Citrus Sinensis ID: 003416
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 821 | 2.2.26 [Sep-21-2011] | |||||||
| P56960 | 887 | Exosome component 10 OS=M | yes | no | 0.317 | 0.294 | 0.550 | 4e-81 | |
| Q01780 | 885 | Exosome component 10 OS=H | yes | no | 0.320 | 0.297 | 0.535 | 4e-80 | |
| Q10146 | 777 | Exosome complex exonuclea | yes | no | 0.433 | 0.458 | 0.362 | 1e-60 | |
| Q12149 | 733 | Exosome complex exonuclea | yes | no | 0.383 | 0.429 | 0.374 | 3e-53 | |
| A6V8R6 | 376 | Ribonuclease D OS=Pseudom | yes | no | 0.274 | 0.598 | 0.285 | 1e-14 | |
| Q6G329 | 406 | Ribonuclease D OS=Bartone | yes | no | 0.314 | 0.635 | 0.246 | 1e-13 | |
| A7HYE5 | 384 | Ribonuclease D OS=Parviba | no | no | 0.291 | 0.622 | 0.250 | 9e-13 | |
| A9H9B7 | 393 | Ribonuclease D OS=Glucona | yes | no | 0.322 | 0.674 | 0.240 | 8e-12 | |
| B8EN54 | 399 | Ribonuclease D OS=Methylo | yes | no | 0.306 | 0.631 | 0.275 | 1e-11 | |
| P44442 | 399 | Ribonuclease D OS=Haemoph | yes | no | 0.336 | 0.691 | 0.246 | 2e-11 |
| >sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2 | Back alignment and function desciption |
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Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
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Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. EXOSC10 has 3'-5' exonuclease activity (By similarity). EXOSC10 is required for nucleolar localization of C1D and probably mediates the association of SKIV2L2, C1D and MPP6 wth the RNA exosome involved in the maturation of 5.8S rRNA. Mus musculus (taxid: 10090) EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: - |
| >sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1 | Back alignment and function description |
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| >sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3 SV=2 | Back alignment and function description |
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| >sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston 1) GN=rnd PE=3 SV=1 | Back alignment and function description |
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| >sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rnd PE=3 SV=2 | Back alignment and function description |
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| >sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1 | Back alignment and function description |
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| >sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rnd PE=3 SV=2 | Back alignment and function description |
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| >sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rnd PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 821 | ||||||
| 359481017 | 931 | PREDICTED: exosome component 10-like [Vi | 0.965 | 0.851 | 0.552 | 0.0 | |
| 296085897 | 901 | unnamed protein product [Vitis vinifera] | 0.900 | 0.820 | 0.576 | 0.0 | |
| 449462768 | 936 | PREDICTED: exosome component 10-like [Cu | 0.956 | 0.838 | 0.546 | 0.0 | |
| 356565747 | 889 | PREDICTED: exosome component 10-like [Gl | 0.922 | 0.851 | 0.551 | 0.0 | |
| 449522510 | 935 | PREDICTED: exosome component 10-like [Cu | 0.954 | 0.838 | 0.543 | 0.0 | |
| 255569470 | 857 | 3'-5' exonuclease, putative [Ricinus com | 0.840 | 0.805 | 0.556 | 0.0 | |
| 224123860 | 858 | predicted protein [Populus trichocarpa] | 0.884 | 0.846 | 0.549 | 0.0 | |
| 356514039 | 877 | PREDICTED: exosome component 10-like [Gl | 0.911 | 0.852 | 0.522 | 0.0 | |
| 224144831 | 855 | predicted protein [Populus trichocarpa] | 0.884 | 0.849 | 0.538 | 0.0 | |
| 297805136 | 867 | hypothetical protein ARALYDRAFT_355577 [ | 0.886 | 0.839 | 0.501 | 0.0 |
| >gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/856 (55%), Positives = 593/856 (69%), Gaps = 63/856 (7%)
Query: 1 MDVSFDEFSKARGENGEGDGNEG-GFQLVYGKNKKKG-------DIVGGSAPASVKVKDR 52
D + +EF R + + + G GFQLV G+ KK G V + ++ VKD+
Sbjct: 104 FDAAAEEFRGLRLKQEQSRIDSGDGFQLVCGRKKKWGQSEMGQDSTVVAHSNVALAVKDK 163
Query: 53 KE-----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVL 107
+ + +VPFH+PTI +PQ+E+ I+VNN+NQPFQHVWLQ+S+D RFIHPL+ LS+L
Sbjct: 164 RTVGPAARPRVPFHIPTIPRPQDEFNILVNNSNQPFQHVWLQRSDDGLRFIHPLEKLSLL 223
Query: 108 DFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGL 167
DFVDK+IGD+ V PPS+E TPFKLVEEV+DLKELAAKL V+EFAVDLEHNQYRSF GL
Sbjct: 224 DFVDKNIGDLMPVMPPSIEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQGL 283
Query: 168 TCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 227
TCLMQISTRTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+C
Sbjct: 284 TCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYIC 343
Query: 228 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287
NMFDTGQASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYL
Sbjct: 344 NMFDTGQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYL 403
Query: 288 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 347
L+IYD+M+ +L SM E ENS+ L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA
Sbjct: 404 LHIYDLMRTQLLSMA-ELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAH 462
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
NAQQLA+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y
Sbjct: 463 FNAQQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPY 522
Query: 408 IERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLK 460
+ER +GPV+SII++S+ NAA FE AQ LKE + ASE+ E L ++ ++++
Sbjct: 523 VERNLGPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIR 582
Query: 461 IPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIA 519
+ ES D + + G + K+ + GS++ G G + PGE+
Sbjct: 583 AADARAESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKE 642
Query: 520 SENKEATHI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN- 571
++++ + I T +SSGQSRD + S S +VTE VQ LKKPNR FG+LLGN
Sbjct: 643 VKDEKDSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNS 702
Query: 572 -PKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSF 630
KRK + + K KE +KLEQIKSSVNLPFHS S N+ +L
Sbjct: 703 ASKRKLNSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL------ 742
Query: 631 GSGEQTKPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASA 688
+K EE +V SEEP PA+R D E+II E++ +E GN A+
Sbjct: 743 -----SKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANE 797
Query: 689 P---GEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQL 745
ED GS LEM + +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+
Sbjct: 798 QLEGKEDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQV 857
Query: 746 KPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGR 805
KPFD+EAARKQ+ FGED E+S G +G + V+S KK+ + Q +D T + +QGR
Sbjct: 858 KPFDYEAARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGR 915
Query: 806 RRSAFPATGNRSATFR 821
RR AFPATGNRS TFR
Sbjct: 916 RRQAFPATGNRSVTFR 931
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa] gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa] gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 821 | ||||||
| MGI|MGI:1355322 | 887 | Exosc10 "exosome component 10" | 0.388 | 0.359 | 0.483 | 1.4e-84 | |
| UNIPROTKB|E1C525 | 910 | EXOSC10 "Uncharacterized prote | 0.367 | 0.331 | 0.498 | 9.5e-84 | |
| UNIPROTKB|Q01780 | 885 | EXOSC10 "Exosome component 10" | 0.387 | 0.359 | 0.472 | 9.4e-82 | |
| RGD|2323986 | 859 | LOC100366273 "rCG30986-like" [ | 0.319 | 0.305 | 0.543 | 9.4e-82 | |
| UNIPROTKB|D4A1X2 | 884 | LOC100366273 "Protein LOC10036 | 0.319 | 0.296 | 0.543 | 9.4e-82 | |
| UNIPROTKB|F1PI20 | 908 | EXOSC10 "Uncharacterized prote | 0.387 | 0.350 | 0.484 | 8.5e-77 | |
| UNIPROTKB|B4DKG8 | 679 | EXOSC10 "Exosome component 10" | 0.387 | 0.468 | 0.472 | 1.8e-76 | |
| UNIPROTKB|F1RHR9 | 886 | EXOSC10 "Uncharacterized prote | 0.387 | 0.358 | 0.478 | 2.9e-76 | |
| UNIPROTKB|A7E323 | 702 | EXOSC10 "Uncharacterized prote | 0.350 | 0.410 | 0.511 | 5.9e-76 | |
| UNIPROTKB|E1BMZ5 | 890 | EXOSC10 "Uncharacterized prote | 0.350 | 0.323 | 0.506 | 1.4e-74 |
| MGI|MGI:1355322 Exosc10 "exosome component 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Score = 747 (268.0 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 159/329 (48%), Positives = 211/329 (64%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPP-- 123
+PQ+ + + V A F H + + F HP LD ++ KP
Sbjct: 223 RPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY--ELDHFTPPQSVLQRPKPQLY 280
Query: 124 -SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
++ +TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+V
Sbjct: 281 RAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIV 340
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L
Sbjct: 341 DTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLA 399
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 400 RHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW--- 456
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
+ + L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L W
Sbjct: 457 ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAW 516
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP 391
RD AR +DES GYVLPN +++IA++LP
Sbjct: 517 RDKTARREDESYGYVLPNHMMLKIAEELP 545
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| UNIPROTKB|E1C525 EXOSC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q01780 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|2323986 LOC100366273 "rCG30986-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D4A1X2 LOC100366273 "Protein LOC100366273" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PI20 EXOSC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4DKG8 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RHR9 EXOSC10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A7E323 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BMZ5 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.13 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 821 | |||
| cd06147 | 192 | cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease d | 1e-113 | |
| pfam01612 | 172 | pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease | 1e-54 | |
| COG0349 | 361 | COG0349, Rnd, Ribonuclease D [Translation, ribosom | 2e-50 | |
| cd06142 | 178 | cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domai | 8e-49 | |
| smart00474 | 172 | smart00474, 35EXOc, 3'-5' exonuclease | 9e-41 | |
| cd06129 | 161 | cd06129, RNaseD_like, DEDDy 3'-5' exonuclease doma | 1e-38 | |
| TIGR01388 | 367 | TIGR01388, rnd, ribonuclease D | 6e-22 | |
| cd06148 | 197 | cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease dom | 8e-19 | |
| pfam00570 | 68 | pfam00570, HRDC, HRDC domain | 1e-14 | |
| cd06146 | 193 | cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d | 1e-11 | |
| smart00341 | 81 | smart00341, HRDC, Helicase and RNase D C-terminal | 7e-10 | |
| cd06141 | 170 | cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o | 8e-09 | |
| PRK05755 | 880 | PRK05755, PRK05755, DNA polymerase I; Provisional | 1e-08 | |
| cd09018 | 150 | cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' e | 2e-08 | |
| PRK10829 | 373 | PRK10829, PRK10829, ribonuclease D; Provisional | 2e-07 | |
| COG0749 | 593 | COG0749, PolA, DNA polymerase I - 3'-5' exonucleas | 7e-05 |
| >gnl|CDD|99850 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-113
Identities = 110/193 (56%), Positives = 138/193 (71%), Gaps = 1/193 (0%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
++TP V+ + L+EL KLK+ E AVDLEH+ YRS+LG TCLMQISTR ED++VDTL
Sbjct: 1 DETPLTFVDTEEKLEELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREEDYIVDTL 60
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
KLR L EVF DP KV HGAD DI+WLQRDFG+Y+ N+FDTGQA+RVL L R+S
Sbjct: 61 KLR-DDMHILNEVFTDPNILKVFHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLPRHS 119
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L YLL +C V+A+K+YQ ADWR+RPLP+EM++YAREDTHYLLYIYD ++ +L
Sbjct: 120 LAYLLQKYCNVDADKKYQLADWRIRPLPEEMIKYAREDTHYLLYIYDRLRNELLERANAL 179
Query: 306 ENSDTPLTEVYKR 318
+ R
Sbjct: 180 APNLLESVLNCSR 192
|
Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome. Length = 192 |
| >gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease | Back alignment and domain information |
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| >gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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| >gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins | Back alignment and domain information |
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| >gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease | Back alignment and domain information |
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| >gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
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| >gnl|CDD|130455 TIGR01388, rnd, ribonuclease D | Back alignment and domain information |
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| >gnl|CDD|99851 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins | Back alignment and domain information |
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| >gnl|CDD|201312 pfam00570, HRDC, HRDC domain | Back alignment and domain information |
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| >gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
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| >gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal | Back alignment and domain information |
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| >gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
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| >gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional | Back alignment and domain information |
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| >gnl|CDD|176656 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins | Back alignment and domain information |
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| >gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional | Back alignment and domain information |
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| >gnl|CDD|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 821 | |||
| KOG2206 | 687 | consensus Exosome 3'-5' exoribonuclease complex, s | 100.0 | |
| PRK10829 | 373 | ribonuclease D; Provisional | 100.0 | |
| COG0349 | 361 | Rnd Ribonuclease D [Translation, ribosomal structu | 100.0 | |
| TIGR01388 | 367 | rnd ribonuclease D. This model describes ribonucle | 100.0 | |
| cd06129 | 161 | RNaseD_like DEDDy 3'-5' exonuclease domain of RNas | 99.97 | |
| cd06146 | 193 | mut-7_like_exo DEDDy 3'-5' exonuclease domain of C | 99.96 | |
| cd06141 | 170 | WRN_exo DEDDy 3'-5' exonuclease domain of WRN and | 99.95 | |
| cd06148 | 197 | Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro | 99.95 | |
| PF01612 | 176 | DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 | 99.94 | |
| cd06142 | 178 | RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon | 99.83 | |
| cd06147 | 192 | Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y | 99.82 | |
| smart00474 | 172 | 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo | 99.81 | |
| PRK05755 | 880 | DNA polymerase I; Provisional | 99.75 | |
| cd00007 | 155 | 35EXOc 3'-5' exonuclease. The 35EXOc domain is res | 99.68 | |
| PRK14975 | 553 | bifunctional 3'-5' exonuclease/DNA polymerase; Pro | 99.67 | |
| cd09018 | 150 | DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease | 99.67 | |
| cd06140 | 178 | DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' | 99.63 | |
| cd06139 | 193 | DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease | 99.49 | |
| PF00570 | 68 | HRDC: HRDC domain Bloom syndrome. Werner syndrome. | 99.46 | |
| smart00341 | 81 | HRDC Helicase and RNase D C-terminal. Hypothetical | 99.44 | |
| KOG2207 | 617 | consensus Predicted 3'-5' exonuclease [Replication | 99.42 | |
| COG0749 | 593 | PolA DNA polymerase I - 3'-5' exonuclease and poly | 99.3 | |
| TIGR00593 | 887 | pola DNA polymerase I. This family is based on the | 99.25 | |
| cd06128 | 151 | DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam | 98.85 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.68 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 98.15 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.94 | |
| cd06125 | 96 | DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas | 97.85 | |
| KOG4373 | 319 | consensus Predicted 3'-5' exonuclease [General fun | 97.76 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 97.59 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 96.58 | |
| TIGR01298 | 200 | RNaseT ribonuclease T. in gamma-subdivision Proteo | 96.47 | |
| PRK07942 | 232 | DNA polymerase III subunit epsilon; Provisional | 96.38 | |
| PRK06310 | 250 | DNA polymerase III subunit epsilon; Validated | 96.33 | |
| PRK05168 | 211 | ribonuclease T; Provisional | 96.18 | |
| cd06137 | 161 | DEDDh_RNase DEDDh 3'-5' exonuclease domain of the | 96.14 | |
| PRK07740 | 244 | hypothetical protein; Provisional | 96.09 | |
| PRK06807 | 313 | DNA polymerase III subunit epsilon; Validated | 96.09 | |
| PRK05711 | 240 | DNA polymerase III subunit epsilon; Provisional | 96.07 | |
| KOG2405 | 458 | consensus Predicted 3'-5' exonuclease [Replication | 96.06 | |
| cd06131 | 167 | DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl | 96.03 | |
| cd06149 | 157 | ISG20 DEDDh 3'-5' exonuclease domain of Interferon | 95.89 | |
| TIGR01406 | 225 | dnaQ_proteo DNA polymerase III, epsilon subunit, P | 95.88 | |
| PF13482 | 164 | RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A | 95.8 | |
| cd06144 | 152 | REX4_like DEDDh 3'-5' exonuclease domain of RNA ex | 95.76 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 95.7 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 95.61 | |
| TIGR00573 | 217 | dnaq exonuclease, DNA polymerase III, epsilon subu | 95.59 | |
| PRK07883 | 557 | hypothetical protein; Validated | 95.33 | |
| PRK08517 | 257 | DNA polymerase III subunit epsilon; Provisional | 95.22 | |
| cd06145 | 150 | REX1_like DEDDh 3'-5' exonuclease domain of RNA ex | 95.18 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 94.89 | |
| cd06134 | 189 | RNaseT DEDDh 3'-5' exonuclease domain of RNase T. | 94.81 | |
| KOG2405 | 458 | consensus Predicted 3'-5' exonuclease [Replication | 94.71 | |
| cd06127 | 159 | DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh | 94.65 | |
| PRK09145 | 202 | DNA polymerase III subunit epsilon; Validated | 94.59 | |
| PRK09146 | 239 | DNA polymerase III subunit epsilon; Validated | 94.47 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 94.46 | |
| cd06136 | 177 | TREX1_2 DEDDh 3'-5' exonuclease domain of three pr | 94.45 | |
| smart00479 | 169 | EXOIII exonuclease domain in DNA-polymerase alpha | 94.42 | |
| cd05160 | 199 | DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain | 94.42 | |
| PRK06309 | 232 | DNA polymerase III subunit epsilon; Validated | 94.4 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 94.14 | |
| KOG2249 | 280 | consensus 3'-5' exonuclease [Replication, recombin | 94.12 | |
| cd06130 | 156 | DNA_pol_III_epsilon_like an uncharacterized bacter | 94.03 | |
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 93.04 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 92.77 | |
| PF11408 | 80 | Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR02 | 92.65 | |
| cd06143 | 174 | PAN2_exo DEDDh 3'-5' exonuclease domain of the euk | 92.37 | |
| cd05780 | 195 | DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom | 92.25 | |
| PRK07983 | 219 | exodeoxyribonuclease X; Provisional | 89.63 | |
| PRK09182 | 294 | DNA polymerase III subunit epsilon; Validated | 86.29 | |
| cd05784 | 193 | DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of | 84.7 | |
| PRK11779 | 476 | sbcB exonuclease I; Provisional | 84.64 | |
| COG0847 | 243 | DnaQ DNA polymerase III, epsilon subunit and relat | 84.64 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 84.08 | |
| PRK07247 | 195 | DNA polymerase III subunit epsilon; Validated | 83.53 | |
| cd05785 | 207 | DNA_polB_like2_exo Uncharacterized bacterial subgr | 82.25 |
| >KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-73 Score=630.37 Aligned_cols=390 Identities=46% Similarity=0.740 Sum_probs=355.9
Q ss_pred CcchhHhhhhhccCCCCCCCCCCceeeecccccCCCCCCCCCCCceeeeecccccccCCCCCCCCCcccccCCCCCCCCC
Q 003416 2 DVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ 81 (821)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~kPQ~~F~~~vdNs~~ 81 (821)
|.++|||+++|..|-+.... ++-+. -..|+++| ..+|.|||+.|+.+|||+++
T Consensus 87 d~~lDe~k~~~k~e~~~~~s-----------------~~~r~--------fsGKa~sp--~~~l~kpq~~f~~~idn~~~ 139 (687)
T KOG2206|consen 87 DHLLDELKRARKSESRGSPS-----------------EYDRE--------FSGKAKSP--TMNLLKPQVRFVEGIDNLHH 139 (687)
T ss_pred cchHHHHHhhhhccccCChh-----------------hhhhh--------ccccccCc--cccccchHHHHhhccccccC
Confidence 67899999999886442210 00000 00356667 88999999999999999999
Q ss_pred CCccccc---cccCCCCC-CCCCCC-ccccccccccccCCCCCCCCCCCCCCCcEEecCHHHHHHHHHHHhcCCeeEEEe
Q 003416 82 PFQHVWL---QKSEDSGR-FIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDL 156 (821)
Q Consensus 82 pf~~~~~---~~~~~~~~-~~hPye-~~~~~~~~~~~~~~~~p~~~~~l~~t~~~lIdT~e~L~~lle~L~~a~~IAVDt 156 (821)
||.|.+. ++.+++.+ +.|||+ .+.++.+++.+++..+|.++.+++.|++.||.+..+|.++.+.|....++|||+
T Consensus 140 pf~~~~~~~vEr~e~~~~~~~hpye~e~~~f~~~~~~le~~~~~~~~~le~T~~~~I~t~~el~~l~~~l~~~~Efavdl 219 (687)
T KOG2206|consen 140 PFCSMLASEVERLEDRPREVQHPYEDEERHFRQIDKQLEEGEPRKSSPLEITPKVWICTLGELEALPEILDSVIEFAVDL 219 (687)
T ss_pred CchhhhhhhhhchhhcchhccCcchhhhhhhcccchhhhcccccCCCcccccCceeeechHHHHHHHHHHhhhhhhhhhc
Confidence 9999998 88888887 999999 588899999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCCcEEEEEEEeCCceEEEecCCcchhhhHHHHHhhcCCCceEEEecchhcHHHHHHHhCCCcCccchhHHHH
Q 003416 157 EHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236 (821)
Q Consensus 157 E~~~~rty~g~LcLIQISt~~~~yLID~Lal~~~L~~~L~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~nlFDTqLAA 236 (821)
|||.+++|.|.+|||||+|++++||||++.++..+. +|+++|.||+|+||+||+..|+.||+++|||+++|+|||..|+
T Consensus 220 ehhsyrsf~gltclmqISTr~ed~iIDt~~l~~~i~-~l~e~fsdp~ivkvfhgaD~diiwlqrdfgiyvvnLfdt~~a~ 298 (687)
T KOG2206|consen 220 EHHSYRSFLGLTCLMQISTRTEDFIIDTFKLRDHIG-ILNEVFSDPGIVKVFHGADTDIIWLQRDFGIYVVNLFDTIQAS 298 (687)
T ss_pred cccchhhhcCceeEEEeeccchhheehhHHHHHHHH-HhhhhccCCCeEEEEecCccchhhhhccceEEEEechhhHHHH
Confidence 999999999999999999999999999999987776 8999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHH
Q 003416 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316 (821)
Q Consensus 237 yLLg~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLee~G~~~~~~~~~l~ev~ 316 (821)
++||.++++|++|++.|||+..+|.+|++||++|||+++|+.||..|+|||++||+.|+.+|.+.+. ++ . -++
T Consensus 299 r~L~~~r~sL~~ll~~~~~v~~nk~yqladwR~rpLp~~Mv~yar~dthyllyiyD~lr~el~~~a~---~~-~---~~~ 371 (687)
T KOG2206|consen 299 RLLGLPRPSLAYLLECVCGVLTNKKYQLADWRIRPLPEEMVRYAREDTHYLLYIYDVLRKELKRLAK---GR-A---VTY 371 (687)
T ss_pred HHhCCCcccHHHHHHHHHhhhhhhhhhhchhccccCcHHHHHHHhhcchhHHHHHHHHHHHHHHHhc---cc-c---ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999887652 11 1 234
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHH
Q 003416 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 396 (821)
Q Consensus 317 ~rs~e~~l~~yek~~~~e~~~~~i~~l~~~~l~~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~e 396 (821)
.+++++|...|.+++++...|+.++.+..+ ++..|+.+|++|++|||.+||.+|+|++|||||++|++||+.+|.+.+.
T Consensus 372 ~~~~d~c~~~~~k~~~~~~sy~~v~~~q~~-ln~~q~~~l~~L~~wRd~iARaeDES~~yVlpN~~ll~l~e~~P~~v~g 450 (687)
T KOG2206|consen 372 SESRDMCTNGYKKKTFCTKSYLEVEDIQSR-LNSSQLDVLRALLRWRDFIARAEDESVHYVLPNDQLLKLAEERPDTVDG 450 (687)
T ss_pred chhhhhhhcceecccCCCcchHhHHHHHhc-cchhHHHHHHHHHHHHHHHHhhccCCCceecccHHHHHHHHHCCccHHH
Confidence 478899999999999999999999887654 9999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHhHHHHHHHHHHhHhccc
Q 003416 397 LRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 427 (821)
Q Consensus 397 L~~l~g~~~~~vrr~g~eIL~iI~~a~~~~~ 427 (821)
|.+++...+++++++..+++.+|+.|+....
T Consensus 451 l~~~ln~~~p~vkq~~~~~~~ii~~a~~~~l 481 (687)
T KOG2206|consen 451 LLGGLNRLSPLVKQNVMDFLYIIRSAGRGFL 481 (687)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999988764
|
|
| >PRK10829 ribonuclease D; Provisional | Back alignment and domain information |
|---|
| >COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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| >TIGR01388 rnd ribonuclease D | Back alignment and domain information |
|---|
| >cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
|---|
| >cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
|---|
| >cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins | Back alignment and domain information |
|---|
| >PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides | Back alignment and domain information |
|---|
| >cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins | Back alignment and domain information |
|---|
| >cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins | Back alignment and domain information |
|---|
| >smart00474 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >cd00007 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
| >PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases | Back alignment and domain information |
|---|
| >cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases | Back alignment and domain information |
|---|
| >PF00570 HRDC: HRDC domain Bloom syndrome | Back alignment and domain information |
|---|
| >smart00341 HRDC Helicase and RNase D C-terminal | Back alignment and domain information |
|---|
| >KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00593 pola DNA polymerase I | Back alignment and domain information |
|---|
| >cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily | Back alignment and domain information |
|---|
| >KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >TIGR01298 RNaseT ribonuclease T | Back alignment and domain information |
|---|
| >PRK07942 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK06310 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05168 ribonuclease T; Provisional | Back alignment and domain information |
|---|
| >cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins | Back alignment and domain information |
|---|
| >PRK07740 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06807 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05711 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins | Back alignment and domain information |
|---|
| >cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial | Back alignment and domain information |
|---|
| >PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A | Back alignment and domain information |
|---|
| >cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family | Back alignment and domain information |
|---|
| >PRK07883 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08517 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T | Back alignment and domain information |
|---|
| >KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd06127 DEDDh DEDDh 3'-5' exonuclease domain family | Back alignment and domain information |
|---|
| >PRK09145 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK09146 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins | Back alignment and domain information |
|---|
| >smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases | Back alignment and domain information |
|---|
| >cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >PRK06309 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner | Back alignment and domain information |
|---|
| >cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 | Back alignment and domain information |
|---|
| >cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >PRK07983 exodeoxyribonuclease X; Provisional | Back alignment and domain information |
|---|
| >PRK09182 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >PRK11779 sbcB exonuclease I; Provisional | Back alignment and domain information |
|---|
| >COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07247 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 821 | ||||
| 3saf_A | 428 | Crystal Structure Of The Human Rrp6 Catalytic Domai | 3e-79 | ||
| 3sah_A | 428 | Crystal Structure Of The Human Rrp6 Catalytic Domai | 1e-78 | ||
| 2hbj_A | 410 | Structure Of The Yeast Nuclear Exosome Component, R | 7e-52 | ||
| 3cym_A | 440 | Crystal Structure Of Protein Bad_0989 From Bifidoba | 4e-14 | ||
| 2cpr_A | 124 | Solution Structure Of The Hrdc Domain Of Human Exos | 4e-10 | ||
| 1yt3_A | 375 | Crystal Structure Of Escherichia Coli Rnase D, An E | 4e-08 |
| >pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With D313n Mutation In The Active Site Length = 428 | Back alignment and structure |
|
| >pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With Y436a Mutation In The Catalytic Site Length = 428 | Back alignment and structure |
| >pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain Length = 410 | Back alignment and structure |
| >pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium Adolescentis Length = 440 | Back alignment and structure |
| >pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome Component 10 Length = 124 | Back alignment and structure |
| >pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An Exoribonuclease Involved In Structured Rna Processing Length = 375 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-121
Identities = 159/432 (36%), Positives = 235/432 (54%), Gaps = 47/432 (10%)
Query: 64 TITKPQEEYKIVVNNANQPFQ--------------------------------------- 84
+I +PQ +++ ++N+N PF
Sbjct: 1 SIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 85 ---HVWLQKSEDSGRFIHPLDN-LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLK 140
H + + F HP L+ D + + +E+TP + + +L
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 141 ELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFK 200
EL KL + EFAV+LEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYI-LNESLT 179
Query: 201 DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 260
DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +C V++NK
Sbjct: 180 DPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239
Query: 261 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 320
+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M++++ + L V++RS
Sbjct: 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW---ERGNGQPVQLQVVWQRSR 296
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
D+C + + K + ++ SYL +Y Q LN QQL L WRD AR +DES GYVLPN
Sbjct: 297 DICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPN 356
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEER 440
+++IA++LP + + + + + +I+ + + +A +K+
Sbjct: 357 HMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSG 416
Query: 441 MEVASEETEVLV 452
++E E ++
Sbjct: 417 PLPSAERLENVL 428
|
| >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410 | Back alignment and structure |
|---|
| >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440 | Back alignment and structure |
|---|
| >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375 | Back alignment and structure |
|---|
| >2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 | Back alignment and structure |
|---|
| >3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ... Length = 592 | Back alignment and structure |
|---|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Length = 605 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 821 | |||
| 3saf_A | 428 | Exosome component 10; exoribonuclease, RNA exosome | 100.0 | |
| 2hbj_A | 410 | Exosome complex exonuclease RRP6; RNA metabolism, | 100.0 | |
| 1yt3_A | 375 | Ribonuclease D, RNAse D; exoribonuclease, exonucle | 100.0 | |
| 3cym_A | 440 | Uncharacterized protein BAD_0989; structural genom | 100.0 | |
| 2e6m_A | 208 | Werner syndrome ATP-dependent helicase homolog; AP | 99.94 | |
| 1vk0_A | 206 | Hypothetical protein; homohexamer, AT5G06450, stru | 99.94 | |
| 2kfn_A | 605 | Klenow fragment of DNA polymerase I; complex (poly | 99.76 | |
| 3pv8_A | 592 | DNA polymerase I; DNA polymerase I, protein-DNA co | 99.69 | |
| 1wud_A | 89 | ATP-dependent DNA helicase RECQ; DNA-binding domai | 99.49 | |
| 1x9m_A | 698 | DNA polymerase; DNA ploymerase, N-2-acetylaminoflu | 99.47 | |
| 2rhf_A | 77 | DNA helicase RECQ; HRDC, D. radiodurans, ATP-bindi | 99.45 | |
| 2kv2_A | 85 | Bloom syndrome protein; HRDC domain, disease mutat | 99.39 | |
| 2rrd_A | 101 | BLM HRDC domain, HRDC domain from bloom syndrome p | 99.38 | |
| 4dfk_A | 540 | DNA polymerase I, thermostable; DNA polymerase, tr | 99.34 | |
| 2e1f_A | 103 | Werner syndrome ATP-dependent helicase; HRDC domai | 99.31 | |
| 2dgz_A | 113 | Werner syndrome protein variant; HRDC domain, stru | 99.31 | |
| 3v9w_A | 235 | Ribonuclease T; DEDD nucleases family, EXO-nucleas | 98.26 | |
| 1bgx_T | 832 | TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi | 98.2 | |
| 2f96_A | 224 | Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas | 97.12 | |
| 2p1j_A | 186 | POLIII, DNA polymerase III POLC-type; structural g | 96.87 | |
| 3mxm_B | 242 | Three prime repair exonuclease 1; RNAse H-like fol | 96.79 | |
| 1wlj_A | 189 | Interferon stimulated gene 20KDA; exoribonuclease, | 96.6 | |
| 1y97_A | 238 | Three prime repair exonuclease 2; TREX2, hydrolase | 96.37 | |
| 3u3y_B | 314 | Three prime repair exonuclease 1; RNAse H fold, 3' | 96.19 | |
| 2gui_A | 194 | DNA polymerase III epsilon subunit; DNA polymerase | 95.89 | |
| 1d8b_A | 81 | SGS1 RECQ helicase; five helices, three-helical bu | 94.89 | |
| 2qxf_A | 482 | Exodeoxyribonuclease I; alpha-beta domain, DNAQ su | 94.36 | |
| 1zbh_A | 299 | 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif | 92.67 | |
| 1w0h_A | 204 | 3'-5' exonuclease ERI1; nuclease domain, hydrolase | 91.08 |
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-65 Score=567.10 Aligned_cols=369 Identities=43% Similarity=0.726 Sum_probs=334.9
Q ss_pred CCCCcccccCCCCCCCCCCCcccccccc----------------------C--------------------CCCCCCCCC
Q 003416 64 TITKPQEEYKIVVNNANQPFQHVWLQKS----------------------E--------------------DSGRFIHPL 101 (821)
Q Consensus 64 ~i~kPQ~~F~~~vdNs~~pf~~~~~~~~----------------------~--------------------~~~~~~hPy 101 (821)
.|.|||+.|+++||||++||+|++.+|+ + +...|.|||
T Consensus 1 ~i~~pq~~f~~~~dn~~~p~~p~~~~kp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hpy 80 (428)
T 3saf_A 1 SIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPY 80 (428)
T ss_dssp CCCCGGGGCSSCCCCSSSCCCCCCCCCTTCSSCCCGGGSGGGC-----------------------------CCSSSCTT
T ss_pred CCCCchhccCCCCCCCCCCCCCccCCCCcccCCHHHHhhhhhhcccccCcccccccchhhhccccccccccCCCCCCCCh
Confidence 5899999999999999999999875442 1 123588999
Q ss_pred Cc-cccccccccccCCCCCCCCCCCCCCCcEEecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEeCCceE
Q 003416 102 DN-LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180 (821)
Q Consensus 102 e~-~~~~~~~~~~~~~~~p~~~~~l~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt~~~~y 180 (821)
++ |..++|+++++...+|+++.+++.++|.+|+|.++|..+|+.+.....||||+|+++.++|++.+|+|||++.+.+|
T Consensus 81 ~~ei~~~~~~~~~~~~~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~ 160 (428)
T 3saf_A 81 QYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDF 160 (428)
T ss_dssp HHHHHTCCCCHHHHSCCCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCEE
T ss_pred HHHHhcCCCCHHHhCcCCCCCCCCCCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcEE
Confidence 96 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcchhhhHHHHHhhcCCCceEEEecchhcHHHHHHHhCCCcCccchhHHHHHhhCCCCCcHHHHHHHHcCCCCcc
Q 003416 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 260 (821)
Q Consensus 181 LID~Lal~~~L~~~L~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK 260 (821)
+||++.++..+ ..|+++|+|++|.||+|++++|+.+|++.+|+.+.++||||+|+|+|+++++||+.|+++|||+.++|
T Consensus 161 lidpl~l~~~l-~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 161 IIDTLELRSDM-YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp EEETTTTGGGG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred EEEeccchhhH-HHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCc
Confidence 99999875344 46899999999999999999999999889999999999999999999998899999999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 003416 261 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340 (821)
Q Consensus 261 ~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLee~G~~~~~~~~~l~ev~~rs~e~~l~~yek~~~~e~~~~~i 340 (821)
+.+.+||..|||+++|+.||+.||+|+++||+.|..+|.+.|+. ..+|+..++.++..+|++.|+++...+..|.++
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNG---QPVQLQVVWQRSRDICLKKFIKPIFTDESYLEL 316 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHHHHHhhcCCCCCcccHHHH
Confidence 99999999999999999999999999999999999999987631 235899999999999988887766667778777
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHH
Q 003416 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420 (821)
Q Consensus 341 ~~l~~~~l~~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~ 420 (821)
.+...+.++++|+++|++|++||+++||++|+|+++||+|++|++||+.+|+|..+|.+|+|++...+++||++|+++|+
T Consensus 317 ~~~~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~ 396 (428)
T 3saf_A 317 YRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQ 396 (428)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHH
T ss_pred HHHhccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 54334589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcccchHHHHHHH
Q 003416 421 NSMQNAANFEVIAQKL 436 (821)
Q Consensus 421 ~a~~~~~~~~al~elL 436 (821)
++.+.+.....+...+
T Consensus 397 ~a~~~p~~~~~~~~~~ 412 (428)
T 3saf_A 397 QAREMPLLKSEVAAGV 412 (428)
T ss_dssp HHHTSCCCHHHHCC--
T ss_pred HHHhCCCcCcchhhhh
Confidence 9999998876654443
|
| >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* | Back alignment and structure |
|---|
| >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 | Back alignment and structure |
|---|
| >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} | Back alignment and structure |
|---|
| >2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* | Back alignment and structure |
|---|
| >1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A | Back alignment and structure |
|---|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* | Back alignment and structure |
|---|
| >3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... | Back alignment and structure |
|---|
| >1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* | Back alignment and structure |
|---|
| >2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... | Back alignment and structure |
|---|
| >2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A | Back alignment and structure |
|---|
| >2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A | Back alignment and structure |
|---|
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* | Back alignment and structure |
|---|
| >2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
| >3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A | Back alignment and structure |
|---|
| >1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* | Back alignment and structure |
|---|
| >2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* | Back alignment and structure |
|---|
| >1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* | Back alignment and structure |
|---|
| >1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 821 | ||||
| d2hbka2 | 292 | c.55.3.5 (A:129-420) Exosome complex exonuclease R | 9e-46 | |
| d1vk0a_ | 206 | c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal | 5e-33 | |
| d1yt3a3 | 193 | c.55.3.5 (A:1-193) Ribonuclease D, catalytic domai | 2e-28 | |
| d2cpra1 | 113 | a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 | 3e-22 | |
| d1kfsa1 | 195 | c.55.3.5 (A:324-518) Exonuclease domain of prokary | 2e-19 | |
| d2hbka1 | 96 | a.60.8.4 (A:421-516) Exosome complex exonuclease R | 3e-15 | |
| d1yt3a1 | 101 | a.60.8.3 (A:194-294) Ribonuclease D {Escherichia c | 2e-12 | |
| d2hhva1 | 171 | c.55.3.5 (A:298-468) Exonuclease domain of prokary | 4e-12 | |
| d1wuda1 | 77 | a.60.8.1 (A:530-606) HRDC domain from RecQ helicas | 7e-05 | |
| d2e1fa1 | 94 | a.60.8.1 (A:1142-1235) Werner syndrome ATP-depende | 8e-05 |
| >d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exosome complex exonuclease RRP6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 163 bits (414), Expect = 9e-46
Identities = 103/285 (36%), Positives = 151/285 (52%), Gaps = 28/285 (9%)
Query: 65 ITKPQEEYKIVVNNANQ---------------PFQHVWLQKSEDSG---RFIHPLDN-LS 105
+ KPQ ++K ++N+ P +D + HP + +
Sbjct: 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 60
Query: 106 VLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
++ + + E + S + + V+ +L+ + LK+ E AVDLEH+ YRS+
Sbjct: 61 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 120
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
G+ CLMQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y
Sbjct: 121 GIVCLMQISTRERDYLVDTLKLRENLHI-LNEVFTNPSIVKVFHGAFMDIIWLQRDLGLY 179
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+ +FDT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M AR DTH
Sbjct: 180 VVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTH 239
Query: 286 YLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
+LL IYD ++ KL K L V S +V ++ +E
Sbjct: 240 FLLNIYDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYS 276
|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 | Back information, alignment and structure |
|---|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Length = 193 | Back information, alignment and structure |
|---|
| >d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Length = 195 | Back information, alignment and structure |
|---|
| >d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96 | Back information, alignment and structure |
|---|
| >d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Length = 171 | Back information, alignment and structure |
|---|
| >d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} Length = 77 | Back information, alignment and structure |
|---|
| >d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 821 | |||
| d2hbka2 | 292 | Exosome complex exonuclease RRP6 {Baker's yeast (S | 100.0 | |
| d1yt3a3 | 193 | Ribonuclease D, catalytic domain {Escherichia coli | 100.0 | |
| d1vk0a_ | 206 | Hypothetical protein AT5G06450 {Thale-cress (Arabi | 99.91 | |
| d1kfsa1 | 195 | Exonuclease domain of prokaryotic DNA polymerase { | 99.9 | |
| d2hhva1 | 171 | Exonuclease domain of prokaryotic DNA polymerase { | 99.79 | |
| d2cpra1 | 113 | Exosome component 10, EXOSC10 {Human (Homo sapiens | 99.73 | |
| d1yt3a1 | 101 | Ribonuclease D {Escherichia coli [TaxId: 562]} | 99.69 | |
| d2hbka1 | 96 | Exosome complex exonuclease RRP6 domain {Baker's y | 99.66 | |
| d1wuda1 | 77 | HRDC domain from RecQ helicase {Escherichia coli [ | 99.37 | |
| d2e1fa1 | 94 | Werner syndrome ATP-dependent helicase, WRN {Human | 99.22 | |
| d1wlja_ | 173 | Interferon-stimulated gene 20 kDa protein, ISG20 { | 97.67 | |
| d1yt3a2 | 81 | Ribonuclease D {Escherichia coli [TaxId: 562]} | 97.53 | |
| d1x9ma1 | 204 | Exonuclease domain of T7 DNA polymerase {Bacteriop | 96.85 | |
| d3b6oa1 | 226 | Three prime repair exonuclease 1, TREX1 {Mouse (Mu | 95.35 | |
| d1y97a1 | 228 | Three prime repair exonuclease 2, TREX2 {Human (Ho | 92.76 | |
| d1tgoa1 | 347 | Exonuclease domain of family B DNA polymerases {Ar | 89.29 | |
| d2guia1 | 174 | N-terminal exonuclease domain of the epsilon subun | 89.05 |
| >d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exosome complex exonuclease RRP6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.3e-52 Score=440.22 Aligned_cols=258 Identities=40% Similarity=0.687 Sum_probs=237.8
Q ss_pred CCCcccccCCCCCCCC-CCCccccccccC-----------------CCCCCCCCCCc-cccccccccccCCCCCCCCCCC
Q 003416 65 ITKPQEEYKIVVNNAN-QPFQHVWLQKSE-----------------DSGRFIHPLDN-LSVLDFVDKDIGDVEAVKPPSL 125 (821)
Q Consensus 65 i~kPQ~~F~~~vdNs~-~pf~~~~~~~~~-----------------~~~~~~hPye~-~~~~~~~~~~~~~~~p~~~~~l 125 (821)
|+|||+.|+++||||+ .||.|++.+|+. +...+.|||++ |..+.++++++...+|+++.++
T Consensus 1 i~~pq~~f~~~~dn~~~~pf~p~l~~k~~a~~~l~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~~~~~~~~ 80 (292)
T d2hbka2 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSW 80 (292)
T ss_dssp CCCGGGGCSSCCCCCCCSCCCCCCSCCSSCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCCCGGGSSCCCCCCCCCG
T ss_pred CCChhhhcCCCCCCCCCCCCccccccCCCcCccchhhhcccccccCCCccCCCCCHHHHhcCCCChhhcCcCCCCCCCCC
Confidence 7899999999999996 599999876531 12358899996 8888999999999999999999
Q ss_pred CCCCcEEecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEeCCceEEEecCCcchhhhHHHHHhhcCCCce
Q 003416 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205 (821)
Q Consensus 126 ~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt~~~~yLID~Lal~~~L~~~L~eLLeDp~Iv 205 (821)
++++++||+|.++|.++++.|..+..||||+||+++++|.|.+|||||++++.+||||+++++..+ ..|+++|+|++|+
T Consensus 81 ~~t~~~~Vdt~e~L~~li~~L~~~~~iavDtE~~~~~s~~g~l~LiQiat~~~~~iiD~~~l~~~l-~~L~~ll~d~~I~ 159 (292)
T d2hbka2 81 DDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENL-HILNEVFTNPSIV 159 (292)
T ss_dssp GGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTG-GGGHHHHTCTTSE
T ss_pred CCCCcEEeCCHHHHHHHHHHHhcCCcEEEEEEeCcCcccCCeEEEEEEEeCCccEEEEecccccch-HHHHHHHhccCeE
Confidence 999999999999999999999999999999999999999999999999999999999999887555 4699999999999
Q ss_pred EEEecchhcHHHHHHHhCCCcCccchhHHHHHhhCCCCCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhH
Q 003416 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285 (821)
Q Consensus 206 KV~H~aK~DL~~L~rd~GI~~~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~ 285 (821)
||+|++++|+.||++++|+++.++|||++|+++|+..++||++|+++|||+.++|.+|++||++|||+++|+.||+.||+
T Consensus 160 KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~~~~~sL~~L~~~yl~~~ldK~~q~SdW~~RPLs~~qi~YAa~Da~ 239 (292)
T d2hbka2 160 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTH 239 (292)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHH
T ss_pred EEeechHhhhhhhhhcccccccchHHHHHHHHHhCccccchHHHHHHhhhhcccccccccccccCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcc
Q 003416 286 YLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331 (821)
Q Consensus 286 yLL~Lyd~L~~eLee~G~~~~~~~~~l~ev~~rs~e~~l~~yek~~ 331 (821)
||++||+.|+++|.+.+ .+..++.+++.+|+++|++..
T Consensus 240 ~Ll~ly~~L~~~L~~~~--------~l~~v~~e~~~~~~~~~e~~~ 277 (292)
T d2hbka2 240 FLLNIYDQLRNKLIESN--------KLAGVLYESRNVAKRRFEYSK 277 (292)
T ss_dssp THHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCEECCGG
T ss_pred HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999764 356667788899999887653
|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|