEPT-PIIWVALLNGCRIHANVELG 650 (834)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 650 (834)
....|++++|+..+++.++ .-+-+...+..+..+|++.|++++|.+.++.. ...|+ ...+..+...+...+..+.+
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999885 34456789999999999999999999999987 34455 44565555555544443333
Q ss_pred HHHHHHH-HhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcC
Q 003273 651 ELAANRL-LELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTG 695 (834)
Q Consensus 651 ~~~~~~~-~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 695 (834)
....... ...+|++...+...+.++...|++++|.+.+..+.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2222221 11245455666778889999999999999999987653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.02 E-value=0.24 Score=38.91 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=100.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 003273 538 YGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGRANRLDE 617 (834)
Q Consensus 538 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 617 (834)
+...|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34568888888888887762 334456666655555566666677777665544433 3555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhcCCc
Q 003273 618 AVELIEGMPMEPTPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLMKHTGVK 697 (834)
Q Consensus 618 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 697 (834)
....+-.+. .+.....-.+....++|.-+.-.+++..+++-+.-++.....++++|.+.|...++-++..+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555554443 234455666778888999999999999988876557899999999999999999999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=4.8 Score=40.43 Aligned_cols=261 Identities=10% Similarity=-0.014 Sum_probs=112.5
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCC-CccchHHHHHHHHhcCChhHHHHHHHhhcccCCC-CcCCcccHHHHHHHHhhh
Q 003273 397 LIDMYAKCKSVDVARVMFDAIAPKNR-DVATWTVMIGSYSQNGGANDALALFPQMFQQDKL-VKPNAFTLSCALMACARL 474 (834)
Q Consensus 397 li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g-~~p~~~t~~~ll~a~~~~ 474 (834)
.+..+.+.++.+.....|.. .| +...-.....+....|+.++|...+..... .| ..|+.
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~--~~~~~p~~------------- 138 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL--TGKSQPNA------------- 138 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--CSSCCCTH-------------
T ss_pred HHHHHHhccCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCchH-------------
Confidence 34455666666554443321 22 333333455666677888888777776665 22 23321
Q ss_pred hhHHHHHHHHHHHHHhCCCccchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003273 475 AALRFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM 554 (834)
Q Consensus 475 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 554 (834)
...++....+.|. .++...-.-+......|+...|..+...+...........+.....-. .+....
T Consensus 139 -----c~~l~~~~~~~~~--lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~---~~~~~~--- 205 (450)
T d1qsaa1 139 -----CDKLFSVWRASGK--QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFA--- 205 (450)
T ss_dssp -----HHHHHHHHHHTTC--SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHH---
T ss_pred -----HHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChH---hHHHHH---
Confidence 1223333333333 333333444555555677777777766655333333333333322111 111111
Q ss_pred HHcCCCCChhHHHHHHHHHHh--cCCHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC
Q 003273 555 RKEGLAPDGVTFLVLLYACSH--SGMVDQGLKYFDSMSKEFGISARAE--HYACIVDLLGRANRLDEAVELIEGMP-MEP 629 (834)
Q Consensus 555 ~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 629 (834)
.. ..++......+..+..+ ..+.+.+..++..........++.. ....+...+...+..+.|...+.... ...
T Consensus 206 ~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 283 (450)
T d1qsaa1 206 RT--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ 283 (450)
T ss_dssp HH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC
T ss_pred hc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc
Confidence 11 11222222222222222 1345555555555544333322211 11112222233444555555444331 112
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 003273 630 TPIIWVALLNGCRIHANVELGELAANRLLELESEKDGSYTLLSNIYANAGRWKDVARIRSLM 691 (834)
Q Consensus 630 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 691 (834)
+.....-++......++...+...+..+-.-....+....-++.++...|+-++|...+...
T Consensus 284 ~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~ 345 (450)
T d1qsaa1 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (450)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 22222222223334455555555544433222223344455666666666666666665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.70 E-value=0.19 Score=40.13 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 003273 629 PTPIIWVALLNGCRIH---ANVELGELAANRLLELESEKD-GSYTLLSNIYANAGRWKDVARIRSLMKHT 694 (834)
Q Consensus 629 p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 694 (834)
|..-+.-...+++.+. .+.+.|+.+++.+++.+|.+. ..+..|+-+|.+.|++++|++.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3444444555554433 345677777777777776553 46677777777777777777777777653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.43 E-value=0.54 Score=38.37 Aligned_cols=50 Identities=8% Similarity=-0.006 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhcCC
Q 003273 645 ANVELGELAANRLLELESEKDGSYTLLSNIYAN----AGRWKDVARIRSLMKHTGV 696 (834)
Q Consensus 645 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 696 (834)
.|.+.|.+.++++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 35667777777776654 35667777777765 3467778888877776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=89.65 E-value=2.2 Score=34.42 Aligned_cols=111 Identities=11% Similarity=-0.060 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHH
Q 003273 543 LGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSMSKEFGISARAEHYACIVDLLGR----ANRLDEA 618 (834)
Q Consensus 543 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 618 (834)
++++|+..|++..+.|. | .....|. .....+.++|.++++...+. | ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 45667777777666552 1 2222222 23345667777777766532 3 33444445555543 3467777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCC
Q 003273 619 VELIEGMPMEPTPIIWVALLNGCRI----HANVELGELAANRLLELES 662 (834)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 662 (834)
.++|++.-..-++.....|...|.. ..|.++|...++++.++..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8777776323344444455444443 3478888888888777654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.84 E-value=4.3 Score=31.73 Aligned_cols=83 Identities=10% Similarity=-0.037 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003273 510 SGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLVLLYACSHSGMVDQGLKYFDSM 589 (834)
Q Consensus 510 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (834)
|+++......|-.+- .+....+.-+....++|+-+.-.++++++.+. -+|++.....+..||.+.|...++-+++.+.
T Consensus 69 C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 69 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444333333332 23334445566667777777777777775553 4666666777777777777777777777766
Q ss_pred HHhcCC
Q 003273 590 SKEFGI 595 (834)
Q Consensus 590 ~~~~~~ 595 (834)
-++ |+
T Consensus 147 Ce~-G~ 151 (161)
T d1wy6a1 147 CKK-GE 151 (161)
T ss_dssp HHT-TC
T ss_pred HHH-hH
Confidence 543 44
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.09 E-value=1.9 Score=34.05 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCchH
Q 003273 632 IIWVALLNGCRIHANVELGELAANRLLELESEKDGSY 668 (834)
Q Consensus 632 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 668 (834)
..|-.|.-+|.+.|+++.|.+.++++++++|++..+.
T Consensus 74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 4666777778889999999999999999999876543
|