Citrus Sinensis ID: 003422

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-

MAELQSGGGGGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE

cccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEEcccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc

ccHHHccccccccccccHcccHHHHHHHHHccHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccHHccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHEEEEEcccHHHHHHHHHHHHHHHHccccccHHHEEcccccccccccccHHHHHHHHHHHHHHccccEEEcccccEEEEEcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHEHEEHHHHHHHHHHEEccHccccccEcccccccccccccccccccccEcccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHEEEEEEEHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccc

maelqsgggggccppmdlfrsepmQLVQIIIPIESAHLTVSYLGELgllqfkdlnsekspfqRTYAAQIKKCAEMARKLRFFKEQMLKAGILSsvksttradnntddlEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMEsqqtgemtietplltdkemsadpskqiKLGFIaglvpreksMSFERMLFRATRGNVFlrqavvdepvvdpvsgekmeKNVFVVFYSGERAKNKILKICDafganrypfneefDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLsldvtkkclvgegwspvfATKQDALEraafdsnsqvGAIFQVLhtkespptyfrtnkfTSAFQEIVDAYGVakyreanpgvftivTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLAsqkldditdmtfGGRYVILMMALFSIYTGliyneffsvpfeifshsayacrdlscseattvglikvrdtypfgvdpvwhgsrselpflNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFlsptdelgdnqlfpgqKTAQLVLLLLAFVsvpwmllpkpfilkmqhqdrhqgqsyealqstdeslqpdtnhdshgheefeFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNkfyegdgykfspfsfallddede

maelqsgggggCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAgilssvksttradnntdDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEpvvdpvsgekmeKNVFVVfysgeraknKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKlasqkldditdmtFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPfsfallddede

MAELQSGGGGGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDshgheefefsevfvhQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWgynnililivgiivfifATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE

**********************PMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILS***************EVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFS************************************************************MLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKM**********************************FEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALL*****

*****************LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQML******************DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAA*************MTIETPL**********SKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKM*******************************HEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALL*****

*********GGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSA*****************EMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQ*****************************GHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE

************CP**DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTS********************************SKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRH***************************EFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLD****

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MAELQSGGGGGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNxxxxxxxxxxxxxxxxxxxxxxxxxxxxHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		821	2.2.26 [Sep-21-2011]
Q8W4S4		821	Vacuolar proton ATPase a3	yes	no	0.980	0.980	0.805	0.0
Q9SJT7		821	Vacuolar proton ATPase a2	no	no	0.980	0.980	0.787	0.0
Q8RWZ7		817	Vacuolar proton ATPase a1	no	no	0.978	0.982	0.642	0.0
Q54E04		815	Vacuolar proton transloca	yes	no	0.954	0.961	0.453	0.0
Q9Z1G4		839	V-type proton ATPase 116	yes	no	0.951	0.930	0.435	0.0
Q9HBG4		840	V-type proton ATPase 116	yes	no	0.958	0.936	0.431	0.0
P25286		838	V-type proton ATPase 116	yes	no	0.946	0.927	0.425	0.0
Q8AVM5		831	V-type proton ATPase 116	N/A	no	0.943	0.932	0.434	0.0
Q920R6		833	V-type proton ATPase 116	no	no	0.948	0.935	0.432	0.0
Q93050		837	V-type proton ATPase 116	no	no	0.950	0.931	0.423	0.0

>sp\|Q8W4S4\|VHAA3_ARATH Vacuolar proton ATPase a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1	Back alignment and function desciption

 Score = 1332 bits (3447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/809 (80%), Positives = 726/809 (89%), Gaps = 4/809 (0%)

Query: 16  MDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEM 75
           MDL RSE MQLVQ+I+P+ESAHLTVSYLG+LGL+QFKDLNSEKSPFQRTYAAQIK+C EM
Sbjct: 14  MDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEM 73

Query: 76  ARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSE 135
           ARK+RFF++QM KAG+ +        D + DD+EVKLG+LEAELVEINAN DKLQR+++E
Sbjct: 74  ARKIRFFRDQMSKAGVPAKEMQGKENDIDLDDVEVKLGELEAELVEINANNDKLQRSYNE 133

Query: 136 LVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLG 195
           L+EYKLVLQKAGEFFSSA  SAA QQRE ESQQ GE  +E+PLL + E S D +KQ+KLG
Sbjct: 134 LMEYKLVLQKAGEFFSSAHRSAADQQRETESQQAGEDLLESPLLQE-EKSIDSTKQVKLG 192

Query: 196 FIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERA 255
           F+ GLVPREKSM FER+LFRATRGN+F+RQ V++EPV+DP SGEK EKNVFVVFYSGERA
Sbjct: 193 FLTGLVPREKSMVFERILFRATRGNIFIRQTVIEEPVIDPNSGEKAEKNVFVVFYSGERA 252

Query: 256 KNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQ 315
           K+KILKIC+AFGANRYPF+E+  +QAQ I+EVSGRLSELKTT+DAGL  R  LLQTIGD+
Sbjct: 253 KSKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDAGLGQRNILLQTIGDK 312

Query: 316 FEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATK--QDALERAAFDSNSQVG 373
           FE WNL V+KEK+IYHTLNMLSLDVTKKCLV EGWSPVFA++  QDAL+RAA DSNSQVG
Sbjct: 313 FELWNLKVRKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFASREIQDALQRAAVDSNSQVG 372

Query: 374 AIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGD 433
           +IFQVL TKESPPTYFRTNKFTSA QEIVDAYGVAKY+EANPGVFTIVTFPFLFAVMFGD
Sbjct: 373 SIFQVLRTKESPPTYFRTNKFTSAIQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGD 432

Query: 434 WGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSV 493
           WGHGIC+LL T+ LI++EKKLASQKL DI +M FGGRYVILMM+LFSIYTGLIYNEFFS+
Sbjct: 433 WGHGICILLATMYLILKEKKLASQKLGDIMEMAFGGRYVILMMSLFSIYTGLIYNEFFSI 492

Query: 494 PFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSIL 553
           PF +F+ SAY CRD+SCSEATT+GLIKVRDTYPFG+DPVWHGSRSELPFLNSLKMKMSIL
Sbjct: 493 PFPLFAPSAYDCRDVSCSEATTIGLIKVRDTYPFGLDPVWHGSRSELPFLNSLKMKMSIL 552

Query: 554 LGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADL 613
           LGV+QMNLGII+SYFNA FF+  VNIW QFIPQ+IFLNSLFGYLS+LII+KW TGSQADL
Sbjct: 553 LGVSQMNLGIIMSYFNARFFKSSVNIWFQFIPQMIFLNSLFGYLSVLIIIKWCTGSQADL 612

Query: 614 YHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQG 673
           YHVMIYMFLSP DELG+NQLFP QKT QLVLL LA VSVP MLLPKPFILK QH+ RHQG
Sbjct: 613 YHVMIYMFLSPMDELGENQLFPHQKTLQLVLLFLALVSVPCMLLPKPFILKKQHEARHQG 672

Query: 674 QSYEALQSTDESLQPDTN-HDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWA 732
           Q+Y  L  TDESL  +TN   SHGHEEFEFSE+FVHQ+IHTIEFVLGAVSNTASYLRLWA
Sbjct: 673 QAYAPLDETDESLHVETNGGGSHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWA 732

Query: 733 LSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLH 792
           LSLAHSELSSVFYEKVLLLAWGYNN LILIVG++VFIFATVGVLLVMETLSAFLHALRLH
Sbjct: 733 LSLAHSELSSVFYEKVLLLAWGYNNPLILIVGVLVFIFATVGVLLVMETLSAFLHALRLH 792

Query: 793 WVEFQNKFYEGDGYKFSPFSFALLDDEDE 821
           WVEFQNKFYEGDGYKF+PF+F    +EDE
Sbjct: 793 WVEFQNKFYEGDGYKFAPFTFIFTANEDE 821

Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Involved in vacuolar nutrient storage (e.g. accumulation and storage of nitrate) and in tolerance to some toxic ions (e.g. zinc ions sequestration in vacuoles).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SJT7\|VHAA2_ARATH Vacuolar proton ATPase a2 OS=Arabidopsis thaliana GN=VHA-a2 PE=1 SV=1	Back alignment and function description

>sp\|Q8RWZ7\|VHAA1_ARATH Vacuolar proton ATPase a1 OS=Arabidopsis thaliana GN=VHA-a1 PE=1 SV=1	Back alignment and function description

>sp\|Q54E04\|VATM_DICDI Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2	Back alignment and function description

>sp\|Q9Z1G4\|VPP1_MOUSE V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=3	Back alignment and function description

>sp\|Q9HBG4\|VPP4_HUMAN V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=2	Back alignment and function description

>sp\|P25286\|VPP1_RAT V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|Q8AVM5\|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|Q920R6\|VPP4_MOUSE V-type proton ATPase 116 kDa subunit a isoform 4 OS=Mus musculus GN=Atp6v0a4 PE=2 SV=1	Back alignment and function description

>sp\|Q93050\|VPP1_HUMAN V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		821
224103357		821	predicted protein [Populus trichocarpa]	0.997	0.997	0.827	0.0
356545106		818	PREDICTED: vacuolar proton translocating	0.986	0.990	0.817	0.0
224080403		821	predicted protein [Populus trichocarpa]	0.997	0.997	0.816	0.0
356538733		818	PREDICTED: V-type proton ATPase 116 kDa	0.986	0.990	0.816	0.0
255543805		814	vacuolar proton atpase, putative [Ricinu	0.987	0.996	0.842	0.0
225427716		822	PREDICTED: vacuolar proton translocating	0.986	0.985	0.828	0.0
357473431		822	V-type proton ATPase 116 kDa subunit a i	0.989	0.987	0.8	0.0
33945876		815	vacuolar proton-ATPase subunit-like prot	0.979	0.986	0.803	0.0
164605517		815	CM0216.490.nc [Lotus japonicus]	0.979	0.986	0.801	0.0
297797892		820	VHA-A3 [Arabidopsis lyrata subsp. lyrata	0.980	0.981	0.801	0.0

>gi\|224103357\|ref\|XP_002313024.1\| predicted protein [Populus trichocarpa] gi\|222849432\|gb\|EEE86979.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1401 bits (3627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/823 (82%), Positives = 752/823 (91%), Gaps = 4/823 (0%)

Query: 1   MAELQSGGGGGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSP 60
           MAE ++GGG  CCPPMDLFRSE MQLVQ+IIPIESAH TVSYLG+LGLLQFKDLN++KSP
Sbjct: 1   MAEARAGGG--CCPPMDLFRSEAMQLVQLIIPIESAHHTVSYLGDLGLLQFKDLNADKSP 58

Query: 61  FQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELV 120
           FQRTYAAQIKK  EMARKLRFFKEQM+KAGI+   K   + + + DDLEVKLG+LEAELV
Sbjct: 59  FQRTYAAQIKKFGEMARKLRFFKEQMVKAGIIPLTKPGAQNEIDVDDLEVKLGELEAELV 118

Query: 121 EINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLT 180
           E+NAN +KLQR+++ELVEYKLVL KAGEFFSSAL +A A Q+E+ESQQTGE +++ PLL 
Sbjct: 119 EMNANNEKLQRSYNELVEYKLVLNKAGEFFSSALRNATALQKELESQQTGEESLDAPLLQ 178

Query: 181 DKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEK 240
           DKE+  + SKQ+KLGFI GLVP+EKSM FER++FRATRGNV++RQA V+EPVVDPVSGEK
Sbjct: 179 DKEILNESSKQVKLGFITGLVPKEKSMPFERIIFRATRGNVYIRQAAVEEPVVDPVSGEK 238

Query: 241 MEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDA 300
           +EKNV+VVFYSGE+AK KILKIC+AFGANRYPF E+F KQ Q ISEVSGR+SE+K  +DA
Sbjct: 239 VEKNVYVVFYSGEKAKTKILKICEAFGANRYPFTEDFGKQIQMISEVSGRISEMKAAIDA 298

Query: 301 GLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQ-- 358
           GL HR +LLQTIGDQF QWN LV+KEKSIYHTLNMLSLDVTKKCLV EGWSPVF TKQ  
Sbjct: 299 GLFHRSHLLQTIGDQFVQWNTLVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFGTKQIQ 358

Query: 359 DALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVF 418
           DAL+RAAFDSNSQVG IFQVLHT E PPTYFRTNKFTSAFQ+IVDAYGVAKY+EANPGV+
Sbjct: 359 DALQRAAFDSNSQVGTIFQVLHTTELPPTYFRTNKFTSAFQDIVDAYGVAKYQEANPGVY 418

Query: 419 TIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMAL 478
           TIVTFPFLFAVMFGDWGHGIC+LL TLV I+REKKL+ QKL DIT+MTFGGRYVILMMAL
Sbjct: 419 TIVTFPFLFAVMFGDWGHGICMLLATLVFIIREKKLSGQKLGDITEMTFGGRYVILMMAL 478

Query: 479 FSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRS 538
           FSIYTGLIYNEFFSVPFE+F+ SAYACRDLSC +ATT GLIKVR TYPFGVDPVWHGSRS
Sbjct: 479 FSIYTGLIYNEFFSVPFELFAPSAYACRDLSCRDATTEGLIKVRPTYPFGVDPVWHGSRS 538

Query: 539 ELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLS 598
           ELPFLNSLKMKMSILLGVAQMNLGIILSYFNAT+F+  +NIW QFIPQ+IFLNSLFGYLS
Sbjct: 539 ELPFLNSLKMKMSILLGVAQMNLGIILSYFNATYFKNSLNIWFQFIPQMIFLNSLFGYLS 598

Query: 599 LLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLP 658
           LLII+KW TGSQADLYHVMIYMFLSPTDELG+N+LFP QKT Q+VLLLLA VSVPWMLLP
Sbjct: 599 LLIIVKWSTGSQADLYHVMIYMFLSPTDELGENELFPRQKTVQVVLLLLALVSVPWMLLP 658

Query: 659 KPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVL 718
           KPF+LK QH+ RHQG+SY  LQST+ESLQ +TNHDSHGHEEFEFSEVFVHQMIHTIEFVL
Sbjct: 659 KPFLLKKQHEARHQGESYTPLQSTEESLQLETNHDSHGHEEFEFSEVFVHQMIHTIEFVL 718

Query: 719 GAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLV 778
           GAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGY+NI IL++G IVFIFATVGVLLV
Sbjct: 719 GAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYHNIFILVIGAIVFIFATVGVLLV 778

Query: 779 METLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE 821
           METLSAFLHALRLHWVEFQNKFYEGDGYKF PFSFAL++DEDE
Sbjct: 779 METLSAFLHALRLHWVEFQNKFYEGDGYKFYPFSFALVNDEDE 821

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356545106\|ref\|XP_003540986.1\| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit-like [Glycine max]	Back alignment and taxonomy information

>gi\|224080403\|ref\|XP_002306128.1\| predicted protein [Populus trichocarpa] gi\|222849092\|gb\|EEE86639.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356538733\|ref\|XP_003537855.1\| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|255543805\|ref\|XP_002512965.1\| vacuolar proton atpase, putative [Ricinus communis] gi\|223547976\|gb\|EEF49468.1\| vacuolar proton atpase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225427716\|ref\|XP_002265086.1\| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera] gi\|297744757\|emb\|CBI38019.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357473431\|ref\|XP_003607000.1\| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula] gi\|355508055\|gb\|AES89197.1\| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula]	Back alignment and taxonomy information

>gi\|33945876\|emb\|CAE45587.1\| vacuolar proton-ATPase subunit-like protein [Lotus japonicus]	Back alignment and taxonomy information

>gi\|164605517\|dbj\|BAF98583.1\| CM0216.490.nc [Lotus japonicus]	Back alignment and taxonomy information

>gi\|297797892\|ref\|XP_002866830.1\| VHA-A3 [Arabidopsis lyrata subsp. lyrata] gi\|297312666\|gb\|EFH43089.1\| VHA-A3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		821
TAIR\|locus:2120217		821	VHA-A3 "vacuolar proton ATPase	0.996	0.996	0.773	0.0
TAIR\|locus:2050085		821	VHA-A2 "vacuolar proton ATPase	0.997	0.997	0.756	0.0
TAIR\|locus:2056598		817	VHA-A1 "vacuolar proton ATPase	0.978	0.982	0.618	2.1e-267
UNIPROTKB\|F1NLH4		802	ATP6V0A1 "V-type proton ATPase	0.696	0.713	0.424	2.8e-176
FB\|FBgn0032373		814	Vha100-5 "Vacuolar H[+] ATPase	0.700	0.706	0.403	1.1e-168
DICTYBASE\|DDB_G0291858		817	vatM "vacuolar proton ATPase 1	0.951	0.955	0.443	2.5e-168
MGI\|MGI:103286		839	Atp6v0a1 "ATPase, H+ transport	0.702	0.687	0.428	3.1e-166
UNIPROTKB\|F1PVU4		839	ATP6V0A1 "Uncharacterized prot	0.710	0.694	0.424	3.1e-164
UNIPROTKB\|F1S1D6		832	LOC100523018 "Uncharacterized	0.697	0.688	0.426	1.4e-163
UNIPROTKB\|F1MH43		832	LOC785923 "Uncharacterized pro	0.697	0.688	0.428	1.7e-163

TAIR\|locus:2120217 VHA-A3 "vacuolar proton ATPase A3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3261 (1153.0 bits), Expect = 0., P = 0.
 Identities = 637/824 (77%), Positives = 708/824 (85%)

Query:     1 MAELQSGGGGGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSP 60
             MAE  SGGGGGCCPPMDL RSE MQLVQ+I+P+ESAHLTVSYLG+LGL+QFKDLNSEKSP
Sbjct:     1 MAE--SGGGGGCCPPMDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSP 58

Query:    61 FQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELV 120
             FQRTYAAQIK+C EMARK+RFF++QM KAG+ +        D + DD+EVKLG+LEAELV
Sbjct:    59 FQRTYAAQIKRCGEMARKIRFFRDQMSKAGVPAKEMQGKENDIDLDDVEVKLGELEAELV 118

Query:   121 EINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLT 180
             EINAN DKLQR+++EL+EYKLVLQKAGEFFSSA  SAA QQRE ESQQ GE  +E+PLL 
Sbjct:   119 EINANNDKLQRSYNELMEYKLVLQKAGEFFSSAHRSAADQQRETESQQAGEDLLESPLLQ 178

Query:   181 DKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEK 240
             + E S D +KQ+KLGF+ GLVPREKSM FER+LFRATRGN+F+RQ V++EPV+DP SGEK
Sbjct:   179 E-EKSIDSTKQVKLGFLTGLVPREKSMVFERILFRATRGNIFIRQTVIEEPVIDPNSGEK 237

Query:   241 MEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDA 300
              EKNVFVVFYSGERAK+KILKIC+AFGANRYPF+E+  +QAQ I+EVSGRLSELKTT+DA
Sbjct:   238 AEKNVFVVFYSGERAKSKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDA 297

Query:   301 GLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATK--Q 358
             GL  R  LLQTIGD+FE WNL V+KEK+IYHTLNMLSLDVTKKCLV EGWSPVFA++  Q
Sbjct:   298 GLGQRNILLQTIGDKFELWNLKVRKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFASREIQ 357

Query:   359 DALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVF 418
             DAL+RAA DSNSQVG+IFQVL TKESPPTYFRTNKFTSA QEIVDAYGVAKY+EANPGVF
Sbjct:   358 DALQRAAVDSNSQVGSIFQVLRTKESPPTYFRTNKFTSAIQEIVDAYGVAKYQEANPGVF 417

Query:   419 TIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMAL 478
             TIVTFPFLFAVMFGDWGHGIC+LL T+ LI++EKKLASQKL DI +M FGGRYVILMM+L
Sbjct:   418 TIVTFPFLFAVMFGDWGHGICILLATMYLILKEKKLASQKLGDIMEMAFGGRYVILMMSL 477

Query:   479 FSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRS 538
             FSIYTGLIYNEFFS+PF +F+ SAY CRD+SCSEATT+GLIKVRDTYPFG+DPVWHGSRS
Sbjct:   478 FSIYTGLIYNEFFSIPFPLFAPSAYDCRDVSCSEATTIGLIKVRDTYPFGLDPVWHGSRS 537

Query:   539 ELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLS 598
             ELPFLNSLKMKMSILLGV+QMNLGII+SYFNA FF+  VNIW QFIPQ+IFLNSLFGYLS
Sbjct:   538 ELPFLNSLKMKMSILLGVSQMNLGIIMSYFNARFFKSSVNIWFQFIPQMIFLNSLFGYLS 597

Query:   599 LLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLP 658
             +LII+KW TGSQADLYHVMIYMFLSP DELG+NQLFP QKT QLVLL LA VSVP MLLP
Sbjct:   598 VLIIIKWCTGSQADLYHVMIYMFLSPMDELGENQLFPHQKTLQLVLLFLALVSVPCMLLP 657

Query:   659 KPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXX-QMIHTIEFV 717
             KPFILK QH+ RHQGQ+Y  L  TDESL  +TN                  Q+IHTIEFV
Sbjct:   658 KPFILKKQHEARHQGQAYAPLDETDESLHVETNGGGSHGHEEFEFSEIFVHQLIHTIEFV 717

Query:   718 LGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXXATVGVLL 777
             LGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAW                 ATVGVLL
Sbjct:   718 LGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNPLILIVGVLVFIFATVGVLL 777

Query:   778 VMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE 821
             VMETLSAFLHALRLHWVEFQNKFYEGDGYKF+PF+F    +EDE
Sbjct:   778 VMETLSAFLHALRLHWVEFQNKFYEGDGYKFAPFTFIFTANEDE 821

GO:0005737 "cytoplasm" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009678 "hydrogen-translocating pyrophosphatase activity" evidence=IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IDA

GO:0031669 "cellular response to nutrient levels" evidence=IGI

GO:0032119 "sequestering of zinc ion" evidence=IMP

GO:0043181 "vacuolar sequestering" evidence=IMP

GO:0045735 "nutrient reservoir activity" evidence=IMP

GO:0070072 "vacuolar proton-transporting V-type ATPase complex assembly" evidence=IMP

GO:0071472 "cellular response to salt stress" evidence=IGI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR\|locus:2050085 VHA-A2 "vacuolar proton ATPase A2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2056598 VHA-A1 "vacuolar proton ATPase A1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NLH4 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0032373 Vha100-5 "Vacuolar H[+] ATPase 100kD subunit 5" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291858 vatM "vacuolar proton ATPase 100-kDa subunit" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:103286 Atp6v0a1 "ATPase, H+ transporting, lysosomal V0 subunit A1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PVU4 ATP6V0A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1D6 LOC100523018 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MH43 LOC785923 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJT7	VHAA2_ARATH	No assigned EC number	0.7871	0.9805	0.9805	no	no
Q54E04	VATM_DICDI	No assigned EC number	0.4534	0.9549	0.9619	yes	no
Q29466	VPP1_BOVIN	No assigned EC number	0.4262	0.9451	0.9260	yes	no
P25286	VPP1_RAT	No assigned EC number	0.4255	0.9464	0.9272	yes	no
Q9I8D0	VPP1_CHICK	No assigned EC number	0.4201	0.9390	0.9200	yes	no
A1A5G6	VPP1_XENTR	No assigned EC number	0.4250	0.9439	0.9259	yes	no
Q8W4S4	VHAA3_ARATH	No assigned EC number	0.8059	0.9805	0.9805	yes	no
O13742	VPH1_SCHPO	No assigned EC number	0.3735	0.9549	0.9434	yes	no
P30628	VPP1_CAEEL	No assigned EC number	0.3939	0.9756	0.8850	yes	no
P32563	VPH1_YEAST	No assigned EC number	0.3629	0.9366	0.9154	yes	no
Q9Z1G4	VPP1_MOUSE	No assigned EC number	0.4353	0.9512	0.9308	yes	no
Q9HBG4	VPP4_HUMAN	No assigned EC number	0.4317	0.9585	0.9369	yes	no
Q5R422	VPP1_PONAB	No assigned EC number	0.4251	0.9500	0.9318	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		821
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.0
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	2e-93
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-27
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	2e-23

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

 Score =  637 bits (1646), Expect = 0.0
 Identities = 312/786 (39%), Positives = 434/786 (55%), Gaps = 92/786 (11%)

Query: 40  VSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS---VK 96
           V  LGELGL+Q +DLN + S FQR +  ++++C E+ RKLR  + ++ K GI       K
Sbjct: 1   VDALGELGLVQIRDLNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGK 60

Query: 97  STTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTS 156
                     DLE ++ DLEAE+ E+  N + L++  +EL E+  VL +   F       
Sbjct: 61  PDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFL------ 114

Query: 157 AAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRA 216
                      +  E   E   L         ++ +KLGF+AG++ REK  +FER L+RA
Sbjct: 115 ----------DENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRA 164

Query: 217 TRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEE 276
            RG  ++RQA ++EP+ DP       K VF++F+ G+   +K+ KI D+FG   Y   E 
Sbjct: 165 CRG--YIRQAEIEEPLEDPK------KTVFIIFFVGKEDLDKVKKILDSFGFELYDVPET 216

Query: 277 FDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNML 336
             ++++ IS+V+ R+ EL+  L+    H   +L  I D+   W+  V KEK++Y TLN+ 
Sbjct: 217 EGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSKEKAVYETLNLF 276

Query: 337 SLDVTKKCLVGEGWSPV--FATKQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKF 394
           +     K L+ EGW P       + ALE A   S S V +I   + T E PPTY + NKF
Sbjct: 277 N--YDTKTLIAEGWVPAKDLEKLKAALENATEGSGS-VPSIENDIETNEEPPTYLKNNKF 333

Query: 395 TSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKL 454
           T+ FQ IVDAYG+ KYRE +P  FTI+TFPF F +MFGD G+G+ + L  L+L++ EKKL
Sbjct: 334 TAPFQMIVDAYGIPKYREIDPTPFTIITFPFFFGMMFGDAGYGLLMFLIALLLVLLEKKL 393

Query: 455 ASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEAT 514
                       F GRY++L+M +FSIYTG IYN+ F     IF  S +    +  S  T
Sbjct: 394 G--------KKKFKGRYILLLMGVFSIYTGFIYNDCFGKSLNIFG-SGWLWPVMIKSGET 444

Query: 515 TVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFR 574
                     YPFG+DP W+G  ++L FLNS KMK+SI+LGV  M  G+ L +FN   F+
Sbjct: 445 LTLAPHE-GPYPFGIDPEWNGVENKLLFLNSYKMKLSIILGVIHMTFGLFLGFFNHVKFK 503

Query: 575 IGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHV------MIYMFLSPTDEL 628
             ++I   FIPQ+ +L  +FGYL +LII KW+                +I MFL P    
Sbjct: 504 SKIDIKDAFIPQLSWLIIIFGYLVILIIYKWLVDWAKTSKPAPSLLIGLINMFLFP---- 559

Query: 629 GDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQP 688
                       Q+ L++LA V VP +LL KP  L  + +                    
Sbjct: 560 ----------GVQVFLVVLALVCVPILLLLKPLFLMREGKKG------------------ 591

Query: 689 DTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKV 748
                     EFEF EV +HQ+IHTIEF LG VS+TASYLRLWALSLAH++LS+V    V
Sbjct: 592 ----------EFEFGEVMIHQVIHTIEFCLGCVSHTASYLRLWALSLAHAQLSAVLNTMV 641

Query: 749 LLLAWGYNN-ILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYK 807
           +L+ +     I +++V IIVF+     + L+ME LSAFLHALRLH+VEF +KFYEG G K
Sbjct: 642 ILIGFESIGVIALVVVFIIVFVL-GHAINLIMEGLSAFLHALRLHYVEFFSKFYEGGGRK 700

Query: 808 FSPFSF 813
           F PFSF
Sbjct: 701 FEPFSF 706

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		821
KOG2189		829	consensus Vacuolar H+-ATPase V0 sector, subunit a	100.0
PF01496		759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	100.0
PRK05771		646	V-type ATP synthase subunit I; Validated	100.0
COG1269		660	NtpI Archaeal/vacuolar-type H+-ATPase subunit I [E	100.0
PF14257		262	DUF4349: Domain of unknown function (DUF4349)	92.04
PRK05771		646	V-type ATP synthase subunit I; Validated	86.59

>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=5.3e-181  Score=1509.35  Aligned_cols=793  Identities=53%  Similarity=0.885  Sum_probs=699.5

Q ss_pred             CCCccccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003422           15 PMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS   94 (821)
Q Consensus        15 ~~s~fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~   94 (821)
                      |+||||||+|+++|+++|.|.|++||++||++|+|||+|||+++++|||.|++++|||||||||+||++++++|.+++.+
T Consensus         1 ~~s~fRSE~M~L~Ql~l~~eaAy~~vaeLGelGlvqFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~   80 (829)
T KOG2189|consen    1 MGSLFRSEEMCLVQLFLQSEAAYQCVAELGELGLVQFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLP   80 (829)
T ss_pred             CccccccccceeeEEEecHHHHHHHHHHhhccCeeEeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999887764


Q ss_pred             ---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhccCC
Q 003422           95 ---VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGE  171 (821)
Q Consensus        95 ---~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~~~~~~  171 (821)
                         +.++.|...+++++|++++++|+|+++++++.++|+++.+++.|++++|+++.+||+.......+  .+..  ..  
T Consensus        81 ~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~--~~~~--~~--  154 (829)
T KOG2189|consen   81 DLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFE--DDET--AD--  154 (829)
T ss_pred             CccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhc--chhh--hh--
Confidence               45567788999999999999999999999999999999999999999999999999852211000  0000  00  


Q ss_pred             CCcCCCCccccccCCCCCCcceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEe
Q 003422          172 MTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYS  251 (821)
Q Consensus       172 ~~~~~pLl~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~vi~~~  251 (821)
                       ....++... +  ..+....++++++|+|++++...|+|.|||+||||+|++..++++++.||.+|+.++|+||+|+++
T Consensus       155 -~~~~~~~~~-~--~~~~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~  230 (829)
T KOG2189|consen  155 -LGEGPLESA-E--KGPFDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQ  230 (829)
T ss_pred             -hcccccchh-c--cCCCCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEee
Confidence             000111111 0  012234589999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422          252 GERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYH  331 (821)
Q Consensus       252 ~~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~  331 (821)
                      |+....||+|||++|+++.|++|+++..+++.+.+++.+++|++..+.++++.+.+.+....+.+..|...++|+|++|+
T Consensus       231 Geql~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyh  310 (829)
T KOG2189|consen  231 GEQLKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIYH  310 (829)
T ss_pred             cHHHHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccccccCcEEEEEEEeeccchh--HHHHHhHhhcCCCceEEEEEecCCCCCCCcccccCccchhHHHHHHhhcCCC
Q 003422          332 TLNMLSLDVTKKCLVGEGWSPVFATK--QDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAK  409 (821)
Q Consensus       332 ~l~~~~~~~t~~~~~~~GWvP~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~pFe~lv~~Yg~P~  409 (821)
                      +||++++|.|+++++.|||||..+.+  +++|++.+.++|.+++.+++.++.++.||||+|+|||+++||.|||.||+++
T Consensus       311 tLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa~  390 (829)
T KOG2189|consen  311 TLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVAS  390 (829)
T ss_pred             HHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhccccc
Confidence            99999999999999999999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhcccc-ccchhhhchhhHHHHHHHHHHHHHHHHHhc
Q 003422          410 YREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQK-LDDITDMTFGGRYVILMMALFSIYTGLIYN  488 (821)
Q Consensus       410 Y~EiDPt~~~~i~fp~fFG~MfgD~GyGlll~l~~~~l~~~~~~~~~~~-~~~~~~~~~~~r~il~~~gi~si~~G~lyg  488 (821)
                      |+|+||+|++.|||||+|++||||+|||++|+++|+|+++++||+..++ .+++++|+|.||||+++||++|||+|++||
T Consensus       391 YrEvNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliYN  470 (829)
T KOG2189|consen  391 YREVNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIYN  470 (829)
T ss_pred             ccccCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999988765 459999999999999999999999999999


Q ss_pred             cccccccccccccccccccCCC----Ccccc---cccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHH
Q 003422          489 EFFSVPFEIFSHSAYACRDLSC----SEATT---VGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNL  561 (821)
Q Consensus       489 ~fFG~~~~~fg~s~~~~~~~~~----~~~~~---~g~~~~~~~~~fg~dp~~~~~~~~l~f~n~~~m~~si~iGv~~~~~  561 (821)
                      |+|+.++++|| |+|.++....    .+...   .+..+.+.|||||+||+|+.+.|+|.|+||+|||+||++|++||++
T Consensus       471 D~FSks~niFg-S~W~~~~~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~f  549 (829)
T KOG2189|consen  471 DFFSKSMNIFG-SSWSNPYNVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMTF  549 (829)
T ss_pred             hhccccccccc-CcccCccccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999996 9998874432    11111   1111234589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHhhcCCCCCCCCCccCC
Q 003422          562 GIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWIT------GSQADLYHVMIYMFLSPTDELGDNQLFP  635 (821)
Q Consensus       562 g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~w~~------~~~p~l~~~~i~~~l~~~~~~~~~~~~~  635 (821)
                      |++++..|++++|++.|++++++||++|+.|+||||+++|+|||+.      .++||+++++|||||.|+.. .+..+||
T Consensus       550 Gv~lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~-~~~~lyp  628 (829)
T KOG2189|consen  550 GVILSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTD-AGFQLYP  628 (829)
T ss_pred             HHHHHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCC-CccccCC
Confidence            9999999999999999999999999999999999999999999995      35899999999999999862 2238999


Q ss_pred             chhhHHHHHHHHHHHhhhhhccchhhhhhhccccc----ccccccccccccccCCC--C---CCCC--CCCCCccchhHH
Q 003422          636 GQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDR----HQGQSYEALQSTDESLQ--P---DTNH--DSHGHEEFEFSE  704 (821)
Q Consensus       636 g~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~~~~~----~~g~~~~~~~~~~~~~~--~---~~~~--~~~~~~~~~~~e  704 (821)
                      ||..+|.++++++++||||||++||++++++|+++    ++++.+.....+++...  .   ++.+  +.++++++++||
T Consensus       629 ~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fse  708 (829)
T KOG2189|consen  629 GQKQVQLILLVLALVCVPWMLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFSE  708 (829)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchhh
Confidence            99999999999999999999999999998877654    11222221111111100  0   0111  113455789999


Q ss_pred             HHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHHHHHHHHHHhh
Q 003422          705 VFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNN---ILILIVGIIVFIFATVGVLLVMET  781 (821)
Q Consensus       705 ~~i~~~i~~ie~vl~~~sntlSYlRL~Al~LAh~~La~v~~~~~~~~~~~~~~---~~~~i~~~~v~~~~~~~i~~~me~  781 (821)
                      ++|||+|||||+||||+|||+||+||||||||||||++|+|+|++.++++.++   .+++++.+.+|+++|++|+++|||
T Consensus       709 I~iHQaIHTIEf~LgcVShTASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~MEG  788 (829)
T KOG2189|consen  709 IFIHQAIHTIEFVLGCVSHTASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLMEG  788 (829)
T ss_pred             HHhhhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999988876433   222334444667779999999999


Q ss_pred             hHhHHhhhhhhheeecccccccCCeecccccccccCCc
Q 003422          782 LSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDE  819 (821)
Q Consensus       782 L~~fvH~LRL~~vEFf~KFy~G~G~~F~Pf~~~~~~~~  819 (821)
                      ||||+||||||||||+||||+|+|++|.||+++.++++
T Consensus       789 LSAfLHaLRLHWVEFqsKFy~G~Gy~F~PFsF~~~~~~  826 (829)
T KOG2189|consen  789 LSAFLHALRLHWVEFQSKFYEGTGYKFEPFSFKLILDE  826 (829)
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCCCcccccceeehhhhh
Confidence            99999999999999999999999999999999998874

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PRK05771 V-type ATP synthase subunit I; Validated	Back alignment and domain information

>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>PF14257 DUF4349: Domain of unknown function (DUF4349)	Back alignment and domain information

>PRK05771 V-type ATP synthase subunit I; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		821
2nvj_A		25	Nmr Structures Of Transmembrane Segment From Subuni		4e-04

>pdb|2NVJ|A Chain A, Nmr Structures Of Transmembrane Segment From Subunit A From The Yeast Proton V-Atpase Length = 25

Back alignment and structure

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 715 EFVLGAVSNTASYLRLWALSLAHSE 739
           EF L  VS+TASYLRLWALSLAH++
Sbjct: 1   EFCLNCVSHTASYLRLWALSLAHAQ 25

PyMOL of 2nvj

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		821
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	5e-67
2nvj_A		26	25MER peptide from vacuolar ATP synthase subunit A	9e-09
2jtw_A		26	Transmembrane helix 7 of yeast vATPase; peptide, m	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Length = 357	Back alignment and structure

 Score =  226 bits (576), Expect = 5e-67
 Identities = 48/408 (11%), Positives = 104/408 (25%), Gaps = 59/408 (14%)

Query: 11  GCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIK 70
           G      +   + M+ + +  P   A   ++ L + G++    L  ++    R    +  
Sbjct: 1   GSAGSGTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEA 60

Query: 71  KCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQ 130
           +       +   ++ +   G+ +   S      + ++ E  L  + +    +      L+
Sbjct: 61  ELKRWEAVVSQAEQSLTVVGLATVPSSK-PFTGSLEEAEAVLRPVASRAEVLGKERAALE 119

Query: 131 RAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSK 190
                +  +    +K                                            +
Sbjct: 120 EEIQTIELFGKAAEKLAALAH-----------------------------------GLDE 144

Query: 191 QIKLGFIAGLV-PREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVF 249
             +LG I  LV   E+  +  + L  A      L               E +E  +  + 
Sbjct: 145 SPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA-------------EPLENQLAALV 191

Query: 250 YSGERAKNKILKICDAFGANRYPFNEEFD--KQAQAISEVSGRLSELKTTLDAGLLHRGN 307
                            G     F   +      +A + +  R       L         
Sbjct: 192 VVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVAR 251

Query: 308 LLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQDALERAAFD 367
           L +  G+         K E + Y  +  ++    K      GW P  A  +  +E A   
Sbjct: 252 LSRESGEALIALWTRAKDEVARYKAVADMA--AGKYGAALMGWVPQKAKGK--VEEALGR 307

Query: 368 SNSQVGAIFQVL---HTKESPPTYFRTNKFTSAFQEIVDAYGVAKYRE 412
              Q+   F+ +   H     P       +   F+ +        Y  
Sbjct: 308 LRDQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGS 355

PyMOL of 3rrk

>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic} Length = 26	Back alignment and structure

>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X Length = 26	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		821
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	100.0
2nvj_A		26	25MER peptide from vacuolar ATP synthase subunit A	99.0
2jtw_A		26	Transmembrane helix 7 of yeast vATPase; peptide, m	98.75

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}	Back alignment and structure

Probab=100.00  E-value=3.7e-45  Score=406.17  Aligned_cols=340  Identities=14%  Similarity=0.134  Sum_probs=243.1

Q ss_pred             CCccccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhh--hhhH-HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003422           16 MDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQ--RTYA-AQIKKCAEMARKLRFFKEQMLKAGIL   92 (821)
Q Consensus        16 ~s~fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~--r~~~-~~v~rceE~e~kl~fl~~~l~k~~i~   92 (821)
                      +-|+||++|++++|++|++.+++++++||++|+|||+|++++.+.++  +++. +++++|+++.++++++.+++.+...+
T Consensus         6 ~~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~~~   85 (357)
T 3rrk_A            6 GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVP   85 (357)
T ss_dssp             --------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CCCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhcccccc
Confidence            35899999999999999999999999999999999999998777776  5654 68999999999999999999876422


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHhhhhhhccCC
Q 003422           93 SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFF-SSALTSAAAQQREMESQQTGE  171 (821)
Q Consensus        93 ~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l-~~~~~~~~~~~~~~~~~~~~~  171 (821)
                      .    .++...+++++++.++++++++.++.+++++|+++++++++.+.+++....|- +                   +
T Consensus        86 ~----~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~-------------------l  142 (357)
T 3rrk_A           86 S----SKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHG-------------------L  142 (357)
T ss_dssp             C----SSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------------------T
T ss_pred             c----ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc-------------------C
Confidence            1    01223458999999999999999999999999999999999977777666652 2                   0


Q ss_pred             CCcCCCCccccccCCCCCCcceEEEEEEEE-cCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEE
Q 003422          172 MTIETPLLTDKEMSADPSKQIKLGFIAGLV-PREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFY  250 (821)
Q Consensus       172 ~~~~~pLl~~~e~~~~~~~~~~~~~~~G~I-~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~vi~~  250 (821)
                         +   .           ..++.+++|+| |+++.++|++.+++++++..+...            ++...+.+ ++++
T Consensus       143 ---d---~-----------~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~-~vv~  192 (357)
T 3rrk_A          143 ---D---E-----------SPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA------------EPLENQLA-ALVV  192 (357)
T ss_dssp             ---T---T-----------CTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEE------------EECSSSEE-EEEE
T ss_pred             ---C---c-----------cceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEe------------ecCCCcEE-EEEE
Confidence               1   1           34689999999 788999999999999888432211            11122344 4444


Q ss_pred             eChhhHHHHHHhhhccCcEEeeCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422          251 SGERAKNKILKICDAFGANRYPFNEEFD--KQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKS  328 (821)
Q Consensus       251 ~~~~~~~~v~~i~~~~~~~~~~~p~~~~--~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~  328 (821)
                      ++++..++++++|+++||+++++|+..+  +|.+.++++++++++++++++++++++++..+.+...+..|...+.++++
T Consensus       193 ~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~  272 (357)
T 3rrk_A          193 VKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVA  272 (357)
T ss_dssp             EEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999998777  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccccCcEEEEEEEeeccchh--HHHHHhHhhcCCCceEEEEEecCCC---CCCCcccccCccchhHHHHHH
Q 003422          329 IYHTLNMLSLDVTKKCLVGEGWSPVFATK--QDALERAAFDSNSQVGAIFQVLHTK---ESPPTYFRTNKFTSAFQEIVD  403 (821)
Q Consensus       329 i~~~l~~~~~~~t~~~~~~~GWvP~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~---~~pPt~l~n~~~~~pFe~lv~  403 (821)
                      +|++++  .++.|+++++++||||+++++  +++|++    .+..+.+.+.+++++   +.|||+++||+|++|||.||+
T Consensus       273 ~~~~~~--~~~~~~~~~~~~gWvp~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~  346 (357)
T 3rrk_A          273 RYKAVA--DMAAGKYGAALMGWVPQKAKGKVEEALGR----LRDQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHG  346 (357)
T ss_dssp             HHHHHH--HHHTTCCSEEEEEEECTTTHHHHHHTCCS----SCEEEEC--------------------------------
T ss_pred             HHHHHH--hhcccCcEEEEEEEeeHHHHHHHHHHHHh----cCCceEEEEecCCccccCCCcCEeccCCchhhHHHHHHH
Confidence            999999  567889999999999999999  555554    234566667777666   689999999999999999999


Q ss_pred             hhcCCCCCccC
Q 003422          404 AYGVAKYREAN  414 (821)
Q Consensus       404 ~Yg~P~Y~EiD  414 (821)
                      |||+|+|+|+|
T Consensus       347 ~Yg~p~Y~EiD  357 (357)
T 3rrk_A          347 FLNTPAYGSHD  357 (357)
T ss_dssp             -----------
T ss_pred             hcCCCCCCCCC
Confidence            99999999998

PyMOL of 3rrk

>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00