Citrus Sinensis ID: 003403

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820---
Protein Sequence
MAAITRADSTTKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISSTEDVPASFFFYCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATYPK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHcHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccHHHHccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHEEcccccccHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHHcHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
maaitradSTTKALWRRRLGSALRTALACSIVgfttlyspehlrhmpafpafsYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILClwlvgpdrfTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLlpyprlayhevKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDkqegmlwerpqirflkpnykdpreklqeleipirgmelaltscpsfpvgmidEDLRDVLQSLKAEIGLKLEQAKcyasfdattapetqknckdeslwslkaisstedvpaSFFFYCIKLLqdglpvapnaefvvnetrethtegssesqnqnkfkckLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMynkengywSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLlqksvnfrflpllpwIIFSSFLRHSRMYEEAGAISAVIGALLILgrknygtpsEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFAdqkgkatptALRDKQKRLKSHINELDKFIAeaemepnfwflpfhgscYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVlaperqnrnishdvesgrlpnedvprtlspdeEEIEEILSSFLQHSKEVAnsingydgeekhLSQTVLVLNGLGFCISSLMKETTKIEKEIKELIKwenptrniNLYEISCKLNATYPK
Flexible Loop (DISEMBL)
maaitradsttkalwrrRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLsikdkqegmlwerpqirflkpnykdpreKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFdattapetqknckDESLWSLKAISSTEDVPASFFFYCIKLLQDGLPVAPNAEFVVNETREthtegssesqnqnkFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFAdqkgkatptalrdkqkrLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAvlaperqnrnishdvesgrlpnedvprtlSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKElikwenptrninlyeiscklnatypk
Low Complexity Region (SEG)
MAAITRADSTTKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISSTEDVPASFFFYCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWIssslfllpsleslVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQParaatlakaqlaqslqalqDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDeeeieeiLSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMkettkiekeikelikweNPTRNINLYEISCKLNATYPK
Disordered region (IsUnstruct)
***********KALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYK****KLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTA******CKDESLWSLKAISSTEDVPASFFFYCIKLLQDGLPVAPNAEFVV*******************FKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQ******************HINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLA**************************************************INGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNA****
Disordered Region (DISOPRED)
**************WRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKL*********************************STEDVPASFFFYCIKLLQDGLPVAP******************************KWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLF****************KRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQL*********Q*QEPINDDLELFKEKVGHSLKCF************************************RTLSPDEEEIEEILSSFLQH***************KHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATYP*
Disordered Region (DISEMBL)
**********TKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISSTEDVPASFFFYCIKLLQDGLPVAPNAEFVVNE****************KFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATYPK
Disordered Region (DISPRO)
***********KALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISSTEDVPASFFFYCIKLLQDGLPVA***********************QNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATYPK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAITRADSTTKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISSTEDVPASFFFYCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTAxxxxxxxxxxxxxxxxxxxxxAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATYPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	823
255573635	819	hypothetical protein RCOM_1248440 [Ricin	0.986	0.991	0.594	0.0
225440318	823	PREDICTED: uncharacterized protein LOC10	0.990	0.990	0.575	0.0
357510403	813	p-hydroxybenzoic acid efflux pump subuni	0.976	0.988	0.521	0.0
255581111	805	conserved hypothetical protein [Ricinus	0.959	0.981	0.515	0.0
224104475	807	predicted protein [Populus trichocarpa]	0.972	0.991	0.508	0.0
225435010	817	PREDICTED: uncharacterized protein LOC10	0.967	0.974	0.482	0.0
147843231	801	hypothetical protein VITISV_019389 [Viti	0.964	0.991	0.481	0.0
297746109	783	unnamed protein product [Vitis vinifera]	0.944	0.992	0.476	0.0
30684006	796	uncharacterized protein [Arabidopsis tha	0.942	0.974	0.450	0.0
3927826	794	hypothetical protein [Arabidopsis thalia	0.942	0.977	0.450	0.0

>gi|255573635|ref|XP_002527740.1| hypothetical protein RCOM_1248440 [Ricinus communis] gi|223532881|gb|EEF34653.1| hypothetical protein RCOM_1248440 [Ricinus communis]

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/823 (59%), Positives = 614/823 (74%), Gaps = 11/823 (1%)

Query: 5   TRADSTTKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDA 64
           T A   TK LW   LGSALRT +AC+IVG TTLY P  L+H+ ++PAFSY+TTILI+SDA
Sbjct: 4   TTAKDPTKGLWLVHLGSALRTTVACTIVGGTTLYGPAPLKHLLSYPAFSYMTTILIVSDA 63

Query: 65  TLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALM 124
           TLG+TLRG  +ALYATIQ+MI SIL LW +GP RF + V AV V + +FVVALPEST LM
Sbjct: 64  TLGETLRGTLYALYATIQVMILSILPLWAIGPARFNSGVGAVAVAVTAFVVALPESTPLM 123

Query: 125 AKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVK 184
            KRIAFGQIVIV VG V+HGA+TGIVMHP+HVAS TALGA ASV+AML+P+P LAY+EV+
Sbjct: 124 TKRIAFGQIVIVYVGAVIHGAETGIVMHPLHVASCTALGAFASVLAMLVPFPHLAYNEVR 183

Query: 185 KSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWE 244
           K+ +LY ENASE LN F+ AF AQDN AA DSIS+AK L K G + +  IK+ Q GM WE
Sbjct: 184 KACRLYVENASERLNLFMDAFTAQDNRAATDSISQAKFLTKIGMRHIQRIKEVQGGMTWE 243

Query: 245 RPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGL 304
           +PQI FLK N  +  + LQ+LEI IRGM++A+TSCP+FPV MI+E+LR VL S+K +I L
Sbjct: 244 KPQILFLKHNCMELGQVLQDLEIMIRGMKIAVTSCPAFPVSMINEELRQVLISMKGKIRL 303

Query: 305 KLEQAKCYASFDATTAPET-QKNCKDESLWSLKAISST-EDVPASFFFYCIKLLQDGLPV 362
           KLEQAKC+  FDATTAPET ++   D+ LW+L+  ++T E++PA FFFYC++L++   PV
Sbjct: 304 KLEQAKCFVPFDATTAPETIEEEVSDKLLWTLETSATTQEELPAFFFFYCLELIRGESPV 363

Query: 363 APNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGL 422
           +P  E     T+E   E +++ +NQ     +  W    +  L S E   FA+KCSLSLG 
Sbjct: 364 SPCLEGSGRNTKEIEGEETNDVKNQANGSLRRIWNGLMMIRLGS-ERWNFAVKCSLSLGF 422

Query: 423 AVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSV 482
           AV+ GL++NK+NGYWSGLTIAISF T RQATF VAN+RAQ TAMGSVYG++ SF+ Q+  
Sbjct: 423 AVLFGLIFNKQNGYWSGLTIAISFVTGRQATFVVANSRAQATAMGSVYGILGSFIFQRFE 482

Query: 483 NFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASL 542
           + R + LLPWIIF+SFLRHSRMY +AG  SAVIGALLILGRKNY  P+EFAIARITEA +
Sbjct: 483 DLRVILLLPWIIFTSFLRHSRMYGQAGGTSAVIGALLILGRKNYSNPNEFAIARITEACI 542

Query: 543 GLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGK--ATPTALRDKQ 600
           GLICF++VEILFQPARAATLAK QLA SL+ALQ  I+DIV F  +K    + P  LR KQ
Sbjct: 543 GLICFVVVEILFQPARAATLAKTQLAWSLRALQGCIEDIVHFTRRKSMSLSVPPDLRGKQ 602

Query: 601 KRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQL 660
           K LKSHIN+++KFIAEA +EPNFWFLPF  + YE  L SL ++ DL+LF  Y  E LS++
Sbjct: 603 KVLKSHINQMEKFIAEATLEPNFWFLPFQEASYEKFLRSLRKIQDLILFAVYDVEILSRI 662

Query: 661 SERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVES 720
           SE+ G+ W++++E IN DL+ F+EKV  SL+C EEV+ IKSLA L  + Q R+  HDVES
Sbjct: 663 SEKLGLKWEELEEHINIDLDHFQEKVYSSLRCLEEVLCIKSLADLENKWQKRSTDHDVES 722

Query: 721 GRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFC 780
           G+  N+ +      DEE I EI+SSF+++SKEV   +N   GE+K  +Q  + L+GLGFC
Sbjct: 723 GKFQNKGL------DEEAILEIVSSFIKNSKEVVGKVNASKGEQKFKNQMKICLSGLGFC 776

Query: 781 ISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATYPK 823
           IS+LM E  +IEKE+KELI  ENPT  INL EI  K+   + K
Sbjct: 777 ISNLMGEIIEIEKEVKELIIMENPTMQINLNEILFKIKNLHTK 819

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440318|ref|XP_002269811.1| PREDICTED: uncharacterized protein LOC100266589 [Vitis vinifera]

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/825 (57%), Positives = 598/825 (72%), Gaps = 10/825 (1%)

Query: 1   MAAITRADSTTKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILI 60
           +AA+ R    T A+W  RLGSALRT LACSIVG TTL+ P  L+ + AFPAFSYVT +LI
Sbjct: 4   LAAVARGP--THAVWLCRLGSALRTVLACSIVGCTTLFGPPPLQRLLAFPAFSYVTAVLI 61

Query: 61  LSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPES 120
           +SDA LGDTLRGCWH L AT+Q+++P++L LWL+G  + +  +AA VV L  FVV LPE 
Sbjct: 62  VSDARLGDTLRGCWHVLCATVQVVVPAMLSLWLIGAGQLSTGLAAAVVALSVFVVGLPEW 121

Query: 121 TALMAKRIAFGQIVIVCVG-TVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLA 179
           T LMAKRIAFGQIVIV VG +++H    G  MH +HVASSTALGALASV+A+LLPYPRLA
Sbjct: 122 THLMAKRIAFGQIVIVYVGASIIHEEGAGAFMHLLHVASSTALGALASVLALLLPYPRLA 181

Query: 180 YHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQE 239
             EV +  K YAENASE LN F++AF A DN+AALDSIS+AK   + G K L +I+  ++
Sbjct: 182 SSEVNEIWKSYAENASERLNLFLEAFSAPDNSAALDSISQAKFFSERGDKLLQTIRLVED 241

Query: 240 GMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLK 299
           G+LWERP  RF KP+  DP ++LQ +EIP+RGME+AL+S  S P  + D++L D LQ + 
Sbjct: 242 GILWERPWTRFFKPHCFDPGDRLQAIEIPLRGMEIALSSFTSLPTAIADDELGDALQRVT 301

Query: 300 AEIGLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISSTEDVPASFFFY-CIKLLQD 358
               L+LEQAKC     +TT P +     D+ L +LK IS     P++FFF  C++LLQD
Sbjct: 302 LNTSLRLEQAKCSQPLASTTVPNSTGKFLDKPLQALKTISPAHAAPSAFFFLSCMQLLQD 361

Query: 359 GLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSL 418
           GLP   N E + N   +++TE S  S+    +  K+ W S ++ L      LVFA KCSL
Sbjct: 362 GLPSPQNPEPISNIGHKSNTEESRNSKKPVTYSFKMMWSSWNMSLASG--RLVFAFKCSL 419

Query: 419 SLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLL 478
           SLGLAV+ GLMYNKEN YWSGLTIAISFAT RQA F VANARAQGTAMGSV+G++  F+ 
Sbjct: 420 SLGLAVLFGLMYNKENAYWSGLTIAISFATGRQAMFTVANARAQGTAMGSVFGILGCFVF 479

Query: 479 QKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARIT 538
           Q S+  RFL LLPWIIF+SFL HSRMY +AG ISAVIGALLILGRKNYG+PSEFAIARIT
Sbjct: 480 QSSMVIRFLLLLPWIIFASFLMHSRMYGQAGGISAVIGALLILGRKNYGSPSEFAIARIT 539

Query: 539 EASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKA--TPTAL 596
           EA +GL CFI+VEIL +P RAATLAK QL+QSL  LQ+ IK++V+   Q         A+
Sbjct: 540 EAFIGLSCFIMVEILLRPRRAATLAKIQLSQSLATLQECIKEMVVCVGQTDSPHFVLPAM 599

Query: 597 RDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEF 656
           R+KQ +LK ++NEL+KFI EA++EPNFWFLPF G+CY  +  SLS++ DLLLFVA+  +F
Sbjct: 600 REKQNKLKMNVNELNKFIGEAKLEPNFWFLPFQGACYSKLWESLSKVEDLLLFVAHNIDF 659

Query: 657 LSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISH 716
           L Q S++F VSWK+IQ+ I+ DLELFKE V  SLK   ++  I+SL +L  E Q + I+H
Sbjct: 660 LLQASQKFEVSWKEIQKNIHSDLELFKETVASSLKYLVKITSIESLTLLEKELQKKIIAH 719

Query: 717 DVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNG 776
           D+E GR PN       S D+EEIE+IL+SFLQHS+E+ N I+    +E+  SQ VL L  
Sbjct: 720 DLELGRPPNAH--WVWSTDDEEIEKILASFLQHSEEIINEIHTNKDKEELKSQMVLSLGA 777

Query: 777 LGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
           LGFC+ SLM+ET KIEK I+EL++WENP+  I+  EISCK+NA Y
Sbjct: 778 LGFCMGSLMRETRKIEKGIQELVQWENPSSYIDFSEISCKINALY 822

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510403|ref|XP_003625490.1| p-hydroxybenzoic acid efflux pump subunit aaeB [Medicago truncatula] gi|87241041|gb|ABD32899.1| P-type trefoil, putative [Medicago truncatula] gi|355500505|gb|AES81708.1| p-hydroxybenzoic acid efflux pump subunit aaeB [Medicago truncatula]

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/829 (52%), Positives = 573/829 (69%), Gaps = 25/829 (3%)

Query: 1   MAAITRADSTTKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILI 60
           M+  T    T   L+R RLGSALRT LACSIVG T LYSP+ ++    FP+ SYVTTILI
Sbjct: 1   MSGTTTIAKTRTELFRTRLGSALRTTLACSIVGCTALYSPQPIKGYIKFPSISYVTTILI 60

Query: 61  -LSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPE 119
            LSD TLGD +RGCWH L ATIQ+MI S+L L ++ PD F+  +AA+ V   +FVVALP+
Sbjct: 61  VLSDGTLGDAVRGCWHVLLATIQVMIFSLLSLQVIRPDNFSNCMAALAVATGAFVVALPK 120

Query: 120 STALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLP--YPR 177
           ST L+ KRIA+GQ+VIV V TV+HGA+ G+  H IHVA STALGA+ASV+AMLLP  YPR
Sbjct: 121 STHLLTKRIAYGQLVIVYVSTVIHGAQEGVATHSIHVACSTALGAIASVLAMLLPLPYPR 180

Query: 178 LAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDK 237
            AY+E +K ++LY EN SE LN  ++A  A DN+ A+  I++AK L   GAK L SI   
Sbjct: 181 FAYNEARKFNQLYIENTSERLNCNIEAISASDNSTAVGFITKAKYLSTTGAKLLHSITTT 240

Query: 238 QEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQS 297
            +GM WERPQ         DP EKLQ+LEIPIRGM++AL+S  SFPVG+IDE+LR VL +
Sbjct: 241 LDGMHWERPQTLISNSCCIDPEEKLQDLEIPIRGMDIALSSGMSFPVGVIDEELRGVLLN 300

Query: 298 LKAEIGLKLEQ-AKCYASFDATTAPETQKNCKDESLWSLKAISSTEDVPASFFFYCIKLL 356
            + +I  KL+Q AKC+  FD TT  E +++     +++     + +++P SFF YC++LL
Sbjct: 301 CREQISQKLDQQAKCFVPFDTTTTQEMKQD-----IFNKNPSIAYKNLPTSFFLYCVQLL 355

Query: 357 QDGLPVAPNAEFVVNETRETHTEGSSESQ-NQNKFKCKLKWISSSLFLLPSLESLVFALK 415
           +D L ++   + V     +   + + +SQ + NK + +L      + L+PS +SL+FA K
Sbjct: 356 RDDLSISKKTDHV-----QKKAQKNDDSQCSSNKLRERL------MNLIPSNQSLIFAFK 404

Query: 416 CSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICS 475
            SLSLG AV  GL+Y+++N YWSGLTIAISF T RQ TF VANAR  GTAMGS+YG+ICS
Sbjct: 405 SSLSLGFAVFFGLIYDRDNAYWSGLTIAISFVTGRQPTFSVANARGTGTAMGSIYGIICS 464

Query: 476 FLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIA 535
           F+ Q+ V+ RFL L+PW+IFSSFLR SRMY E+GAIS VIGALLILGRKNY TP++F +A
Sbjct: 465 FIFQRFVDLRFLALIPWVIFSSFLRQSRMYGESGAISTVIGALLILGRKNYSTPTQFGVA 524

Query: 536 RITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPT- 594
           R+ EA++GL CFII+EI+  P+RAATLAK++L+Q+L+ LQD IK I +    +   +P+ 
Sbjct: 525 RMAEATIGLTCFIIMEIILSPSRAATLAKSELSQTLRTLQDCIKQIAMITPNERDTSPSS 584

Query: 595 --ALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAY 652
             ALR++QK+LKS +  L +F AEAEMEPNFWF+PFH +CY N+L SLSRM DLLLFVAY
Sbjct: 585 YQALREEQKKLKSLVCRLREFTAEAEMEPNFWFVPFHTTCYSNMLGSLSRMVDLLLFVAY 644

Query: 653 KTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNR 712
             E +SQL+++ GV W  IQ   N+++++FK +V   LK  EE+   KS+  L  E +++
Sbjct: 645 SMEHVSQLTQKDGVIWMDIQGQGNENVKIFKNRVAPILKSLEEITRTKSIKKLENELESK 704

Query: 713 NISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVL 772
           N+  D+ES    N D    L+ D EE++ I +SFLQH +E+A+       EE    Q + 
Sbjct: 705 NVPRDLESQEYLNADAFGILNRD-EEVDSITNSFLQHLEEIADKTLTNKDEEMLKIQILF 763

Query: 773 VLNGLGFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
             +  GFC  SLM+E TKIE EIKEL+ WENP    N  EI  K+NA +
Sbjct: 764 HYSCFGFCTGSLMREITKIEGEIKELLIWENPASQTNFKEIHSKINALH 812

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581111|ref|XP_002531370.1| conserved hypothetical protein [Ricinus communis] gi|223529030|gb|EEF31018.1| conserved hypothetical protein [Ricinus communis]

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/814 (51%), Positives = 558/814 (68%), Gaps = 24/814 (2%)

Query: 11  TKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTL 70
           T+A WR  L +A RT LAC+IVG  TLY P  L    AFPAFSYVT ILI++DAT GDTL
Sbjct: 12  TRAAWRWCLATAFRTGLACTIVGCLTLYGPSFLHQQIAFPAFSYVTVILIVTDATFGDTL 71

Query: 71  RGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAF 130
            GCW ALYAT Q + P++L LWL+GP RFT+   ++ V L +FVVALPE T L+AKRIA 
Sbjct: 72  HGCWLALYATFQSLGPAMLSLWLIGPARFTSGTISLAVALGAFVVALPEGTHLIAKRIAL 131

Query: 131 GQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLY 190
           GQIVIV V   ++G  T  +MHP+HVA+STA+G LA ++A+LLPYPRLA  EVK++ KL 
Sbjct: 132 GQIVIVYVIAFINGVHTQPIMHPLHVAASTAVGVLACMLALLLPYPRLACWEVKENCKLL 191

Query: 191 AENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRF 250
           AENAS+ L  +VKAF A+D   AL SIS+AK L  AG K L +IK  Q  M WER   +F
Sbjct: 192 AENASKRLKLYVKAFAAEDGALALSSISQAKLLASAGTKLLQNIKRYQGSMKWERLPFKF 251

Query: 251 LKPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAK 310
           L+  Y +P EKLQELEIP++GME+ALT   SFPV M + + ++ LQ L+  + L L+Q K
Sbjct: 252 LRHYYMNPGEKLQELEIPLKGMEMALTGISSFPVKMAEGETKESLQ-LEEHVSLTLKQIK 310

Query: 311 CYASFDATTAPETQKNCKDESLWSLKAI-SSTEDVPASFFFYCIKLLQ-DGLPVAPNAEF 368
                D+ T PE++     ESL +L+ I  +T+D+ + FF +C+KLL    LP       
Sbjct: 311 NCLPCDSLTVPESKAETIIESLQTLQIIPKATQDLSSLFFLFCMKLLHCKPLP------- 363

Query: 369 VVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGL 428
               + +  +EGS+ S  +N F   L  I ++  +    + L+ A KCSLSLGLA++ GL
Sbjct: 364 -KQTSSKQESEGSTTSSKKNSF---LDSIWTNWAMNVRSKRLMPAFKCSLSLGLAILFGL 419

Query: 429 MYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLP 488
           +Y+KENG+WSGL +AIS A +R+ATFKVAN +AQGT +G+VYGV+  F+ ++ +  RFL 
Sbjct: 420 LYSKENGFWSGLPVAISLAASREATFKVANVKAQGTVLGTVYGVLGCFVFERFMPIRFLS 479

Query: 489 LLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFI 548
           LLPW I +SFLR SRMY +AG ISA IGA+LILGRK +G PSEFAIARITE  +GL C I
Sbjct: 480 LLPWFILTSFLRRSRMYGQAGGISAAIGAVLILGRKGFGPPSEFAIARITETFIGLSCSI 539

Query: 549 IVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHIN 608
           +VE++ QP RAA+LAK QL +SL +L   I  I L A+         L + Q+RLK  ++
Sbjct: 540 MVELILQPTRAASLAKVQLTKSLGSLSACIGSISLEAN--------LLVENQRRLKLEVS 591

Query: 609 ELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSW 668
           EL KFI EAE+EPNFWFLPFH +CY  +  SLS+M DLLLF A+   FL Q S+++G SW
Sbjct: 592 ELKKFIGEAEVEPNFWFLPFHSACYGKLFGSLSKMVDLLLFSAHAVGFLQQESQKYGASW 651

Query: 669 KQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDV 728
           K+    ++ DLELFKE VG  +KC E+V L+KSL  L  E +NR +S+D E G  PN ++
Sbjct: 652 KEFVNKLDGDLELFKEMVGSLIKCLEDVTLLKSLTFLDKELENRKLSYDPELGNKPNSNI 711

Query: 729 PRTLSPDEE-EIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKE 787
            R   P+EE EI  I+ S+LQHSKEV + ++  + +E+  SQ VL L  LGFC+++ +KE
Sbjct: 712 FRISGPNEEDEIGSIMHSYLQHSKEVVDKLHAVEDKEQK-SQMVLNLGALGFCMNNFIKE 770

Query: 788 TTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
             +++K I+EL++WENP +++NL EISCK+ A Y
Sbjct: 771 ARELQKGIQELVQWENPGKDVNLLEISCKIAALY 804

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104475|ref|XP_002313448.1| predicted protein [Populus trichocarpa] gi|222849856|gb|EEE87403.1| predicted protein [Populus trichocarpa]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/824 (50%), Positives = 563/824 (68%), Gaps = 24/824 (2%)

Query: 4   ITRADSTTKALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSD 63
           ++ A    +A+W R L SA RTALAC+IVG TTLY P  +RH  AFPAFSYVT ILI++D
Sbjct: 1   MSAATERARAVWLRCLASAFRTALACTIVGCTTLYGPASIRHHIAFPAFSYVTVILIVTD 60

Query: 64  ATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTAL 123
           ATLGD L GCW ALYAT+Q + P++L LWL+GP   T+   ++ V L +FVV  PE T L
Sbjct: 61  ATLGDALHGCWLALYATVQSVGPALLSLWLIGPAMLTSGTISLAVALGAFVVVFPEGTHL 120

Query: 124 MAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEV 183
           +AKRIA GQIVIV V   ++G  T  +MH +HVA+STA+G LA V+A+LLPYPRLA  E+
Sbjct: 121 VAKRIALGQIVIVYVIAFINGVHTEAIMHTLHVAASTAIGVLACVLALLLPYPRLACWEL 180

Query: 184 KKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLW 243
           K + +  AEN S  LN +VKAFCA+D+  AL SIS+AK L  AGAK L SIK  QE + W
Sbjct: 181 KLNCERLAENVSARLNLYVKAFCAEDSALALTSISQAKPLAVAGAKLLQSIKRYQESVKW 240

Query: 244 ERPQIRFLKPNYKDPREKLQELEIPIRGMELALTSC-PSFPVGMIDEDLRDVLQSLKAEI 302
           ER  +RFL+  Y +P E+LQELEIP+RGME+ALTSC  S PV ++D + +  L  L   +
Sbjct: 241 ERLPLRFLRNLYLNPGERLQELEIPLRGMEMALTSCTTSLPVRILDGETKHGLVQLVENV 300

Query: 303 GLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISST-EDVPASFFFYCIKLLQD--- 358
            L  +Q K     D+ T PE+  +   ES  + + IS+  +D+P+ FF +C+KLL     
Sbjct: 301 SLIQKQIKNCLPRDSLTVPESNADNIVESHQTPQTISTRHQDLPSFFFLFCMKLLHCKSL 360

Query: 359 GLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSL 418
           G P+ P           T  +GSS    Q  F  K  W+S+    + S + L+ A KCSL
Sbjct: 361 GKPITP-----------TQQKGSSTPSKQTGF-FKSTWMSNWSTSVSS-KRLMPAFKCSL 407

Query: 419 SLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLL 478
           SLGLAV+ GL+Y+K++GYWSGL +AIS A  R+ATFKVAN +AQGT +G+VYGV   F+ 
Sbjct: 408 SLGLAVLFGLIYSKKDGYWSGLPVAISLAAAREATFKVANVKAQGTVLGTVYGVFGCFVF 467

Query: 479 QKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARIT 538
           ++ ++ RF+ LLPW + +SFLRHS+ Y +AG ISAVIGA+L+LGRKN+G PSEFAIARI 
Sbjct: 468 ERYLSIRFISLLPWFVITSFLRHSKTYGQAGGISAVIGAVLVLGRKNFGPPSEFAIARIV 527

Query: 539 EASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRD 598
           E  +GL C I+V++L QP RA++LAKAQL++  + L   I  I L A+ K     T+L +
Sbjct: 528 ETFIGLSCSIMVDLLLQPTRASSLAKAQLSKCFETLSACIGSISLAANNK-----TSLLE 582

Query: 599 KQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLS 658
            Q+RLK  ++EL KFI EAE+EPNFWFLPF   CY  +L SLSR+ DLLLF A     L 
Sbjct: 583 NQRRLKLDVSELGKFIGEAEVEPNFWFLPFPSPCYFKLLGSLSRLVDLLLFSADAVGLLE 642

Query: 659 QLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDV 718
             S++FG SWK+    ++ DLE+FKE  G  +KCFE+V ++ SL  L  E +N+NISHD+
Sbjct: 643 HESQKFGASWKEYVTKLDGDLEIFKEMSGSLVKCFEDVTMLLSLEFLEKELENKNISHDL 702

Query: 719 ESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHL-SQTVLVLNGL 777
           E G+  N ++ +    +E++I+ + SS+LQHSKE+ +  +  D  E+ L SQ VL L+ L
Sbjct: 703 EMGKSSNRNIFKVSGSNEDKIDSVTSSYLQHSKEMVDKFHAADEGERELKSQVVLCLSAL 762

Query: 778 GFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
           GFC+S+L+KET +IEK I E+++WENP+++INLYEISCK+ A Y
Sbjct: 763 GFCMSNLIKETKEIEKGIIEILQWENPSKHINLYEISCKIRALY 806

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435010|ref|XP_002281216.1| PREDICTED: uncharacterized protein LOC100243247 [Vitis vinifera]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/816 (48%), Positives = 550/816 (67%), Gaps = 20/816 (2%)

Query: 12  KALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLR 71
           +A+W   L SA RTALAC+IVG  +LY P  LR    FPAFSY T I+I++ ATLGDT+R
Sbjct: 15  RAMWLSCLASAFRTALACTIVGCASLYGPASLRRQIEFPAFSYATVIIIINGATLGDTVR 74

Query: 72  GCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFG 131
            CW A YAT+  + P+IL LW++GP R +    A  V L +FVV LPE + L+ +RIA G
Sbjct: 75  ACWQAAYATVLGVCPAILSLWVIGPTRLSIGNMAAAVALSAFVVGLPEWSGLVVERIALG 134

Query: 132 QIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYA 191
           QIVIV +  ++ G +T  VMHP+HVA+STA+G LA V+A+L PYPRLA +EVK+  KL+A
Sbjct: 135 QIVIVYLLALLKGGETDAVMHPVHVAASTAVGVLACVLALLFPYPRLASYEVKQKCKLFA 194

Query: 192 ENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFL 251
           ENASE L  FVKAFCA+D+ +AL SI++AK    AGAK   S+K +Q  M WER  ++  
Sbjct: 195 ENASERLKLFVKAFCAEDHASALSSIAQAKRFAVAGAKLHHSVKRRQGSMQWERLPLKMF 254

Query: 252 KPNYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQ--A 309
           KP YK+P E+LQ +++P+RGME+ALTS PSFPV ++D +L+  L  L+  + L L+Q   
Sbjct: 255 KPCYKNPGERLQCIQMPLRGMEIALTSSPSFPVRIMDGELKQGLVQLEEHLSLTLKQLEL 314

Query: 310 KCYASFDATTAPETQKNCKDESLWSLKAISST-EDVPASFFFYCIKLLQDGLPVAP-NAE 367
           KC +  D++T PE+      +SL + + I  T +++P  FF +C+KLL       P N+ 
Sbjct: 315 KCSSPSDSSTVPESTAENVVKSLQNFQTIPPTHKELPYFFFLFCMKLLHSESMAKPFNSC 374

Query: 368 FVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILG 427
              N   +   EG  +S  Q      L+ +SSS  +      L+ ALKCSLSLGLAV+ G
Sbjct: 375 LQPNSVGK--NEGVDDSGKQK--GSFLEGVSSSWSMKVDRSRLMPALKCSLSLGLAVLFG 430

Query: 428 LMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFL 487
           ++Y+KENG+W+GL +AI+F++ R+ATFKVAN + QGT +G+VYGV+  F+ ++ V   F+
Sbjct: 431 MIYSKENGFWAGLPVAITFSSAREATFKVANLKVQGTVLGTVYGVLGCFVFERFVKLWFI 490

Query: 488 PLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICF 547
            L PW IF+SFL+ S++Y +AG +SAVI A+LILGRKN+G+PSEFAIARI E  +GL C 
Sbjct: 491 SLFPWFIFTSFLQRSQIYGQAGGLSAVISAVLILGRKNFGSPSEFAIARIVETFIGLSCS 550

Query: 548 IIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHI 607
           ++V+I  QP RA+TLAK QL++ L+AL D I  I L A +      + L +  K LKSH+
Sbjct: 551 VLVDIALQPTRASTLAKVQLSKCLEALHDCICSISLCASK------SNLEENHKVLKSHL 604

Query: 608 NELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVS 667
           NEL KFI EAE+EPNF FLP H + Y  +L SLS+MADLL+ VA+   FL Q + +   S
Sbjct: 605 NELGKFIGEAEVEPNFLFLPLHSAAYSRLLVSLSKMADLLVHVAHALRFLEQETSKPEAS 664

Query: 668 WKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNED 727
           WK   + ++ DL+ FKE +   +K FEEV  IKSL  L  E + +NIS+D+E G+ P  +
Sbjct: 665 WKDAVDKVDGDLKPFKEMLASLIKSFEEVASIKSLPALEKELEEKNISYDLEMGKSPTTN 724

Query: 728 VPRTLSPD--EEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLM 785
           + R       E+E+E+++S +LQ+SKE+   + G +      S  VL L+GLGFC+S LM
Sbjct: 725 LSRLAGSGNREDEMEKMISCYLQNSKEIVEGVEGEEVR----SLMVLSLSGLGFCMSGLM 780

Query: 786 KETTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
           +ET +IE+ IK++++WEN + ++NLYEISCK +A Y
Sbjct: 781 RETREIEQGIKDIVQWENHSSHVNLYEISCKAHALY 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843231|emb|CAN80549.1| hypothetical protein VITISV_019389 [Vitis vinifera]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/814 (48%), Positives = 547/814 (67%), Gaps = 20/814 (2%)

Query: 14  LWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGC 73
           +W   L SA RTALAC+IVG  +LY P  LR    FPAFSY T I+I++ ATLGDT+R C
Sbjct: 1   MWLSCLASAFRTALACTIVGCASLYGPASLRRQIEFPAFSYATVIIIINGATLGDTVRAC 60

Query: 74  WHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQI 133
           W A YAT+  + P+IL LW++GP R +    A  V L +FVV LPE + L+ +RIA GQI
Sbjct: 61  WQAAYATVLGVCPAILSLWVIGPTRLSIGNMAAAVALSAFVVGLPEWSGLVVERIALGQI 120

Query: 134 VIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAEN 193
           VIV +  ++ G +T  VMHP+HVA+STA+G LA V+A+L PYPRLA +EVK+  KL+AEN
Sbjct: 121 VIVYLLALLKGGETDAVMHPVHVAASTAVGVLACVLALLFPYPRLASYEVKQKCKLFAEN 180

Query: 194 ASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKP 253
           ASE L  FVKAFCA+D+ +AL SI++AK    AGAK   S+K +Q  M WER  ++  KP
Sbjct: 181 ASERLKLFVKAFCAEDHASALSSIAQAKRFAVAGAKLHHSVKRRQGSMQWERLPLKMFKP 240

Query: 254 NYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQ--AKC 311
            YK+P E+LQ +++P+RGME+ALTS PSFPV ++D +L+  L  L+  + L L+Q   KC
Sbjct: 241 CYKNPGERLQCIQMPLRGMEIALTSSPSFPVRIMDGELKQGLVQLEEHLSLTLKQLELKC 300

Query: 312 YASFDATTAPETQKNCKDESLWSLKAISST-EDVPASFFFYCIKLLQDGLPVAP-NAEFV 369
            +  D++T PE+      +SL + + I  T +++P  FF +C+KLL       P N+   
Sbjct: 301 SSPSDSSTVPESTAENVVKSLQNFQTIPPTHKELPYFFFLFCMKLLHSESMAKPFNSCLQ 360

Query: 370 VNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLM 429
            N   +   EG  +S  Q      L+ +SS   +      L+ ALKCSLSLGLAV+ G++
Sbjct: 361 PNSVGK--NEGVDDSGKQK--GSFLEGVSSXWSMKVDRSRLMPALKCSLSLGLAVLFGMI 416

Query: 430 YNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPL 489
           Y+KENG+W+GL +AI+F++ R+ATFKVAN + QGT +G+VYGV+  F+ ++ V   F+ L
Sbjct: 417 YSKENGFWAGLPVAITFSSAREATFKVANLKVQGTVLGTVYGVLGCFVFERFVKLWFISL 476

Query: 490 LPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFII 549
            PW IF+SFL+ S++Y +AG +SAVI A+LILGRKN+G+PSEFAIARI E  +GL C ++
Sbjct: 477 FPWFIFTSFLQRSQIYGQAGGLSAVISAVLILGRKNFGSPSEFAIARIVETFIGLSCSVL 536

Query: 550 VEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINE 609
           V+I  QP RA+TLAK QL++ L+AL D I  I L A +      + L +  K LKSH+NE
Sbjct: 537 VDIALQPTRASTLAKVQLSKCLEALHDCICSISLCASK------SNLEENHKVLKSHLNE 590

Query: 610 LDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWK 669
           L KFI EAE+EPNF FLP H + Y  +L SLS+MADLL+ VA+   FL Q + +   SWK
Sbjct: 591 LGKFIGEAEVEPNFLFLPLHSAAYSRLLVSLSKMADLLVHVAHALRFLEQETSKPEASWK 650

Query: 670 QIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVP 729
              + ++ DL+ FKE +   +K FEEV  IKSL  L  E + +NIS+D+E G+ P  ++ 
Sbjct: 651 DAVDKVDGDLKPFKEMLASLIKSFEEVASIKSLPALEKELEEKNISYDLEMGKSPTTNLS 710

Query: 730 RTLSPD--EEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKE 787
           R       E+E+E+++S +LQ+SKE+   + G +      S  VL L+GLGFC+S LM+E
Sbjct: 711 RLAGSGNREDEMEKMISCYLQNSKEIVEGVEGEEVR----SLMVLSLSGLGFCMSGLMRE 766

Query: 788 TTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
           T +IE+ IK++++WEN + ++NLYEISCK +A Y
Sbjct: 767 TREIEQGIKDIVQWENHSSHVNLYEISCKAHALY 800

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746109|emb|CBI16165.3| unnamed protein product [Vitis vinifera]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/813 (47%), Positives = 544/813 (66%), Gaps = 36/813 (4%)

Query: 14  LWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGC 73
           +W   L SA RTALAC+IVG  +LY P  LR    FPAFSY T I+I++ ATLGDT+R C
Sbjct: 1   MWLSCLASAFRTALACTIVGCASLYGPASLRRQIEFPAFSYATVIIIINGATLGDTVRAC 60

Query: 74  WHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQI 133
           W A YAT+  + P+IL LW++GP R +    A  V L +FVV LPE + L+ +RIA GQI
Sbjct: 61  WQAAYATVLGVCPAILSLWVIGPTRLSIGNMAAAVALSAFVVGLPEWSGLVVERIALGQI 120

Query: 134 VIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAEN 193
           VIV +  ++ G +T  VMHP+HVA+STA+G LA V+A+L PYPRLA +EVK+  KL+AEN
Sbjct: 121 VIVYLLALLKGGETDAVMHPVHVAASTAVGVLACVLALLFPYPRLASYEVKQKCKLFAEN 180

Query: 194 ASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKP 253
           ASE L  FVKAFCA+D+ +AL SI++AK    AGAK   S+K +Q  M WER  ++  KP
Sbjct: 181 ASERLKLFVKAFCAEDHASALSSIAQAKRFAVAGAKLHHSVKRRQGSMQWERLPLKMFKP 240

Query: 254 NYKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQ--AKC 311
            YK+P E+LQ +++P+RGME+ALTS PSFPV ++D +L+  L  L+  + L L+Q   KC
Sbjct: 241 CYKNPGERLQCIQMPLRGMEIALTSSPSFPVRIMDGELKQGLVQLEEHLSLTLKQLELKC 300

Query: 312 YASFDATTAPETQKNCKDESLWSLKAISST-EDVPASFFFYCIKLLQDGLPVAPNAEFVV 370
            +  D++T PE+      +SL + + I  T +++P  FF +C+KLL       P      
Sbjct: 301 SSPSDSSTVPESTAENVVKSLQNFQTIPPTHKELPYFFFLFCMKLLHSESMAKP-----F 355

Query: 371 NETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMY 430
           N   + ++ G +E  + +  + +         L+P       ALKCSLSLGLAV+ G++Y
Sbjct: 356 NSCLQPNSVGKNEGVDDSVDRSR---------LMP-------ALKCSLSLGLAVLFGMIY 399

Query: 431 NKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLL 490
           +KENG+W+GL +AI+F++ R+ATFKVAN + QGT +G+VYGV+  F+ ++ V   F+ L 
Sbjct: 400 SKENGFWAGLPVAITFSSAREATFKVANLKVQGTVLGTVYGVLGCFVFERFVKLWFISLF 459

Query: 491 PWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIV 550
           PW IF+SFL+ S++Y +AG +SAVI A+LILGRKN+G+PSEFAIARI E  +GL C ++V
Sbjct: 460 PWFIFTSFLQRSQIYGQAGGLSAVISAVLILGRKNFGSPSEFAIARIVETFIGLSCSVLV 519

Query: 551 EILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINEL 610
           +I  QP RA+TLAK QL++ L+AL D I  I L A +      + L +  K LKSH+NEL
Sbjct: 520 DIALQPTRASTLAKVQLSKCLEALHDCICSISLCASK------SNLEENHKVLKSHLNEL 573

Query: 611 DKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQ 670
            KFI EAE+EPNF FLP H + Y  +L SLS+MADLL+ VA+   FL Q + +   SWK 
Sbjct: 574 GKFIGEAEVEPNFLFLPLHSAAYSRLLVSLSKMADLLVHVAHALRFLEQETSKPEASWKD 633

Query: 671 IQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVPR 730
             + ++ DL+ FKE +   +K FEEV  IKSL  L  E + +NIS+D+E G+ P  ++ R
Sbjct: 634 AVDKVDGDLKPFKEMLASLIKSFEEVASIKSLPALEKELEEKNISYDLEMGKSPTTNLSR 693

Query: 731 TLSPD--EEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKET 788
                  E+E+E+++S +LQ+SKE+   + G +      S  VL L+GLGFC+S LM+ET
Sbjct: 694 LAGSGNREDEMEKMISCYLQNSKEIVEGVEGEEVR----SLMVLSLSGLGFCMSGLMRET 749

Query: 789 TKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
            +IE+ IK++++WEN + ++NLYEISCK +A Y
Sbjct: 750 REIEQGIKDIVQWENHSSHVNLYEISCKAHALY 782

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684006|ref|NP_180444.2| uncharacterized protein [Arabidopsis thaliana] gi|28393386|gb|AAO42117.1| unknown protein [Arabidopsis thaliana] gi|30793957|gb|AAP40430.1| unknown protein [Arabidopsis thaliana] gi|330253076|gb|AEC08170.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/822 (45%), Positives = 521/822 (63%), Gaps = 46/822 (5%)

Query: 12  KALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLR 71
           +A+WR  L SA RTALAC+IVG  TLY PE +    AFPAFSYVT ILI++DATLGDTLR
Sbjct: 8   RAMWRTCLASAFRTALACTIVGSATLYGPEWINRHVAFPAFSYVTVILIITDATLGDTLR 67

Query: 72  GCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPES-TALMAKRIAF 130
           GCW ALYAT Q + P+I+ L L+ P R TA+  A+   L +FVV LP S T L+AKRIA 
Sbjct: 68  GCWLALYATCQSVGPAIVTLKLIRPARLTAETTALAAALAAFVVVLPNSSTHLVAKRIAL 127

Query: 131 GQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLY 190
           GQIV++ V   + GAKT  VMHP+ VA+STALG +A V+A+L+P PRLA  EVK+S K  
Sbjct: 128 GQIVLIYVIGYIKGAKTDPVMHPLQVAASTALGVVACVLALLVPLPRLATCEVKQSCKEL 187

Query: 191 AENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRF 250
            +N +  +  ++KAFC+ D+ +A  S+S+A+ L ++ +K   ++K  Q  M WER   + 
Sbjct: 188 GQNVTTRVKLYMKAFCSDDSMSATASVSQARVLARSSSKLYQTLKRYQPSMTWERLPFKI 247

Query: 251 LK-PNYKDPR-EKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQ 308
            +  N  D + EKLQ +EI +RGME+ + S    P  ++  ++++ L++++  + L +++
Sbjct: 248 WRWQNVNDNKGEKLQSMEIALRGMEMVVASKSPIPSSLLAGEVKEDLKNIQERVILSIKR 307

Query: 309 AKCYASFDATTAPETQKNCKDESLWSLKAISST-EDVPASFFFYCIKLLQDGLPVAPNAE 367
                S   +  PE+     DE L +L+ I  T +D+P  FF +CI+LL+  +   P   
Sbjct: 308 VN--NSSQPSVTPESDPKNPDECLQTLQEIPGTPQDLPFYFFLFCIRLLETIIIAKP--- 362

Query: 368 FVVNETRETHTEGSSESQNQNKFKCKLKWISS--SLFLLPSLESLVFALKCSLSLGLAVI 425
                      E +     +NKFK +  WIS   S  ++P       ALK SLSLGLA++
Sbjct: 363 -----------EENKVKVLENKFKTR-SWISDWDSKKIMP-------ALKLSLSLGLAIL 403

Query: 426 LGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFR 485
           LG M++K NGYW+GL +A+SFA  R+ATFKV N +AQGT +G+VYGV+  F+ QK +  R
Sbjct: 404 LGSMFSKPNGYWAGLPVAVSFAAAREATFKVTNVKAQGTVIGTVYGVMGCFVFQKFLTVR 463

Query: 486 FLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLI 545
           FL LLPW +FSSFL  S+MY +AG ISA IGA+LILGRKN+G PSEFAI RI E  +GL 
Sbjct: 464 FLSLLPWFLFSSFLSRSKMYGQAGGISAAIGAVLILGRKNFGPPSEFAIERIIETFIGLS 523

Query: 546 CFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKS 605
           C I+VE++FQP RAA +AK +L++S  AL +      LF     KA+   + + QK+L+S
Sbjct: 524 CSIMVELVFQPTRAANIAKLELSRSFHALYECAS---LFG---AKASKADIMESQKKLRS 577

Query: 606 HINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFG 665
           H+NEL KF AEA  EP+FWF PF+ SCYE +  SLS+MADLL F  Y   FL +  +   
Sbjct: 578 HLNELKKFTAEAHAEPSFWFSPFNFSCYEKLFKSLSKMADLLQFSGYAIGFLGEQGKTKS 637

Query: 666 VSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPE-RQNRNISHDVESGRLP 724
              K+I   ++ DL+   E +G   K FEE+ L+KSL  L     ++ N S D+E G+ P
Sbjct: 638 PQCKEILSNVDKDLKSLTESIGLLAKSFEEITLLKSLDALEKALAKSDNTSWDIELGKTP 697

Query: 725 NEDVPRTLSPDEEEIEEILSSFLQHSKEVANSI-----NGYDGEEKHLSQTVLVLNGLGF 779
           N      +S    E E+IL ++LQH + VA+ +     +G +  E   S+ VL L  LGF
Sbjct: 698 NPSFSTAVS----EPEKILETYLQHCRSVADGLFRVEEDGEEEVEVDKSEVVLSLCALGF 753

Query: 780 CISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
           C+  + KET +IE+ +KE+++ ENP+ ++NL+EISCK+ + Y
Sbjct: 754 CVERIGKETREIEEMVKEVVQSENPSSHVNLHEISCKIRSLY 795

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3927826|gb|AAC79583.1| hypothetical protein [Arabidopsis thaliana]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/822 (45%), Positives = 521/822 (63%), Gaps = 46/822 (5%)

Query: 12  KALWRRRLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLR 71
           +A+WR  L SA RTALAC+IVG  TLY PE +    AFPAFSYVT ILI++DATLGDTLR
Sbjct: 6   RAMWRTCLASAFRTALACTIVGSATLYGPEWINRHVAFPAFSYVTVILIITDATLGDTLR 65

Query: 72  GCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPES-TALMAKRIAF 130
           GCW ALYAT Q + P+I+ L L+ P R TA+  A+   L +FVV LP S T L+AKRIA 
Sbjct: 66  GCWLALYATCQSVGPAIVTLKLIRPARLTAETTALAAALAAFVVVLPNSSTHLVAKRIAL 125

Query: 131 GQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLY 190
           GQIV++ V   + GAKT  VMHP+ VA+STALG +A V+A+L+P PRLA  EVK+S K  
Sbjct: 126 GQIVLIYVIGYIKGAKTDPVMHPLQVAASTALGVVACVLALLVPLPRLATCEVKQSCKEL 185

Query: 191 AENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRF 250
            +N +  +  ++KAFC+ D+ +A  S+S+A+ L ++ +K   ++K  Q  M WER   + 
Sbjct: 186 GQNVTTRVKLYMKAFCSDDSMSATASVSQARVLARSSSKLYQTLKRYQPSMTWERLPFKI 245

Query: 251 LK-PNYKDPR-EKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQ 308
            +  N  D + EKLQ +EI +RGME+ + S    P  ++  ++++ L++++  + L +++
Sbjct: 246 WRWQNVNDNKGEKLQSMEIALRGMEMVVASKSPIPSSLLAGEVKEDLKNIQERVILSIKR 305

Query: 309 AKCYASFDATTAPETQKNCKDESLWSLKAISST-EDVPASFFFYCIKLLQDGLPVAPNAE 367
                S   +  PE+     DE L +L+ I  T +D+P  FF +CI+LL+  +   P   
Sbjct: 306 VN--NSSQPSVTPESDPKNPDECLQTLQEIPGTPQDLPFYFFLFCIRLLETIIIAKP--- 360

Query: 368 FVVNETRETHTEGSSESQNQNKFKCKLKWISS--SLFLLPSLESLVFALKCSLSLGLAVI 425
                      E +     +NKFK +  WIS   S  ++P       ALK SLSLGLA++
Sbjct: 361 -----------EENKVKVLENKFKTR-SWISDWDSKKIMP-------ALKLSLSLGLAIL 401

Query: 426 LGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFR 485
           LG M++K NGYW+GL +A+SFA  R+ATFKV N +AQGT +G+VYGV+  F+ QK +  R
Sbjct: 402 LGSMFSKPNGYWAGLPVAVSFAAAREATFKVTNVKAQGTVIGTVYGVMGCFVFQKFLTVR 461

Query: 486 FLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLI 545
           FL LLPW +FSSFL  S+MY +AG ISA IGA+LILGRKN+G PSEFAI RI E  +GL 
Sbjct: 462 FLSLLPWFLFSSFLSRSKMYGQAGGISAAIGAVLILGRKNFGPPSEFAIERIIETFIGLS 521

Query: 546 CFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKS 605
           C I+VE++FQP RAA +AK +L++S  AL +      LF     KA+   + + QK+L+S
Sbjct: 522 CSIMVELVFQPTRAANIAKLELSRSFHALYECAS---LFG---AKASKADIMESQKKLRS 575

Query: 606 HINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFG 665
           H+NEL KF AEA  EP+FWF PF+ SCYE +  SLS+MADLL F  Y   FL +  +   
Sbjct: 576 HLNELKKFTAEAHAEPSFWFSPFNFSCYEKLFKSLSKMADLLQFSGYAIGFLGEQGKTKS 635

Query: 666 VSWKQIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPE-RQNRNISHDVESGRLP 724
              K+I   ++ DL+   E +G   K FEE+ L+KSL  L     ++ N S D+E G+ P
Sbjct: 636 PQCKEILSNVDKDLKSLTESIGLLAKSFEEITLLKSLDALEKALAKSDNTSWDIELGKTP 695

Query: 725 NEDVPRTLSPDEEEIEEILSSFLQHSKEVANSI-----NGYDGEEKHLSQTVLVLNGLGF 779
           N      +S    E E+IL ++LQH + VA+ +     +G +  E   S+ VL L  LGF
Sbjct: 696 NPSFSTAVS----EPEKILETYLQHCRSVADGLFRVEEDGEEEVEVDKSEVVLSLCALGF 751

Query: 780 CISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKLNATY 821
           C+  + KET +IE+ +KE+++ ENP+ ++NL+EISCK+ + Y
Sbjct: 752 CVERIGKETREIEEMVKEVVQSENPSSHVNLHEISCKIRSLY 793

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	823
TAIR|locus:2074889	775	AT3G09450 [Arabidopsis thalian	0.552	0.587	0.414	1e-156
TAIR|locus:2053200	796	AT2G28780 [Arabidopsis thalian	0.629	0.650	0.380	1.7e-84

TAIR|locus:2074889 AT3G09450 [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 1.0e-156, Sum P(2) = 1.0e-156
 Identities = 196/473 (41%), Positives = 267/473 (56%)

Query:   320 APETQKNCKDE-SL-WSLKAIS-STEDVPASFFFYCIKLLQ-DGLPVAPNAEFVVNETRE 375
             AP ++   K + SL W  +A S ST  +P  FF YC++L + D L +  +++ V   T E
Sbjct:   300 APRSESTLKSQDSLGWHHEAESLSTAALPVCFFRYCVELFRGDFLSLRQDSKSVNGRTTE 359

Query:   376 THTEGSSESQNQ-NKFKCKLKWIXXXXXXXXXXXXXVFALKCSLSLGLAVILGLMYNKEN 434
                  ++E  +   KF     W              VFA KCS+SLGLAV+ G++YNK N
Sbjct:   360 EEIHPANEGLSMARKF-----W--DILCVWMARERFVFAFKCSISLGLAVLFGILYNKNN 412

Query:   435 GYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWII 494
             GYWSGLT+AIS  + RQAT  VAN+R QGTAMGSVYG+IC  + Q+   FRFLPLLPWII
Sbjct:   413 GYWSGLTVAISLVSGRQATLTVANSRLQGTAMGSVYGLICCSVFQRLEEFRFLPLLPWII 472

Query:   495 FSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILF 554
              + F+RHS++Y + G ++A I ALLILGR+NYG P+EFAIARI EAS+GL+CF+  EIL 
Sbjct:   473 LAVFMRHSKVYGQPGGVTAAIAALLILGRRNYGAPTEFAIARIVEASIGLLCFVFGEILV 532

Query:   555 QPXXXXXXXXXXXXXXXXXXXDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFI 614
              P                   D I+ +VL ++QK +     LR  Q +LKSH+  L++F 
Sbjct:   533 TPARAATLARTEISHCLDALLDCIQSLVLCSEQKNQKVVADLRKSQVKLKSHVEALERFA 592

Query:   615 AEAEMEPNFWFLP-FHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQE 673
             AEA  EP   FL   +   Y  +L S S+++DL L+V    + LS +       W    +
Sbjct:   593 AEALTEPKIPFLRRLNTDSYNRLLGSFSKISDLCLYVCDGLKNLSGVQPTLAFPW----D 648

Query:   674 PINDDLELFKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVP-RTL 732
              I  +L  F+EK+  S+KC +E+   KS A L  E Q R I HDVE+G   N++     L
Sbjct:   649 NITHELRAFQEKLHPSVKCLKEISQTKSQARLQKELQKRKICHDVEAGTTSNDNYSYMEL 708

Query:   733 SPDXXXXXXXLSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLM 785
              P          SF+   KE  + I+    ++   S+T L L+ LGFCIS LM
Sbjct:   709 GPSQADVERFSVSFVMLLKEATDKISCNTADDAFKSETALCLSSLGFCISRLM 761

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2053200 AT2G28780 [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 213/560 (38%), Positives = 305/560 (54%)

Query:   287 IDEDLRDVLQSLKAEI-GLKL---EQAKCYASFDATTAPETQKNCKDESLWSLKAISSTE 342
             ++++  + LQS++  + G+++    ++   +S  A    E  KN ++  + S+K ++++ 
Sbjct:   253 VNDNKGEKLQSMEIALRGMEMVVASKSPIPSSLLAGEVKEDLKNIQERVILSIKRVNNSS 312

Query:   343 D---VPASFFFY---CIKLLQD--GLPVAPNAEFVVNETR--ETHTEGSSESQN----QN 388
                  P S       C++ LQ+  G P      F +   R  ET      E       +N
Sbjct:   313 QPSVTPESDPKNPDECLQTLQEIPGTPQDLPFYFFLFCIRLLETIIIAKPEENKVKVLEN 372

Query:   389 KFKCKLKWIXXXXXXXXXXXXXVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFAT 448
             KFK +  WI               ALK SLSLGLA++LG M++K NGYW+GL +A+SFA 
Sbjct:   373 KFKTR-SWISDWDSKKIMP-----ALKLSLSLGLAILLGSMFSKPNGYWAGLPVAVSFAA 426

Query:   449 NRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEA 508
              R+ATFKV N +AQGT +G+VYGV+  F+ QK +  RFL LLPW +FSSFL  S+MY +A
Sbjct:   427 AREATFKVTNVKAQGTVIGTVYGVMGCFVFQKFLTVRFLSLLPWFLFSSFLSRSKMYGQA 486

Query:   509 GAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPXXXXXXXXXXXX 568
             G ISA IGA+LILGRKN+G PSEFAI RI E  +GL C I+VE++FQP            
Sbjct:   487 GGISAAIGAVLILGRKNFGPPSEFAIERIIETFIGLSCSIMVELVFQPTRAANIAKLELS 546

Query:   569 XXXXXXXDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPF 628
                    +      LF     KA+   + + QK+L+SH+NEL KF AEA  EP+FWF PF
Sbjct:   547 RSFHALYECAS---LFG---AKASKADIMESQKKLRSHLNELKKFTAEAHAEPSFWFSPF 600

Query:   629 HGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGH 688
             + SCYE +  SLS+MADLL F  Y   FL +  +      K+I   ++ DL+   E +G 
Sbjct:   601 NFSCYEKLFKSLSKMADLLQFSGYAIGFLGEQGKTKSPQCKEILSNVDKDLKSLTESIGL 660

Query:   689 SLKCFEEVILIKSLAVLAPE-RQNRNISHDVESGRLPNEDVPRTLS-PDXXXXXXXLSSF 746
               K FEE+ L+KSL  L     ++ N S D+E G+ PN      +S P+       L ++
Sbjct:   661 LAKSFEEITLLKSLDALEKALAKSDNTSWDIELGKTPNPSFSTAVSEPEKI-----LETY 715

Query:   747 LQHSKEVANSINGY--DGEEK---HLSQTVLVLNGLGFCISSLMXXXXXXXXXXXXXXXX 801
             LQH + VA+ +     DGEE+     S+ VL L  LGFC+  +                 
Sbjct:   716 LQHCRSVADGLFRVEEDGEEEVEVDKSEVVLSLCALGFCVERIGKETREIEEMVKEVVQS 775

Query:   802 XNPTRNINLYEISCKLNATY 821
              NP+ ++NL+EISCK+ + Y
Sbjct:   776 ENPSSHVNLHEISCKIRSLY 795

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	823
pfam13515	125	pfam13515, FUSC_2, Fusaric acid resistance protein	7e-13
pfam04632	649	pfam04632, FUSC, Fusaric acid resistance protein f	8e-09
COG1289	674	COG1289, COG1289, Predicted membrane protein [Func	5e-07
COG4129	332	COG4129, COG4129, Predicted membrane protein [Func	0.002
COG1289	674	COG1289, COG1289, Predicted membrane protein [Func	0.003

>gnl|CDD|222189 pfam13515, FUSC_2, Fusaric acid resistance protein-like

 Score = 65.7 bits (161), Expect = 7e-13
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 422 LAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKS 481
           LAV++ L+    +GYW+ LT  I       AT + A  R  GT +G + G +  +LL   
Sbjct: 1   LAVLIALLLGLPHGYWAPLTAVIVLQPTLGATVRRAKQRILGTVLGVLLGALLLYLLPS- 59

Query: 482 VNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEAS 541
              + + LL  + F +F    R Y  A A   +    L+L     G P E A+ R+ +  
Sbjct: 60  -PLQLILLLALLGFLAFYFLGRNY--ALATIFITPLALLLASLAGGGPIELALLRLLDTL 116

Query: 542 LGLICFIIV 550
           +G++  ++V
Sbjct: 117 IGILIALLV 125

Length = 125

>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family

 Score = 58.8 bits (143), Expect = 8e-09
 Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 31/225 (13%)

Query: 410 LVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSV 469
            +FALK  L+  LA+ + L       YW+ +T+ I       A    +  R  GT +G+ 
Sbjct: 2   WLFALKTFLAAMLALYIALRLELPQPYWAMMTVFIVSQPLSGAVLSKSFYRVLGTLVGAA 61

Query: 470 YGV-ICSFLLQKSVNFRFLPLLP-WIIF----SSFLRHSRMYEEAGAISAVIGALLILGR 523
             V + +  +Q  +   FL  L  WI      S   R+ R Y     + A   A +I   
Sbjct: 62  AAVALVALFVQAPL--LFLLALALWIGLCTALSLLDRNFRSY---AFVLAGYTAAII--- 113

Query: 524 KNYGTPS--------EFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQ 575
                P+        + A+AR++E +LG++C  +V  LF P       +A+L   L+   
Sbjct: 114 ---ALPAVTDPETIFDIAVARVSEIALGILCAGLVSALFFPRSVGPALRARLRAWLRDAA 170

Query: 576 DGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEME 620
               D +      G     A   +  RL + I  L+   + A  E
Sbjct: 171 RLAADAL-----AGAGGAAAREARL-RLAADILALEALRSHAAFE 209

This family includes a conserved region found in two proteins associated with fusaric acid resistance,from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins. Length = 649

>gnl|CDD|224208 COG1289, COG1289, Predicted membrane protein [Function unknown]

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 12/167 (7%)

Query: 401 LFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANAR 460
           L   P+     +AL+  L+  LA+ L  +       W+  T+AI  A +  A       R
Sbjct: 2   LRRRPTNADWRYALRTFLAACLALALAFLLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKR 61

Query: 461 AQGTAMGSVYGVICSFLLQKSVNFRFLPLLP---WIIFSSFL--RHSRMYEEAGAISAVI 515
             GT +G     +   L+       +L LL    W+   + +   +  +      + A  
Sbjct: 62  LIGTLIG---FAVALLLVALLAQEPWLFLLLLTLWLGLCTAIGSLYRTIA-SYAFVLAGY 117

Query: 516 GALLILGRKNYGTPS---EFAIARITEASLGLICFIIVEILFQPARA 559
            AL+I        P    + A+ R+ E  LG++C  +V +L  P+R 
Sbjct: 118 TALIIGPAPAIPEPELLFDGAVWRVVEILLGILCAPVVPLLESPSRL 164

Length = 674

>gnl|CDD|226614 COG4129, COG4129, Predicted membrane protein [Function unknown]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 412 FALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYG 471
             LK  L+ GLA+++  +       ++G++  +  +   + + K A  R  G A+G++  
Sbjct: 12  RTLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILA 71

Query: 472 VICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSE 531
           V+   L            +  +I    L   ++      I+  +  +L+        P  
Sbjct: 72  VLFFLLFG---QNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAA----MIPLF 124

Query: 532 FAIARITEASLGLICFIIVEILFQP 556
               R     +G+    +V ++  P
Sbjct: 125 LIFNRFLLVFVGVGVAFLVNLVMPP 149

Length = 332

>gnl|CDD|224208 COG1289, COG1289, Predicted membrane protein [Function unknown]

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 410 LVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFA-TNRQATFKVANARAQGTAMGS 468
           L  AL+ +L+L L     L     +GYW  LT A+        AT + A  R  GT +G 
Sbjct: 355 LRHALRTALALLLGYAFWLALGWPHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGL 414

Query: 469 VYGVICSFLLQKSVNFRFLPLLPWIIFSSFL 499
           + G++   LL   +    L     ++ ++ L
Sbjct: 415 LLGLLVLLLLLPLIPGLLL----LLLLAALL 441

Length = 674

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	823
PF11744	406	ALMT: Aluminium activated malate transporter; Inte	100.0
PRK10631	652	p-hydroxybenzoic acid efflux subunit AaeB; Provisi	99.98
TIGR01667	701	YCCS_YHJK integral membrane protein, YccS/YhfK fam	99.97
TIGR01666	704	YCCS hypothetical membrane protein, TIGR01666. Thi	99.97
PF04632	650	FUSC: Fusaric acid resistance protein family; Inte	99.97
PRK11427	683	multidrug efflux system protein MdtO; Provisional	99.95
COG1289	674	Predicted membrane protein [Function unknown]	99.85
PF04632	650	FUSC: Fusaric acid resistance protein family; Inte	99.85
PRK11427	683	multidrug efflux system protein MdtO; Provisional	99.82
COG1289	674	Predicted membrane protein [Function unknown]	99.68
COG4129	332	Predicted membrane protein [Function unknown]	99.65
PF13515	128	FUSC_2: Fusaric acid resistance protein-like	99.56
PF06081	141	DUF939: Bacterial protein of unknown function (DUF	99.54
KOG4711	625	consensus Predicted membrane protein [General func	99.52
PRK10631	652	p-hydroxybenzoic acid efflux subunit AaeB; Provisi	99.35
PF11744	406	ALMT: Aluminium activated malate transporter; Inte	99.25
PF10337	459	DUF2422: Protein of unknown function (DUF2422); In	99.19
PF10334	229	DUF2421: Protein of unknown function (DUF2421); In	98.52
PF12805	284	FUSC-like: FUSC-like inner membrane protein yccS	98.49
TIGR01666	704	YCCS hypothetical membrane protein, TIGR01666. Thi	98.49
TIGR01667	701	YCCS_YHJK integral membrane protein, YccS/YhfK fam	98.38
PF10337	459	DUF2422: Protein of unknown function (DUF2422); In	97.59
COG4129	332	Predicted membrane protein [Function unknown]	97.36
PF11168	140	DUF2955: Protein of unknown function (DUF2955); In	97.33
PF12805	284	FUSC-like: FUSC-like inner membrane protein yccS	92.75
PF06081	141	DUF939: Bacterial protein of unknown function (DUF	92.58
PF10334	229	DUF2421: Protein of unknown function (DUF2421); In	90.78
PF13515	128	FUSC_2: Fusaric acid resistance protein-like	86.58
KOG4711	625	consensus Predicted membrane protein [General func	84.67
TIGR02865	764	spore_II_E stage II sporulation protein E. Stage I	82.13

>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana []

Probab=100.00  E-value=1.4e-31  Score=298.37  Aligned_cols=350  Identities=16%  Similarity=0.185  Sum_probs=249.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003403          405 PSLESLVFALKCSLSLGLAVILGLMYNK-----ENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQ  479 (823)
Q Consensus       405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l-----~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~  479 (823)
                      .|++++.|++|+++|++|..++.+.-..     .++.||++||++|+.|++|+|+.||++|++||++|+++|+++..+..
T Consensus         6 ~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~   85 (406)
T PF11744_consen    6 DDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLAS   85 (406)
T ss_pred             cCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999877653111     78999999999999999999999999999999999999999887764


Q ss_pred             chh---hHHHHHHHHHH--HHHHHHh-cch---hhHHHHHHHHHHHHHHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 003403          480 KSV---NFRFLPLLPWI--IFSSFLR-HSR---MYEEAGAISAVIGALLIL-GRKNYGTPSEFAIARITEASLGLICFII  549 (823)
Q Consensus       480 ~~p---~~~~l~L~vwi--~~~s~l~-~~~---~Y~lag~~~alI~~~~vl-g~~~~~~~~~~A~~Rv~ei~IGivia~~  549 (823)
                      ..+   ...++.+.+|+  +..+|.+ .|+   .|.+++.+..+ +|.++. +....++.++.|..|+..|++|++++++
T Consensus        86 ~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~L-Tf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~  164 (406)
T PF11744_consen   86 LSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFIL-TFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLL  164 (406)
T ss_pred             hcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHH-HHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            432   23334444443  4567776 221   24444444433 233332 2223456789999999999999999999


Q ss_pred             HHHHccCchhHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcC----C-CChhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003403          550 VEILFQPARAATLAKAQLAQSLQALQDGIKDIV---LFADQKG----K-ATPTALRDKQKRLKSHINELDKFIAEAEMEP  621 (823)
Q Consensus       550 V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~---L~~~~~~----~-~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP  621 (823)
                      |+.++||.|+++.|++.+...++.+++.++...   +.....+    . ..++...+..+.+..+-.+.+.+++.|+|||
T Consensus       165 vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WEP  244 (406)
T PF11744_consen  165 VSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWEP  244 (406)
T ss_pred             HHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhcc
Confidence            999999999999999999999999888877663   1111111    0 0111222334444444477999999999999


Q ss_pred             CC--CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhhhhhHhHHHHHHHHHhhhhhhhHHHHHH
Q 003403          622 NF--WFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILI  699 (823)
Q Consensus       622 ~~--w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~~~v~~~~~~~~~~v~~~l~~l~~~~~~  699 (823)
                      +|  .+..|||++|.++...+|+++..+.++..++..   +-| .|   .++...+++.|.+...-.+..++++..    
T Consensus       245 ~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~s---eiq-~p---~~~r~~~~~~~~~~~~e~~kvLrel~~----  313 (406)
T PF11744_consen  245 PHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNS---EIQ-AP---PELRQKFQEECTRVSSESAKVLRELSN----  313 (406)
T ss_pred             cccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccc---ccc-cc---HHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99  456999999999999999999999999888732   112 12   345566788888666666666666633    


Q ss_pred             hhHHhhhhhhhhcccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcCC-------------------
Q 003403          700 KSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGY-------------------  760 (823)
Q Consensus       700 ~s~~~l~~~~~~~~~~~dle~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-------------------  760 (823)
                                       .++.|+.+++.                +..+.+.++++++|+..                   
T Consensus       314 -----------------~ik~m~~~~~~----------------~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~  360 (406)
T PF11744_consen  314 -----------------SIKTMTKSSSI----------------DDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFL  360 (406)
T ss_pred             -----------------HHHhcccCCCc----------------hhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhc
Confidence                             23334444321                01234444444444421                   


Q ss_pred             -------cccccccccchhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003403          761 -------DGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELI  799 (823)
Q Consensus       761 -------~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l~~~v~el~  799 (823)
                             ...+..+.-++++++.+++.|-|++..++.+.+.|+||+
T Consensus       361 ~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~~v~eLa  406 (406)
T PF11744_consen  361 RPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENIVEAVEELA  406 (406)
T ss_pred             cccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                   113456788999999999999999999999999999984

; GO: 0010044 response to aluminum ion

>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional

Probab=99.98  E-value=2.7e-30  Score=302.80  Aligned_cols=228  Identities=20%  Similarity=0.276  Sum_probs=201.4

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhh---------ccChhHHHHHHHHHHHHHHHHHHHHHH
Q 003403          403 LLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISF---------ATNRQATFKVANARAQGTAMGSVYGVI  473 (823)
Q Consensus       403 ~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~---------qps~GaT~~k~~~Ri~GTvlGav~g~~  473 (823)
                      ..|++.+|+|++|+++|+++|+++++++++++||||++||+||+         ||..|++++||++|++||++|+++|++
T Consensus         2 ~~p~~~~~~falk~~lA~~LAL~ia~~l~L~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~   81 (652)
T PRK10631          2 FSIANQRLRFAVKLAFAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALV   81 (652)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999         999999999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHH----hcchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH
Q 003403          474 CSFLLQKSVNFRFLPLLPWIIFSSFL----RHSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICF  547 (823)
Q Consensus       474 ~~~l~~~~p~~~~l~L~vwi~~~s~l----~~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia  547 (823)
                      ++..+++.|+++.+++++|+++|.|.    +.+++|+  ++|||+++|+++.+.   +|+.+|+++++|+.||+|||+|+
T Consensus        82 l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~~~sY~~~LaGyTa~iI~~~~~~---~p~~~f~~A~~R~~Ei~iGi~ca  158 (652)
T PRK10631         82 IIIATIRAPLLMILLCCIWAGFCTWISSLVRVENSYAWGLAGYTALIIVITIQP---EPLLTPQFAVERCSEIVIGIVCA  158 (652)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877653    4566676  999999999888554   78899999999999999999999


Q ss_pred             HHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 003403          548 IIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLP  627 (823)
Q Consensus       548 ~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~p  627 (823)
                      .+|+.+++|++..+.+.+++++++.+..++..+. + .   + .+.++.+..+.++..++.+++.+..+         .+
T Consensus       159 ~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~-l-~---~-~~~~~~~~~~~~L~~di~~le~lr~~---------~~  223 (652)
T PRK10631        159 ILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLC-I-K---H-GDKEEVDKAWGDLVRRTTALNGMRSN---------LM  223 (652)
T ss_pred             HHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH-h-c---c-CccchhhHHHHHHHHHHHHHHHHHHh---------hc
Confidence            9999999999999999999999999999999987 3 2   1 12335667889999999999999998         45


Q ss_pred             CChhhHHHHHHHHHHHHHHHH
Q 003403          628 FHGSCYENILASLSRMADLLL  648 (823)
Q Consensus       628 f~~~~y~~l~~~l~rL~d~l~  648 (823)
                      |+....++..+.+++|.+++.
T Consensus       224 ~e~~~~r~~~~~l~~L~~~~l  244 (652)
T PRK10631        224 MESSRWQRANRRLKALNTLSL  244 (652)
T ss_pred             cCCcchhhHHHHHHHHHHHHH
Confidence            556667777777777776665

>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family

Probab=99.97  E-value=1.6e-27  Score=284.00  Aligned_cols=557  Identities=17%  Similarity=0.120  Sum_probs=306.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhh-hcCCcccCCCcccCcchhhhhhhhh-c-cCchhHHHHHHHHHHHHHHHHhHhHHHHH
Q 003403           15 WRRRLGSALRTALACSIVGFTT-LYSPEHLRHMPAFPAFSYVTTILIL-S-DATLGDTLRGCWHALYATIQIMIPSILCL   91 (823)
Q Consensus        15 wr~~l~~a~R~alac~i~g~~~-~y~p~~~~~~~~fps~~yv~t~~i~-s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l   91 (823)
                      ++..+-.++|+.+|.+++..+. .+|         .|......+.=|+ + =....|..++-+..+..|..+...+-+..
T Consensus         4 ~~~~~~~~l~v~ia~~~~~~~~~~~g---------~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v   74 (701)
T TIGR01667         4 LNQKLVYCLPVFIALMGAELRIWWFG---------LLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLV   74 (701)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhC---------CccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457778899999987754421 122         2222222222222 1 22444555554444333433333333332


Q ss_pred             hhcCCCCCChhHHHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEEEEeeCCccccee--eehhhHHHHHHHHHHHHH
Q 003403           92 WLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVM--HPIHVASSTALGALASVV  169 (823)
Q Consensus        92 ~~ig~~~~~~~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~~~~~~~~t~~i~--~p~~v~~~~~~G~~~~~~  169 (823)
                      .+.-|..   +...+.++++||++.+-..-++-..+|++|.. ++.|.+..-++ +...|  +|    ....+|++--.+
T Consensus        75 ~ll~~~p---~~~~~~l~~~tf~~~mlga~G~r~~~I~f~~L-~~aiytml~~~-~~~~w~~~p----llll~GalwY~l  145 (701)
T TIGR01667        75 QLLFPKP---WLFPFLLTLLTFGFILLGALGQRYATIAFASL-LAAIYTMLGAG-EVPVWFIEP----LLILAGTLWYGL  145 (701)
T ss_pred             HHHhcch---HHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHH-HHHHHHHcCcc-cccHHHHHH----HHHHHHHHHHHH
Confidence            2221211   33445666778886666555655667777654 22222222222 23344  44    445668888888


Q ss_pred             HHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccchh-h--hhhHHHHH---HHHHHHHHHHHHHHhhccCc
Q 003403          170 AMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCA--QDNTA-A--LDSISEAK---SLFKAGAKQLLSIKDKQEGM  241 (823)
Q Consensus       170 a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~--~~~~~-a--~~~i~~~k---~l~~a~~~~l~~i~~~~~~~  241 (823)
                      ..++-|+.++.+-+|+.+.+.-+..++-|+.=.+-|--  .++.+ +  ...+.+.+   .+..+.+.++.+.+.     
T Consensus       146 ~sll~~~l~p~rp~q~~La~~y~~La~yL~aKa~lf~p~~~~~~~~~~~~l~~~n~~lv~~ln~~~~~ll~r~~~-----  220 (701)
T TIGR01667       146 LTLIWFLLFPNQPLQESLSRLYRELAEYLEAKSSLFDPDQHTDPEKALLPLAVRNGKVVDALNQCKQQLLMRLRG-----  220 (701)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence            77778888888889999888888888877765555521  11111 1  11122211   122233333322221     


Q ss_pred             cccccccccCCCCCCChHHHHHh---hhccccchHHHHhhCCC---CCcccccchhHHHHHHHHHHHHHHHH-Hhhcc--
Q 003403          242 LWERPQIRFLKPNYKDPREKLQE---LEIPIRGMELALTSCPS---FPVGMIDEDLRDVLQSLKAEIGLKLE-QAKCY--  312 (823)
Q Consensus       242 ~wE~~~~~~~~~~~~~~~~~~~~---L~~~Lrgm~~al~~~~~---~p~~i~~~~~~~~l~~l~~~is~~~~-~a~~~--  312 (823)
                                 +......+++-+   ..+||.  |.+..+..+   ..-..-+.++.....++.+..+...+ -+.+.  
T Consensus       221 -----------~~~~~~~~rll~~y~~A~di~--E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~  287 (701)
T TIGR01667       221 -----------NRTDPLTKRMLRYYFEAQDIH--ERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILL  287 (701)
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHH--HHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                       111111111111   122222  333333111   00000111111123334444444442 22111  


Q ss_pred             -cCCCCCCCcchhhhhHHhhhhhhccCCC-CCCCChhHHHH-hHHHhhccCCCC--CCcc-cccccccccccCCCCcccc
Q 003403          313 -ASFDATTAPETQKNCKDESLWSLKAISS-TEDVPASFFFY-CIKLLQDGLPVA--PNAE-FVVNETRETHTEGSSESQN  386 (823)
Q Consensus       313 -~~~~~~~~~e~~~~~~~~~l~~~~~~~~-~~~~p~~fF~F-~~~ll~~~~~~~--~~~~-~~~~~~~~~~k~~~~~~~~  386 (823)
                       .|.......+...+.+.+++++.++-.. +..+....+++ +++.+.++....  ++.. +...  .++.-...+|...
T Consensus       288 ~~~~~~~~~~~~~~~~l~~sl~~l~~~~~~~~~~~~l~~l~~nl~~i~~~l~~~~~~~~~~~~~~--~~~~l~~~~~~~~  365 (701)
T TIGR01667       288 RQPYYHRLRTERALEKQIAALEKIRQNQAPDDLLGQLGYLLDNLQSIDWQLARIARVLATAKPLY--ARDLLADKQPRGL  365 (701)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--hhhhhcccCchhh
Confidence             2222222233445556666654443222 22122222222 333333222110  0000 0000  0001111112111


Q ss_pred             cch-hhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHH
Q 003403          387 QNK-FKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTA  465 (823)
Q Consensus       387 ~~~-~~~~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTv  465 (823)
                      +.. ...++++.       +++..++||+|++++++++++++.+++++||||+++|+++|++|+.|+|++|+.+|++||+
T Consensus       366 ~~~~~~l~~~l~-------~~S~~fRhAlR~ala~~~a~~i~~~l~l~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl  438 (701)
T TIGR01667       366 KDILPRLKSHLT-------PESPLFRHAVRLSLVVMLGYAILMGTALHLGYWILLTTLFVCQPNYGATRLRLVQRIIGTV  438 (701)
T ss_pred             HHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            100 00113333       7889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Q 003403          466 MGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEA-GAISAVIGALLILGRKNYGTPSEFAIARITEASLGL  544 (823)
Q Consensus       466 lGav~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~~~~~Y~la-g~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGi  544 (823)
                      +|+++|+++..+++.. .. .+.++++.+++.+.-..++|+.+ .++|.++.+..-+   ...+.++++..|+.||+||+
T Consensus       439 ~G~llg~~l~~l~p~~-~~-~l~l~v~~~~~~~~~~~~~Y~~a~~fiT~~vll~~~l---~~~~~~~~a~~Rl~DTliG~  513 (701)
T TIGR01667       439 VGLVIGVALHFLIPSL-EG-QLTLMVITGVAFFAFRSKNYGWATVFITLLVLLCFNL---LGLDGEQYILPRLIDTLIGC  513 (701)
T ss_pred             HHHHHHHHHHHHcCcH-HH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh---cccchhHHHHHHHHHHHHHH
Confidence            9999999988776643 32 23333444333333333556632 3344332221111   11245689999999999999


Q ss_pred             HHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003403          545 ICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPN  622 (823)
Q Consensus       545 via~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~  622 (823)
                      +++++++.++||.|....+++.++++++...++++.+. .....++.++.+++..|++...+..+++..++.+..||.
T Consensus       514 ~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il-~~~~~~~~~~~~yr~aRr~a~~a~a~l~~~~~~m~~EP~  590 (701)
T TIGR01667       514 LIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLIL-SQYPQGKPDDLAYRIARRNAHNTDAALSTTLSNMMQEPA  590 (701)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999883 222223334445677788899999999999999999986

TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane

>TIGR01666 YCCS hypothetical membrane protein, TIGR01666

Probab=99.97  E-value=2.7e-27  Score=281.19  Aligned_cols=579  Identities=15%  Similarity=0.054  Sum_probs=314.4

Q ss_pred             hHHHHHHHHHHHHHHHHhh-hcCCcccCCCcccCcchhhhhhhhh-c-cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhc
Q 003403           18 RLGSALRTALACSIVGFTT-LYSPEHLRHMPAFPAFSYVTTILIL-S-DATLGDTLRGCWHALYATIQIMIPSILCLWLV   94 (823)
Q Consensus        18 ~l~~a~R~alac~i~g~~~-~y~p~~~~~~~~fps~~yv~t~~i~-s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~i   94 (823)
                      +.--++|..+|...+..+. .++-         +..+...+.=++ + =...-|..++-+..+..|..+...+.+..-+.
T Consensus         7 ~~~~~lri~ia~~~~~~~~~~~~~---------~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll   77 (704)
T TIGR01666         7 KVIYTIPIFIALNGAAVGIWFFDI---------SSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL   77 (704)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCc---------hhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567899999887654321 1231         222222211111 1 12333445554444334444433333332222


Q ss_pred             CCCCCChhHHHHHHHHHHHHHhcccCCchhhhhhhcccee--eeEEEEEeeCCcccceeeehhhHHHHHHHHHHHHHHHh
Q 003403           95 GPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIV--IVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAML  172 (823)
Q Consensus        95 g~~~~~~~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~--i~~v~~~~~~~~t~~i~~p~~v~~~~~~G~~~~~~a~l  172 (823)
                      -|..   +...+.++++||++.+-..-++=...||+|+..  ++.+++.-    +...++.  -.....+|++--.+..+
T Consensus        78 ~~~p---~lf~~~l~~~tf~~~mlga~G~Rya~Iaf~tLliaiytmlg~~----~~~~w~~--~pllll~GalwY~llsl  148 (704)
T TIGR01666        78 FGKP---WLFAVGLTVSTFGFIMLGAVGQRYATIAFGSLLVALYTMLGYI----EVNVWFI--QPVMLLCGTLWYSVVTL  148 (704)
T ss_pred             hcCc---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccc----ccchHHH--HHHHHHHHHHHHHHHHH
Confidence            1222   344456667777765554445445678887774  33333321    1112221  23556778888888888


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-h-hhhhHHH-------HHHHHHHHHHHHHHHHhhccCccc
Q 003403          173 LPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNT-A-ALDSISE-------AKSLFKAGAKQLLSIKDKQEGMLW  243 (823)
Q Consensus       173 lP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~-~-a~~~i~~-------~k~l~~a~~~~l~~i~~~~~~~~w  243 (823)
                      +-|+.++.+-+|+.+.+.-+..++-|+.=.+-|- +|+. + ....+..       +.-+-.+.+.++.+.+.       
T Consensus       149 ~~~~l~p~rp~q~~LA~~y~~La~yL~aka~lf~-p~~~~~~~~~~~~~a~~n~~lv~~ln~ar~~Ll~r~~~-------  220 (704)
T TIGR01666       149 IVHLFFPNRPVQENLAKAFCQLAEYLETKSCFFD-PDEVAEIQKKHLNFAMKNANVVTALNQVKTALLTRIRG-------  220 (704)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhCC-CCccchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-------
Confidence            8889999999999999888888888777665443 2221 0 0000111       11111122233222221       


Q ss_pred             cccccccCCCCCCChHH-HHHh--hhccccchHHHHhhCCCCC---cccccchhHHHHHHHHHHHHHHHH-Hhhc---cc
Q 003403          244 ERPQIRFLKPNYKDPRE-KLQE--LEIPIRGMELALTSCPSFP---VGMIDEDLRDVLQSLKAEIGLKLE-QAKC---YA  313 (823)
Q Consensus       244 E~~~~~~~~~~~~~~~~-~~~~--L~~~Lrgm~~al~~~~~~p---~~i~~~~~~~~l~~l~~~is~~~~-~a~~---~~  313 (823)
                               +......+ .++-  +.+|+.  |++..+-.+-+   -..-+.++-.-..++.+..+...+ .+.+   ..
T Consensus       221 ---------~~~~~~~~r~l~~y~~AqDih--Era~ssh~~y~~L~~~f~~sdvL~~~~~ll~~~a~ac~~la~ai~~~~  289 (704)
T TIGR01666       221 ---------QHRHPLTQRMLRYYFAAQDIH--ERASSSHFDYQQLTEHFKNSDLLFRFQRLLELQAQACKEITASIRLNK  289 (704)
T ss_pred             ---------CCCChHHHHHHHHHHHHHHHH--HHHHHcccCHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                     11111111 1110  122222  33333311100   000011111112233333333332 1111   12


Q ss_pred             CCCCCCCcchhhhhHHhhhhhhcc--CCCCCCCChhHHHH-hHHHhhccCCCC--CCcccccccccccccCCCCcccccc
Q 003403          314 SFDATTAPETQKNCKDESLWSLKA--ISSTEDVPASFFFY-CIKLLQDGLPVA--PNAEFVVNETRETHTEGSSESQNQN  388 (823)
Q Consensus       314 ~~~~~~~~e~~~~~~~~~l~~~~~--~~~~~~~p~~fF~F-~~~ll~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~~~~  388 (823)
                      |.......+...+.+.+++++.+.  ++..+.+.....++ ++..+.++....  ++..+.    .+++....+|+....
T Consensus       290 ~~~~~~~~~~al~~l~~sl~~~~~~~~~~~~~~~~L~~l~~nL~~i~~~L~~~~~~~~~~~----~~~~l~~~~~~~~~~  365 (704)
T TIGR01666       290 PYQHDKRVERALLGTLHSLDLYRAQHLNDQDLLIDLGTLLNNLQSINWQLRQLAQDTTVTE----QLAQLHDEQIHGLKN  365 (704)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccc----chhhhcccCccchhH
Confidence            222222223345555556554333  11121121122222 233222222210  111000    001111122221110


Q ss_pred             -hhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHH
Q 003403          389 -KFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMG  467 (823)
Q Consensus       389 -~~~~~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlG  467 (823)
                       ....++++.       +++..++||+|++++++++++++.+++++||||+++|+++|+||+.|+|++|+.+|++||++|
T Consensus       366 ~~~~l~~~l~-------~~S~~fRhAlRlalal~~a~~i~~~l~l~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG  438 (704)
T TIGR01666       366 IWARIFSHFT-------FESPLFRHAVRLSIVLFLGYAIIQFFGFNLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLG  438 (704)
T ss_pred             HHHHHHHhCC-------CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence             000123344       789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH
Q 003403          468 SVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEA-GAISAVIGALLILGRKNYGTPSEFAIARITEASLGLIC  546 (823)
Q Consensus       468 av~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~~~~~Y~la-g~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivi  546 (823)
                      +++|+++..++++......+.  +..+...+....++|+.+ .++|.++.+..-+    .++.++.+..|+.||+||+++
T Consensus       439 ~~lg~~ll~l~p~~~~~l~li--v~~~~l~~~~~~~~Y~~a~~fiT~~vll~~~l----~g~~~~~~~~Rl~dTlIG~~i  512 (704)
T TIGR01666       439 VVIGSPLLYFNPSLELQLVLV--VLTGVLFFAFRSNNYSFATFFITLLVLLCFNV----LGEGAAVLLPRLLDTLIGCAI  512 (704)
T ss_pred             HHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHH
Confidence            999999888876543222221  111222222234567644 4455443222111    124678999999999999999


Q ss_pred             HHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 003403          547 FIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFL  626 (823)
Q Consensus       547 a~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~  626 (823)
                      ++++.+++||.|.+..+++.++++++...++++.+. ...+.++.++.+++..|++......+++..++.+..||.    
T Consensus       513 Al~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl-~~~~~g~~~~~~yr~aRR~a~~~~a~l~~~~~~m~~EP~----  587 (704)
T TIGR01666       513 AWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHII-SQYQFGKSDDLKYRIARRNAHNYDAALSTTVSNMNNEPV----  587 (704)
T ss_pred             HHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHH-HHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence            999999999999999999999999999999998873 222224444456678899999999999999999999986    


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003403          627 PFHGSCYENILASLSRMADLLLFVAYKTEFLSQL  660 (823)
Q Consensus       627 pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~  660 (823)
                           .+++..+..-++......+.+++.+|..+
T Consensus       588 -----~~~~~~~~~~~ll~~~~~llsyisaLg~~  616 (704)
T TIGR01666       588 -----KYKAYLQKGFRLLKLNHSLLSYISALGAH  616 (704)
T ss_pred             -----cchhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                 23333444444444444555555555543

This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.

>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate

Probab=99.97  E-value=4.9e-29  Score=298.06  Aligned_cols=202  Identities=27%  Similarity=0.445  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 003403          409 SLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLP  488 (823)
Q Consensus       409 ~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~  488 (823)
                      +|+|++|+++|+++|+++++++++|+||||++||+||+||+.|.+++||++|++||++|+++|++++.++++.|.+.+++
T Consensus         1 ~~~~alr~~lA~~lAl~ia~~l~l~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~   80 (650)
T PF04632_consen    1 RLRFALRTALAAMLALYIAFWLQLPHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLA   80 (650)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh----cchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHH
Q 003403          489 LLPWIIFSSFLR----HSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATL  562 (823)
Q Consensus       489 L~vwi~~~s~l~----~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~  562 (823)
                      +++|+++|.|+.    ++++|+  ++|||+++|+++.+.   +|+++|+.+++|+.||++||+|+.+|+.++||.++++.
T Consensus        81 lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~---~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~P~~~~~~  157 (650)
T PF04632_consen   81 LALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVG---NPEQVFDLALWRVLEILIGILCATLVSMLFFPQRARRQ  157 (650)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccc---CccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence            999998776653    567777  899999999877554   78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003403          563 AKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEP  621 (823)
Q Consensus       563 l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP  621 (823)
                      +++++++.+++..+++....  +   +..++..   .+.++.+++.+++.+..++..|.
T Consensus       158 l~~~l~~~l~~~~~~~~~~l--~---~~~~~~~---~~~~l~~~~~~l~~~~~~~~~e~  208 (650)
T PF04632_consen  158 LRRRLAQRLADLARWLAALL--D---GDPDPAA---ERRRLARDIAALESLLSHARYES  208 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--C---CCcccch---HHHHHHHHHHHHHHHHhhccccC
Confidence            99999999999999999873  2   2212111   67889999999999999988883

It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane

>PRK11427 multidrug efflux system protein MdtO; Provisional

Probab=99.95  E-value=1.1e-23  Score=245.89  Aligned_cols=210  Identities=13%  Similarity=0.046  Sum_probs=156.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchh--
Q 003403          406 SLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLL-QKSV--  482 (823)
Q Consensus       406 ~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~-~~~p--  482 (823)
                      ++..++||+|+++|+++++++...+++++|||+++|+++|++|+.|.|.+|+.+|++||++|+++|+++..++ ++..  
T Consensus       347 Np~~~R~ALRt~lAa~La~~i~~~l~w~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~l~P~l~~~  426 (683)
T PRK11427        347 NPDYMRYALKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNI  426 (683)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Confidence            6778999999999999999999999999999999999999999999999999999999999999999888544 3221  


Q ss_pred             hHHHHHH--HHHHHH-HHHHhcchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 003403          483 NFRFLPL--LPWIIF-SSFLRHSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPA  557 (823)
Q Consensus       483 ~~~~l~L--~vwi~~-~s~l~~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~  557 (823)
                      ....+.+  ++|++. .+....+++|+  .+||+..++.+.-..   .|......+.+|+.+|++|++|+.+++.++||.
T Consensus       427 ~~Llllllp~~llg~wv~~~~~R~sYa~~~ag~T~~li~L~~l~---~p~~d~~~i~dRvl~tLLGi~iA~la~~lVwP~  503 (683)
T PRK11427        427 VELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFALATLENVF---GPVYDLVEIRDRALGILIGTVVSAVIYTFVWPE  503 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhccc---CcccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            1111122  222221 11111222454  666666555321112   233344567789999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003403          558 RAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPN  622 (823)
Q Consensus       558 ~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~  622 (823)
                      +.++.+++++.+.++++.++++...  . . ...+..+++..|+++..++++++.+.++...||.
T Consensus       504 ~~~~~L~~~l~~aLr~la~~l~~~~--~-~-~~~~~~~~~~~R~~l~~a~~~le~~~~rl~~Epq  564 (683)
T PRK11427        504 SEARTLPQKLAGALGMLSKVLRIPR--Q-Q-EVTALRTYLQIRIGLHAAFNACEEMCQRVALERQ  564 (683)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccc--c-c-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            9999999999999999988777531  1 0 0001122335678889999999999999999973

>COG1289 Predicted membrane protein [Function unknown]

Probab=99.85  E-value=9.8e-18  Score=201.68  Aligned_cols=205  Identities=21%  Similarity=0.269  Sum_probs=153.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 003403          405 PSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATN-RQATFKVANARAQGTAMGSVYGVICSFLLQKSVN  483 (823)
Q Consensus       405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps-~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~  483 (823)
                      +++..++|++|+++++++++.+..++++++|||+++|+++|++|+ .|++.+++.+|+.||++|+++|.++.++.+....
T Consensus       350 ~~~~alr~a~R~ala~~~~~~~~~~~~w~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~~  429 (674)
T COG1289         350 LNSPALRHALRTALALLLGYAFWLALGWPHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLIP  429 (674)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            678899999999999999999999999999999999999999999 9999999999999999999999998877655433


Q ss_pred             H-HHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHH
Q 003403          484 F-RFLPLLPWIIFSSFL-RHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAAT  561 (823)
Q Consensus       484 ~-~~l~L~vwi~~~s~l-~~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~  561 (823)
                      . ..+.++.-+++...+ ..++.|...+.+.. +.+...+   .+.++.++...|+.++.+|+++++++.+++||.+...
T Consensus       430 ~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~-v~~~~~l---~~~~~~~~~~~r~~d~~iG~lIa~~~a~~v~~~~~~~  505 (674)
T COG1289         430 GLLLLLLLAALLFAAGIRLAKYRLATLGITLL-VLFLVGL---LGSNGPDYDLPRFLDTLLGSLIALALAFLVWPLWRPR  505 (674)
T ss_pred             hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHH---cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2 222222222222223 23444443222222 2222222   3457779999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003403          562 LAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPN  622 (823)
Q Consensus       562 ~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~  622 (823)
                      .+++...+.++..++.+..+.  +   +.....   . +.......+.+......+..||.
T Consensus       506 ~l~~~~~~~l~~~~~~l~~~~--~---~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~p~  557 (674)
T COG1289         506 RLRRALRRALRALRRDLASAL--S---REPTGR---E-RRFEHNADDALSQLLNLMASEPA  557 (674)
T ss_pred             chhHHHHHHHHHHHHHHHHHH--h---cCCccc---h-hhhhhccHHHHHHHHHHHhcCCc
Confidence            999999999999999999884  2   111111   2 33344445556677777777875

>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate

Probab=99.85  E-value=1.9e-17  Score=198.38  Aligned_cols=503  Identities=16%  Similarity=0.162  Sum_probs=284.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhccCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCC
Q 003403           18 RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPD   97 (823)
Q Consensus        18 ~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~   97 (823)
                      ++.+|+|+++||.++-.+..+--      +..|.|..+++++| +..+.|.++.-++.-+.||+.|++.+++...+.+..
T Consensus         1 ~~~~alr~~lA~~lAl~ia~~l~------l~~p~WA~~tv~iV-~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~   73 (650)
T PF04632_consen    1 RLRFALRTALAAMLALYIAFWLQ------LPHPYWAAMTVFIV-SQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQS   73 (650)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhC------CCCcHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            35689999999999766644332      23556655555544 889999999999999999999999998887655433


Q ss_pred             CCChhH-HHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEE--EEeeCCcccceeeehhhHHHHHHHHHHHHHHHhcC
Q 003403           98 RFTADV-AAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVG--TVVHGAKTGIVMHPIHVASSTALGALASVVAMLLP  174 (823)
Q Consensus        98 ~~~~~~-~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~--~~~~~~~t~~i~~p~~v~~~~~~G~~~~~~a~llP  174 (823)
                      +.-... ..+|+++.+++..+-.+..  .--+-|+..+...|+  .+.||.+  ....-+.=...+++|++++.++..+-
T Consensus        74 p~l~~~~lal~i~~c~~~~~~~~~~~--~y~~~lag~T~~iv~~~~~~~p~~--~f~~a~~R~~ei~iGi~~a~~v~~l~  149 (650)
T PF04632_consen   74 PLLFLLALALWIGLCLYLSLLDRNFR--SYAFMLAGYTAAIVALPAVGNPEQ--VFDLALWRVLEILIGILCATLVSMLF  149 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhcccCccH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            322112 2255555555533222212  233334444433332  3335543  11112224467999999999998889


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhccCccccccccccCCCC
Q 003403          175 YPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPN  254 (823)
Q Consensus       175 ~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a~~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~~~~~  254 (823)
                      +|+-+.+++++.+++..+++.+.+....+.--.++.        ..+.+...    +.+++...+...+|....+-....
T Consensus       150 ~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~--------~~~~l~~~----~~~l~~~~~~~~~e~~~~~~~~~~  217 (650)
T PF04632_consen  150 FPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAA--------ERRRLARD----IAALESLLSHARYESPRLRRRRRR  217 (650)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch--------HHHHHHHH----HHHHHHHHhhccccCchhHHHHHH
Confidence            999999999999999999999888776665544322        11122222    223344445555665432211122


Q ss_pred             CCChHHHHHhhhccccchHHHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCcchhhhhHHhhhhh
Q 003403          255 YKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWS  334 (823)
Q Consensus       255 ~~~~~~~~~~L~~~Lrgm~~al~~~~~~p~~i~~~~~~~~l~~l~~~is~~~~~a~~~~~~~~~~~~e~~~~~~~~~l~~  334 (823)
                      .......+.++...++.++..+......+    +....+ +.++.+++.....      +- .   .+.....+.+   +
T Consensus       218 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~~~-l~~~l~~la~~~~------~~-~---~~~~~~~l~~---~  279 (650)
T PF04632_consen  218 LRALQARLLRLLALLRSLARRLAALPDAP----DAARLE-LAALLEELAAAAQ------RA-D---LDQAAAALRQ---R  279 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccc----hhhHHH-HHHHHHHHhhccc------cc-c---cHHHHHHHHH---H
Confidence            22222233333333333333333222111    111111 4444444444100      00 0   0011111221   1


Q ss_pred             hccCCC--C-CCCChhHHHHhHHHhhccCCCCCCcccccccccccccCCCCcccccchhhhcccccccccccCCChHHHH
Q 003403          335 LKAISS--T-EDVPASFFFYCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLV  411 (823)
Q Consensus       335 ~~~~~~--~-~~~p~~fF~F~~~ll~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~  411 (823)
                      .....+  . ....-......+....++........+..     .+....   +....+   ....       .....++
T Consensus       280 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~~~~l-----~~~~~~---~~~~~~---~~~~-------d~~~A~~  341 (650)
T PF04632_consen  280 IAALRPAASDDSDWQRALLARLADLLRDLIQALRSLRAL-----RRPIPA---RRPFRF---PLHR-------DWPLALR  341 (650)
T ss_pred             HhhcccccccchhhHHHHHHHHHHHHHhHHHHHHHHHhh-----hccccc---cccccc---cccc-------chHHHHH
Confidence            111111  0 00000111111111111111100000000     000000   000000   1111       2356789


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhh--ccChhHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhch--hhHHH
Q 003403          412 FALKCSLSLGLAVILGLMYNKENGYWSGLTIAISF--ATNRQATFKVANARAQGTAMGSVYGVICSF-LLQKS--VNFRF  486 (823)
Q Consensus       412 ~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~--qps~GaT~~k~~~Ri~GTvlGav~g~~~~~-l~~~~--p~~~~  486 (823)
                      +++|+++++++++++-...|++.|.-+++++.|++  ..+.+....+...++.|+++|+++|+++.+ +.|+.  .....
T Consensus       342 ~alra~la~~~~~l~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~f~~L~  421 (650)
T PF04632_consen  342 NALRAFLAILIAGLFWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLDGFPLLA  421 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHH
Confidence            99999999999999999999999999998888887  788889999999999999999999998877 44443  22334


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHH
Q 003403          487 LPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRK-NYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKA  565 (823)
Q Consensus       487 l~L~vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~-~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~~  565 (823)
                      +++++.+++..+......+...|.-. .+.|+...+.. .+...+....++...+++|++++.++..+++|.++....++
T Consensus       422 l~l~~~l~~~~~~~~~p~~~~~g~~~-~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~li~p~~~~~~~rr  500 (650)
T PF04632_consen  422 LVLAPFLFLGGLLMARPRTAYIGLGF-AVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFRLIRPFSPEWRRRR  500 (650)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHH-HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            44444444445544333344333322 22344444332 23556688899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 003403          566 QLAQSLQALQDGIKD  580 (823)
Q Consensus       566 ~l~~~L~~l~~~l~~  580 (823)
                      .+....+++.+....
T Consensus       501 l~~~~~~~l~~~~~~  515 (650)
T PF04632_consen  501 LLRALRRDLARLARG  515 (650)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            888888887765543

It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane

>PRK11427 multidrug efflux system protein MdtO; Provisional

Probab=99.82  E-value=2.1e-18  Score=201.87  Aligned_cols=166  Identities=15%  Similarity=0.082  Sum_probs=145.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003403          405 PSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNF  484 (823)
Q Consensus       405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~  484 (823)
                      |++..+.  +|++++++++++++..+++|+++|++.++++|+||..|.+..|+++|++||++|+.++++++.++.+.|.+
T Consensus        27 P~r~~~~--~r~~~a~~L~l~i~~~l~~P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v~~P~l  104 (683)
T PRK11427         27 PGRVPQT--LQLWVGCLLVILISMTFEIPFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGYPLI  104 (683)
T ss_pred             CChHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            4444444  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-cch-hhH--HHHHHHHHH--HHHHHhccCCCCChHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 003403          485 RFLPLLPWIIFSSFLR-HSR-MYE--EAGAISAVI--GALLILGRKNYGTPSEFAIARITE-----ASLGLICFIIVEIL  553 (823)
Q Consensus       485 ~~l~L~vwi~~~s~l~-~~~-~Y~--lag~~~alI--~~~~vlg~~~~~~~~~~A~~Rv~e-----i~IGivia~~V~~l  553 (823)
                      ..+++++|++.+.|+. .+| .|.  ++||+ ++|  +|+.+.       +..-.+.|.++     |.+||+|+++|+.+
T Consensus       105 ~~l~ialw~~~~lyl~r~~rl~yvf~lag~t-aii~~~f~~v~-------~~~E~~~R~~e~~w~~i~~gi~ca~lV~~l  176 (683)
T PRK11427        105 RLIIAGPILMGCMFLMRTHRLGLVFFAVAIV-AIYGQTFPAML-------DYPEVVVRLTLWCIVVGLYPTLLMTLIGVL  176 (683)
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HHHHhhccccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999888886 455 565  88888 466  444332       12333899999     99999999999999


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHH
Q 003403          554 FQPARAATLAKAQLAQSLQALQDGIKD  580 (823)
Q Consensus       554 v~P~~a~~~l~~~l~~~L~~l~~~l~~  580 (823)
                      +||++.++.++.++++++++..+++.+
T Consensus       177 ~~P~~~~~~l~~~l~~~l~~a~~~l~~  203 (683)
T PRK11427        177 WFPSRAINQMHQALNDRLDDAISHLTD  203 (683)
T ss_pred             hCcCChHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999988877664

>COG1289 Predicted membrane protein [Function unknown]

Probab=99.68  E-value=7.8e-15  Score=176.69  Aligned_cols=175  Identities=22%  Similarity=0.267  Sum_probs=151.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003403          405 PSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNF  484 (823)
Q Consensus       405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~  484 (823)
                      +.+..|+|++|+.+|+++++++++.+++++|+|+++|++||++|..|+.++|+++|++||++|..+++++..++.+.|++
T Consensus         6 ~~~~~~~~~lr~~~a~~la~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~~p~~   85 (674)
T COG1289           6 PTNADWRYALRTFLAACLALALAFLLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQEPWL   85 (674)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHccCcHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999888889998


Q ss_pred             HHHHHHHHHHHHHHH----hcchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCch
Q 003403          485 RFLPLLPWIIFSSFL----RHSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPAR  558 (823)
Q Consensus       485 ~~l~L~vwi~~~s~l----~~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~  558 (823)
                      ..+++.+|+++++..    +....|+  ++|||..+++ +... ...|...++.++.|+.++.+|++|+-.+....+|.+
T Consensus        86 f~~~~~~~~~l~~~~~~~~~~~~~~a~~la~yT~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~  163 (674)
T COG1289          86 FLLLLTLWLGLCTAIGSLYRTIASYAFVLAGYTALIIG-PAPA-IPEPELLFDGAVWRVVEILLGILCAPVVPLLESPSR  163 (674)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc-cccc-cccHHHHHHHHHHHHHHHHHHHHHhccchHhhhHHH
Confidence            889999999766543    3445555  9999998876 3212 114455889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 003403          559 AATLAKAQLAQSLQALQDGIKDI  581 (823)
Q Consensus       559 a~~~l~~~l~~~L~~l~~~l~~~  581 (823)
                      ....+.+.++...+....+....
T Consensus       164 ~~~~L~~~l~~~~~~~~~~~~~~  186 (674)
T COG1289         164 LYQALANYLEAKSRLFAQLLLAA  186 (674)
T ss_pred             HHHHHHHHHHHHHhccchhhhhh
Confidence            99999999888887766666554

>COG4129 Predicted membrane protein [Function unknown]

Probab=99.65  E-value=9.3e-14  Score=152.14  Aligned_cols=199  Identities=18%  Similarity=0.167  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 003403          408 ESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFL  487 (823)
Q Consensus       408 ~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l  487 (823)
                      ......+|+++|+++|++++.+++++.|..|++|+++.++|+...+++++.+|+.|+++|+++|+++..++++.|....+
T Consensus         8 ~ig~RtlKt~ia~~La~~ia~~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v   87 (332)
T COG4129           8 KIGARTLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGV   87 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHH
Q 003403          488 PLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQL  567 (823)
Q Consensus       488 ~L~vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~~~l  567 (823)
                      .+.+.+..+..+...-.-.    +..++...++.+.  .++. .....|+.++++|+.++++|+.+++|..  ..++...
T Consensus        88 ~~~i~i~~~~~~~~~~g~~----~~~~~~~~ii~~~--~~~~-~~~~~r~l~~~vG~~~a~lvn~~~~~~~--~~~~~~~  158 (332)
T COG4129          88 VLLIIIPLLVLLKLENGVV----PITVGVLHILVAA--MIPL-FLIFNRFLLVFVGVGVAFLVNLVMPPPD--YELKLYR  158 (332)
T ss_pred             HHHHHHHHHHHHhcccchh----HHHHHHHHHHHHc--ccch-hHHHHHHHHHHHHHHHHHHHhhhcCCch--HHHHHHH
Confidence            6666555555554211111    1111111122221  1222 3334499999999999999999999876  4444444


Q ss_pred             HHHHHHHHHHHHHHh--hhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 003403          568 AQSLQALQDGIKDIV--LFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEME  620 (823)
Q Consensus       568 ~~~L~~l~~~l~~~~--L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~E  620 (823)
                      ..........+....  +.+ .    ++...+.....+.+.+.++.++....+.|
T Consensus       159 ~kv~~~~~~il~~~~~~l~~-~----~~~~~~~~~~~l~~~~~~~~~l~~~~~~e  208 (332)
T COG4129         159 AKVEAILASILWEVASYLRD-T----ESAELDKDLEALLRLLIKLAKLIAYRREE  208 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-C----CccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444443332  211 1    11222333445555566666666665556

>PF13515 FUSC_2: Fusaric acid resistance protein-like

Probab=99.56  E-value=8.7e-14  Score=132.17  Aligned_cols=126  Identities=21%  Similarity=0.393  Sum_probs=91.9

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Q 003403          422 LAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRH  501 (823)
Q Consensus       422 LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~~  501 (823)
                      +|.+++.+++.+|++|+++|++++++|+.|++.+++.+|++||++|+++|.++..+.++. ....+.+.++.+...++. 
T Consensus         1 ~a~~i~~~~~~~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-   78 (128)
T PF13515_consen    1 LAFFIAQWLGLPHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGN-YVLILIVFLLMFLIFYFL-   78 (128)
T ss_pred             ChhhHHHHHcCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHH-
Confidence            367888999999999999999999999999999999999999999999999999887764 333333333333333333 


Q ss_pred             chhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 003403          502 SRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIV  550 (823)
Q Consensus       502 ~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V  550 (823)
                      .+.|.  ..+.+..++...... +.+++++.+.+..|+.++++|+++++++
T Consensus        79 ~~~y~~~~~~~t~~~v~~~~~~-~~~~~~~~~~~~~R~~~v~iG~~i~~~v  128 (128)
T PF13515_consen   79 SKNYAIAQIFITVMVVLLFSLI-HPGNGDPWQLALERILDVLIGILIALLV  128 (128)
T ss_pred             hccHHHHHHHHHHHHHHHHHHH-ccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence            34444  333333332222221 1234667899999999999999999874

>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=99.54  E-value=2.8e-13  Score=131.91  Aligned_cols=137  Identities=15%  Similarity=0.226  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 003403          411 VFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLL  490 (823)
Q Consensus       411 ~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~  490 (823)
                      ...+|+++|+.++++++.+++.++|++|.+++++.+||+...|++.+.+|+.|+++|+++|+++..+++.+|....+.+.
T Consensus         5 ~r~iKtaiA~~la~~ia~~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~~l~v~   84 (141)
T PF06081_consen    5 MRTIKTAIAAFLAILIAQLLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSIGLAVI   84 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999888887776666665


Q ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003403          491 PWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILF  554 (823)
Q Consensus       491 vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv  554 (823)
                      +.+..+..++.......+..+.    ..+..   .++..+..+.+|+.++++|+.++++||+++
T Consensus        85 i~i~~~~~l~~~~~~~~a~v~~----~~i~~---~~~~~~~~~~~r~l~t~iG~~va~lVN~~~  141 (141)
T PF06081_consen   85 ITIPICNWLKLGEGIIVAAVTF----VHILL---SGSDSFSYALNRVLLTLIGIGVALLVNLLM  141 (141)
T ss_pred             HHHHHHHHhCCCCeehHHHHHH----HHHHH---cCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5555555666443222222221    11222   233455669999999999999999999864

>KOG4711 consensus Predicted membrane protein [General function prediction only]

Probab=99.52  E-value=2.7e-14  Score=165.93  Aligned_cols=287  Identities=15%  Similarity=0.119  Sum_probs=194.6

Q ss_pred             cccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHH
Q 003403          393 KLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNK-----ENGYWSGLTIAISFATNRQATFKVANARAQGTAMG  467 (823)
Q Consensus       393 ~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l-----~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlG  467 (823)
                      +..|.    .-..++++..|++|+++|..|..++.+.=..     .+..|+++|+++|+.+++|+|+.|+++|.+||+.+
T Consensus        80 ~~~~~----~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~tL~a  155 (625)
T KOG4711|consen   80 RNLWE----VGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVGTLSA  155 (625)
T ss_pred             hhhhh----cCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHHHhhh
Confidence            35666    2336889999999999999999877553221     67889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc---hhhHHHHHHHHHH--HHHHHHh-----cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHH
Q 003403          468 SVYGVICSFLLQK---SVNFRFLPLLPWI--IFSSFLR-----HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARI  537 (823)
Q Consensus       468 av~g~~~~~l~~~---~p~~~~l~L~vwi--~~~s~l~-----~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv  537 (823)
                      +.+|+.+..+...   .....+++..+++  ...+|++     .++.|+...+...+. +..+.+- ..+...+.|..|+
T Consensus       156 g~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~y~y~~lIf~ltf~-l~~vs~~-r~~~~~~~a~~Rl  233 (625)
T KOG4711|consen  156 GGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKAYEYGFLIFILTFC-LVEVSGY-RSDYFLELALQRL  233 (625)
T ss_pred             hhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhccchhhhHHHHHhh-hheeccc-chhHHHHHHHHHH
Confidence            9999866654322   2233444444554  2344544     235676322222111 1122221 1256779999999


Q ss_pred             HHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHH------HhhhhhhcCCC------Ch----------hH
Q 003403          538 TEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKD------IVLFADQKGKA------TP----------TA  595 (823)
Q Consensus       538 ~ei~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~------~~L~~~~~~~~------~~----------~~  595 (823)
                      ..|.+|..++.+|+.++||.|++..+++..+..+...+..++.      ..  .+.....      +.          +.
T Consensus       234 ~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~--~~~y~~~~~i~~~s~~~~~~s~~~~~~  311 (625)
T KOG4711|consen  234 LLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCF--NGEYFCVEKIEILSIPTFYKSAAWYPL  311 (625)
T ss_pred             HHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhh--cchheeehhhhhcchhhhhhhcchhhh
Confidence            9999999999999999999999999999998888888887774      11  1111100      00          01


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhh
Q 003403          596 LRDKQKRLKSHINELDKFIAEAEMEPNF---WFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQ  672 (823)
Q Consensus       596 ~~~~~~~L~~~L~~L~~ll~~A~~EP~~---w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~  672 (823)
                      ++. +.........++.+...|.|||++   |...||+.+|.++...+|.+.-.+.++..++..=   .+   .+ +++.
T Consensus       312 ~~G-y~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~---~q---ap-~~~~  383 (625)
T KOG4711|consen  312 YNG-YWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSE---IQ---AP-RDLR  383 (625)
T ss_pred             hcc-hhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhccccccc---cc---Cc-HHHH
Confidence            111 233344446688999999999998   4568999999999999998887777665554221   11   11 2233


Q ss_pred             hhhHhHHHHHHHHHhhhhhhhHH
Q 003403          673 EPINDDLELFKEKVGHSLKCFEE  695 (823)
Q Consensus       673 ~~v~~~~~~~~~~v~~~l~~l~~  695 (823)
                      ...+..|+....-++..++.+.+
T Consensus       384 ~~~~~~l~rva~e~~kvl~~~~~  406 (625)
T KOG4711|consen  384 NKFRLTLRRVAIEISKVLRPFRA  406 (625)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH
Confidence            44555666555556666666543

>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional

Probab=99.35  E-value=5.4e-08  Score=115.72  Aligned_cols=478  Identities=13%  Similarity=0.102  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhc---------cCchhHHHHHHHHHHHHHHHHhHhHHH
Q 003403           19 LGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILS---------DATLGDTLRGCWHALYATIQIMIPSIL   89 (823)
Q Consensus        19 l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s---------~~t~G~~l~~~~~~l~~t~~~~~~s~l   89 (823)
                      +-+|+|+++|+.++=.+..+-      .+..|-|..++++ |++         ...-|..+.-.+.-+.||+.|++.+++
T Consensus         9 ~~falk~~lA~~LAL~ia~~l------~L~~P~WA~~Tv~-iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~   81 (652)
T PRK10631          9 LRFAVKLAFAIVLALFVGFHF------QLETPRWAVLTAA-IVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALV   81 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC------CCCCccHHHHHHH-HHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            346788888777754432211      2335666666644 444         457788888888889999999888888


Q ss_pred             HHhhcCCCCCChhH-HHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEE--EEeeCCcccceee-ehhhHHHHHHHHH
Q 003403           90 CLWLVGPDRFTADV-AAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVG--TVVHGAKTGIVMH-PIHVASSTALGAL  165 (823)
Q Consensus        90 ~l~~ig~~~~~~~~-~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~--~~~~~~~t~~i~~-p~~v~~~~~~G~~  165 (823)
                      ..+..+..+.--.. ..+|+++.+++..+-..  +-.--+.|+..+...|+  ..-||..   ++. =+.=..-+++|++
T Consensus        82 l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~--~~sY~~~LaGyTa~iI~~~~~~~p~~---~f~~A~~R~~Ei~iGi~  156 (652)
T PRK10631         82 IIIATIRAPLLMILLCCIWAGFCTWISSLVRV--ENSYAWGLAGYTALIIVITIQPEPLL---TPQFAVERCSEIVIGIV  156 (652)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhccCCchH---HHHHHHHHHHHHHHHHH
Confidence            87765433321111 22444454444332222  11334555554443332  2233432   211 0011234899999


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhccCccccc
Q 003403          166 ASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWER  245 (823)
Q Consensus       166 ~~~~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a~~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~  245 (823)
                      ++.++..+.+|+.+...+++..++...++.+.+......   .++.+  ..-.+.+.+.+.     -.++.......||.
T Consensus       157 ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~---~~~~~--~~~~~~~L~~di-----~~le~lr~~~~~e~  226 (652)
T PRK10631        157 CAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH---GDKEE--VDKAWGDLVRRT-----TALNGMRSNLMMES  226 (652)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc---Cccch--hhHHHHHHHHHH-----HHHHHHHHhhccCC
Confidence            999998999999999999999999998888777644322   12111  001222222221     13344445555664


Q ss_pred             cccccCCCCCCChHHHHHhhhccccc-hHHHHhh----CCCCCcccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 003403          246 PQIRFLKPNYKDPREKLQELEIPIRG-MELALTS----CPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTA  320 (823)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~L~~~Lrg-m~~al~~----~~~~p~~i~~~~~~~~l~~l~~~is~~~~~a~~~~~~~~~~~  320 (823)
                      .-       .....+.+.+|...+-. ...|++.    .+ .|     +...+.+..+.++....               
T Consensus       227 ~~-------~r~~~~~l~~L~~~~l~l~~~al~~~l~~~~-~~-----~~~~~~l~~ll~~~~~~---------------  278 (652)
T PRK10631        227 SR-------WQRANRRLKALNTLSLTLITQACETYLIQNT-RP-----ELITDTFRELFDTPVET---------------  278 (652)
T ss_pred             cc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-----ccchHHHHHHHhccccc---------------
Confidence            32       22222333333211111 1112211    11 01     11111122222211000               


Q ss_pred             cchhhhhHHhhhhhhccCCCCCCCCh--hHHH------HhHHHhhccCCCCCCcccccccccccccCCCCcccccchhhh
Q 003403          321 PETQKNCKDESLWSLKAISSTEDVPA--SFFF------YCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKC  392 (823)
Q Consensus       321 ~e~~~~~~~~~l~~~~~~~~~~~~p~--~fF~------F~~~ll~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  392 (823)
                      +.+..+.+........+.. .+++|.  -.|.      ++......+..........      .. ....+.        
T Consensus       279 ~~~~~~~l~~lr~~~~~~~-~~~~~~~l~~~~~~~~r~~~L~~~~~~~~~~~~~~~~------~~-~~~~~~--------  342 (652)
T PRK10631        279 PQDVHKQLKRLRRVIAWTG-ERETPVTIYSWVGAATRYLLLKKGVISNTKISATEEE------IL-QGEPVV--------  342 (652)
T ss_pred             hhhHHHHHHHHHHHhhhcc-ccccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhh------hc-cccccc--------
Confidence            0111111111111111100 111111  1111      1111111111100000000      00 000000        


Q ss_pred             cccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhc--cChhHHHHHHHHHHHHHHHHHHH
Q 003403          393 KLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFA--TNRQATFKVANARAQGTAMGSVY  470 (823)
Q Consensus       393 ~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~q--ps~GaT~~k~~~Ri~GTvlGav~  470 (823)
                      +..|.       ...+....++|++++++++..+=.+-|++.|.-+++-+.|++-  .+...-...+.+=+.||++|..+
T Consensus       343 ~~~~~-------~~h~A~~~glRa~~ai~~~~~fWI~TgW~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~  415 (652)
T PRK10631        343 KVESA-------ERHHAMINGWRTTLATALGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPL  415 (652)
T ss_pred             ccccc-------hHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence            01111       2234678889999999999998888999999998865555442  22223344455556788888888


Q ss_pred             HHHHHHH-hhch---hhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHHHHHH
Q 003403          471 GVICSFL-LQKS---VNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNY-GTPSEFAIARITEASLGLI  545 (823)
Q Consensus       471 g~~~~~l-~~~~---p~~~~l~L~vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~~~-~~~~~~A~~Rv~ei~IGiv  545 (823)
                      |+++.++ .|+.   .....+++.+.++++..+...+.++-.|+...++   .+++..++ .-.+...++.-...++|++
T Consensus       416 a~l~~f~vLP~i~~~f~lL~laLap~~~~~g~~~~~~~~~~lg~~i~f~---~~l~l~n~~~~d~~~FlN~alA~v~Gi~  492 (652)
T PRK10631        416 GALYFMVIIPNTQQSMLLLCISLGVLGFFIGIEVQKRRLGSLGALASTI---NILVLDNPMTFHFSQFLDSALGQIVGCF  492 (652)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HHhccCCCCCcCHHHHHHHHHHHHHHHH
Confidence            7766653 3442   2333444444444444444333444233333222   33332232 4456777888889999999


Q ss_pred             HHHHHHHHccCchhHHHHHHHHHHHHH
Q 003403          546 CFIIVEILFQPARAATLAKAQLAQSLQ  572 (823)
Q Consensus       546 ia~~V~~lv~P~~a~~~l~~~l~~~L~  572 (823)
                      ++.++..++.|.......++-+.+...
T Consensus       493 ~A~l~f~lirp~~~~r~~rrL~~~~~~  519 (652)
T PRK10631        493 LALIVILLVRDNSRDRTGRVLLNQFVS  519 (652)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999888888666655555544433

>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana []

Probab=99.25  E-value=8.3e-11  Score=132.33  Aligned_cols=254  Identities=17%  Similarity=0.174  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhccCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcC--
Q 003403           18 RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVG--   95 (823)
Q Consensus        18 ~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig--   95 (823)
                      |+-+++|.++|.+|++.....+|.+  +.+.=.+..=+.|++++=..|+|.++.-+.....||+.+.+++++..++..  
T Consensus        10 r~~~~lkvglal~lvsl~~~~~~~~--~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~   87 (406)
T PF11744_consen   10 RVIHSLKVGLALTLVSLLYFVGPLY--DGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLS   87 (406)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhh--hhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6788999999999999887788754  222223545555666666899999999999999999999888888877641  


Q ss_pred             CCCCChhHHHHHHHHHHHHHhcccCCchhhhhhhccc------eeeeEEEEEeeCCcccceeeehh-hHHHHHHHHHHHH
Q 003403           96 PDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQ------IVIVCVGTVVHGAKTGIVMHPIH-VASSTALGALASV  168 (823)
Q Consensus        96 ~~~~~~~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~------~~i~~v~~~~~~~~t~~i~~p~~-v~~~~~~G~~~~~  168 (823)
                      ++....-+....+++.+++..|..+.|.+.+|+..|.      ..++-+..|    +++..++-.+ =....++|++.|+
T Consensus        88 g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~y----r~~~~~~~A~~R~~~I~iGv~i~l  163 (406)
T PF11744_consen   88 GDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGY----RTDEFLMLAVWRLLTIVIGVAICL  163 (406)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecC----CcchHHHHHHHHHHHHHHHHHHHH
Confidence            1111111333555555565666666666666655433      334444444    3333333222 2344699999999


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh-hhhHHHHHHHHH---HHHHHHHHHHhhccCcccc
Q 003403          169 VAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAA-LDSISEAKSLFK---AGAKQLLSIKDKQEGMLWE  244 (823)
Q Consensus       169 ~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a-~~~i~~~k~l~~---a~~~~l~~i~~~~~~~~wE  244 (823)
                      +..++-||.+|..++++......+.+.+.+...++.|+..+..+- ..--..-+.+.+   +...--++.+++...+.||
T Consensus       164 ~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WE  243 (406)
T PF11744_consen  164 LVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWE  243 (406)
T ss_pred             HHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhc
Confidence            999999999999999999999999999999999999997543320 000000001111   1111124556677889999


Q ss_pred             ccccccC-CCCCCChHHHHHhhhccccchHHHHhh
Q 003403          245 RPQIRFL-KPNYKDPREKLQELEIPIRGMELALTS  278 (823)
Q Consensus       245 ~~~~~~~-~~~~~~~~~~~~~L~~~Lrgm~~al~~  278 (823)
                      +.--+|. +.-|++|.|. +.+..+-.-+=.|+..
T Consensus       244 P~HG~f~f~~Pw~~Y~ki-g~~lR~cay~v~AL~g  277 (406)
T PF11744_consen  244 PPHGRFRFRHPWKQYLKI-GALLRHCAYCVEALHG  277 (406)
T ss_pred             ccccCCccCCcHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            8864444 4445666553 3333333333344444

; GO: 0010044 response to aluminum ion

>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi

Probab=99.19  E-value=1.5e-07  Score=109.00  Aligned_cols=249  Identities=14%  Similarity=0.187  Sum_probs=170.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHH------HhcCCCCcHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003403          405 PSLESLVFALKCSLSLGLAVILG------LMYNKENGYWSGLTIAISF-ATNRQATFKVANARAQGTAMGSVYGVICSFL  477 (823)
Q Consensus       405 ~~~~~l~~AlK~slA~~LA~~ia------~~~~l~~p~WA~lTv~IV~-qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l  477 (823)
                      .|.+.++.-+|++++..+++.+.      .++| ..+|.+.+..+++. .-.+|..+...+.=++|+.+|..+|++..+.
T Consensus        11 ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g-~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~   89 (459)
T PF10337_consen   11 LDRRSLKIMFKCWIAPWIALILCQIPPVARWLG-TAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYI   89 (459)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhc-chhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999998764      3577 78888886555543 3467889999999999999999999887764


Q ss_pred             hh----c----------------h----hhH---------------HHHHHHHHHH----HHHHHh--cchhhHHHHHHH
Q 003403          478 LQ----K----------------S----VNF---------------RFLPLLPWII----FSSFLR--HSRMYEEAGAIS  512 (823)
Q Consensus       478 ~~----~----------------~----p~~---------------~~l~L~vwi~----~~s~l~--~~~~Y~lag~~~  512 (823)
                      ..    +                .    +..               ...+.++|++    +..++|  .|+ +... .+.
T Consensus        90 a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~-~~~~-~I~  167 (459)
T PF10337_consen   90 AVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPK-LNFP-VIF  167 (459)
T ss_pred             HHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcc-hHHH-HHH
Confidence            42    1                0    110               0144455553    334455  333 3321 222


Q ss_pred             HHHHHH--HHhccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHh--hhhhh
Q 003403          513 AVIGAL--LILGRKNYG-TPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIV--LFADQ  587 (823)
Q Consensus       513 alI~~~--~vlg~~~~~-~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~--L~~~~  587 (823)
                      ..|...  ...|...|. ....++..=+.-..+|+++++++++++||...+..+.+.+.+.++.+.+.++...  +.+..
T Consensus       168 ~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~  247 (459)
T PF10337_consen  168 GSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSE  247 (459)
T ss_pred             HHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            222221  122222333 3334444444557799999999999999999999999998888888887776542  21111


Q ss_pred             cCCCCh----hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003403          588 KGKATP----TALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLS  658 (823)
Q Consensus       588 ~~~~~~----~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~  658 (823)
                      ...+..    ..+++.+.++.+.+.+++..+.++..|  +..++++.+.++.+...++++.-.+.++.+..+.+.
T Consensus       248 ~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~E--is~grl~~~Dl~~i~~~lr~l~~~~~gL~~~~~~~~  320 (459)
T PF10337_consen  248 PSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLE--ISYGRLSPDDLKPIFSLLRSLMIPLSGLSSFCDLFQ  320 (459)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111    456677888999999999999999999  445789999999999999999998888877544443

Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.

>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains

Probab=98.52  E-value=1.4e-05  Score=84.28  Aligned_cols=208  Identities=18%  Similarity=0.235  Sum_probs=129.2

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhcCCC---Chh--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 003403          555 QPARAATLAKAQLAQSLQALQDGIKDIV--LFADQKGKA---TPT--ALRDKQKRLKSHINELDKFIAEAEMEPNFWFLP  627 (823)
Q Consensus       555 ~P~~a~~~l~~~l~~~L~~l~~~l~~~~--L~~~~~~~~---~~~--~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~p  627 (823)
                      .|.+++..+|+.+++++..+++++..+.  .......+.   ...  ...+...++...+..++.++..+++||++ ++|
T Consensus         2 ~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l-~G~   80 (229)
T PF10334_consen    2 RPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSL-KGR   80 (229)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC-CCC
Confidence            5899999999999999999999998874  101000111   111  23345677889999999999999999985 899


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchH-HhhhhhHhHHHHHHHHHhhhhhhhHHHHHHhhHHhhh
Q 003403          628 FHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWK-QIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLA  706 (823)
Q Consensus       628 f~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~-~l~~~v~~~~~~~~~~v~~~l~~l~~~~~~~s~~~l~  706 (823)
                      ||.+.|+++...++++.+.+..+......+.      +..|+ .+...+...-   .+++++.+--+         ..+.
T Consensus        81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~------~~~~~~~l~~~~~~~~---~~~~~~i~~vl---------~~ls  142 (229)
T PF10334_consen   81 FPKETYQRLLELCQNILDLLSLLSYVSTRLE------PSEWRERLLRRTGWLR---PELIGDIFSVL---------YMLS  142 (229)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------hhhHHHHHHHHHHhhc---hHHHHHHHHHH---------HHHH
Confidence            9999999999999999999988766555441      23343 2222222111   13344433222         1222


Q ss_pred             hhhhhcccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhc---------CCcccccccccchhhhHHH
Q 003403          707 PERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSIN---------GYDGEEKHLSQTVLVLNGL  777 (823)
Q Consensus       707 ~~~~~~~~~~dle~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~l  777 (823)
                      ++         ++.|.+-++-. + +|        ++.-++.+.+......+         ..-+.+.+.+++...+++-
T Consensus       143 ~a---------l~~g~pLP~~l-p-~p--------l~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~y~~~~v~  203 (229)
T PF10334_consen  143 SA---------LRTGQPLPPYL-P-AP--------LVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRDEDYRRFCVA  203 (229)
T ss_pred             HH---------HhcCCCCCccC-C-cc--------hHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhCcChHHHHHH
Confidence            22         22222222111 0 11        11112222221111111         1122345678888888899


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHh
Q 003403          778 GFCISSLMKETTKIEKEIKELIK  800 (823)
Q Consensus       778 ~F~l~~l~~e~~~l~~~v~el~~  800 (823)
                      ..+...+..++++|...||||++
T Consensus       204 ~~~~~~i~~~lD~lv~~vK~lvG  226 (229)
T PF10334_consen  204 VSAASSILERLDELVIVVKELVG  226 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999974

Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].

>PF12805 FUSC-like: FUSC-like inner membrane protein yccS

Probab=98.49  E-value=8.4e-05  Score=80.93  Aligned_cols=151  Identities=14%  Similarity=0.160  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 003403          462 QGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEA  540 (823)
Q Consensus       462 ~GTvlGav~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei  540 (823)
                      +.|++|..++.+++.+....|++..++++++.++++++. ....|+..|+.+.+++...+.   .+... ..++.+..-+
T Consensus         3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~v~t~~---~~~~~-~~~~~~~~l~   78 (284)
T PF12805_consen    3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGMLGVYGPRAATIGFATLLVAVYTMA---GPSPG-PEALEHALLF   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh---CCCcc-hHHHHHHHHH
Confidence            455666645444455455567777777777777666665 344455556555444332222   23222 2778888999


Q ss_pred             HHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcCCCChhH----HHHHHHHHHHHHHHHHHHHH
Q 003403          541 SLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIV-LFADQKGKATPTA----LRDKQKRLKSHINELDKFIA  615 (823)
Q Consensus       541 ~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~-L~~~~~~~~~~~~----~~~~~~~L~~~L~~L~~ll~  615 (823)
                      ++|.+++.+.++++||-++....++.+++++..++++++.-. +..++ .+.+.+.    +...+.++...+...++.+-
T Consensus        79 ~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~~p~-~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~  157 (284)
T PF12805_consen   79 LAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFFDPD-QHDDDEQLRIELAQQQIKVNEALEQARELLL  157 (284)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999853 11111 1111111    23446677888888888877


Q ss_pred             Hh
Q 003403          616 EA  617 (823)
Q Consensus       616 ~A  617 (823)
                      ..
T Consensus       158 ~~  159 (284)
T PF12805_consen  158 RR  159 (284)
T ss_pred             Hh
Confidence            64

>TIGR01666 YCCS hypothetical membrane protein, TIGR01666

Probab=98.49  E-value=0.00024  Score=86.11  Aligned_cols=171  Identities=11%  Similarity=0.010  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 003403          407 LESLVFALKCSLSLGLAVILGLMYNKENG-YWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFR  485 (823)
Q Consensus       407 ~~~l~~AlK~slA~~LA~~ia~~~~l~~p-~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~  485 (823)
                      +..+.+++|+++|+..+.++.+++|..+- .=..+.++...-....+.++.-+.+++-|++...++.+.+.+....|+++
T Consensus         5 ~~~~~~~lri~ia~~~~~~~~~~~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf   84 (704)
T TIGR01666         5 NAKVIYTIPIFIALNGAAVGIWFFDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLF   84 (704)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            56788999999999999898888885332 22234455545556667777778888888888888877776666667776


Q ss_pred             HHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHH
Q 003403          486 FLPLLPWIIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAK  564 (823)
Q Consensus       486 ~l~L~vwi~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~  564 (823)
                      .+++++..+..+++. ....|+..++.+.+++.-.++|...+    ........-+++|.+++.+.++++|+-++..-++
T Consensus        85 ~~~l~~~tf~~~mlga~G~Rya~Iaf~tLliaiytmlg~~~~----~~w~~~pllll~GalwY~llsl~~~~l~p~rp~q  160 (704)
T TIGR01666        85 AVGLTVSTFGFIMLGAVGQRYATIAFGSLLVALYTMLGYIEV----NVWFIQPVMLLCGTLWYSVVTLIVHLFFPNRPVQ  160 (704)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            666554444344443 34446655555545444444443222    2334467888999999999999999998889999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 003403          565 AQLAQSLQALQDGIKDI  581 (823)
Q Consensus       565 ~~l~~~L~~l~~~l~~~  581 (823)
                      +.+++++..++++++.-
T Consensus       161 ~~LA~~y~~La~yL~ak  177 (704)
T TIGR01666       161 ENLAKAFCQLAEYLETK  177 (704)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999875

This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.

>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family

Probab=98.38  E-value=0.00087  Score=81.51  Aligned_cols=171  Identities=11%  Similarity=-0.040  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 003403          407 LESLVFALKCSLSLGLAVILGLMYNKENGY-WSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFR  485 (823)
Q Consensus       407 ~~~l~~AlK~slA~~LA~~ia~~~~l~~p~-WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~  485 (823)
                      +..+.+++|+++|+..+.++.+++|..... =+.+.++...-....+.++--+.+++-|++...++.+.+.+....|+++
T Consensus         5 ~~~~~~~l~v~ia~~~~~~~~~~~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~   84 (701)
T TIGR01667         5 NQKLVYCLPVFIALMGAELRIWWFGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLF   84 (701)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            567889999999999998888888853322 2223333344455566666666666666666666666665555566666


Q ss_pred             HHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHH
Q 003403          486 FLPLLPWIIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAK  564 (823)
Q Consensus       486 ~l~L~vwi~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~  564 (823)
                      .+++++..+..+++. ....|+..++-+.+++.-.++|...+    ..-.....-+++|.+++.+.++++++-++..-++
T Consensus        85 ~~~l~~~tf~~~mlga~G~r~~~I~f~~L~~aiytml~~~~~----~~w~~~pllll~GalwY~l~sll~~~l~p~rp~q  160 (701)
T TIGR01667        85 PFLLTLLTFGFILLGALGQRYATIAFASLLAAIYTMLGAGEV----PVWFIEPLLILAGTLWYGLLTLIWFLLFPNQPLQ  160 (701)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHcCcccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            555544433333333 34455533333333332233432211    1223355568889999999999988888888889


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 003403          565 AQLAQSLQALQDGIKDI  581 (823)
Q Consensus       565 ~~l~~~L~~l~~~l~~~  581 (823)
                      +.+++++..++++++.-
T Consensus       161 ~~La~~y~~La~yL~aK  177 (701)
T TIGR01667       161 ESLSRLYRELAEYLEAK  177 (701)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998875

TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane

>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi

Probab=97.59  E-value=0.00041  Score=80.67  Aligned_cols=258  Identities=16%  Similarity=0.097  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhc--cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhc-
Q 003403           18 RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILS--DATLGDTLRGCWHALYATIQIMIPSILCLWLV-   94 (823)
Q Consensus        18 ~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s--~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~i-   94 (823)
                      .+.--+|..++..|+-++ ...| +..+|++ ++-|++.++.|+.  ...+|..++.....+.|+..|.+.++|..|.. 
T Consensus        15 ~~k~~~k~~i~~~i~~~l-~~i~-~~~~~~g-~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~a~   91 (459)
T PF10337_consen   15 SLKIMFKCWIAPWIALIL-CQIP-PVARWLG-TAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYIAV   91 (459)
T ss_pred             HHHHHHHHHHHHHHHHHH-Hhch-HHHHHhc-chhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666665554333 4445 4567776 4555555555554  77999999999999999888888888887632 


Q ss_pred             --CCC----------------C------------------CChh---HHHHHHHHHHHHHhcccCCchh-hhhhhcccee
Q 003403           95 --GPD----------------R------------------FTAD---VAAVVVTLMSFVVALPESTALM-AKRIAFGQIV  134 (823)
Q Consensus        95 --g~~----------------~------------------~~~~---~~l~~v~~~t~vv~~p~~t~~v-~kr~al~~~~  134 (823)
                        .++                .                  +++.   +..+|.+++.++.++-.+.+|- .==.-++.|+
T Consensus        92 ~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~  171 (459)
T PF10337_consen   92 AARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIF  171 (459)
T ss_pred             HHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence              233                1                  1111   2334555555555555555532 1111122232


Q ss_pred             eeEEEEEeeCCcc-cceeeehhhHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 003403          135 IVCVGTVVHGAKT-GIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAA  213 (823)
Q Consensus       135 i~~v~~~~~~~~t-~~i~~p~~v~~~~~~G~~~~~~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a  213 (823)
                      +....++----.| .....+..+..-.++|+..++++.++-||..+...+-+.+..+.+-+.+.++.-.+.|-..+...-
T Consensus       172 ~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~  251 (459)
T PF10337_consen  172 VDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDE  251 (459)
T ss_pred             HHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            2111111100011 122222234556788888899999999999999999999999999999999998887765433211


Q ss_pred             h--hhHHHHHHHHHHHHHHHHHHHhhccCccccccccccCCCCCCChHHHHHhhhccccchHHHHhh
Q 003403          214 L--DSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTS  278 (823)
Q Consensus       214 ~--~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~~~~~~~~~~~~~~~L~~~Lrgm~~al~~  278 (823)
                      .  ...++.+-.+......+.+++..+..+..|-..-++.-+-.+...+.+++|..++.||...++.
T Consensus       252 ~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~~~~~~  318 (459)
T PF10337_consen  252 FDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLSSFCDL  318 (459)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  1234444455566666777777777777774432222233444445677777777777776665

Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.

>COG4129 Predicted membrane protein [Function unknown]

Probab=97.36  E-value=0.0039  Score=69.21  Aligned_cols=148  Identities=11%  Similarity=0.193  Sum_probs=87.4

Q ss_pred             CcccCcchhhhhhhhhc-cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCChhHHHHHHHHHHHHHhcccCCchh
Q 003403           46 MPAFPAFSYVTTILILS-DATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALM  124 (823)
Q Consensus        46 ~~~fps~~yv~t~~i~s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~~~~~~~~l~~v~~~t~vv~~p~~t~~v  124 (823)
                      |+..|.--+.+...|+| ..|..+.++.+|+.+.|+..|++.|.+...++|.+.+.-|+++..+...++.+-+  ..+  
T Consensus        29 ~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~~~~~~~--~~g--  104 (332)
T COG4129          29 LLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKL--ENG--  104 (332)
T ss_pred             HhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhc--ccc--
Confidence            44466666888888888 8999999999999999999999999999999987665555544333222222211  111  


Q ss_pred             hhhhhccceeeeEEEEEeeCCcccceeeehhhHHHHHHHHHHHHHH-HhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003403          125 AKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVA-MLLPYPRLAYHEVKKSSKLYAENASEMLNHFVK  203 (823)
Q Consensus       125 ~kr~al~~~~i~~v~~~~~~~~t~~i~~p~~v~~~~~~G~~~~~~a-~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~  203 (823)
                      +-=.+++.+ ++++..-+.+     ..-+. =...+.+|+..+++. ..+|=|....+.-+++.....+++.....-.++
T Consensus       105 ~~~~~~~~~-~ii~~~~~~~-----~~~~~-r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~kv~~~~~~il~~~~~~l~  177 (332)
T COG4129         105 VVPITVGVL-HILVAAMIPL-----FLIFN-RFLLVFVGVGVAFLVNLVMPPPDYELKLYRAKVEAILASILWEVASYLR  177 (332)
T ss_pred             hhHHHHHHH-HHHHHcccch-----hHHHH-HHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111222222 3333322211     11111 345677888877774 444455545555555555555555555444444


Q ss_pred             H
Q 003403          204 A  204 (823)
Q Consensus       204 ~  204 (823)
                      .
T Consensus       178 ~  178 (332)
T COG4129         178 D  178 (332)
T ss_pred             c
Confidence            3

>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins

Probab=97.33  E-value=0.0059  Score=59.67  Aligned_cols=137  Identities=13%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 003403          413 ALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPW  492 (823)
Q Consensus       413 AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~vw  492 (823)
                      ++|.+.+..++..++..+|++.|+-+.+-.+++..+..--..+...+=+..+++=+..+.++..++.+.|....+.+.+.
T Consensus         2 ~LRia~g~~l~l~~~~~~~~~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P~~~~l~v~l~   81 (140)
T PF11168_consen    2 ALRIAFGVTLGLFLSKLFGWPLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYPVVMLLLVFLL   81 (140)
T ss_pred             eeehhHHHHHHHHHHHHHCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            57899999999999999999999999988888886666667777777778888888888888888888887655444333


Q ss_pred             HHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 003403          493 IIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEIL  553 (823)
Q Consensus       493 i~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~l  553 (823)
                      ..+..+.. ++..+..+.+...........+.    .+.+.+.++......|+++++++.++
T Consensus        82 ~~~~f~~~~~~~~~l~~~~~lv~~~ii~~f~~----~~~~~~~~l~~~l~~~~~iav~i~~l  139 (140)
T PF11168_consen   82 FFWSFYRMSRGPKFLFGTMLLVGLSIIPVFAS----YNTADAEDLILSLVLAILIAVLIAAL  139 (140)
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            32222222 33333322221111111122322    23468888999999999999988764

However, this cannot be confirmed.

>PF12805 FUSC-like: FUSC-like inner membrane protein yccS

Probab=92.75  E-value=0.97  Score=49.31  Aligned_cols=99  Identities=20%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEEEEeeCCcc-cceeeehhhHHHHHHHHHHHHHHHhcCCchhhh
Q 003403          102 DVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKT-GIVMHPIHVASSTALGALASVVAMLLPYPRLAY  180 (823)
Q Consensus       102 ~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~~~~~~~~t-~~i~~p~~v~~~~~~G~~~~~~a~llP~P~~A~  180 (823)
                      +...+.+++.+|++.+-.--++-+..++++.. +++|.++..+... +...|    +....+|.+-..+..++-||.++.
T Consensus        24 ~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~L-l~~v~t~~~~~~~~~~~~~----~~l~~~Gglwy~~lsl~~~~l~p~   98 (284)
T PF12805_consen   24 WLLILVLALLTFFFGMLGVYGPRAATIGFATL-LVAVYTMAGPSPGPEALEH----ALLFLAGGLWYLLLSLLWWPLRPY   98 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHhCCCcchHHHHH----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33344455555554444333444667776665 4445455555532 23333    477788999888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003403          181 HEVKKSSKLYAENASEMLNHFVKAF  205 (823)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~v~~f  205 (823)
                      +-+|+.+.+.-+.+++-++.-.+-|
T Consensus        99 r~~rqaLa~~y~~lA~yl~~ka~~~  123 (284)
T PF12805_consen   99 RPVRQALAECYRALADYLRAKARFF  123 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999977777

>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=92.58  E-value=0.62  Score=45.60  Aligned_cols=72  Identities=15%  Similarity=0.223  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhc-cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCCh
Q 003403           23 LRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILS-DATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTA  101 (823)
Q Consensus        23 ~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~~~~~  101 (823)
                      +||++|+.++=.+.-        ++..|.-.|.....|++ ..|+-++++..++.+.|++.|+..+++...+.|++.+..
T Consensus         8 iKtaiA~~la~~ia~--------~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~   79 (141)
T PF06081_consen    8 IKTAIAAFLAILIAQ--------LLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSI   79 (141)
T ss_pred             HHHHHHHHHHHHHHH--------HHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence            567777666433211        11123335888888888 999999999999999999999999999988887755333


Q ss_pred             h
Q 003403          102 D  102 (823)
Q Consensus       102 ~  102 (823)
                      +
T Consensus        80 ~   80 (141)
T PF06081_consen   80 G   80 (141)
T ss_pred             H
Confidence            3

>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains

Probab=90.78  E-value=1.3  Score=46.93  Aligned_cols=107  Identities=17%  Similarity=0.107  Sum_probs=80.5

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chh--hhhhHHHHHHHHHHHHHHHHHHHhhccCcccccccc-c
Q 003403          174 PYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQD-NTA--ALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQI-R  249 (823)
Q Consensus       174 P~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~-~~~--a~~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~-~  249 (823)
                      |||..|.+.+|+.+......++.....+++.+..+. +..  ..................|..++....-..||.... +
T Consensus         1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~   80 (229)
T PF10334_consen    1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKGR   80 (229)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence            999999999999999999999999999998888753 111  111111222333355677788899999999998843 3


Q ss_pred             cCCCCCCChHHHHHhhhccccchHHHHhhCC
Q 003403          250 FLKPNYKDPREKLQELEIPIRGMELALTSCP  280 (823)
Q Consensus       250 ~~~~~~~~~~~~~~~L~~~Lrgm~~al~~~~  280 (823)
                      |-+..|.+..+..+++...|..|..+....+
T Consensus        81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~  111 (229)
T PF10334_consen   81 FPKETYQRLLELCQNILDLLSLLSYVSTRLE  111 (229)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3367888888999999988888888777664

Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].

>PF13515 FUSC_2: Fusaric acid resistance protein-like

Probab=86.58  E-value=0.97  Score=42.50  Aligned_cols=48  Identities=19%  Similarity=0.357  Sum_probs=35.4

Q ss_pred             Ccchhhh-hhhhhccCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCC
Q 003403           50 PAFSYVT-TILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDR   98 (823)
Q Consensus        50 ps~~yv~-t~~i~s~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~~   98 (823)
                      |-.+++. +++++...+.|++.+.+++.+.||+.|+..+.+...+. |++
T Consensus        12 ~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~-~~~   60 (128)
T PF13515_consen   12 PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLF-PGN   60 (128)
T ss_pred             CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCH
Confidence            4344444 33333566999999999999999999988888887665 543

>KOG4711 consensus Predicted membrane protein [General function prediction only]

Probab=84.67  E-value=0.48  Score=56.75  Aligned_cols=172  Identities=15%  Similarity=0.181  Sum_probs=100.1

Q ss_pred             cccccchHHHHH------hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhccCchhHHHHHHHHHHHH
Q 003403            6 RADSTTKALWRR------RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYA   79 (823)
Q Consensus         6 ~~~~~~~~~wr~------~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s~~t~G~~l~~~~~~l~~   79 (823)
                      |+++..+..|+.      +.-+|++.+++-++++.+-.+.|.  -+-++.-+...+.|++|+=..++|+|+.-..-.-.|
T Consensus        74 kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~--~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~  151 (625)
T KOG4711|consen   74 KVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPL--YKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVG  151 (625)
T ss_pred             HHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeecccc--ccccchhhhheeeEEEEEEEeccchHHHHhHHHHHH
Confidence            344455556654      677799999999999998777763  234444443333455444366666666665555555


Q ss_pred             HHHHhHhHHHHHh--h-cCCCCCChhH-----HHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEEEEeeCCccccee
Q 003403           80 TIQIMIPSILCLW--L-VGPDRFTADV-----AAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVM  151 (823)
Q Consensus        80 t~~~~~~s~l~l~--~-ig~~~~~~~~-----~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~~~~~~~~t~~i~  151 (823)
                      |+-..+.++-.-|  . .|+  .+..+     +....+..+++-.+|.-.+   ....+.-++..|.+..+-+-++   -
T Consensus       152 tL~ag~l~l~~~~la~~~g~--~~~~i~~~~~vF~~~~~~ty~~f~p~iK~---y~y~~lIf~ltf~l~~vs~~r~---~  223 (625)
T KOG4711|consen  152 TLSAGGLALGIERLAEISGK--DNESIFIGITVFIAGAKATYSLFFPYIKA---YEYGFLIFILTFCLVEVSGYRS---D  223 (625)
T ss_pred             HhhhhhhhhhhHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhchhhhc---cchhhhHHHHHhhhheecccch---h
Confidence            5555555554423  2 333  22221     2233346666677775443   3344333334444433334343   2


Q ss_pred             eehhhHH----HHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 003403          152 HPIHVAS----STALGALASVVAMLLPYPRLAYHEVKKSS  187 (823)
Q Consensus       152 ~p~~v~~----~~~~G~~~~~~a~llP~P~~A~~~~~~~~  187 (823)
                      +++.++.    .+++|...|++.-.+-||..|-.++++..
T Consensus       224 ~~~~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~  263 (625)
T KOG4711|consen  224 YFLELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLD  263 (625)
T ss_pred             HHHHHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhh
Confidence            3333443    47899999999999999999997777666

>TIGR02865 spore_II_E stage II sporulation protein E

Probab=82.13  E-value=1.5e+02  Score=37.27  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH-HHHHHhcchhhH-HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q 003403          462 QGTAMGSVYGVICSFLLQKSVNFRFLPLLPWII-FSSFLRHSRMYE-EAGAISAVIGALLILGRKNYGTPSEFAIARITE  539 (823)
Q Consensus       462 ~GTvlGav~g~~~~~l~~~~p~~~~l~L~vwi~-~~s~l~~~~~Y~-lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~e  539 (823)
                      .|+.+|++.|++........+  ..+++..+.+ ....++...-++ -.||+.+.+.+.++.   +  ...++... +.|
T Consensus       197 ~Gaa~Gv~~Gli~~l~~~~~~--~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~---~--~~~~~~~~-~~e  268 (764)
T TIGR02865       197 AGAAGGVVIGVILGLANNANL--YQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYT---Q--GSVAFSLA-LYE  268 (764)
T ss_pred             HhHHHHHHHHHHHHhcCccHH--HHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHh---c--cchhHHHH-HHH
Confidence            455666666666554333332  2233333332 233444333333 445554433222222   1  11122222 567


Q ss_pred             HHHHHHHHHHH
Q 003403          540 ASLGLICFIIV  550 (823)
Q Consensus       540 i~IGivia~~V  550 (823)
                      +.+++++.+++
T Consensus       269 ~~ia~~lFll~  279 (764)
T TIGR02865       269 ALIATLLFLLI  279 (764)
T ss_pred             HHHHHHHHHHh
Confidence            77777665443

Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	823
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 89.1 bits (220), Expect = 3e-18
 Identities = 98/665 (14%), Positives = 185/665 (27%), Gaps = 222/665 (33%)

Query: 196 EMLNHFVKAF-----C--AQDNTAALDSISEAKSLFKA-----GAKQLL-SIKDKQE--- 239
           ++L+ F  AF     C   QD   ++ S  E   +  +     G  +L  ++  KQE   
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 240 ------------GMLWERPQIRFLKPN-------------YKDP---------------- 258
                         L    +    +P+             Y D                 
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 259 -REKLQELE----IPIRGME------LALTSCPS------FPVGM---------IDEDLR 292
            R+ L EL     + I G+       +AL  C S          +           E + 
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 293 DVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDE------------SLWSLKAISS 340
           ++LQ L      +++      S  ++       + + E             L  L  + +
Sbjct: 200 EMLQKLL----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 341 TEDVPASFFFYCIKLL--------QDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKC 392
            +   A F   C K+L         D L  A      ++    T T    +S        
Sbjct: 256 AKAWNA-FNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----L-- 307

Query: 393 KLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQA 452
            LK++      LP        L  +    L++I           W               
Sbjct: 308 -LKYLDCRPQDLPRE-----VLTTNP-RRLSII-AESIRDGLATWD-------------- 345

Query: 453 TFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEAGAIS 512
            +K  N     T +            + S+N     L P         + +M++      
Sbjct: 346 NWKHVNCDKLTTII------------ESSLNV----LEPAE-------YRKMFDR----- 377

Query: 513 AVIGALLILGRKNYGTPSEFAIARITEASLGLI----CFIIVEILFQPARAATLAKAQLA 568
                L +    +         A I    L LI        V ++       +L + Q  
Sbjct: 378 -----LSVF-PPS---------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 569 QSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPN-----F 623
           +S  ++     ++        K          + +  H N    F ++  + P      +
Sbjct: 423 ESTISIPSIYLEL--------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 624 WFLPFHGSCYENILASLSRMADLL--LFVAYKTEFLSQLSERFGVSWKQIQEPIND--DL 679
             +  H    E+          L   +F+ ++  FL Q       +W      +N    L
Sbjct: 475 SHIGHHLKNIEH-----PERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 680 ELFKEKVGHSLKCFEEVI--LIKSLAVLAPERQNRNISHDVESGRLPNEDVPR-TLSPDE 736
           + +K  +  +   +E ++  ++  L      +   N+            D+ R  L  ++
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFL-----PKIEENLICS------KYTDLLRIALMAED 576

Query: 737 EEIEE 741
           E I E
Sbjct: 577 EAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 83/577 (14%), Positives = 167/577 (28%), Gaps = 167/577 (28%)

Query: 282 FPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWSLKAISST 341
           F  G      +D+L   +      ++   C    D   +  +++            +S  
Sbjct: 9   FETGEHQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKEEIDH------IIMSKD 59

Query: 342 EDVPASFFFYCI---------KLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKC 392
                   F+ +         K +++ L    N +F+++  +    + S  ++   + + 
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 393 KLKWISSSLFL---LPSLESLVFALK---CSLSLGLAVIL-GLMYNKENGYWSG---LTI 442
           +L +  + +F    +  L+     L+     L     V++ G +     G  SG   + +
Sbjct: 118 RL-YNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDG-V----LG--SGKTWVAL 168

Query: 443 AI--SFATNRQATFKV--ANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSF 498
            +  S+    +  FK+   N +   +   +V  ++   L Q   N+         I    
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 499 ------LRH---SRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFII 549
                 LR    S+ YE           LL+L             A+   A   L C I+
Sbjct: 228 HSIQAELRRLLKSKPYENC---------LLVL--------LNVQNAKAWNA-FNLSCKIL 269

Query: 550 VEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINE 609
           +          T    Q+   L A       I L        TP    D+ K L      
Sbjct: 270 L----------TTRFKQVTDFLSAAT--TTHISLDHHSMT-LTP----DEVKSL------ 306

Query: 610 LDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWK 669
           L K++     +     LP       N    LS      +      + L+         WK
Sbjct: 307 LLKYLDCRPQD-----LP-REVLTTNPRR-LS------IIAESIRDGLATWDN-----WK 348

Query: 670 QIQEPINDDLELFKEKVGHSLKCFEEVI---LIKSLAVLAPERQNRNISHDVESGRLPNE 726
            +     D L      +  SL   E      +   L+V  P                   
Sbjct: 349 HVN---CDKL---TTIIESSLNVLEPAEYRKMFDRLSVF-PP--------SA-------- 385

Query: 727 DVP-RTLS-----PDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFC 780
            +P   LS       + ++  +++    H   +          EK   ++ + +  +   
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKL--HKYSLV---------EKQPKESTISIPSIYLE 434

Query: 781 ISSLMKETTKIEKEIKELIKWENPTRNINLYEISCKL 817
           +   ++    + + I            ++ Y I    
Sbjct: 435 LKVKLENEYALHRSI------------VDHYNIPKTF 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 48/329 (14%), Positives = 98/329 (29%), Gaps = 82/329 (24%)

Query: 549 IVEILFQPARAATLAKAQLAQSLQAL--QDGIKDIVLFADQKGKATP--TALRDKQKRLK 604
           I+ + F+ A         +    +++  ++ I  I++  D           L  KQ+   
Sbjct: 21  ILSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--- 76

Query: 605 SHINELDKFIAEAEMEPNFWFL--PFHGSC------YENILASLSRMA-DLLLFVAYK-- 653
                + KF+ E  +  N+ FL  P               +    R+  D  +F  Y   
Sbjct: 77  ---EMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 654 --------TEFLSQLSER----------FGVSW--------KQIQEPINDDLELFKEKVG 687
                    + L +L              G +W         ++Q  ++   ++F   + 
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KIFWLNLK 190

Query: 688 HSLKCFEEVILIKSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFL 747
               C     +++ L           + + ++       D    +      I+  L   L
Sbjct: 191 ---NCNSPETVLEMLQ---------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 748 QHSK---------EVANS--INGYDGEEKHL-----SQTVLVLNGLGFCISSLMKETTKI 791
           +             V N+   N ++   K L      Q    L+       SL   +  +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 792 -EKEIKELI-KWENPTRNINLYEISCKLN 818
              E+K L+ K+ +  R  +L       N
Sbjct: 299 TPDEVKSLLLKYLD-CRPQDLPREVLTTN 326

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 60/459 (13%), Positives = 123/459 (26%), Gaps = 172/459 (37%)

Query: 41  EHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFT 100
             LR +    +  Y   +L+L +           +A          ++ C  L+     T
Sbjct: 232 AELRRL--LKSKPYENCLLVLLNV---------QNA--KAWNAF--NLSCKILL----TT 272

Query: 101 AD--VAAVVVTLMSFVVAL---------PESTALMAKRIAFGQIVIVCVGTVV----HGA 145
               V   +    +  ++L          E  +L+ K           +           
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----------YLDCRPQDLPREV 322

Query: 146 KTGIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAF 205
            T    +P  +          S++A  +        +   +   +     + L   +++ 
Sbjct: 323 LTT---NPRRL----------SIIAESI-------RDGLATWDNWKHVNCDKLTTIIESS 362

Query: 206 CAQDNTAALDSISEAKSLFKA------GAK---QLLSIKDKQEGMLWERPQIRFLKPNYK 256
                   L+  +E + +F         A     LLS+       +W             
Sbjct: 363 LNV-----LEP-AEYRKMFDRLSVFPPSAHIPTILLSL-------IWF-------DVIKS 402

Query: 257 DPREKLQELEIPIRGMELALTSCPSFPVGMIDED-------LRDVLQSLKAEIGLK---- 305
           D    + +L                    ++++        +  +   LK ++  +    
Sbjct: 403 DVMVVVNKLH----------------KYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 306 ---LEQ---AKCYASFDATTAPETQKNCKDESLWS-----LKAISSTEDV---PASFF-- 349
              ++     K + S D            D+  +S     LK I   E +      F   
Sbjct: 447 RSIVDHYNIPKTFDSDDLI------PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 350 -FYCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLE 408
            F   K+  D    A NA   +  T           Q    +K    +I  +    P  E
Sbjct: 501 RFLEQKIRHDST--AWNASGSILNTL----------QQLKFYK---PYICDN---DPKYE 542

Query: 409 SLV-----FALKCSLSLGLA-----VILGLMYNKENGYW 437
            LV     F  K   +L  +     + + LM  ++   +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALM-AEDEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00