Citrus Sinensis ID: 003439
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | 2.2.26 [Sep-21-2011] | |||||||
| O81767 | 823 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.985 | 0.624 | 0.0 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.931 | 0.944 | 0.390 | 1e-165 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.897 | 0.845 | 0.408 | 1e-164 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.936 | 0.862 | 0.381 | 1e-163 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.931 | 0.964 | 0.371 | 1e-159 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.962 | 0.928 | 0.373 | 1e-155 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.936 | 0.721 | 0.370 | 1e-155 | |
| Q9M9E2 | 866 | Pentatricopeptide repeat- | no | no | 0.928 | 0.878 | 0.374 | 1e-154 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.914 | 0.864 | 0.378 | 1e-154 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.932 | 0.908 | 0.369 | 1e-154 |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/821 (62%), Positives = 639/821 (77%), Gaps = 10/821 (1%)
Query: 3 RLAPSCKDRRLCKLLPLLQAHRPLFSAAANSLQISPDCLEN--ESREID-FDDLFQSCTK 59
R P+CK R ++L + + FSA+AN+LQ DC +N ES+EID LF+ CT
Sbjct: 10 RQIPTCKGGRFTRVLQSIGSVIREFSASANALQ---DCWKNGNESKEIDDVHTLFRYCTN 66
Query: 60 LHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISV 119
L K LHA LVVS +I+ V S KLVN Y LG+++ +RHTFDHI R+VY WN MIS
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 120 YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVF 179
Y R G SE + CF F L+SGL PD+ TFP VLKACR ++DG KIHC LK GF WDV+
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVY 186
Query: 180 VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 239
VAASL+H+Y R+ AR LFD+MPVRD GSWNAMISGYCQSGNA EAL + + +R
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR--- 243
Query: 240 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 299
+MD +TV S+L C + + G+ IH Y +KHGLE LFVSN LI++YA+FG +R
Sbjct: 244 -AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQ 302
Query: 300 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359
+VFD+M RD++SWNSII AYE + P+ A F M+ + IQPD LTL+SL SI++QL
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Query: 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 419
D R RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++SA AVF LP DVISWNT+I
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422
Query: 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 479
+GYAQNG ASEAIE++ +MEE EI NQGT+VS+LPA S GALRQG+K+H R++KN L
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482
Query: 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 539
DVFV T L DMYGKCGR++DA+SLFYQ+PR +SVPWN +I+CHG HG G+KA+ F++
Sbjct: 483 YLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 540 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 599
MLDEGV+PDHITFV+LL+ACSHSGLV EGQ F MMQ ++GI P LKHYGCMVD++GRAG
Sbjct: 543 MLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAG 602
Query: 600 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659
L A FI++M ++PDASIWGALL ACR+HGN++LG +AS+ LFEV+ E+VGY+VL+SN
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSN 662
Query: 660 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 719
+YA+ GKWEGVDE+RS+A +GL+KTPGWSS+EV+NKV++FYTGN+THP YE++Y EL
Sbjct: 663 MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTA 722
Query: 720 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 779
L AK+K +GYVPD FVLQDVE+DEKEHIL SHSERLAIAF +I++P K+ I+IFKNLRV
Sbjct: 723 LQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRV 782
Query: 780 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
CGDCH+ TKFIS+ITEREIIVRDSNRFHHFK+G+CSCGDYW
Sbjct: 783 CGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 301/771 (39%), Positives = 460/771 (59%), Gaps = 7/771 (0%)
Query: 53 LFQSCTKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYT 112
L + C+ L ++++ L+ +G + F TKLV+ + G + + F+ I +
Sbjct: 43 LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102
Query: 113 WNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSV 169
+++M+ + + L +A+ F + + P Y F +LK C + + GK+IH +
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDD-VEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 170 LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 229
+K GF D+F L +MY + N ARK+FD MP RD SWN +++GY Q+G A AL
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221
Query: 230 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 289
+++ M E + IT+ S+LP + I G IH Y ++ G + + +S L++MY
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMY 281
Query: 290 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 349
AK G + A ++FD M+ER+VVSWNS+I AY Q+ +P A F M G++P ++++
Sbjct: 282 AKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVM 341
Query: 350 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 409
A L D R +H + G +V + N+++ MY K +++A ++F L
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELG-LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400
Query: 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 469
+ ++SWN +I G+AQNG +A+ F M + P+ TYVS++ A + +
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRS-RTVKPDTFTYVSVITAIAELSITHHAKW 459
Query: 470 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 529
IH V+++CL +VFV T LVDMY KCG I A +F + WNA+I +G HG
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 530 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 589
G AL F +M ++P+ +TF+S+++ACSHSGLV G + F+MM+E + I+ + HYG
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579
Query: 590 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649
MVDL GRAG L A +FI MPV+P +++GA+LGAC+IH N+ A++RLFE++ +
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639
Query: 650 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPK 709
+ GY+VL++NIY WE V +VR +GL+KTPG S +E+ N+V F++G+ HP
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPD 699
Query: 710 YEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKS 769
+KIY L L +K GYVPD + VL VE D KE +L++HSE+LAI+FG++++ +
Sbjct: 700 SKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGT 758
Query: 770 PIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
I + KNLRVC DCHN TK+IS +T REI+VRD RFHHFK+G CSCGDYW
Sbjct: 759 TIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 303/741 (40%), Positives = 441/741 (59%), Gaps = 5/741 (0%)
Query: 83 TKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGL 142
+KL Y N GDL + FD + WN +++ + G S ++ F + ++SG+
Sbjct: 133 SKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGV 191
Query: 143 RPDFYTFPPVLKA---CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 199
D YTF V K+ R++ G+++H +LK GF V SL+ Y + + ARK
Sbjct: 192 EMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARK 251
Query: 200 LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 259
+FD+M RD SWN++I+GY +G A + L + +M + G+ +D T+ S+ CA S
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 311
Query: 260 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 319
I G +H VK N L++MY+K G + A VF +M +R VVS+ S+IA
Sbjct: 312 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371
Query: 320 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 379
Y + A F M++ GI PD+ T+ ++ + A+ + VH +I
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF- 430
Query: 380 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 439
D+ + NA++DMYAK G + A VF + VKD+ISWNT+I GY++N A+EA+ +F ++
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 440 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 499
E +P++ T +LPA + + A +G +IH +++N D VA LVDMY KCG +
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550
Query: 500 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559
A LF + V W +I+ +G+HG G +A+ F QM G+ D I+FVSLL AC
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610
Query: 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 619
SHSGLV EG R+F++M+ E I+P ++HY C+VD+ R G L A+ FI+NMP+ PDA+I
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 670
Query: 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679
WGALL CRIH +++L ++++FE++ EN GYYVLM+NIYA KWE V +R
Sbjct: 671 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 730
Query: 680 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 739
RGL+K PG S IE+ +V+IF G+ ++P+ E I LR + A+M GY P + L D
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALID 790
Query: 740 VEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREII 799
EE EKE L HSE+LA+A GIISS I++ KNLRVCGDCH KF+S++T REI+
Sbjct: 791 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 850
Query: 800 VRDSNRFHHFKDGICSCGDYW 820
+RDSNRFH FKDG CSC +W
Sbjct: 851 LRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 575 bits (1481), Expect = e-163, Method: Compositional matrix adjust.
Identities = 303/794 (38%), Positives = 468/794 (58%), Gaps = 26/794 (3%)
Query: 50 FDDLFQSCTKLHHV---KRLHALLVVSG-KIKTVFSSTKLVNFYANLGDLSFSRHTFDHI 105
F L ++ L + K++HA + G + +V + LVN Y GD FD I
Sbjct: 100 FPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI 159
Query: 106 SYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL------ 159
S RN +WNS+IS + A++ F + L + P +T V+ AC NL
Sbjct: 160 SERNQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTLVSVVTACSNLPMPEGL 218
Query: 160 VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 219
+ GK++H L+ G E + F+ +L+ MY + G ++ L RD +WN ++S
Sbjct: 219 MMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 220 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG-LEFN 278
CQ+ +EAL+ L EM LEGV D T++S+LP C+ + + +G +H Y +K+G L+ N
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337
Query: 279 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 338
FV + L++MY + RVFD M +R + WN++IA Y Q+ A F M++
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 397
Query: 339 -AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 397
AG+ + T+ + + ++HGF+++RG D + N ++DMY++LG I
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRG-LDRDRFVQNTLMDMYSRLGKI 456
Query: 398 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE----------INPN 447
+ A +F + +D+++WNT+ITGY + +A+ + M+ + PN
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 516
Query: 448 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 507
T ++ILP+ + + AL +G +IHA IKN L DV V + LVDMY KCG + + +F
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576
Query: 508 QVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 567
Q+P+ + + WN II +G+HG G +A++ R M+ +GV+P+ +TF+S+ ACSHSG+V E
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636
Query: 568 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR-PDASIWGALLGA 626
G R F++M+ ++G++P HY C+VDL GRAG + A+ + MP A W +LLGA
Sbjct: 637 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696
Query: 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTP 686
RIH N+E+G +A+ L +++ +YVL++NIY++ G W+ EVR +++G++K P
Sbjct: 697 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756
Query: 687 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKE 746
G S IE ++V F G+ +HP+ EK+ L L +M+ GYVPD S VL +VEEDEKE
Sbjct: 757 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 816
Query: 747 HILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRF 806
+L HSE+LAIAFGI+++ P + I++ KNLRVC DCH TKFIS+I +REII+RD RF
Sbjct: 817 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRF 876
Query: 807 HHFKDGICSCGDYW 820
H FK+G CSCGDYW
Sbjct: 877 HRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust.
Identities = 287/773 (37%), Positives = 455/773 (58%), Gaps = 9/773 (1%)
Query: 52 DLFQSCTKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVY 111
D F+ T + H+ + HA +++ G + TKL ++LG + ++R F + +V+
Sbjct: 25 DFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVF 84
Query: 112 TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCS 168
+N ++ + ++ F ++ L+P+ T+ + A D G+ IH
Sbjct: 85 LFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQ 144
Query: 169 VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 228
+ G + ++ + ++++ MY +F ARK+FD MP +D+ WN MISGY ++ VE+
Sbjct: 145 AVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVES 204
Query: 229 LDILDEMRLEGVS-MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 287
+ + ++ E + +D T+ ILP A + G+ IH K G + +V I+
Sbjct: 205 IQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFIS 264
Query: 288 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 347
+Y+K G ++ +F + + D+V++N++I Y + + + F + +G + T
Sbjct: 265 LYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST 324
Query: 348 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 407
LVSL + L ++HG+ ++ F+ + A+ +Y+KL I SA +F+
Sbjct: 325 LVSLVPVSGHLMLIY---AIHGYCLKSN-FLSHASVSTALTTVYSKLNEIESARKLFDES 380
Query: 408 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 467
P K + SWN +I+GY QNGL +AI +F+ M++ +E +PN T IL A + +GAL G
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQK-SEFSPNPVTITCILSACAQLGALSLG 439
Query: 468 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 527
+H V ++V+T L+ MY KCG I +A LF + + + V WN +IS +G+H
Sbjct: 440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLH 499
Query: 528 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 587
GQG +ALN F +ML+ G+ P +TF+ +L ACSH+GLV EG F+ M +G +P +KH
Sbjct: 500 GQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKH 559
Query: 588 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 647
Y CMVD+ GRAGHL A FI+ M + P +S+W LLGACRIH + L S++LFE+D
Sbjct: 560 YACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELD 619
Query: 648 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 707
+NVGY+VL+SNI++ + VR A+ R L K PG++ IE+ +F +G+++H
Sbjct: 620 PDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSH 679
Query: 708 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPP 767
P+ ++IY++L L KM+ GY P+ L DVEE+E+E ++ HSERLAIAFG+I++ P
Sbjct: 680 PQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEP 739
Query: 768 KSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
+ I+I KNLRVC DCH TK IS+ITER I+VRD+NRFHHFKDG+CSCGDYW
Sbjct: 740 GTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 549 bits (1414), Expect = e-155, Method: Compositional matrix adjust.
Identities = 316/846 (37%), Positives = 473/846 (55%), Gaps = 57/846 (6%)
Query: 28 SAAANSLQISPDCLENESREIDFDDLFQSCTKLHHVKRLHALLVVSGKIKTVFSSTKLVN 87
+AAA S Q L + S C + VK +H L+ G I T+ ++ L++
Sbjct: 9 NAAAKSHQYIKVSLFSTSAPEITPPFIHKCKTISQVKLIHQKLLSFG-ILTLNLTSHLIS 67
Query: 88 FYANLGDLSFSRHTFDHI--SYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLR-- 143
Y ++G LS + S VY WNS+I Y G A C Y F L L
Sbjct: 68 TYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSY---GDNGCANKCLYLFGLMHSLSWT 124
Query: 144 PDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 200
PD YTFP V KAC + G+ H L GF +VFV +L+ MY R + ARK+
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184
Query: 201 FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE-GVSMDPITVASILPVCARSDN 259
FD+M V D SWN++I Y + G AL++ M E G D IT+ ++LP CA
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244
Query: 260 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 319
G +H + V + N+FV N L++MYAK GMM A VF M +DVVSWN+++A
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304
Query: 320 YEQSNDPITAHGFFTTMQQ-----------------------------------AGIQPD 344
Y Q A F MQ+ +GI+P+
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364
Query: 345 LLTLVSLTSIVAQLNDCRNSRSVHGFI------MRRGWFMEDVIIGNAVVDMYAKLGIIN 398
+TL+S+ S A + + + +H + +R+ ++ ++ N ++DMYAK ++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424
Query: 399 SACAVFEGLPVK--DVISWNTLITGYAQNGLASEAIEVF-QMMEECNEINPNQGTYVSIL 455
+A A+F+ L K DV++W +I GY+Q+G A++A+E+ +M EE + PN T L
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484
Query: 456 PAYSHVGALRQGIKIHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 514
A + + ALR G +IHA ++N +FV+ CL+DMY KCG I DA +F + +
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544
Query: 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHM 574
V W ++++ +G+HG G++AL F +M G + D +T + +L ACSHSG++ +G YF+
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604
Query: 575 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNME 634
M+ FG+ P +HY C+VDL GRAG L A I+ MP+ P +W A L CRIHG +E
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664
Query: 635 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVN 694
LG A++++ E+ S + G Y L+SN+YAN G+W+ V +RSL R +G+KK PG S +E
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGI 724
Query: 695 NKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 754
F+ G++THP ++IY L + ++K +GYVP+ F L DV+++EK+ +L HSE
Sbjct: 725 KGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSE 784
Query: 755 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGIC 814
+LA+A+GI+++P + I+I KNLRVCGDCH ++S+I + +II+RDS+RFHHFK+G C
Sbjct: 785 KLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSC 844
Query: 815 SCGDYW 820
SC YW
Sbjct: 845 SCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 549 bits (1414), Expect = e-155, Method: Compositional matrix adjust.
Identities = 288/777 (37%), Positives = 438/777 (56%), Gaps = 9/777 (1%)
Query: 50 FDDLFQSCTKLHHVK---RLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHIS 106
F + +C K+ ++ +LH L++ G + LV+ Y +LG+L + H F ++S
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350
Query: 107 YRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGK 163
R+ T+N++I+ +CG +A++ F + L GL PD T ++ AC L G+
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHL-DGLEPDSNTLASLVVACSADGTLFRGQ 409
Query: 164 KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 223
++H KLGF + + +LL++Y + A F + V + WN M+ Y
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469
Query: 224 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 283
+ + I +M++E + + T SIL C R ++ G IH I+K + N +V +
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529
Query: 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 343
LI+MYAK G + A + + +DVVSW ++IA Y Q N A F M GI+
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 344 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 403
D + L + S A L + + +H G F D+ NA+V +Y++ G I +
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSG-FSSDLPFQNALVTLYSRCGKIEESYLA 648
Query: 404 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463
FE D I+WN L++G+ Q+G EA+ VF M I+ N T+ S + A S
Sbjct: 649 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASETAN 707
Query: 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 523
++QG ++HA + K + V L+ MY KCG I DA F +V + V WNAII+
Sbjct: 708 MKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINA 767
Query: 524 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 583
+ HG G +AL+ F QM+ VRP+H+T V +L+ACSH GLV +G YF M E+G+ P
Sbjct: 768 YSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP 827
Query: 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 643
+HY C+VD+ RAG L A FIQ MP++PDA +W LL AC +H NME+G A+ L
Sbjct: 828 KPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHL 887
Query: 644 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 703
E++ E+ YVL+SN+YA KW+ D R +++G+KK PG S IEV N + FY G
Sbjct: 888 LELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVG 947
Query: 704 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 763
++ HP ++I++ ++LT + +GYV D +L +++ ++K+ I+ HSE+LAI+FG++
Sbjct: 948 DQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLL 1007
Query: 764 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
S P PI + KNLRVC DCH W KF+S+++ REIIVRD+ RFHHF+ G CSC DYW
Sbjct: 1008 SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/780 (37%), Positives = 447/780 (57%), Gaps = 19/780 (2%)
Query: 51 DDLFQSCTKLHHVKR-------LHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFD 103
+D+F + +L KR ++++ + S V + + G+L + + F
Sbjct: 94 EDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFG 153
Query: 104 HISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-- 161
+S RN+++WN ++ Y + G EA+ +++ G++PD YTFP VL+ C + D
Sbjct: 154 KMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLA 213
Query: 162 -GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYC 220
GK++H V++ G+E D+ V +L+ MY + G AR LFD MP RD SWNAMISGY
Sbjct: 214 RGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYF 273
Query: 221 QSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 278
++G E L++ MR G+S+DP +T+ S++ C + G IH Y++ G +
Sbjct: 274 ENGMCHEGLELFFAMR--GLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVD 331
Query: 279 LFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 338
+ V N+L MY G R A ++F +M +D+VSW ++I+ YE + P A + M Q
Sbjct: 332 ISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQ 391
Query: 339 AGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIIN 398
++PD +T+ ++ S A L D +H ++ + VI+ N +++MY+K I+
Sbjct: 392 DSVKPDEITVAAVLSACATLGDLDTGVELHKLAIK-ARLISYVIVANNLINMYSKCKCID 450
Query: 399 SACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 458
A +F +P K+VISW ++I G N EA+ + M+ + PN T + L A
Sbjct: 451 KALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKM--TLQPNAITLTAALAAC 508
Query: 459 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWN 518
+ +GAL G +IHA V++ + D F+ L+DMY +CGR++ A S F + WN
Sbjct: 509 ARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF-NSQKKDVTSWN 567
Query: 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578
+++ + GQG + F +M+ VRPD ITF+SLL CS S +V +G YF M E+
Sbjct: 568 ILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-ED 626
Query: 579 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 638
+G+ P+LKHY C+VDL GRAG L AH FIQ MPV PD ++WGALL ACRIH ++LG +
Sbjct: 627 YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGEL 686
Query: 639 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVD 698
++ +FE+D ++VGYY+L+ N+YA+ GKW V +VR + ++ GL G S +EV KV
Sbjct: 687 SAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVH 746
Query: 699 IFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAI 758
F + ++ HP+ ++I L KM +G D E ++ I HSER AI
Sbjct: 747 AFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAI 806
Query: 759 AFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 818
AFG+I++ P PI + KNL +C +CH+ KFIS+ REI VRD+ FHHFKDG CSCGD
Sbjct: 807 AFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/763 (37%), Positives = 445/763 (58%), Gaps = 13/763 (1%)
Query: 64 KRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRC 123
++LH + G + V T LV+ Y + R FD + RNV TW ++IS Y R
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172
Query: 124 GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA-CRNLVDGK--KIHCSVLKLGFEWDVFV 180
E + F + G +P+ +TF L V G+ ++H V+K G + + V
Sbjct: 173 SMNDEVLTLFMRMQ-NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231
Query: 181 AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 240
+ SL+++Y + G AR LFD V+ +WN+MISGY +G +EAL + MRL V
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291
Query: 241 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 300
+ + AS++ +CA + +H +VK+G F+ + L+ Y+K M ALR
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 301 VFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359
+F ++ +VVSW ++I+ + Q++ A F+ M++ G++P+ T S++
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTY----SVILTAL 407
Query: 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 419
+ VH +++ + +G A++D Y KLG + A VF G+ KD+++W+ ++
Sbjct: 408 PVISPSEVHAQVVKTN-YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466
Query: 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKIHARVIKNC 478
GYAQ G AI++F + + I PN+ T+ SIL + A + QG + H IK+
Sbjct: 467 AGYAQTGETEAAIKMFGELTKGG-IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR 525
Query: 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 538
L + V++ L+ MY K G I+ A +F + V WN++IS + HGQ KAL+ F+
Sbjct: 526 LDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFK 585
Query: 539 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598
+M V+ D +TF+ + AC+H+GLV EG++YF +M + I P +H CMVDL+ RA
Sbjct: 586 EMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRA 645
Query: 599 GHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658
G L A I+NMP ++IW +L ACR+H ELG +A++++ + E+ YVL+S
Sbjct: 646 GQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLS 705
Query: 659 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELR 718
N+YA G W+ +VR L +R +KK PG+S IEV NK F G+R+HP ++IY +L
Sbjct: 706 NMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLE 765
Query: 719 NLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLR 778
+L+ ++K LGY PD S+VLQD++++ KE +L HSERLAIAFG+I++P SP+ I KNLR
Sbjct: 766 DLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLR 825
Query: 779 VCGDCHNWTKFISQITEREIIVRDSNRFHHF-KDGICSCGDYW 820
VCGDCH K I++I EREI+VRDSNRFHHF DG+CSCGD+W
Sbjct: 826 VCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/806 (36%), Positives = 465/806 (57%), Gaps = 41/806 (5%)
Query: 54 FQSCTKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLG---DLSFSRHTFDHI-SYRN 109
++C + +K H L G V + TKLV LG LSF++ F++ SY
Sbjct: 39 LKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGT 98
Query: 110 VYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC---RNLVDGKKIH 166
+ +NS+I Y G +EA+ F + + SG+ PD YTFP L AC R +G +IH
Sbjct: 99 CFMYNSLIRGYASSGLCNEAILLFLRM-MNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157
Query: 167 CSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAV 226
++K+G+ D+FV SL+H Y G + ARK+FD+M R+ SW +MI GY + A
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217
Query: 227 EALDILDEM-RLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 285
+A+D+ M R E V+ + +T+ ++ CA+ +++ +G ++ +I G+E N + + L
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSAL 277
Query: 286 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 345
++MY K + A R+FD+ ++ N++ + Y + A G F M +G++PD
Sbjct: 278 VDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 337
Query: 346 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL----------- 394
++++S S +QL + +S HG+++R G+ D I NA++DMY K
Sbjct: 338 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-NALIDMYMKCHRQDTAFRIFD 396
Query: 395 --------------------GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 434
G +++A FE +P K+++SWNT+I+G Q L EAIEV
Sbjct: 397 RMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456
Query: 435 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 494
F M+ +N + T +SI A H+GAL I+ + KN + DV + T LVDM+
Sbjct: 457 FCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFS 516
Query: 495 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 554
+CG + AMS+F + W A I + G ++A+ F M+++G++PD + FV
Sbjct: 517 RCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVG 576
Query: 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR 614
LTACSH GLV +G+ F+ M + G+ P HYGCMVDL GRAG L A I++MP+
Sbjct: 577 ALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME 636
Query: 615 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 674
P+ IW +LL ACR+ GN+E+ A A++++ + E G YVL+SN+YA+ G+W + +VR
Sbjct: 637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVR 696
Query: 675 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKS 734
+++GL+K PG SSI++ K F +G+ +HP+ I L ++ + LG+VPD S
Sbjct: 697 LSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLS 756
Query: 735 FVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQIT 794
VL DV+E EK +L+ HSE+LA+A+G+ISS + I+I KNLRVC DCH++ KF S++
Sbjct: 757 NVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVY 816
Query: 795 EREIIVRDSNRFHHFKDGICSCGDYW 820
REII+RD+NRFH+ + G CSCGD+W
Sbjct: 817 NREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| 359475368 | 891 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.915 | 0.739 | 0.0 | |
| 147795292 | 891 | hypothetical protein VITISV_001772 [Viti | 0.995 | 0.915 | 0.736 | 0.0 | |
| 359475558 | 848 | PREDICTED: pentatricopeptide repeat-cont | 0.946 | 0.915 | 0.751 | 0.0 | |
| 449439005 | 816 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.992 | 0.661 | 0.0 | |
| 124360536 | 1083 | Tetratricopeptide-like helical [Medicago | 0.965 | 0.731 | 0.664 | 0.0 | |
| 357509307 | 1092 | Pentatricopeptide repeat-containing prot | 0.960 | 0.721 | 0.664 | 0.0 | |
| 356569698 | 824 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.974 | 0.672 | 0.0 | |
| 297798510 | 824 | EMB2758 [Arabidopsis lyrata subsp. lyrat | 0.991 | 0.986 | 0.626 | 0.0 | |
| 18418348 | 823 | pentatricopeptide repeat-containing prot | 0.989 | 0.985 | 0.624 | 0.0 | |
| 3297823 | 844 | putative protein [Arabidopsis thaliana] | 0.804 | 0.781 | 0.620 | 0.0 |
| >gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1268 bits (3280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/817 (73%), Positives = 693/817 (84%), Gaps = 1/817 (0%)
Query: 4 LAPSCKDRRLCKLLPLLQAHRPLFSAAANSLQISPDCLENESREIDFDDLFQSCTKLHHV 63
LAP+ K R K LP + LFSAA +S Q S L N++ EIDF+ LF S TK
Sbjct: 76 LAPTLKSRYTSKFLPPRRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFA 135
Query: 64 KRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRC 123
K LHALLVV+GK++++F ST+LVN YANLGD+S SR TFD I ++VY WNSMIS YV
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195
Query: 124 GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 183
G EA+ CFYQ L S +RPDFYTFPPVLKAC LVDG+KIHC KLGF+W+VFVAAS
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAAS 255
Query: 184 LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 243
L+HMY RFG +AR LFDDMP RD GSWNAMISG Q+GNA +ALD+LDEMRLEG+ M+
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315
Query: 244 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 303
+TV SILPVC + +I + +LIHLY++KHGLEF+LFVSN LINMYAKFG + A + F
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375
Query: 304 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 363
QM DVVSWNSIIAAYEQ++DP+TAHGFF MQ G QPDLLTLVSL SIVAQ DC+N
Sbjct: 376 QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKN 435
Query: 364 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 423
SRSVHGFIMRRGW MEDV+IGNAVVDMYAKLG+++SA VFE +PVKDVISWNTLITGYA
Sbjct: 436 SRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 495
Query: 424 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 483
QNGLASEAIEV++MMEEC EI PNQGT+VSILPAY+HVGAL+QG+KIH RVIK L DV
Sbjct: 496 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV 555
Query: 484 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543
FVATCL+D+YGKCGR+ DAMSLFYQVP+ SSV WNAIISCHGIHG +K L F +MLDE
Sbjct: 556 FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 615
Query: 544 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 603
GV+PDH+TFVSLL+ACSHSG V EG+ F +MQ E+GIKP LKHYGCMVDL GRAG+L M
Sbjct: 616 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEM 674
Query: 604 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663
A++FI++MP++PDASIWGALLGACRIHGN+ELG ASDRLFEVDS+NVGYYVL+SNIYAN
Sbjct: 675 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 734
Query: 664 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 723
VGKWEGVD+VRSLAR+RGLKKTPGWS+IEVN KVD+FYTGN++HPK ++IY+ELR LTAK
Sbjct: 735 VGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAK 794
Query: 724 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 783
MKSLGY+PD SFVLQDVEEDEKEHILTSHSERLAIAFGIIS+PPKSPI+IFKNLRVCGDC
Sbjct: 795 MKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDC 854
Query: 784 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
HN TKFIS+IT+REI+VRDSNRFHHFKDGICSCGDYW
Sbjct: 855 HNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/817 (73%), Positives = 692/817 (84%), Gaps = 1/817 (0%)
Query: 4 LAPSCKDRRLCKLLPLLQAHRPLFSAAANSLQISPDCLENESREIDFDDLFQSCTKLHHV 63
LAP+ K R K LP + LFSAA +S Q S L N++ EIDF+ LF S TK
Sbjct: 76 LAPTLKSRHTSKFLPPRRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFA 135
Query: 64 KRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRC 123
K LHALLVV+GK++++F ST+LVN YANLGD+S SR TFD I ++VYTWNSMIS YV
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195
Query: 124 GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAAS 183
G EA+ CFYQ L S +RPDFYTFPPVLKAC LVDG++IHC KLGF+W+VFVAAS
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAAS 255
Query: 184 LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 243
L+HMY RFG +AR LFDDMP RD GSWNAMISG Q+GNA +ALD+LDEMRLEG+ M+
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN 315
Query: 244 PITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFD 303
+TV SILPVC + +I + +LIHLY++KHGLEF+LFVSN LINMYAKFG + A + F
Sbjct: 316 FVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQ 375
Query: 304 QMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 363
QM DVVSWNSIIAAYEQ++DP+TAHGFF MQ G QPDLLTLVSL SIVAQ DC+N
Sbjct: 376 QMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKN 435
Query: 364 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYA 423
SRSVHGFIMRRGW MEDV+IGNAVVDMYAKLG+++SA VFE + VKDVISWNTLITGYA
Sbjct: 436 SRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYA 495
Query: 424 QNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDV 483
QNGLASEAIEV++MMEEC EI PNQGT+VSILPAY+HVGAL+QG++IH RVIK L DV
Sbjct: 496 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDV 555
Query: 484 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543
FVATCL+D+YGKCGR+ DAMSLFYQVP+ SSV WNAIISCHGIHG +K L F +MLDE
Sbjct: 556 FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 615
Query: 544 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 603
GV+PDH+TFVSLL+ACSHSG V EG+ F +MQ E+GIKP LKHYGCMVDL GRAG+L M
Sbjct: 616 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEM 674
Query: 604 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663
A+ FI++MP++PDASIWGALLGACRIHGN+ELG ASDRLFEVDS+NVGYYVL+SNIYAN
Sbjct: 675 AYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 734
Query: 664 VGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAK 723
VGKWEGVD+VRSLAR+RGLKKTPGWS+IEVN KVD+FYTGN++HPK ++IY+ELR LTAK
Sbjct: 735 VGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAK 794
Query: 724 MKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDC 783
MKSLGY+PD SFVLQDVEEDEKEHILTSHSERLAIAFGIIS+PPKSPI+IFKNLRVCGDC
Sbjct: 795 MKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDC 854
Query: 784 HNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
HN TKFIS+IT+REI+VRDSNRFHHFKDGICSCGDYW
Sbjct: 855 HNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/777 (75%), Positives = 669/777 (86%), Gaps = 1/777 (0%)
Query: 44 ESREIDFDDLFQSCTKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFD 103
++ EIDF+ LF SCTK KRLHALLVVSGKI++ F S +LVN YA+LGD+S SR TFD
Sbjct: 73 KNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFD 132
Query: 104 HISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGK 163
I ++VYTWNSMIS YVR G EA+DCFYQ L + + DFYTFPPVLKAC+ LVDG+
Sbjct: 133 QIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGR 192
Query: 164 KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 223
KIHC V KLGF+WDVFVAASL+HMY RFG +AR LFDDMP RD GSWNAMISG Q+G
Sbjct: 193 KIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNG 252
Query: 224 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 283
NA +ALD+LDEMRLEG++MD +TVASILPVCA+ +I + LIHLY++KHGLEF LFVSN
Sbjct: 253 NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSN 312
Query: 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 343
LINMYAKFG + A +VF QM RDVVSWNSIIAAYEQ++DP+TA GFF MQ G++P
Sbjct: 313 ALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP 372
Query: 344 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 403
DLLTLVSL SI AQ D +NSRSVHGFIMRRGW ME V+IGNAV+DMYAKLG+I+SA V
Sbjct: 373 DLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKV 432
Query: 404 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463
F +PVKDV+SWNTLI+GY QNGLASEAIEV++MMEEC EI NQGT+VSIL AY+HVGA
Sbjct: 433 FNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGA 492
Query: 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 523
L+QG++IH +IK L DVFV TCL+D+YGKCGR+ DAM LFYQVPR SSVPWNAIISC
Sbjct: 493 LQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISC 552
Query: 524 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 583
HGIHG G+KAL FR+M DEGV+PDH+TF+SLL+ACSHSGLV EG+ +FH+MQ E+GIKP
Sbjct: 553 HGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYGIKP 611
Query: 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 643
LKHYGCMVDL GRAG L MA++FI++MP+ PDASIWGALLGACRIHGN+ELG ASDRL
Sbjct: 612 SLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRL 671
Query: 644 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 703
FEVDSENVGYYVL+SNIYANVGKWEGVD+VRSLAR+RGLKKTPGWSSIEVN +VDIFYTG
Sbjct: 672 FEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTG 731
Query: 704 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGII 763
N++HPK ++IY ELR LTAKMKSLGY+PD SFVLQDVEEDEKEHILTSHSERLAIAFGII
Sbjct: 732 NQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGII 791
Query: 764 SSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
S+PPKS I+IFKNLRVCGDCHN TKFIS+ITEREI+VRDS RFHHFK+GICSCGDYW
Sbjct: 792 STPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Cucumis sativus] gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/813 (66%), Positives = 659/813 (81%), Gaps = 3/813 (0%)
Query: 8 CKDRRLCKLLPLLQAHRPLFSAAANSLQISPDCLENESREIDFDDLFQSCTKLHHVKRLH 67
CK RR+ P QA L+SA A + D +ENE REIDF+ +F CTK+H K+LH
Sbjct: 7 CKWRRVSLFKPSFQAC-SLYSATAAPKYL--DGVENEKREIDFNRIFLYCTKVHLAKQLH 63
Query: 68 ALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLS 127
ALLVVSGK +++F S KL+N YA LGD+ +R TFD I ++VYTWNSMIS Y R G
Sbjct: 64 ALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFH 123
Query: 128 EAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHM 187
AVDCF +F TS L+ D YTFPPV++AC NL DG+K+HC VLKLGFE DV++AAS +H
Sbjct: 124 AAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHF 183
Query: 188 YCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 247
Y RFG ++A LFD+M +RD G+WNAMISG+ +G EAL++ DEMR + VSMD +T+
Sbjct: 184 YSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTI 243
Query: 248 ASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME 307
+S+LP+C + D+I+SG+LIH+Y +K GLEF+LFV N LINMYAKFG +R A +F+QM
Sbjct: 244 SSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKV 303
Query: 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367
RD+VSWNS++AA+EQ+ P+ A G + M G+ PDLLTLVSL S+ A+L + +SRS+
Sbjct: 304 RDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSI 363
Query: 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 427
HGF+ RR WF+ D+ +GNA++DMYAKLG I+SA VFEGLPVKDVISWN+LITGY+QNGL
Sbjct: 364 HGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGL 423
Query: 428 ASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT 487
A+EAI+V+ M + PNQGT+VSIL A+S +GAL+QG+K H ++IKN L FD+FV+T
Sbjct: 424 ANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVST 483
Query: 488 CLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547
CLVDMYGKCG++ DA+SLFY+VP SSV WNAIISCHG+HG G KA+ F++M EGV+P
Sbjct: 484 CLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKP 543
Query: 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 607
DHITFVSLL+ACSHSGLV EGQ F +MQE +GI+P LKHYGCMVDLFGRAGHL A NF
Sbjct: 544 DHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNF 603
Query: 608 IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 667
++NMPVRPD S+WGALLGACRIH N+EL SD L +V+SENVGYYVL+SNIYA +G W
Sbjct: 604 VKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHW 663
Query: 668 EGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSL 727
EGVDEVRSLARDRGLKKTPGWSSIEV+ K+D+FYTGN+THPK E+IY ELRNLTAKMKS+
Sbjct: 664 EGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSI 723
Query: 728 GYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWT 787
GYVPD +FVLQDVE+DEKE+ILTSHSERLA+AFGIIS+PPK+ +QIFKNLRVCGDCHN T
Sbjct: 724 GYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNAT 783
Query: 788 KFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
KFIS+ITEREIIVRDSNRFHHFKDG+CSCGDYW
Sbjct: 784 KFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/805 (66%), Positives = 664/805 (82%), Gaps = 13/805 (1%)
Query: 16 LLPLLQAHRPLFSAAANSLQISPDCLENESREIDFDDLFQSCTKLHHVKRLHALLVVSGK 75
+L LL++ + +A SL ++ DF+ LF SC ++ K+LHALL+V GK
Sbjct: 1 MLSLLKSVSKFYKSATTSLH----------KDADFNALFNSCVNVNATKKLHALLLVFGK 50
Query: 76 IKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQ 135
+ + STKL+N Y GD+S SR TFD+I +N+++WNS+IS YVR G+ EA++C Q
Sbjct: 51 SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110
Query: 136 -FTLTSG--LRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 192
F++ G LRPDFYTFPP+LKAC +LVDGKK+HC V K+GFE DVFVAASL+H+Y R+G
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170
Query: 193 LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 252
+ +VA K+F DMPV+D GSWNAMISG+CQ+GNA AL +L+ M+ EGV MD ITVASILP
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230
Query: 253 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 312
VCA+SD++++G+LIHL+++KHGL+ ++FVSN LINMY+KFG ++ A VFDQM RD+VS
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290
Query: 313 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 372
WNSIIAAYEQ+NDP TA FF MQ GI+PDLLT+VSLTSI +QL+D R SRS+ GF++
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350
Query: 373 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 432
RR W +DV+IGNA+V+MYAKLG +N A VF+ LP KD ISWNTL+TGY QNGLASEAI
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAI 410
Query: 433 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492
+ + MMEEC + PNQGT+VSI+PAYSHVGAL+QG+KIHA++IKN L DVFVATCL+D+
Sbjct: 411 DAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDL 470
Query: 493 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 552
YGKCGR++DAMSLFY++PR +SVPWNAII+ GIHG+G++AL F+ ML E V+ DHITF
Sbjct: 471 YGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITF 530
Query: 553 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 612
VSLL+ACSHSGLV EGQ+ F +MQ+E+GIKP LKHYGCMVDL GRAG+L A+ ++NMP
Sbjct: 531 VSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMP 590
Query: 613 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 672
++PDASIWGALL AC+I+GN ELG +ASDRL EVDSENVGYYVL+SNIYAN KWEGV +
Sbjct: 591 IQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIK 650
Query: 673 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 732
VRSLARDRGL+KTPGWSS+ V +K ++FYTGN+THPKY +IY EL+ L+AKMKSLGYVPD
Sbjct: 651 VRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPD 710
Query: 733 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 792
SFV QD+EEDEKE IL SHSERLAIAFGIIS+PP+SPI+IFKNLRVCGDCHN TK+IS+
Sbjct: 711 YSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISR 770
Query: 793 ITEREIIVRDSNRFHHFKDGICSCG 817
I+EREI+VRDSNRFHHFKDGICSC
Sbjct: 771 ISEREIVVRDSNRFHHFKDGICSCA 795
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/801 (66%), Positives = 661/801 (82%), Gaps = 13/801 (1%)
Query: 16 LLPLLQAHRPLFSAAANSLQISPDCLENESREIDFDDLFQSCTKLHHVKRLHALLVVSGK 75
+L LL++ + +A SL ++ DF+ LF SC ++ K+LHALL+V GK
Sbjct: 1 MLSLLKSVSKFYKSATTSLH----------KDADFNALFNSCVNVNATKKLHALLLVFGK 50
Query: 76 IKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQ 135
+ + STKL+N Y GD+S SR TFD+I +N+++WNS+IS YVR G+ EA++C Q
Sbjct: 51 SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110
Query: 136 -FTLTSG--LRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFG 192
F++ G LRPDFYTFPP+LKAC +LVDGKK+HC V K+GFE DVFVAASL+H+Y R+G
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170
Query: 193 LANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 252
+ +VA K+F DMPV+D GSWNAMISG+CQ+GNA AL +L+ M+ EGV MD ITVASILP
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230
Query: 253 VCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS 312
VCA+SD++++G+LIHL+++KHGL+ ++FVSN LINMY+KFG ++ A VFDQM RD+VS
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290
Query: 313 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 372
WNSIIAAYEQ+NDP TA FF MQ GI+PDLLT+VSLTSI +QL+D R SRS+ GF++
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350
Query: 373 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAI 432
RR W +DV+IGNA+V+MYAKLG +N A VF+ LP KD ISWNTL+TGY QNGLASEAI
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAI 410
Query: 433 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492
+ + MMEEC + PNQGT+VSI+PAYSHVGAL+QG+KIHA++IKN L DVFVATCL+D+
Sbjct: 411 DAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDL 470
Query: 493 YGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 552
YGKCGR++DAMSLFY++PR +SVPWNAII+ GIHG+G++AL F+ ML E V+ DHITF
Sbjct: 471 YGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITF 530
Query: 553 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP 612
VSLL+ACSHSGLV EGQ+ F +MQ+E+GIKP LKHYGCMVDL GRAG+L A+ ++NMP
Sbjct: 531 VSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMP 590
Query: 613 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 672
++PDASIWGALL AC+I+GN ELG +ASDRL EVDSENVGYYVL+SNIYAN KWEGV +
Sbjct: 591 IQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIK 650
Query: 673 VRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPD 732
VRSLARDRGL+KTPGWSS+ V +K ++FYTGN+THPKY +IY EL+ L+AKMKSLGYVPD
Sbjct: 651 VRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPD 710
Query: 733 KSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQ 792
SFV QD+EEDEKE IL SHSERLAIAFGIIS+PP+SPI+IFKNLRVCGDCHN TK+IS+
Sbjct: 711 YSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISR 770
Query: 793 ITEREIIVRDSNRFHHFKDGI 813
I+EREI+VRDSNRFHHFKDGI
Sbjct: 771 ISEREIVVRDSNRFHHFKDGI 791
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1128 bits (2917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/810 (67%), Positives = 662/810 (81%), Gaps = 7/810 (0%)
Query: 18 PLLQAHRP-LFSAAANSLQ--ISPD----CLENESREIDFDDLFQSCTKLHHVKRLHALL 70
P+LQ +P ++ ++SLQ IS D +N + +DF+ +F+SCT ++ K+LHALL
Sbjct: 15 PILQLQQPCIYHFFSSSLQHKISHDPDNKNNKNNNVVVDFNLVFRSCTNINVAKQLHALL 74
Query: 71 VVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAV 130
+V GK + V T+LV YA LGDLS S TF HI +N+++WNSM+S YVR GR +++
Sbjct: 75 LVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSM 134
Query: 131 DCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 190
DC + SG+RPDFYTFPPVLKAC +L DG+K+HC VLK+GFE DV+VAASL+H+Y R
Sbjct: 135 DCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSR 194
Query: 191 FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 250
FG VA K+F DMPVRD GSWNAMISG+CQ+GN EAL +LD M+ E V MD +TV+S+
Sbjct: 195 FGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSM 254
Query: 251 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 310
LP+CA+S++++ G+L+HLY++KHGLE ++FVSN LINMY+KFG ++ A RVFD M RD+
Sbjct: 255 LPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDL 314
Query: 311 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 370
VSWNSIIAAYEQ++DP+TA GFF M G++PDLLT+VSL SI QL+D R R+VHGF
Sbjct: 315 VSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGF 374
Query: 371 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 430
++R W D++IGNA+V+MYAKLG I+ A AVFE LP +DVISWNTLITGYAQNGLASE
Sbjct: 375 VVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASE 434
Query: 431 AIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490
AI+ + MMEE I PNQGT+VSILPAYSHVGAL+QG+KIH R+IKNCL DVFVATCL+
Sbjct: 435 AIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLI 494
Query: 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI 550
DMYGKCGR++DAMSLFY++P+ +SVPWNAIIS GIHG G+KAL F+ M +GV+ DHI
Sbjct: 495 DMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHI 554
Query: 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 610
TFVSLL+ACSHSGLV E Q F MQ+E+ IKP+LKHYGCMVDLFGRAG+L A+N + N
Sbjct: 555 TFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSN 614
Query: 611 MPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670
MP++ DASIWG LL ACRIHGN ELG ASDRL EVDSENVGYYVL+SNIYANVGKWEG
Sbjct: 615 MPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGA 674
Query: 671 DEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 730
+VRSLARDRGL+KTPGWSS+ V + V++FY GN++HP+ +IY+ELR L AKMKSLGYV
Sbjct: 675 VKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYV 734
Query: 731 PDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFI 790
PD SFVLQDVEEDEKE ILTSHSERLAI FGIIS+PPKSPI+IFKNLRVCGDCHN TK+I
Sbjct: 735 PDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYI 794
Query: 791 SQITEREIIVRDSNRFHHFKDGICSCGDYW 820
S+ITEREIIVRDSNRFHHFKDGICSCGDYW
Sbjct: 795 SKITEREIIVRDSNRFHHFKDGICSCGDYW 824
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata] gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/824 (62%), Positives = 645/824 (78%), Gaps = 11/824 (1%)
Query: 1 MFRLAPSCKDRRLCKLLPLLQAHRPLFSAAANSLQISPDCLEN--ESREID-FDDLFQSC 57
+FR P+CK R ++L + A FSA+AN+LQ DC +N ES+EID LF+ C
Sbjct: 8 LFRQVPTCKGGRFTRVLQSVGAVVREFSASANALQ---DCWKNGNESKEIDDVHTLFRYC 64
Query: 58 TKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMI 117
T L K LHA LVVS I+ V S KLVN Y LG+++ +R+TFDHI R+VY WN MI
Sbjct: 65 TNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMI 124
Query: 118 SVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWD 177
S Y R G SE + CF F L+SGL+PD+ TFP VLKACRN+ DG KIHC LK GF WD
Sbjct: 125 SGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFMWD 184
Query: 178 VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRL 237
V+VAASL+H+YCR+G AR LFD+MP RD GSWNAMISGYCQSGNA EAL + D +R
Sbjct: 185 VYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR- 243
Query: 238 EGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 297
+MD +TV S+L C + + G+ IH Y +KHGLE LFVSN LI++YA+FG ++
Sbjct: 244 ---AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKD 300
Query: 298 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 357
+VFD+M RD++SWNSII AYE + P+ A F M+ + IQPD LTL+SL SI++Q
Sbjct: 301 CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQ 360
Query: 358 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 417
L + R RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++SA AVF LP KDVISWNT
Sbjct: 361 LGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNT 420
Query: 418 LITGYAQNGLASEAIEVFQMMEE-CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK 476
+I+GYAQNG ASEAIE++ +MEE EI+ NQGT+VS+LPA S GALRQG+K+H R++K
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLK 480
Query: 477 NCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 536
N L DVFV T L DMYGKCGR+DDA+SLFYQ+PR +SVPWN +I+CHG HG G+KA+
Sbjct: 481 NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 540
Query: 537 FRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 596
F++MLDEGV+PDHITFV+LL+ACSHSGLV EG+ F MMQ ++GI P LKHYGCMVDL+G
Sbjct: 541 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYG 600
Query: 597 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656
RAG L +A NFI++MP++PDASIWGALL ACR+HGN++LG +AS+ LFEV+ E+VGY+VL
Sbjct: 601 RAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 660
Query: 657 MSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDE 716
+SN+YA+ GKWEGVDE+RS+ +GL+KTPGWSS+EV+NKV++FYTGN+THP YE++Y E
Sbjct: 661 LSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 720
Query: 717 LRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKN 776
L L K+K +GYVPD FVLQDVE+DEKEHIL SHSERLA+AF +I++P K+ I+IFKN
Sbjct: 721 LTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKN 780
Query: 777 LRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
LRVCGDCH+ TKFIS+ITEREIIVRDSNRFHHFK+G+CSCGDYW
Sbjct: 781 LRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/821 (62%), Positives = 639/821 (77%), Gaps = 10/821 (1%)
Query: 3 RLAPSCKDRRLCKLLPLLQAHRPLFSAAANSLQISPDCLEN--ESREID-FDDLFQSCTK 59
R P+CK R ++L + + FSA+AN+LQ DC +N ES+EID LF+ CT
Sbjct: 10 RQIPTCKGGRFTRVLQSIGSVIREFSASANALQ---DCWKNGNESKEIDDVHTLFRYCTN 66
Query: 60 LHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISV 119
L K LHA LVVS +I+ V S KLVN Y LG+++ +RHTFDHI R+VY WN MIS
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 120 YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVF 179
Y R G SE + CF F L+SGL PD+ TFP VLKACR ++DG KIHC LK GF WDV+
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVY 186
Query: 180 VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 239
VAASL+H+Y R+ AR LFD+MPVRD GSWNAMISGYCQSGNA EAL + + +R
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR--- 243
Query: 240 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 299
+MD +TV S+L C + + G+ IH Y +KHGLE LFVSN LI++YA+FG +R
Sbjct: 244 -AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQ 302
Query: 300 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359
+VFD+M RD++SWNSII AYE + P+ A F M+ + IQPD LTL+SL SI++QL
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Query: 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 419
D R RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++SA AVF LP DVISWNT+I
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422
Query: 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 479
+GYAQNG ASEAIE++ +MEE EI NQGT+VS+LPA S GALRQG+K+H R++KN L
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482
Query: 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 539
DVFV T L DMYGKCGR++DA+SLFYQ+PR +SVPWN +I+CHG HG G+KA+ F++
Sbjct: 483 YLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 540 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 599
MLDEGV+PDHITFV+LL+ACSHSGLV EGQ F MMQ ++GI P LKHYGCMVD++GRAG
Sbjct: 543 MLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAG 602
Query: 600 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659
L A FI++M ++PDASIWGALL ACR+HGN++LG +AS+ LFEV+ E+VGY+VL+SN
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSN 662
Query: 660 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 719
+YA+ GKWEGVDE+RS+A +GL+KTPGWSS+EV+NKV++FYTGN+THP YE++Y EL
Sbjct: 663 MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTA 722
Query: 720 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRV 779
L AK+K +GYVPD FVLQDVE+DEKEHIL SHSERLAIAF +I++P K+ I+IFKNLRV
Sbjct: 723 LQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRV 782
Query: 780 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
CGDCH+ TKFIS+ITEREIIVRDSNRFHHFK+G+CSCGDYW
Sbjct: 783 CGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana] gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/679 (62%), Positives = 524/679 (77%), Gaps = 19/679 (2%)
Query: 100 HTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL 159
HTFDHI R+VY WN MIS Y R G SE + CF F L+SGL PD+ TFP VLKACR +
Sbjct: 40 HTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV 99
Query: 160 VDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGY 219
+DG KIHC LK GF WDV+VAASL+H+Y R+ AR LFD+MPVRD GSWNAMISGY
Sbjct: 100 IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGY 159
Query: 220 CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNL 279
CQSGNA EAL + + +R +MD +TV S+L C + + G+ IH Y +KHGLE L
Sbjct: 160 CQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL 215
Query: 280 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQA 339
+R +VFD+M RD++SWNSII AYE + P+ A F M+ +
Sbjct: 216 ---------------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLS 260
Query: 340 GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 399
IQPD LTL+SL SI++QL D R RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++S
Sbjct: 261 RIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 320
Query: 400 ACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYS 459
A AVF LP DVISWNT+I+GYAQNG ASEAIE++ +MEE EI NQGT+VS+LPA S
Sbjct: 321 ARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACS 380
Query: 460 HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNA 519
GALRQG+K+H R++KN L DVFV T L DMYGKCGR++DA+SLFYQ+PR +SVPWN
Sbjct: 381 QAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNT 440
Query: 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF 579
+I+CHG HG G+KA+ F++MLDEGV+PDHITFV+LL+ACSHSGLV EGQ F MMQ ++
Sbjct: 441 LIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDY 500
Query: 580 GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 639
GI P LKHYGCMVD++GRAG L A FI++M ++PDASIWGALL ACR+HGN++LG +A
Sbjct: 501 GITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIA 560
Query: 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDI 699
S+ LFEV+ E+VGY+VL+SN+YA+ GKWEGVDE+RS+A +GL+KTPGWSS+EV+NKV++
Sbjct: 561 SEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEV 620
Query: 700 FYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIA 759
FYTGN+THP YE++Y EL L AK+K +GYVPD FVLQDVE+DEKEHIL SHSERLAIA
Sbjct: 621 FYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIA 680
Query: 760 FGIISSPPKSPIQIFKNLR 778
F +I++P K+ I+IFKNLR
Sbjct: 681 FALIATPAKTTIRIFKNLR 699
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.989 | 0.985 | 0.619 | 1e-281 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.930 | 0.943 | 0.391 | 8.5e-152 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.897 | 0.845 | 0.402 | 2.4e-147 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.903 | 0.898 | 0.361 | 1.6e-143 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.931 | 0.964 | 0.367 | 5.3e-143 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.906 | 0.834 | 0.380 | 1.1e-142 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.881 | 0.834 | 0.382 | 7e-141 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.936 | 0.721 | 0.365 | 2.1e-139 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.914 | 0.773 | 0.372 | 2.4e-138 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.921 | 0.870 | 0.372 | 3.6e-137 |
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2707 (958.0 bits), Expect = 1.0e-281, P = 1.0e-281
Identities = 509/821 (61%), Positives = 631/821 (76%)
Query: 3 RLAPSCKDRRLCKLLPLLQAHRPLFSAAANSLQISPDCLEN--ESREID-FDDLFQSCTK 59
R P+CK R ++L + + FSA+AN+LQ DC +N ES+EID LF+ CT
Sbjct: 10 RQIPTCKGGRFTRVLQSIGSVIREFSASANALQ---DCWKNGNESKEIDDVHTLFRYCTN 66
Query: 60 LHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISV 119
L K LHA LVVS +I+ V S KLVN Y LG+++ +RHTFDHI R+VY WN MIS
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 120 YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVF 179
Y R G SE + CF F L+SGL PD+ TFP VLKACR ++DG KIHC LK GF WDV+
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVY 186
Query: 180 VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 239
VAASL+H+Y R+ AR LFD+MPVRD GSWNAMISGYCQSGNA EAL + + +R
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR--- 243
Query: 240 VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHAL 299
+MD +TV S+L C + + G+ IH Y +KHGLE LFVSN LI++YA+FG +R
Sbjct: 244 -AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQ 302
Query: 300 RVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359
+VFD+M RD++SWNSII AYE + P+ A F M+ + IQPD LTL+SL SI++QL
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Query: 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLI 419
D R RSV GF +R+GWF+ED+ IGNAVV MYAKLG+++SA AVF LP DVISWNT+I
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422
Query: 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 479
+GYAQNG ASEAIE++ +MEE EI NQGT+VS+LPA S GALRQG+K+H R++KN L
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482
Query: 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 539
DVFV T L DMYGKCGR++DA+SLFYQ+PR +SVPWN +I+CHG HG G+KA+ F++
Sbjct: 483 YLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 540 MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 599
MLDEGV+PDHITFV+LL+ACSHSGLV EGQ F MMQ ++GI P LKHYGCMVD++GRAG
Sbjct: 543 MLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAG 602
Query: 600 HLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659
L A FI++M ++PDASIWGALL ACR+HGN++LG +AS+ LFEV+ E+VGY+VL+SN
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSN 662
Query: 660 IYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 719
+YA+ GKWEGVDE+RS+A +GL+KTPGWSS+EV+NKV++FYTGN+THP YE++Y EL
Sbjct: 663 MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTA 722
Query: 720 LTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXXXXXXXXXXQIFKNLRV 779
L AK+K +GYVPD FVLQDVE+DEKEHIL SHSERLAIAF +IFKNLRV
Sbjct: 723 LQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRV 782
Query: 780 CGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
CGDCH+ TKFIS+ITEREIIVRDSNRFHHFK+G+CSCGDYW
Sbjct: 783 CGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1481 (526.4 bits), Expect = 8.5e-152, P = 8.5e-152
Identities = 302/772 (39%), Positives = 457/772 (59%)
Query: 53 LFQSCTKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYT 112
L + C+ L ++++ L+ +G + F TKLV+ + G + + F+ I +
Sbjct: 43 LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102
Query: 113 WNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSV 169
+++M+ + + L +A+ F + + P Y F +LK C + + GK+IH +
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDD-VEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 170 LKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEAL 229
+K GF D+F L +MY + N ARK+FD MP RD SWN +++GY Q+G A AL
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221
Query: 230 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMY 289
+++ M E + IT+ S+LP + I G IH Y ++ G + + +S L++MY
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMY 281
Query: 290 AKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 349
AK G + A ++FD M+ER+VVSWNS+I AY Q+ +P A F M G++P ++++
Sbjct: 282 AKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVM 341
Query: 350 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 409
A L D R +H + G +V + N+++ MY K +++A ++F L
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELG-LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400
Query: 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 469
+ ++SWN +I G+AQNG +A+ F M + P+ TYVS++ A + +
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRS-RTVKPDTFTYVSVITAIAELSITHHAKW 459
Query: 470 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 529
IH V+++CL +VFV T LVDMY KCG I A +F + WNA+I +G HG
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 530 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 589
G AL F +M ++P+ +TF+S+++ACSHSGLV G + F+MM+E + I+ + HYG
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579
Query: 590 CMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649
MVDL GRAG L A +FI MPV+P +++GA+LGAC+IH N+ A++RLFE++ +
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639
Query: 650 NVGYYVLMSNIYANVGKWEGVDEVR-SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHP 708
+ GY+VL++NIY WE V +VR S+ R +GL+KTPG S +E+ N+V F++G+ HP
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLR-QGLRKTPGCSMVEIKNEVHSFFSGSTAHP 698
Query: 709 KYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXXXXXXX 768
+KIY L L +K GYVPD + VL VE D KE +L++HSE+LAI+FG
Sbjct: 699 DSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAG 757
Query: 769 XXXQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
+ KNLRVC DCHN TK+IS +T REI+VRD RFHHFK+G CSCGDYW
Sbjct: 758 TTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
Identities = 298/741 (40%), Positives = 436/741 (58%)
Query: 83 TKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGL 142
+KL Y N GDL + FD + WN +++ + G S ++ F + ++SG+
Sbjct: 133 SKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGV 191
Query: 143 RPDFYTFPPVLKA---CRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARK 199
D YTF V K+ R++ G+++H +LK GF V SL+ Y + + ARK
Sbjct: 192 EMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARK 251
Query: 200 LFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN 259
+FD+M RD SWN++I+GY +G A + L + +M + G+ +D T+ S+ CA S
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 311
Query: 260 ILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA 319
I G +H VK N L++MY+K G + A VF +M +R VVS+ S+IA
Sbjct: 312 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371
Query: 320 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME 379
Y + A F M++ GI PD+ T+ ++ + A+ + VH +I
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF- 430
Query: 380 DVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 439
D+ + NA++DMYAK G + A VF + VKD+ISWNT+I GY++N A+EA+ +F ++
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 440 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 499
E +P++ T +LPA + + A +G +IH +++N D VA LVDMY KCG +
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550
Query: 500 DDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559
A LF + V W +I+ +G+HG G +A+ F QM G+ D I+FVSLL AC
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610
Query: 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 619
SHSGLV EG R+F++M+ E I+P ++HY C+VD+ R G L A+ FI+NMP+ PDA+I
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 670
Query: 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679
WGALL CRIH +++L ++++FE++ EN GYYVLM+NIYA KWE V +R
Sbjct: 671 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 730
Query: 680 RGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQD 739
RGL+K PG S IE+ +V+IF G+ ++P+ E I LR + A+M GY P + L D
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALID 790
Query: 740 VEEDEKEHILTSHSERLAIAFGXXXXXXXXXXQIFKNLRVCGDCHNWTKFISQITEREII 799
EE EKE L HSE+LA+A G ++ KNLRVCGDCH KF+S++T REI+
Sbjct: 791 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 850
Query: 800 VRDSNRFHHFKDGICSCGDYW 820
+RDSNRFH FKDG CSC +W
Sbjct: 851 LRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 1.6e-143, Sum P(2) = 1.6e-143
Identities = 272/752 (36%), Positives = 422/752 (56%)
Query: 77 KTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQF 136
K S+ +++ + GD+S +R FD + R V TW ++ Y R EA F Q
Sbjct: 77 KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136
Query: 137 TLTSGLR-PDFYTFPPVLKACRNLVDGK---KIHCSVLKLGFEWDVFVAAS--LLHMYCR 190
+S PD TF +L C + V ++H +KLGF+ + F+ S LL YC
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCE 196
Query: 191 FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 250
++A LF+++P +DS ++N +I+GY + G E++ + +MR G T + +
Sbjct: 197 VRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGV 256
Query: 251 LPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV 310
L + G +H V G + V N +++ Y+K + +FD+M E D
Sbjct: 257 LKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDF 316
Query: 311 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 370
VS+N +I++Y Q++ + FF MQ G ++ SI A L+ + R +H
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376
Query: 371 IMRRGWFMEDVI-IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 429
+ + ++ +GN++VDMYAK + A +F+ LP + +SW LI+GY Q GL
Sbjct: 377 ALLAT--ADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHG 434
Query: 430 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 489
+++F M N + +Q T+ ++L A + +L G ++HA +I++ +VF + L
Sbjct: 435 AGLKLFTKMRGSN-LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493
Query: 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 549
VDMY KCG I DA+ +F ++P ++V WNA+IS H +G G+ A+ F +M++ G++PD
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553
Query: 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609
++ + +LTACSH G V +G YF M +GI P KHY CM+DL GR G A +
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMD 613
Query: 610 NMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDS-ENVGYYVLMSNIYANVGKWE 668
MP PD +W ++L ACRIH N L A+++LF ++ + YV MSNIYA G+WE
Sbjct: 614 EMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWE 673
Query: 669 GVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLG 728
V +V+ R+RG+KK P +S +EVN+K+ +F + ++THP ++I ++ LTA+++ G
Sbjct: 674 KVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREG 733
Query: 729 YVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXXXXXXXXXXQIFKNLRVCGDCHNWTK 788
Y PD S V+QDV+E K L HSERLA+AF + KNLR C DCH K
Sbjct: 734 YKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIK 793
Query: 789 FISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
IS+I +REI VRD++RFHHF +G+CSCGDYW
Sbjct: 794 LISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 284/773 (36%), Positives = 448/773 (57%)
Query: 52 DLFQSCTKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVY 111
D F+ T + H+ + HA +++ G + TKL ++LG + ++R F + +V+
Sbjct: 25 DFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVF 84
Query: 112 TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCS 168
+N ++ + ++ F ++ L+P+ T+ + A D G+ IH
Sbjct: 85 LFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQ 144
Query: 169 VLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEA 228
+ G + ++ + ++++ MY +F ARK+FD MP +D+ WN MISGY ++ VE+
Sbjct: 145 AVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVES 204
Query: 229 LDILDEMRLEGVS-MDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 287
+ + ++ E + +D T+ ILP A + G+ IH K G + +V I+
Sbjct: 205 IQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFIS 264
Query: 288 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 347
+Y+K G ++ +F + + D+V++N++I Y + + + F + +G + T
Sbjct: 265 LYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST 324
Query: 348 LVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL 407
LVSL + L ++HG+ ++ F+ + A+ +Y+KL I SA +F+
Sbjct: 325 LVSLVPVSGHL---MLIYAIHGYCLKSN-FLSHASVSTALTTVYSKLNEIESARKLFDES 380
Query: 408 PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 467
P K + SWN +I+GY QNGL +AI +F+ M++ +E +PN T IL A + +GAL G
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQK-SEFSPNPVTITCILSACAQLGALSLG 439
Query: 468 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 527
+H V ++V+T L+ MY KCG I +A LF + + + V WN +IS +G+H
Sbjct: 440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLH 499
Query: 528 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH 587
GQG +ALN F +ML+ G+ P +TF+ +L ACSH+GLV EG F+ M +G +P +KH
Sbjct: 500 GQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKH 559
Query: 588 YGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVD 647
Y CMVD+ GRAGHL A FI+ M + P +S+W LLGACRIH + L S++LFE+D
Sbjct: 560 YACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELD 619
Query: 648 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTH 707
+NVGY+VL+SNI++ + VR A+ R L K PG++ IE+ +F +G+++H
Sbjct: 620 PDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSH 679
Query: 708 PKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXXXXXX 767
P+ ++IY++L L KM+ GY P+ L DVEE+E+E ++ HSERLAIAFG
Sbjct: 680 PQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEP 739
Query: 768 XXXXQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
+I KNLRVC DCH TK IS+ITER I+VRD+NRFHHFKDG+CSCGDYW
Sbjct: 740 GTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 290/763 (38%), Positives = 443/763 (58%)
Query: 76 IKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISV---YVRCGRLSEAVDC 132
+ +V + LVN Y GD FD IS RN +WNS+IS + + EA C
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 189
Query: 133 FYQFTL--TSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCR 190
+ +S T L L+ GK++H L+ G E + F+ +L+ MY +
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGK 248
Query: 191 FGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASI 250
G ++ L RD +WN ++S CQ+ +EAL+ L EM LEGV D T++S+
Sbjct: 249 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 251 LPVCARSDNILSGLLIHLYIVKHG-LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERD 309
LP C+ + + +G +H Y +K+G L+ N FV + L++MY + RVFD M +R
Sbjct: 309 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 368
Query: 310 VVSWNSIIAAYEQSNDPITAHGFFTTMQQ-AGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 368
+ WN++IA Y Q+ A F M++ AG+ + T+ + + ++H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428
Query: 369 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLA 428
GF+++RG D + N ++DMY++LG I+ A +F + +D+++WNT+ITGY +
Sbjct: 429 GFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487
Query: 429 SEAIEVFQMMEECNE----------INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 478
+A+ + M+ + PN T ++ILP+ + + AL +G +IHA IKN
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547
Query: 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFR 538
L DV V + LVDMY KCG + + +F Q+P+ + + WN II +G+HG G +A++ R
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 607
Query: 539 QMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598
M+ +GV+P+ +TF+S+ ACSHSG+V EG R F++M+ ++G++P HY C+VDL GRA
Sbjct: 608 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 667
Query: 599 GHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657
G + A+ + MP + A W +LLGA RIH N+E+G +A+ L +++ +YVL+
Sbjct: 668 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727
Query: 658 SNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 717
+NIY++ G W+ EVR +++G++K PG S IE ++V F G+ +HP+ EK+ L
Sbjct: 728 ANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYL 787
Query: 718 RNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXXXXXXXXXXQIFKNL 777
L +M+ GYVPD S VL +VEEDEKE +L HSE+LAIAFG ++ KNL
Sbjct: 788 ETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNL 847
Query: 778 RVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
RVC DCH TKFIS+I +REII+RD RFH FK+G CSCGDYW
Sbjct: 848 RVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
Identities = 281/735 (38%), Positives = 423/735 (57%)
Query: 89 YANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYT 148
+ G+L + + F +S RN+++WN ++ Y + G EA+ +++ G++PD YT
Sbjct: 139 FVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYT 198
Query: 149 FPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 205
FP VL+ C + D GK++H V++ G+E D+ V +L+ MY + G AR LFD MP
Sbjct: 199 FPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258
Query: 206 VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSG 263
RD SWNAMISGY ++G E L++ MR G+S+DP +T+ S++ C + G
Sbjct: 259 RRDIISWNAMISGYFENGMCHEGLELFFAMR--GLSVDPDLMTLTSVISACELLGDRRLG 316
Query: 264 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQS 323
IH Y++ G ++ V N+L MY G R A ++F +M +D+VSW ++I+ YE +
Sbjct: 317 RDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYN 376
Query: 324 NDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII 383
P A + M Q ++PD +T+ ++ S A L D +H ++ + VI+
Sbjct: 377 FLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR-LISYVIV 435
Query: 384 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNE 443
N +++MY+K I+ A +F +P K+VISW ++I G N EA+ + M+
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-- 493
Query: 444 INPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 503
+ PN T + L A + +GAL G +IHA V++ + D F+ L+DMY +CGR++ A
Sbjct: 494 LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAW 553
Query: 504 SLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG 563
S F + WN +++ + GQG + F +M+ VRPD ITF+SLL CS S
Sbjct: 554 SQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQ 612
Query: 564 LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 623
+V +G YF M E++G+ P+LKHY C+VDL GRAG L AH FIQ MPV PD ++WGAL
Sbjct: 613 MVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGAL 671
Query: 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683
L ACRIH ++LG +++ +FE+D ++VGYY+L+ N+YA+ GKW V +VR + ++ GL
Sbjct: 672 LNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLT 731
Query: 684 KTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEED 743
G S +EV KV F + ++ HP+ ++I L KM +G D E
Sbjct: 732 VDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEI 791
Query: 744 EKEHILTSHSERLAIAFGXXXXXXXXXXQIFKNLRVCGDCHNWTKFISQITEREIIVRDS 803
++ I HSER AIAFG + KNL +C +CH+ KFIS+ REI VRD+
Sbjct: 792 SRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDA 851
Query: 804 NRFHHFKDGICSCGD 818
FHHFKDG CSCGD
Sbjct: 852 EHFHHFKDGECSCGD 866
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
Identities = 284/777 (36%), Positives = 432/777 (55%)
Query: 50 FDDLFQSCTKLHHVK---RLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHIS 106
F + +C K+ ++ +LH L++ G + LV+ Y +LG+L + H F ++S
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350
Query: 107 YRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR---NLVDGK 163
R+ T+N++I+ +CG +A++ F + L GL PD T ++ AC L G+
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHL-DGLEPDSNTLASLVVACSADGTLFRGQ 409
Query: 164 KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 223
++H KLGF + + +LL++Y + A F + V + WN M+ Y
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469
Query: 224 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 283
+ + I +M++E + + T SIL C R ++ G IH I+K + N +V +
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529
Query: 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 343
LI+MYAK G + A + + +DVVSW ++IA Y Q N A F M GI+
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 344 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 403
D + L + S A L + + +H G F D+ NA+V +Y++ G I +
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSG-FSSDLPFQNALVTLYSRCGKIEESYLA 648
Query: 404 FEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463
FE D I+WN L++G+ Q+G EA+ VF M I+ N T+ S + A S
Sbjct: 649 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASETAN 707
Query: 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 523
++QG ++HA + K + V L+ MY KCG I DA F +V + V WNAII+
Sbjct: 708 MKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINA 767
Query: 524 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 583
+ HG G +AL+ F QM+ VRP+H+T V +L+ACSH GLV +G YF M E+G+ P
Sbjct: 768 YSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP 827
Query: 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 643
+HY C+VD+ RAG L A FIQ MP++PDA +W LL AC +H NME+G A+ L
Sbjct: 828 KPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHL 887
Query: 644 FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTG 703
E++ E+ YVL+SN+YA KW+ D R +++G+KK PG S IEV N + FY G
Sbjct: 888 LELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVG 947
Query: 704 NRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXX 763
++ HP ++I++ ++LT + +GYV D +L +++ ++K+ I+ HSE+LAI+FG
Sbjct: 948 DQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLL 1007
Query: 764 XXXXXXXXQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
+ KNLRVC DCH W KF+S+++ REIIVRD+ RFHHF+ G CSC DYW
Sbjct: 1008 SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
Identities = 286/767 (37%), Positives = 430/767 (56%)
Query: 66 LHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGR 125
+H L+V +G ++ VF LV+FY G ++ + FD + RN+ +WNSMI V+ G
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268
Query: 126 LSEAVDCFYQFTLTSG---LRPDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVF 179
E+ + +G PD T VL C R + GK +H +KL + ++
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328
Query: 180 VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG 239
+ +L+ MY + G A+ +F ++ SWN M+ G+ G+ D+L +M G
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG 388
Query: 240 --VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRH 297
V D +T+ + +PVC + S +H Y +K +N V+N + YAK G + +
Sbjct: 389 EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSY 448
Query: 298 ALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 357
A RVF + + V SWN++I + QSNDP + M+ +G+ PD T+ SL S ++
Sbjct: 449 AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSK 508
Query: 358 LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 417
L R + VHGFI+R W D+ + +V+ +Y G + + A+F+ + K ++SWNT
Sbjct: 509 LKSLRLGKEVHGFIIRN-WLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNT 567
Query: 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY---SHVGALRQGIKIHARV 474
+ITGY QNG A+ VF+ M + Q +S++P + S + +LR G + HA
Sbjct: 568 VITGYLQNGFPDRALGVFRQMV----LYGIQLCGISMMPVFGACSLLPSLRLGREAHAYA 623
Query: 475 IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKAL 534
+K+ L D F+A L+DMY K G I + +F + S+ WNA+I +GIHG +A+
Sbjct: 624 LKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAI 683
Query: 535 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 594
F +M G PD +TF+ +LTAC+HSGL+ EG RY M+ FG+KP+LKHY C++D+
Sbjct: 684 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDM 743
Query: 595 FGRAGHLGMAHNFI-QNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653
GRAG L A + + M D IW +LL +CRIH N+E+G + +LFE++ E
Sbjct: 744 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPEN 803
Query: 654 YVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKI 713
YVL+SN+YA +GKWE V +VR + L+K G S IE+N KV F G R +E+I
Sbjct: 804 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 863
Query: 714 YDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXXXXXXXXXXQI 773
L K+ +GY PD V D+ E+EK L HSE+LA+ +G ++
Sbjct: 864 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 923
Query: 774 FKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
+KNLR+C DCHN K IS++ EREI+VRD+ RFHHFK+G+CSCGDYW
Sbjct: 924 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1343 (477.8 bits), Expect = 3.6e-137, P = 3.6e-137
Identities = 287/770 (37%), Positives = 440/770 (57%)
Query: 57 CTKLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSM 116
C +L ++LH + G + V T LV+ Y + R FD + RNV TW ++
Sbjct: 107 CDELFG-RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165
Query: 117 ISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA-CRNLVDGK--KIHCSVLKLG 173
IS Y R E + F + G +P+ +TF L V G+ ++H V+K G
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQ-NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224
Query: 174 FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILD 233
+ + V+ SL+++Y + G AR LFD V+ +WN+MISGY +G +EAL +
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284
Query: 234 EMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFG 293
MRL V + + AS++ +CA + +H +VK+G F+ + L+ Y+K
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT 344
Query: 294 MMRHALRVFDQM-MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 352
M ALR+F ++ +VVSW ++I+ + Q++ A F+ M++ G++P+ T
Sbjct: 345 AMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTY---- 400
Query: 353 SIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDV 412
S++ + VH +++ + + G A++D Y KLG + A VF G+ KD+
Sbjct: 401 SVILTALPVISPSEVHAQVVKTNYERSSTV-GTALLDAYVKLGKVEEAAKVFSGIDDKDI 459
Query: 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGIKIH 471
++W+ ++ GYAQ G AI++F + + I PN+ T+ SIL + A + QG + H
Sbjct: 460 VAWSAMLAGYAQTGETEAAIKMFGELTK-GGIKPNEFTFSSILNVCAATNASMGQGKQFH 518
Query: 472 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 531
IK+ L + V++ L+ MY K G I+ A +F + V WN++IS + HGQ
Sbjct: 519 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAM 578
Query: 532 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 591
KAL+ F++M V+ D +TF+ + AC+H+GLV EG++YF +M + I P +H CM
Sbjct: 579 KALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 638
Query: 592 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651
VDL+ RAG L A I+NMP ++IW +L ACR+H ELG +A++++ + E+
Sbjct: 639 VDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDS 698
Query: 652 GYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYE 711
YVL+SN+YA G W+ +VR L +R +KK PG+S IEV NK F G+R+HP +
Sbjct: 699 AAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKD 758
Query: 712 KIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGXXXXXXXXXX 771
+IY +L +L+ ++K LGY PD S+VLQD++++ KE +L HSERLAIAFG
Sbjct: 759 QIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPL 818
Query: 772 QIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFK-DGICSCGDYW 820
I KNLRVCGDCH K I++I EREI+VRDSNRFHHF DG+CSCGD+W
Sbjct: 819 LIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81767 | PP348_ARATH | No assigned EC number | 0.6248 | 0.9890 | 0.9854 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 820 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-166 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-85 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-61 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-60 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-44 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-40 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 655 bits (1692), Expect = 0.0
Identities = 303/737 (41%), Positives = 450/737 (61%), Gaps = 9/737 (1%)
Query: 85 LVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRP 144
+++ + G+L + + F + R++++WN ++ Y + G EA+ C Y L +G+RP
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL-CLYHRMLWAGVRP 185
Query: 145 DFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLF 201
D YTFP VL+ C + D G+++H V++ GFE DV V +L+ MY + G AR +F
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 202 DDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNIL 261
D MP RD SWNAMISGY ++G +E L++ MR V D +T+ S++ C +
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 262 SGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 321
G +H Y+VK G ++ V N+LI MY G A +VF +M +D VSW ++I+ YE
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 322 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDV 381
++ P A + M+Q + PD +T+ S+ S A L D +H R+G + V
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYV 424
Query: 382 IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC 441
++ NA+++MY+K I+ A VF +P KDVISW ++I G N EA+ F+ M
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-- 482
Query: 442 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 501
+ PN T ++ L A + +GAL G +IHA V++ + FD F+ L+D+Y +CGR++
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 502 AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561
A + F V WN +++ + HG+G A+ F +M++ GV PD +TF+SLL ACS
Sbjct: 543 AWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWG 621
SG+V++G YFH M+E++ I P+LKHY C+VDL GRAG L A+NFI MP+ PD ++WG
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 622 ALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681
ALL ACRIH ++ELG +A+ +FE+D +VGYY+L+ N+YA+ GKW+ V VR R+ G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 682 LKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVE 741
L PG S +EV KV F T + +HP+ ++I L KMK+ G +S + ++E
Sbjct: 722 LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIE 781
Query: 742 EDEKEHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVR 801
+ + I HSERLAIAFG+I++ P PI + KNL +C +CHN KFIS+I REI VR
Sbjct: 782 VSKDD-IFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840
Query: 802 DSNRFHHFKDGICSCGD 818
D+ +FHHFKDG CSCGD
Sbjct: 841 DTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 496 bits (1279), Expect = e-166
Identities = 212/595 (35%), Positives = 358/595 (60%), Gaps = 3/595 (0%)
Query: 227 EALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 285
EAL++ + + ++ T +++ C +I ++ ++ G E + ++ N +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 286 INMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 345
+ M+ K GM+ A R+FD+M ER++ SW +II + + A F M + G +
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224
Query: 346 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFE 405
T V + A L R + +H +++ G + D + A++DMY+K G I A VF+
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 406 GLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALR 465
G+P K ++WN+++ GYA +G + EA+ ++ M + + ++ +Q T+ ++ +S + L
Sbjct: 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLE 342
Query: 466 QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG 525
+ HA +I+ D+ T LVD+Y K GR++DA ++F ++PR + + WNA+I+ +G
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402
Query: 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 585
HG+G KA+ F +M+ EGV P+H+TF+++L+AC +SGL +G F M E IKP
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 586 KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE 645
HY CM++L GR G L A+ I+ P +P ++W ALL ACRIH N+ELG +A+++L+
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522
Query: 646 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNR 705
+ E + YV++ N+Y + G+ +V + +GL P + IEV + F++G+R
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582
Query: 706 THPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIISS 765
HP+ +IY +L L ++ GYV +++ +L DV+EDE++ HSE+LAIAFG+I++
Sbjct: 583 LHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642
Query: 766 PPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820
+P+QI ++ R+C DCH KFI+ +T+REI+VRD++RFHHFK G CSCGDYW
Sbjct: 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 5e-85
Identities = 159/508 (31%), Positives = 266/508 (52%), Gaps = 11/508 (2%)
Query: 144 PDFYTFPPVLKAC---RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKL 200
D + + + C R + +G ++ L V + ++L M+ RFG A +
Sbjct: 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143
Query: 201 FDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNI 260
F MP RD SWN ++ GY ++G EAL + M GV D T +L C ++
Sbjct: 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
Query: 261 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY 320
G +H ++V+ G E ++ V N LI MY K G + A VFD+M RD +SWN++I+ Y
Sbjct: 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263
Query: 321 EQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED 380
++ + + F TM++ + PDL+T+ S+ S L D R R +HG++++ G F D
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVD 322
Query: 381 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 440
V + N+++ MY LG A VF + KD +SW +I+GY +NGL +A+E + +ME+
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 441 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 500
+ ++P++ T S+L A + +G L G+K+H + L V VA L++MY KC ID
Sbjct: 383 -DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 501 DAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 560
A+ +F+ +P + W +II+ ++ + +AL FFRQML ++P+ +T ++ L+AC+
Sbjct: 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500
Query: 561 HSGLVSEGQR-YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI 619
G + G+ + H+++ G L + ++DL+ R G + A N Q D
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLPN--ALLDLYVRCGRMNYAWN--QFNSHEKDVVS 556
Query: 620 WGALLGACRIHGNMELGAVASDRLFEVD 647
W LL HG + +R+ E
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESG 584
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 2e-61
Identities = 119/422 (28%), Positives = 205/422 (48%), Gaps = 12/422 (2%)
Query: 213 NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK 272
N+ + C G +AL +L+ M+ V +D ++ +C + G + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 273 HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF 332
+ + N +++M+ +FG + HA VF +M ERD+ SWN ++ Y ++ A
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 333 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392
+ M AG++PD+ T + + D R VH ++R G F DV + NA++ MY
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYV 233
Query: 393 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV 452
K G + SA VF+ +P +D ISWN +I+GY +NG E +E+F M E ++P+ T
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTIT 292
Query: 453 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS 512
S++ A +G R G ++H V+K DV V L+ MY G +A +F ++
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 572
+V W A+IS + +G DKAL + M + V PD IT S+L+AC+ G + G
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG---- 408
Query: 573 HMMQEEFGIKPHLKHY----GCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACR 628
+ E + L Y +++++ + + A N+P D W +++ R
Sbjct: 409 -VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLR 466
Query: 629 IH 630
++
Sbjct: 467 LN 468
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 5e-60
Identities = 135/460 (29%), Positives = 235/460 (51%), Gaps = 12/460 (2%)
Query: 115 SMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLK 171
S I V CGR EA++ F T+ +++AC L K ++ V
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 172 LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDI 231
GFE D ++ +L M+ + G+ AR+LFD+MP R+ SW +I G +GN EA +
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211
Query: 232 LDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 291
EM +G +P T +L A + +G +H ++K G+ + FVS LI+MY+K
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 292 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL 351
G + A VFD M E+ V+WNS++A Y A + M+ +G+ D T +
Sbjct: 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 352 TSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-AVVDMYAKLGIINSACAVFEGLPVK 410
I ++L +++ H ++R G+ ++ I+ N A+VD+Y+K G + A VF+ +P K
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRK 389
Query: 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKI 470
++ISWN LI GY +G ++A+E+F+ M + PN T++++L A + G QG +I
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 471 HARVIKNC-LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP-WNAIISCHGIHG 528
+ +N + C++++ G+ G +D+A ++ + P +V W A+++ IH
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508
Query: 529 QGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSE 567
+ ++ G+ P+ + +V LL + SG +E
Sbjct: 509 NLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAE 546
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-44
Identities = 120/456 (26%), Positives = 209/456 (45%), Gaps = 51/456 (11%)
Query: 50 FDDLFQSCTKLHH---VKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHIS 106
+D L ++C L VK ++ + SG + +++ + G L +R FD +
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 107 YRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNL---VDGK 163
RN+ +W ++I V G EA F + G + TF +L+A L G+
Sbjct: 186 ERNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 164 KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSG 223
++HC VLK G D FV+ +L+ MY + G AR +FD MP + + +WN+M++GY G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 224 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 283
+ EAL + EMR GVS+D T + ++ + +R + H +++ G ++ +
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 343
L+++Y+K+G M A VFD+M ++++SWN++IA Y A F M G+ P
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 344 DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN-----------AVVDMYA 392
+ +T +A L+ CR S G +GW + + N ++++
Sbjct: 425 NHVTF------LAVLSACRYS----GLS-EQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 393 KLGIINSACAVFEGLPVKDVIS-WNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQ 448
+ G+++ A A+ P K ++ W L+T + L A E M P +
Sbjct: 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG------PEK 527
Query: 449 -GTYVSILPAYSHVGAL-----------RQGIKIHA 472
YV +L Y+ G R+G+ +H
Sbjct: 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 5e-40
Identities = 102/373 (27%), Positives = 173/373 (46%), Gaps = 29/373 (7%)
Query: 64 KRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRC 123
+ +H +V +G V L+ Y +LG + F + ++ +W +MIS Y +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 124 GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFV 180
G +A++ Y + PD T VL AC L D G K+H + G V V
Sbjct: 368 GLPDKALET-YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426
Query: 181 AASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 240
A +L+ MY + + A ++F ++P +D SW ++I+G + EAL +M L +
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485
Query: 241 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 300
+ +T+ + L CAR ++ G IH ++++ G+ F+ F+ N L+++Y + G M +A
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545
Query: 301 VFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLND 360
F+ E+DVVSWN ++ Y A F M ++G+ PD +T +SL
Sbjct: 546 QFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-------- 596
Query: 361 CRNSRSVHGFIMRRGWF----MED--VIIGN-----AVVDMYAKLGIINSACAVFEGLPV 409
C SRS ++ +G ME+ I N VVD+ + G + A +P+
Sbjct: 597 CACSRSG---MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653
Query: 410 K-DVISWNTLITG 421
D W L+
Sbjct: 654 TPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-22
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 23/132 (17%)
Query: 686 PGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDE- 744
PG E +G+ +HP L ++K G VP+ + DV+ +E
Sbjct: 1 PGCVWSEGK----KTLSGDGSHPT------SKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 745 -----KEHILTSHSERLAIAFGIISSPPKSPIQIFKNL-RVCGDCHNWTKFISQITEREI 798
K +L SH+E+ A+A+G++ +I K L R+CGDCH + ++I++ T REI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 799 IVRDSNRFHHFK 810
IVRD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-15
Identities = 75/282 (26%), Positives = 122/282 (43%), Gaps = 57/282 (20%)
Query: 531 DKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 590
D AL R + + G++ D + +L++ C+ SG V FH M G++ ++ +G
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGA 512
Query: 591 MVDLFGRAGHLGMA---HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEV- 646
++D RAG + A + +++ V+PD ++ AL+ AC + GAV DR F+V
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG-----QSGAV--DRAFDVL 565
Query: 647 ----------DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNN- 695
D +++ LM AN G+ + EV + + +K TP +I VN+
Sbjct: 566 AEMKAETHPIDPDHITVGALMKAC-ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 696 --KVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFV--LQDVEEDEKEHILTS 751
K D + IYD+ MK G PD+ F L DV
Sbjct: 625 SQKGDWDFA--------LSIYDD-------MKKKGVKPDEVFFSALVDV---------AG 660
Query: 752 HSERLAIAFGIISSPPKSPIQI----FKNLR-VCGDCHNWTK 788
H+ L AF I+ K I++ + +L C + NW K
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 74/310 (23%), Positives = 115/310 (37%), Gaps = 54/310 (17%)
Query: 333 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392
F M AG++ ++ T +L A+ + +G IMR D ++ NA++
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG-IMRSKNVKPDRVVFNALISACG 553
Query: 393 KLGIINSACAVF-----EGLPVK-DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP 446
+ G ++ A V E P+ D I+ L+ A G A EV+QM+ E N I
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN-IKG 612
Query: 447 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506
Y + + S G + I+ + K + D + LVD+ G G +D A +
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 507 YQVPRSSSVP------------------W----------------------NAIIS--CH 524
Q R + W NA+I+ C
Sbjct: 673 -QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 525 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH 584
G Q KAL +M G+ P+ IT+ LL A G +E+ GIKP+
Sbjct: 732 G--NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPN 788
Query: 585 LKHYGCMVDL 594
L C+ L
Sbjct: 789 LVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 460
DV+++NTLI GY + G EA+++F M++ I PN TY ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561
V +N +I + G+ ++AL F +M G++P+ T+ L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 208 DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 256
D ++N +I GYC+ G EAL + +EM+ G+ + T + ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-07
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 211 SWNAMISGYCQSGNAVEALDILDEMRLEGV 240
++N++ISGYC++G EAL++ EM+ +GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 211 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMD 243
++N +I G C++G EAL++ EM+ G+ D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 413 ISWNTLITGYAQNGLASEAIEVFQMMEECN 442
+++N+LI+GY + G EA+E+F+ M+E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 62/305 (20%), Positives = 125/305 (40%), Gaps = 51/305 (16%)
Query: 212 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDP--ITVASILPVCARSDNILSGLLIHLY 269
+NA+IS QSG A D+L EM+ E +DP ITV +++ CA + + ++
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 270 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDV----VSWNSIIAAYEQSND 325
I ++ ++ V +N ++ G AL ++D M ++ V V +++++ + D
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 326 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGN 385
A ++ GI+ ++ SL C N+++ W
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGA------CSNAKN---------W--------- 700
Query: 386 AVVDMYAKLGIINSACAVFEGL---PVKDVIS-WNTLITGYAQNGLASEAIEVFQMMEEC 441
A ++E + ++ +S N LIT + +A+EV M+
Sbjct: 701 ------------KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
Query: 442 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-GRID 500
+ PN TY +L A G+ + ++ ++ + ++ + C+ + C R +
Sbjct: 749 G-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL---CLRRFE 804
Query: 501 DAMSL 505
A +L
Sbjct: 805 KACAL 809
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 411 DVISWNTLITGYAQNGLASEAIEVFQMME 439
DV+++NTLI G + G EA+E+ ME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 54/256 (21%)
Query: 386 AVVDMYAKLGIINSACAVFEGLPVKDV----ISWNTLITGYAQNGLASEAIEVF-QMMEE 440
A++D A+ G + A + + K+V + +N LI+ Q+G A +V +M E
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 441 CNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 500
+ I+P+ T GAL +K C G++D
Sbjct: 572 THPIDPDHITV----------GAL----------MKACA---------------NAGQVD 596
Query: 501 DAMSLFYQVPRSSSVP-----WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 555
A + YQ+ ++ + ++ G D AL+ + M +GV+PD + F +L
Sbjct: 597 RAKEV-YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 556 LTACSHSGLVSEGQRYFHMMQE--EFGIKPHLKHYGCMVDLFGRAGHLGMA---HNFIQN 610
+ H+G + + F ++Q+ + GIK Y ++ A + A + I++
Sbjct: 656 VDVAGHAGDLDKA---FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 611 MPVRPDASIWGALLGA 626
+ +RP S AL+ A
Sbjct: 713 IKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 6e-05
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 283 NNLINMYAKFGMMRHALRVFDQMMER----DVVSWNSIIAAY 320
N LI+ Y K G + AL++F++M +R +V +++ +I
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 6e-05
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 109 NVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTF 149
+V T+N++I Y + G++ EA+ + G++P+ YT+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALK-LFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 57/261 (21%), Positives = 119/261 (45%), Gaps = 20/261 (7%)
Query: 113 WNSMISVYVRCGRLSEAVDCFYQFTL-TSGLRPDFYTFPPVLKACRNL--VDGKK----- 164
+N++IS + G + A D + T + PD T ++KAC N VD K
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 165 IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP----VRDSGSWNAMISGYC 220
IH +K G +V+ A ++ + G + A ++DDM D ++A++
Sbjct: 605 IHEYNIK-GTP-EVYTIA--VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 221 QSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 280
+G+ +A +IL + R +G+ + ++ +S++ C+ + N L ++ I L +
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720
Query: 281 VSNNLINMYAKFGMMRHALRVFDQM----MERDVVSWNSIIAAYEQSNDPITAHGFFTTM 336
N LI + + AL V +M + + ++++ ++ A E+ +D +
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780
Query: 337 QQAGIQPDLLTLVSLTSIVAQ 357
++ GI+P+L+ +T + +
Sbjct: 781 KEDGIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548
+N +I G+ ++AL F++M + G+ PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 309 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT 347
DVV++N++I Y + A F M++ GI+P++ T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 177 DVFVAASLLHMYCRFGLANVARKLFDDMPVR----DSGSWNAMISGYCQ 221
DV +L+ YC+ G A KLF++M R + +++ +I G C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 211 SWNAMISGYCQSGNAVEALDILDEMR 236
++N +I G C++G EA+++LDEM
Sbjct: 9 TYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 283 NNLINMYAKFGMMRHALRVFDQMMERDV 310
N+LI+ Y K G + AL +F +M E+ V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGV 545
V +N++IS + G+ ++AL F++M ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 447
+++NTLI G + G EA+E+F+ M+E I P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG-IEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 111 YTWNSMISVYVRCGRLSEAVDCF 133
T+NS+IS Y + G+L EA++ F
Sbjct: 1 VTYNSLISGYCKAGKLEEALELF 23
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 111 YTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPD 145
T+N++I + GR+ EA++ F + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 283 NNLINMYAKFGMMRHALRVFDQMMERDVV 311
N LI+ K G + AL +F +M ER +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.34 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.32 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.31 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.29 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.1 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.1 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.07 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.06 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.96 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.96 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.95 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.92 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.91 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.88 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.81 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.72 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.72 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.57 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.56 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.55 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.44 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.43 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.34 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.32 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.21 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.2 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.18 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.92 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.89 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.86 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.86 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.83 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.79 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.7 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.63 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.62 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.61 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.55 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.52 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.5 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.29 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.23 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.18 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.06 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.99 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.95 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.91 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.88 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.85 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.75 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.48 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.47 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.38 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.31 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.29 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.14 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.1 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.08 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.0 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.9 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.9 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.72 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.6 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.41 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.28 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.2 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.02 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.98 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.96 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.83 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.28 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.04 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.96 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.87 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.82 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.78 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.21 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.14 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.4 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.95 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.73 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.59 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.92 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.84 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.34 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.98 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.86 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 89.73 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.02 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 88.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.91 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.54 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.34 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.27 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.88 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.8 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.38 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.66 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.21 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.56 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.02 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.92 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.69 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 83.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.6 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 82.52 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.13 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.89 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.65 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 80.14 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-150 Score=1345.22 Aligned_cols=772 Identities=40% Similarity=0.735 Sum_probs=760.1
Q ss_pred cCCCCCcccHHHHHHhhc---ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHH
Q 003439 41 LENESREIDFDDLFQSCT---KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMI 117 (820)
Q Consensus 41 ~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 117 (820)
.+..|+..+|..++++|. .+..+.++|+.+.+.|..+++.++|+|+++|+++|+++.|.++|++|++||+++||++|
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 356789999999999997 78889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCCh
Q 003439 118 SVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 194 (820)
Q Consensus 118 ~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 194 (820)
.+|++.|++++|+++|++ |...|+.||.+||+++|++|++.++ +.++|..+++.|+.||+.++|+||++|+++|++
T Consensus 160 ~~~~~~g~~~~A~~~f~~-M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHhCCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 999999999999999999 8899999999999999999998877 999999999999999999999999999999999
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhC
Q 003439 195 NVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHG 274 (820)
Q Consensus 195 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (820)
++|+++|++|+.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|..+.+.|
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003439 275 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSI 354 (820)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 354 (820)
+.||..+||+||.+|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHH
Q 003439 355 VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV 434 (820)
Q Consensus 355 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 434 (820)
|++.|+++.|.++|+.+.+.| +.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 003439 435 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS 514 (820)
Q Consensus 435 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 514 (820)
|++|.. +++||..||+++|.+|++.|+++.++++|..+.+.|+.++..++|+||++|+|+|++++|.++|+++ .+|+
T Consensus 478 f~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~ 554 (857)
T PLN03077 478 FRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDV 554 (857)
T ss_pred HHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCCh
Confidence 999975 5999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 594 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 594 (820)
++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHH
Q 003439 595 FGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
|+|+|++++|.+++++|+++||..+|++|+++|..+|+.+.|+.+.+++++++|++++.|+.|+++|+..|+|++|.+++
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCccCCCcccccCchhhhhhhccccch
Q 003439 675 SLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSE 754 (820)
Q Consensus 675 ~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hs~ 754 (820)
+.|+++|++|+||+||||+++++|.|.+||.+||+.++||..|+++.++|++.||+||+..++ |++|++||+.|++|||
T Consensus 715 ~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse 793 (857)
T PLN03077 715 KTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSE 793 (857)
T ss_pred HHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccH
Confidence 999999999999999999999999999999999999999999999999999999999999988 5588899999999999
Q ss_pred hHHHHhhhccCCCCCceEEeecccccCCchhHHHHHhhhhCceEEEecCCccccccCCcCCCCC
Q 003439 755 RLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGD 818 (820)
Q Consensus 755 ~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~ 818 (820)
|||+|||||+||||+||||+||||||+|||+++|||||+++|||||||++|||||+||+|||||
T Consensus 794 ~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 794 RLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-126 Score=1110.53 Aligned_cols=613 Identities=35% Similarity=0.673 Sum_probs=606.0
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHH
Q 003439 206 VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN 284 (820)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (820)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999998765 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhh
Q 003439 285 LINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 364 (820)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 364 (820)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCC
Q 003439 365 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEI 444 (820)
Q Consensus 365 ~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~ 444 (820)
+++|..+.+.| +.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+ .|+
T Consensus 244 ~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGV 321 (697)
T ss_pred HHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHH
Q 003439 445 NPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 524 (820)
Q Consensus 445 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 524 (820)
.||..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++||++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHH
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA 604 (820)
+++|+.++|+++|++|.+.|+.||.+||+.++++|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCc
Q 003439 605 HNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 684 (820)
Q Consensus 605 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 684 (820)
.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCccCCCcccccCchhhhhhhccccchhHHHHhhhcc
Q 003439 685 TPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 764 (820)
Q Consensus 685 ~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hs~~la~~~~~~~ 764 (820)
.||+|||++++.+|.|.+||.+||+.++||.++.++..+|++.||.||+.+++||+++++|++.|++||||||+|||||+
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~ 641 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLIN 641 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeecccccCCchhHHHHHhhhhCceEEEecCCccccccCCcCCCCCCC
Q 003439 765 SPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICSCGDYW 820 (820)
Q Consensus 765 ~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w 820 (820)
+|||+||||+||||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus 642 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 642 TSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-84 Score=777.04 Aligned_cols=679 Identities=27% Similarity=0.430 Sum_probs=604.7
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHH
Q 003439 106 SYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 182 (820)
Q Consensus 106 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 182 (820)
+.++..++|.++.+|++.|++++|+.+|++ |...|+.|+..+|..++++|.+.+. |.++|..+.+.|..+++.++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~-m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLES-MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 356778899999999999999999999999 9999999999999999999988776 999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHH
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 262 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (820)
+||++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCC
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 342 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 342 (820)
+.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003439 343 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 422 (820)
Q Consensus 343 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 422 (820)
||..||++++.+|+..|+.+.|+++|..+.+.| +.||..++|+|+++|+++|++++|.++|++|..+|+++||+||.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 423 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 423 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
++.|++++|+++|++|.+ .|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|
T Consensus 365 ~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 365 EKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 503 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 503 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.++.+|++.|.++++.+++..+.+. |+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999986 59999999999999999999999999999999865 999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHhHHHH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNI 660 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~ 660 (820)
++..++++|+++|+++|++++|.++|+++ +||.++|++|+.+|.++|+.++|.++|++|.+ +.| |..+|..+...
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999987 557 67778889999
Q ss_pred hhhcCCcchHHHHHHHHH-hCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHH---HHHHHHHHHHhCCCccCCCcc
Q 003439 661 YANVGKWEGVDEVRSLAR-DRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYD---ELRNLTAKMKSLGYVPDKSFV 736 (820)
Q Consensus 661 y~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~---~l~~l~~~m~~~g~~pd~~~~ 736 (820)
|.+.|++++|.++|+.|. +.|+.|+... .-..-..+. .+++..+.+++++..||...+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~------------------y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKH------------------YACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHH------------------HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 999999999999999999 6787664310 001111111 234455555666789997643
Q ss_pred cccCchhhhhhhcccc---chhHHHHhhhccCCC--CCceEEeecc-cccCCchhHHHHHhhhhCceEEEec-------C
Q 003439 737 LQDVEEDEKEHILTSH---SERLAIAFGIISSPP--KSPIQIFKNL-RVCGDCHNWTKFISQITEREIIVRD-------S 803 (820)
Q Consensus 737 ~~~~~~~~~~~~~~~h---s~~la~~~~~~~~~~--~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd-------~ 803 (820)
-.-+.-- +. ... .|+.|. -++...| ......+-|+ --.++...+.|....+..+.+-.-. .
T Consensus 661 ~aLl~ac-~~---~~~~e~~e~~a~--~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 661 GALLNAC-RI---HRHVELGELAAQ--HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred HHHHHHH-HH---cCChHHHHHHHH--HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 2211110 00 000 111111 1222222 2233334454 3467888888888888777543211 3
Q ss_pred CccccccCCcCCC
Q 003439 804 NRFHHFKDGICSC 816 (820)
Q Consensus 804 ~~~h~f~~g~csc 816 (820)
+..|-|..|--|.
T Consensus 735 ~~~~~f~~~d~~h 747 (857)
T PLN03077 735 GKVHAFLTDDESH 747 (857)
T ss_pred CEEEEEecCCCCC
Confidence 6788887765443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=640.92 Aligned_cols=472 Identities=28% Similarity=0.493 Sum_probs=455.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhC-CCCCCccccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHH
Q 003439 107 YRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTS-GLRPDFYTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAA 182 (820)
Q Consensus 107 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 182 (820)
.++.++|+++|.+|.+.|++++|+++|+. |... ++.||..||+++|++|++.+. +.++|..|.+.|+.||+.++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~-m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEI-LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 45788999999999999999999999999 7665 488999999999999998887 899999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHH
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 262 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (820)
.|+++|+++|++++|+++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCC
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 342 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 342 (820)
+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003439 343 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGY 422 (820)
Q Consensus 343 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 422 (820)
||..||++++.+|++.|.++.|+++|+.+.+.| +++|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 423 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 423 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
++.|+.++|+++|++|.+ .|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|++|++.|++++
T Consensus 402 ~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999999 99999999999999999999999999999999976 6999999999999999999999999
Q ss_pred HHHHHhhCC-CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh
Q 003439 502 AMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF 579 (820)
Q Consensus 502 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 579 (820)
|.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.|++.|++.|++++|.++++.|.++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~- 557 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK- 557 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 999999998 78999999999999999999999999999976 6675 569999999999999999999999999876
Q ss_pred CCCCC
Q 003439 580 GIKPH 584 (820)
Q Consensus 580 g~~p~ 584 (820)
|+++.
T Consensus 558 g~~k~ 562 (697)
T PLN03081 558 GLSMH 562 (697)
T ss_pred CCccC
Confidence 87643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-69 Score=630.42 Aligned_cols=523 Identities=16% Similarity=0.230 Sum_probs=476.5
Q ss_pred CCCCChhhhHHHHHHHHccCChHHHHHHhcccCCCCcc-----hHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccc
Q 003439 74 GKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVY-----TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYT 148 (820)
Q Consensus 74 g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t 148 (820)
...++...+..+++.|+++|++++|.++|+.|+.++.+ .++.++.+|.+.|..++|+.+|+. |.. ||..|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~-M~~----pd~~T 439 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL-IRN----PTLST 439 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH-cCC----CCHHH
Confidence 34577888999999999999999999999999876654 456677889999999999999998 754 99999
Q ss_pred cHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC----CCCcccHHHHHHHHHh
Q 003439 149 FPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP----VRDSGSWNAMISGYCQ 221 (820)
Q Consensus 149 ~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 221 (820)
|+.+|++|++.++ |.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999888 99999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHccCCHHHHH
Q 003439 222 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVK--HGLEFNLFVSNNLINMYAKFGMMRHAL 299 (820)
Q Consensus 222 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (820)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 679999999999999999999999999
Q ss_pred HHHhccCC----CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhC
Q 003439 300 RVFDQMME----RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 375 (820)
Q Consensus 300 ~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 375 (820)
++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999976 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccH
Q 003439 376 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP----VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY 451 (820)
Q Consensus 376 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 451 (820)
+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.. .|+.||..||
T Consensus 680 -~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty 757 (1060)
T PLN03218 680 -IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITY 757 (1060)
T ss_pred -CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHH
Confidence 99999999999999999999999999999995 68999999999999999999999999999999 9999999999
Q ss_pred hhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCCCCCccccchHHHHHHhc
Q 003439 452 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG----KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH 527 (820)
Q Consensus 452 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 527 (820)
++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. +++...++...|+.+...+...|
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w---------- 827 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW---------- 827 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch----------
Confidence 9999999999999999999999999999999999999998743 34444444444443333333334
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 528 GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 528 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
.++|+.+|++|++.|+.||.+||+.++.++...+..+.+..+++.|... +..|+..+|++||+++++. .++|..+
T Consensus 828 --~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 828 --TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 4579999999999999999999999998777888888888888777644 7788889999999988542 4789999
Q ss_pred HHhC---CCCCCHH
Q 003439 608 IQNM---PVRPDAS 618 (820)
Q Consensus 608 ~~~m---~~~p~~~ 618 (820)
+++| ++.|+..
T Consensus 903 ~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 903 LEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHcCCCCCcc
Confidence 9998 5667654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=603.31 Aligned_cols=502 Identities=19% Similarity=0.249 Sum_probs=466.2
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCccc-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHh
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGS-----WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS 249 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 249 (820)
.++...|..+++.|+++|++++|+++|++|+.++.+. ++.++.+|.+.|..++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 5678889999999999999999999999999776654 45667789999999999999999974 99999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccC----CCCchHHHHHHHHHHhCCC
Q 003439 250 ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM----ERDVVSWNSIIAAYEQSND 325 (820)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~ 325 (820)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999997 4899999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH--hCCcCcchhHHhHHHHHHHhcCCHHHHHHH
Q 003439 326 PITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR--RGWFMEDVIIGNAVVDMYAKLGIINSACAV 403 (820)
Q Consensus 326 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 403 (820)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+ .| +.||..+|++||++|+++|++++|.++
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 56 899999999999999999999999999
Q ss_pred HhcCCCC----CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCC
Q 003439 404 FEGLPVK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCL 479 (820)
Q Consensus 404 f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 479 (820)
|+.|.+. +..+||++|.+|++.|++++|+++|++|.+ .|+.||..||++++.+|++.|++++|.++++.|.+.|+
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999754 669999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003439 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 555 (820)
Q Consensus 480 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 555 (820)
.|+..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH----HcC-------------------CHHHHHHHHHhC-
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG----RAG-------------------HLGMAHNFIQNM- 611 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~----~~g-------------------~~~eA~~~~~~m- 611 (820)
+.+|++.|++++|.++|..|.+. |+.||..+|++|++++. +++ ..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999866 99999999999998743 333 246799999999
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCcchHHhHHHHhhhcCCc-chHHHHHHHHHhCCCCcCC
Q 003439 612 --PVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANVGKW-EGVDEVRSLARDRGLKKTP 686 (820)
Q Consensus 612 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~~~~~~~~ 686 (820)
++.||..+|++++.++...+..+.+..+++.+.. -.+.+..+|..|.+.+ |++ ++|..++++|.+.|+.|+.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 6899999999999888788888888888876542 3455778889998876 444 5899999999999997765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=326.53 Aligned_cols=605 Identities=12% Similarity=0.051 Sum_probs=362.9
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC--CC-cchHHHHHHHHHhCCCchHHHHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY--RN-VYTWNSMISVYVRCGRLSEAVDCFYQ 135 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 135 (820)
....+...+..+.+..... ..........+...|++++|...|+.+.+ |+ ...+..+...+...|++++|...|.+
T Consensus 242 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 320 (899)
T TIGR02917 242 EFEEAEKHADALLKKAPNS-PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320 (899)
T ss_pred CHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6677777776666554322 22222233344566777777777766532 22 23344455566677777777777776
Q ss_pred HhhhCCCCCCc-cccHHHHHhhcCCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCC---CC
Q 003439 136 FTLTSGLRPDF-YTFPPVLKACRNLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RD 208 (820)
Q Consensus 136 ~m~~~~~~p~~-~t~~~ll~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~ 208 (820)
.+.. .|+. ..+..+.......++ +.+.+..+.+.. +.+..+++.+...|.+.|++++|.+.|+++.. .+
T Consensus 321 ~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 396 (899)
T TIGR02917 321 ILKY---APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396 (899)
T ss_pred HHHh---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 2222 2322 223333333333333 555555555443 34566667777777777777777777776542 23
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 288 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (820)
...|..+...+...|++++|++.|+++.+.... +......++..+...|+.++|..++..+.+.. +.+..++..+...
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 474 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAI 474 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHH
Confidence 445666666677777777777777776654322 12333445556666677777777766665543 3455566666667
Q ss_pred HHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhh
Q 003439 289 YAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSR 365 (820)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 365 (820)
|...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.+.+.
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777766533 244456666666666777777777777666542 224445566666666666666676
Q ss_pred hHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcC
Q 003439 366 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECN 442 (820)
Q Consensus 366 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 442 (820)
..+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+
T Consensus 554 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 629 (899)
T TIGR02917 554 AWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA-- 629 (899)
T ss_pred HHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 6666666554 44555566666666677777777666666542 2455666666666666777777777666655
Q ss_pred CCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccc
Q 003439 443 EINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 518 (820)
Q Consensus 443 g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 518 (820)
..| +...+..+...+...|++++|..+++.+.+.. +.+...+..++..+.+.|++++|.++++.+. +.+...|.
T Consensus 630 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 630 -LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred -hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 223 33345555566666666777766666666543 2245566666666666666666666666665 22334455
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 598 (820)
.+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 6666666666666666666666663 354455556666666666666666666666542 233455666666666666
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 599 GHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
|+.++|.+.|+++ .. +++..+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.+++++
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665 22 2345566666666666666 5566666666666666666666666666666666666666666
Q ss_pred HHhCCC
Q 003439 677 ARDRGL 682 (820)
Q Consensus 677 m~~~~~ 682 (820)
+.+.+.
T Consensus 863 a~~~~~ 868 (899)
T TIGR02917 863 AVNIAP 868 (899)
T ss_pred HHhhCC
Confidence 665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=322.66 Aligned_cols=606 Identities=11% Similarity=0.051 Sum_probs=476.3
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCCchHHHHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY---RNVYTWNSMISVYVRCGRLSEAVDCFYQ 135 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 135 (820)
+...+..+...+.... ..+...+..+...+.+.|+++.|...|+.... .+..+|..++..+...|++++|...++.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666666665555432 23445555666666666666666666665421 2445556666666666666666666655
Q ss_pred HhhhCC--------------------------------CCCCccccHHHH-HhhcCCcc---hHHHHHHHHHhCCCCcHH
Q 003439 136 FTLTSG--------------------------------LRPDFYTFPPVL-KACRNLVD---GKKIHCSVLKLGFEWDVF 179 (820)
Q Consensus 136 ~m~~~~--------------------------------~~p~~~t~~~ll-~~~~~~~~---~~~~~~~~~~~g~~~~~~ 179 (820)
+.+.. ..|+.......+ ..+...++ +...+..+++.. +.+..
T Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 330 (899)
T TIGR02917 253 -LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQ 330 (899)
T ss_pred -HHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 32211 112111000000 11112222 555555555543 34566
Q ss_pred HHHHHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhc
Q 003439 180 VAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 256 (820)
Q Consensus 180 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (820)
.+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 777888888899999999998887753 355678888899999999999999999987653 2245566777778888
Q ss_pred CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHH
Q 003439 257 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFF 333 (820)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~ 333 (820)
.|+.++|...+..+.+... ........++..|.+.|+.++|..+++.+.. .+..+|+.+...|...|++++|.+.|
T Consensus 410 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999887653 2345666788899999999999999998865 46778999999999999999999999
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---C
Q 003439 334 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---K 410 (820)
Q Consensus 334 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 410 (820)
+++.+.. +.+...+..+...+...|+.+.|.+.+..+.+.+ +.+..++..+...|.+.|+.++|...|+++.. .
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9998753 2344567778888999999999999999999875 66788999999999999999999999998743 3
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
+...+..++..|.+.|++++|+.+++++.. ..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 567788899999999999999999999976 234456778889999999999999999999998865 34667888999
Q ss_pred HHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 567 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 567 (820)
..|.+.|++++|..+|+++. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999876 4556789999999999999999999999999864 4456788888899999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 568 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 568 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
|.+.|+.+.. ..|+..++..++.+|.+.|+.++|.+.++++ . .+.+..++..+...|...|+.++|+..++++++
T Consensus 722 A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999884 4576688888999999999999999999887 3 334567899999999999999999999999999
Q ss_pred cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 646 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 646 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|+++..+..++++|...|+ ++|..+++++.+.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999 8899999998775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=255.33 Aligned_cols=106 Identities=64% Similarity=1.027 Sum_probs=98.0
Q ss_pred ceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCccCCCcccccCchhhh--------hhhccccchhHHH
Q 003439 687 GWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYVPDKSFVLQDVEEDEK--------EHILTSHSERLAI 758 (820)
Q Consensus 687 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~hs~~la~ 758 (820)
|+||+++ |.|.+||.+||+. ++..++...||.|++..++|+++++++ +.++++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899877 9999999999987 556677888999999999998887765 6689999999999
Q ss_pred HhhhccCCCCCceEEeecc-cccCCchhHHHHHhhhhCceEEEecCCcccccc
Q 003439 759 AFGIISSPPKSPIQIFKNL-RVCGDCHNWTKFISQITEREIIVRDSNRFHHFK 810 (820)
Q Consensus 759 ~~~~~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~ 810 (820)
||||+++ ||+||+ |||+|||+|+|+||+++||+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-22 Score=247.36 Aligned_cols=601 Identities=12% Similarity=0.072 Sum_probs=440.0
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC--CCc-chH----------------HHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY--RNV-YTW----------------NSMISV 119 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~-~~~----------------~~li~~ 119 (820)
+.+.+++....+...- ..|+.++..+...+.+.|+.++|.+.++...+ |+. ..+ ..+...
T Consensus 43 ~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 43 REDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred ChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 6777777777665432 23567778888889999999999999998743 332 221 233446
Q ss_pred HHhCCCchHHHHHHHHHhhhCCCCCCccccHH-HHHhhc-CCcc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCCh
Q 003439 120 YVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPP-VLKACR-NLVD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLA 194 (820)
Q Consensus 120 ~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~-ll~~~~-~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 194 (820)
+.+.|++++|++.|++ ... +-+|+ ..... ...... ..+. |.+.++.+++.. +.++..+..+...+...|+.
T Consensus 122 l~~~g~~~eA~~~~~~-~l~-~~p~~-~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 122 LATTGRTEEALASYDK-LFN-GAPPE-LDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHhCCCHHHHHHHHHH-Hcc-CCCCC-hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 8899999999999998 432 22333 22111 112221 1222 778888887774 55677888999999999999
Q ss_pred hHHHHHhccCCCCCc------ccH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH
Q 003439 195 NVARKLFDDMPVRDS------GSW-----------------NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 251 (820)
Q Consensus 195 ~~A~~~f~~m~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 251 (820)
++|.+.|+++..... ..| ...+..+-.....+.|...+.++......|+... ...-
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 999999998753211 111 1111112222234455566655544333333222 1223
Q ss_pred HhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCc---hHHHHH----------
Q 003439 252 PVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDV---VSWNSI---------- 316 (820)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~---~~~~~l---------- 316 (820)
.++...|++++|...++..++.. +.+..++..|...|.+.|+.++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 45667899999999999999875 34778899999999999999999999998754 321 223222
Q ss_pred --HHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhc
Q 003439 317 --IAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 394 (820)
Q Consensus 317 --i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~ 394 (820)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|+.+.|.+.+..+++.. +.+...+..+...|. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-h
Confidence 345678999999999999998863 2244566778889999999999999999999875 555667777777775 4
Q ss_pred CCHHHHHHHHhcCCCCC------------chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhcc
Q 003439 395 GIINSACAVFEGLPVKD------------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHV 461 (820)
Q Consensus 395 g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~ 461 (820)
++.++|...++.+.... ...+..+...+...|++++|++.|++..+ ..|+. ..+..+...+.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---LDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 67899999998876432 22345566778899999999999999987 66754 4556777889999
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-------------ccchHHHHHHhcC
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-------------PWNAIISCHGIHG 528 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~~~g 528 (820)
|++++|...++.+++... .+...+..+...+.+.|+.++|...++.+...... .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999999999987543 24444555556678899999999999988733210 1224566788999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
+.++|+++++. .+++...+..+...+.+.|++++|++.|+...+. .| +...+..++.+|...|++++|++.
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999872 2345557778888999999999999999998853 45 567888999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 608 IQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 608 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
++.. ...|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|...++++..
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 34554 557888888999999999999999999998776543 455679999999999999999988853
Q ss_pred -CCC
Q 003439 680 -RGL 682 (820)
Q Consensus 680 -~~~ 682 (820)
.|+
T Consensus 740 ~~~~ 743 (1157)
T PRK11447 740 ASGI 743 (1157)
T ss_pred hcCC
Confidence 344
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-22 Score=247.59 Aligned_cols=581 Identities=11% Similarity=0.043 Sum_probs=420.2
Q ss_pred HHHHHHccCChHHHHHHhcccC--C-CCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHH----------
Q 003439 85 LVNFYANLGDLSFSRHTFDHIS--Y-RNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPP---------- 151 (820)
Q Consensus 85 ll~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~---------- 151 (820)
.++.+...++.+.|++.++++. . .|...+..++..+.+.|+.++|.+.+++ ..+ +.|+...+..
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~-l~~--~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDR-LSQ--LAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHh--hCCCChHHHHHHHHHHhcCC
Confidence 3556677899999999988763 2 3567788899999999999999999998 333 3455443321
Q ss_pred -----H--HHhhcCCcc---hHHHHHHHHHhCCCCcHHHH-HHHHHHhhcCCChhHHHHHhccCCC--C-CcccHHHHHH
Q 003439 152 -----V--LKACRNLVD---GKKIHCSVLKLGFEWDVFVA-ASLLHMYCRFGLANVARKLFDDMPV--R-DSGSWNAMIS 217 (820)
Q Consensus 152 -----l--l~~~~~~~~---~~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 217 (820)
+ -+.+...+. |.+.+..+.+.. +++.... ..+.......|+.++|++.|+++.. | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1 112333333 777777776543 3333221 1112222345899999999998874 3 4557888889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC----------------Ch---HHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCcc
Q 003439 218 GYCQSGNAVEALDILDEMRLEGVSM----------------DP---ITVASILPVCARSDNILSGLLIHLYIVKHGLEFN 278 (820)
Q Consensus 218 ~~~~~g~~~~A~~l~~~m~~~g~~p----------------~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (820)
.+.+.|+.++|+..++++.+..... +. ..+...+..+-.......+...+....+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999986532110 00 0111112222222234445555554444333333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhccCC--C-CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCc-chHH-----
Q 003439 279 LFVSNNLINMYAKFGMMRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL-LTLV----- 349 (820)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~----- 349 (820)
.. ...+...+...|++++|+..|++..+ | +...+..|...|.+.|++++|+..|++..+....... ..+.
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 22345667889999999999998755 3 6778999999999999999999999998875422211 1111
Q ss_pred -------HHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHH
Q 003439 350 -------SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLI 419 (820)
Q Consensus 350 -------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li 419 (820)
.....+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++... .+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12345678899999999999999875 56777888899999999999999999998763 3455677777
Q ss_pred HHHHHcCChHHHHHHHHhhhhcCCCCC--------CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003439 420 TGYAQNGLASEAIEVFQMMEECNEINP--------NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 491 (820)
Q Consensus 420 ~~~~~~g~~~~A~~l~~~m~~~~g~~p--------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 491 (820)
..|. .++.++|+.+++.+.. ....+ ....+......+...|++++|.+.++.+++... .+...+..+..
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~-~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~ 503 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSA-SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQ 503 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCH-HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 7774 4678999999887654 11000 011234455667889999999999999988753 35677888999
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---------HHHHHHHHH
Q 003439 492 MYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI---------TFVSLLTAC 559 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~ 559 (820)
.|.+.|++++|...|+++. +.+...+..+...+...|+.++|+..++++......++.. .+..+...+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999875 3344455566666778999999999998865432222221 233456778
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|+.++|.++++. .+++...+..+.+.|.+.|++++|++.+++. ...|+ ...+..++..+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999998861 2345567788999999999999999999987 45564 569999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
..++++.+..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999988754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-20 Score=215.47 Aligned_cols=560 Identities=10% Similarity=0.003 Sum_probs=395.4
Q ss_pred ccCChHHHHHHhcccCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHH
Q 003439 91 NLGDLSFSRHTFDHISY--R-NVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHC 167 (820)
Q Consensus 91 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 167 (820)
..|++++|...|+...+ | +..++..+...|.+.|+.++|+..+++ .....|+...|..++....+...+..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~k---Av~ldP~n~~~~~~La~i~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLED---QLKRHPGDARLERSLAAIPVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---HHhcCcccHHHHHHHHHhccChhHHHHHH
Confidence 44999999999987643 3 466788899999999999999999988 33456777777766655644444778888
Q ss_pred HHHHhCCCCcHHHHHHHHHH--------hhcCCChhHHHHHhccCCCCC--cc-cHHHHHHHHHhCCChhHHHHHHHHHH
Q 003439 168 SVLKLGFEWDVFVAASLLHM--------YCRFGLANVARKLFDDMPVRD--SG-SWNAMISGYCQSGNAVEALDILDEMR 236 (820)
Q Consensus 168 ~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~m~~~~--~~-~~~~li~~~~~~g~~~~A~~l~~~m~ 236 (820)
.+++.. +.+..++..+... |.+.+...++++ .+...++ .. ..-.+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888775 3445555555555 877777777776 3333343 33 34444899999999999999999999
Q ss_pred HCCCCCChHHHHhHHHhhhc-CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC-----CCc
Q 003439 237 LEGVSMDPITVASILPVCAR-SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME-----RDV 310 (820)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d~ 310 (820)
+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++++++. |+.
T Consensus 210 k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 886443 3334555556666 355 666666442 3446888999999999999999999999998854 222
Q ss_pred hHHHH------------------------------HHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH--hc
Q 003439 311 VSWNS------------------------------IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA--QL 358 (820)
Q Consensus 311 ~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~--~~ 358 (820)
.+|-- ++.-+.++++++.+.++ ....|..... .+.... ..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~r~~~~~~~ 355 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEML--EERYAVSVAT 355 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchHH--HHHHhhcccc
Confidence 22221 23444555555544433 1244444432 222222 23
Q ss_pred CcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC-C-C----chHHHHHHHHHHHcCC---hH
Q 003439 359 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV-K-D----VISWNTLITGYAQNGL---AS 429 (820)
Q Consensus 359 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-~----~~~~~~li~~~~~~g~---~~ 429 (820)
+...++.+....+.+.. +.+....--+.-...+.|+.++|.++|+..-. + + ...-+-++..|...+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 55666666666666652 44566666666667788999999999987654 2 2 2233356666766655 33
Q ss_pred HHHHH----------------------HHhhhhcCCCCCC---cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchh
Q 003439 430 EAIEV----------------------FQMMEECNEINPN---QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 484 (820)
Q Consensus 430 ~A~~l----------------------~~~m~~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 484 (820)
++..+ +.......+..|+ ...+..+..++.. +..++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 33333 2222221223343 3334444444444 88888999777776654 4544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH 561 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 561 (820)
....+...+...|++++|...|+++. .++...+..+...+.+.|+.++|...+++.++. .|+.. .+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence 44444555678999999999999776 344455777788889999999999999999985 45543 33344445566
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
.|++++|...++... .+.|+...+..+..++.+.|+.++|.+.+++. ...|+ ...++.+..++...|+.++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 799999999999887 45778889999999999999999999999987 56665 45888888999999999999999
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-19 Score=211.38 Aligned_cols=598 Identities=10% Similarity=0.008 Sum_probs=419.4
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCC--CCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 003439 59 KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISY--RNVYTWNSMISVYVRCGRLSEAVDCFYQF 136 (820)
Q Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 136 (820)
+...+...+...++.-+.. ..++..|...|.+.|+.++|+..+++... |+-.-|..++..+ +++++|..+|+++
T Consensus 59 d~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l 134 (987)
T PRK09782 59 DEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEEL 134 (987)
T ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHH
Confidence 7778888888887766554 77889999999999999999999988643 4333343434333 8999999999994
Q ss_pred hhhCCCCCCccccHHHH------HhhcCCcchHHHHHHHHHhCCCCcHHHHHHH-HHHhhcCCChhHHHHHhccCCCCC-
Q 003439 137 TLTSGLRPDFYTFPPVL------KACRNLVDGKKIHCSVLKLGFEWDVFVAASL-LHMYCRFGLANVARKLFDDMPVRD- 208 (820)
Q Consensus 137 m~~~~~~p~~~t~~~ll------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~~~- 208 (820)
+....-.++...+.+.+ -.+.+...+.+... .......|+..+.... ...|.+.|++++|++++.++.+.+
T Consensus 135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 44332333333333332 12455555666665 3334444456555555 889999999999999998887432
Q ss_pred --cccHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCC-ccH-----
Q 003439 209 --SGSWNAMISGYCQS-GNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNL----- 279 (820)
Q Consensus 209 --~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~----- 279 (820)
..-+..|-.+|.++ ++ +++..+++. .++-|......+...+.+.|+.++|.+++..+...-.. |+.
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 22355566677773 66 777777553 23356777888888888888888888887765332110 111
Q ss_pred -------------------------HHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHH--HHhCCChhhHHHH
Q 003439 280 -------------------------FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAA--YEQSNDPITAHGF 332 (820)
Q Consensus 280 -------------------------~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~--~~~~g~~~~A~~~ 332 (820)
...-.++..+.+.++.+.|+++.+ ....+.. ..+.. ....+...++...
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHH
Confidence 112234677888888887777744 2222222 12222 2234666677777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH-hCCcCcchhHHhHHHHHHHhcCC---HHHHHHH-----
Q 003439 333 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-RGWFMEDVIIGNAVVDMYAKLGI---INSACAV----- 403 (820)
Q Consensus 333 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~~li~~y~~~g~---~~~A~~~----- 403 (820)
++.|.+.. .-+......+--.....|+.++|.+++..... .+.-..+..+.+-|+..|.+.+. ...|..+
T Consensus 365 ~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 365 ARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 77776541 11333333333445567888888888888766 22122345566678888887766 2223222
Q ss_pred --------------------HhcCC---CC--CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHh
Q 003439 404 --------------------FEGLP---VK--DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 458 (820)
Q Consensus 404 --------------------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 458 (820)
+.... .. +...|..+...+.. ++.++|+..|.+... ..|+......+..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al 519 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQA 519 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHH
Confidence 11111 12 55677777777776 899999998888776 557765544445555
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHH---HHHhcCChHHHHH
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIIS---CHGIHGQGDKALN 535 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~ 535 (820)
...|++++|...++.+... .|+...+..+...+.+.|++++|...|++....+...++.... .....|++++|+.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 7899999999999987664 3444455677788899999999999999887554433333333 3334499999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 536 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 536 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
.+++.++ ..|+...+..+..++.+.|++++|...++.... +.| +...++.+...+...|+.++|++.+++. ..
T Consensus 598 ~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 598 DLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998 578888899999999999999999999999884 456 4567888889999999999999999987 55
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 614 RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 614 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.|+ ...+..+..++...|++++|+..++++++++|++.......+++..+..+++.|.+-++..-..++
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 664 569999999999999999999999999999999999999999999999999999988877665544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-19 Score=185.94 Aligned_cols=451 Identities=14% Similarity=0.146 Sum_probs=357.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHc
Q 003439 212 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 291 (820)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (820)
-..|..-..+.|++++|.+.-...-+.+ ..+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666678888888887655443322 1222233333344445555554444333333332 2345678889999999
Q ss_pred cCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHH-HHHHHHhcCcchhhhhH
Q 003439 292 FGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS-LTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~i 367 (820)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.+...+ +-......|.+++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998866 3567899999999999999999999998876 4576554433 23334457889999998
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCC---chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCC
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD---VISWNTLITGYAQNGLASEAIEVFQMMEECNEI 444 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~ 444 (820)
+..+++.. +.-..+|+.|...+-..|++..|..-|++...-| ...|-.|...|...+.+++|+..+.+... .
T Consensus 207 YlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---l 281 (966)
T KOG4626|consen 207 YLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---L 281 (966)
T ss_pred HHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---c
Confidence 88888765 4556788999999999999999999999876544 45788888999999999999999998876 7
Q ss_pred CCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchH
Q 003439 445 NPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAI 520 (820)
Q Consensus 445 ~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 520 (820)
+|+. +.+..+...|...|.++.|...+++.++.... -...|+.|..++-..|++.+|.+.+.+.. ..-..+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 7864 56677777789999999999999999886422 36789999999999999999999998876 4445668889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~ 598 (820)
...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.. .++|+. ..|+.|...|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999999 78875 589999999999999999999998877 688874 7899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 599 GHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
|+.+.|.+.+.+. .+.|.-. ..+.|...|...|++.+|+..|+.++.++|+.+.+|-.+.-.+--..+|.+-.+.+++
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999887 6778644 8899999999999999999999999999999999999888877777788774444433
Q ss_pred H
Q 003439 677 A 677 (820)
Q Consensus 677 m 677 (820)
+
T Consensus 516 l 516 (966)
T KOG4626|consen 516 L 516 (966)
T ss_pred H
Confidence 3
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-19 Score=183.43 Aligned_cols=413 Identities=11% Similarity=0.130 Sum_probs=333.4
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC---CchHHHHHHHHHHhCCChhhHH
Q 003439 254 CARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAH 330 (820)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 330 (820)
.-+.|++.+|++.-..+-... +.+....-.+-..|....+++.....-....+. -..+|..+...+-..|++++|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence 345678887776544443332 222222223334566666666544333222222 3468999999999999999999
Q ss_pred HHHHHHHHcCCCC-CcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC
Q 003439 331 GFFTTMQQAGIQP-DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV 409 (820)
Q Consensus 331 ~~~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 409 (820)
.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++.+ +....+.+-+-...-..|++++|...+.+..+
T Consensus 137 ~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999874 56 45688999999999999999999999998864 33334455566666778999999988876543
Q ss_pred C---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhH
Q 003439 410 K---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV 485 (820)
Q Consensus 410 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 485 (820)
. =.+.|+.|...+-..|+..+|++.|++..+ +.|+- ..|..+-..|...+.++.|...+..+..... ....+
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a 288 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVA 288 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhh
Confidence 3 357899999999999999999999999877 77763 4677888888888899999888887766432 24566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPR--S-SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH 561 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 561 (820)
+..|...|-..|.+|-|+..+++... | -...||.|..++...|++.+|...|.+.+. +.|+.. ..+.|.+++..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHH
Confidence 77788889999999999999998773 3 345699999999999999999999999999 688864 88999999999
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 638 (820)
.|.+++|..+|.... .+.|. ....+.|...|-.+|++++|..-+++. .++|+.. .++.+.+.|...|+++.|++
T Consensus 367 ~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 999999999998877 45665 467899999999999999999999887 7889865 99999999999999999999
Q ss_pred HHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 639 ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 639 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.+++.++|.-+.++..|+.+|...|+..+|..-++.....
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-17 Score=186.05 Aligned_cols=419 Identities=11% Similarity=0.004 Sum_probs=257.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHc
Q 003439 212 WNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK 291 (820)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (820)
+...-..+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677778888888888887765 34566666666666667777777777776666653 2245556666666777
Q ss_pred cCCHHHHHHHHhccCCC---CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHH
Q 003439 292 FGMMRHALRVFDQMMER---DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 368 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 368 (820)
.|++++|..-|...... +......++.-+.. ..+.....+..+. .|.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~------------------------ 256 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KPE------------------------ 256 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCC------------------------
Confidence 77777666655433211 11111111111111 1111111111111 111
Q ss_pred HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCC---chHHHHHHHHH---HHcCChHHHHHHHHhhhhcC
Q 003439 369 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD---VISWNTLITGY---AQNGLASEAIEVFQMMEECN 442 (820)
Q Consensus 369 ~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~~ 442 (820)
+...+..+.. |........+..-++...+.+ ...+..+...+ ...+++++|++.|++.....
T Consensus 257 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 257 -----------NLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred -----------CCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 1111111111 111000000111011100000 01111111111 12356777777777776511
Q ss_pred CCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccc
Q 003439 443 EINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 518 (820)
Q Consensus 443 g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 518 (820)
...|+. ..+..+...+...|++++|...++.+++... .....+..+...|...|++++|...|++.. +.+...|.
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 233432 3445555556677778888777777766532 234566777778888888888888887665 44566688
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 597 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 597 (820)
.+...|...|++++|+..|++.++ +.|+. ..+..+..++.+.|++++|...|+..... .+.+...++.+..+|..
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 888888899999999999999988 46654 56777888889999999999999988743 22346788889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 598 AGHLGMAHNFIQNM-PVRPDA-------S-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 598 ~g~~~eA~~~~~~m-~~~p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
.|++++|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++|++...+..|+.+|...|+++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 99999999999885 444431 1 12222223444699999999999999999999889999999999999999
Q ss_pred hHHHHHHHHHhC
Q 003439 669 GVDEVRSLARDR 680 (820)
Q Consensus 669 ~A~~~~~~m~~~ 680 (820)
+|.+.+++..+.
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=185.62 Aligned_cols=290 Identities=12% Similarity=0.090 Sum_probs=221.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC---cccHhhHHHHhhccCC
Q 003439 390 MYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN---QGTYVSILPAYSHVGA 463 (820)
Q Consensus 390 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd---~~t~~~ll~a~~~~~~ 463 (820)
.+...|++++|...|+++.+. +..+|..+...+.+.|++++|+.+++.+.. .+..++ ..++..+...+...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 455667777777777776532 345677777778888888888888887766 322221 1345666777777888
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--------ccchHHHHHHhcCChHHHHH
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV--------PWNAIISCHGIHGQGDKALN 535 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~ 535 (820)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+.. .|..+...+.+.|++++|+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888877653 345667888888888888888888888887632221 24556777888999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 536 FFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 536 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
.|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ...++.++.+|.+.|++++|.+.++++
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999884 455 447777888999999999999999998853 343 456788999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh---cCCcchHHHHHHHHHhCCCCcCCc
Q 003439 612 PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN---VGKWEGVDEVRSLARDRGLKKTPG 687 (820)
Q Consensus 612 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~A~~~~~~m~~~~~~~~~~ 687 (820)
...|+...+..++..+.+.|++++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777788999999999999999999999999997664 4444444332 568999999999999999999886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=182.18 Aligned_cols=284 Identities=15% Similarity=0.143 Sum_probs=189.1
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCc--chhHHhHHHHHHHhcC
Q 003439 319 AYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFME--DVIIGNAVVDMYAKLG 395 (820)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~~li~~y~~~g 395 (820)
.+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..++..+++.+...+ ...++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344566666677776666654 222 22333444444444444444444444433220111 1234455555555555
Q ss_pred CHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHH
Q 003439 396 IINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 472 (820)
Q Consensus 396 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 472 (820)
++++|..+|+.+.+ .+..+++.++..+.+.|++++|++.|+.+.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------------- 169 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-------------------------------- 169 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH--------------------------------
Confidence 55555555555543 2344555555555555555555555555544
Q ss_pred HHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003439 473 RVIKNCLCFD----VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV 545 (820)
Q Consensus 473 ~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 545 (820)
.+..+. ...+..+...+.+.|++++|.+.|+++. +.+...|..+...|.+.|++++|+++|+++.+.
T Consensus 170 ----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 170 ----LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred ----hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 222111 1234556777888888888888888776 233446777888999999999999999999985
Q ss_pred CCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003439 546 RPD--HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGA 622 (820)
Q Consensus 546 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ 622 (820)
.|+ ..++..+..++...|++++|.+.++.+.+. .|+...+..++..|.+.|++++|.++++++ ...|+...++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 444 356888999999999999999999998853 677777789999999999999999999876 66799999998
Q ss_pred HHHHHHh---cCChhHHHHHHHHHhc
Q 003439 623 LLGACRI---HGNMELGAVASDRLFE 645 (820)
Q Consensus 623 ll~~~~~---~g~~~~a~~~~~~~~~ 645 (820)
++..+.. +|+.+++...++++++
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHH
Confidence 8887664 5688899988888775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-16 Score=177.53 Aligned_cols=328 Identities=9% Similarity=-0.007 Sum_probs=251.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHH
Q 003439 313 WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392 (820)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 392 (820)
...++..+.+.|++++|+.+++........+.. .+..+..+....|+.+.|.+.+..+.+.. |.+...+..+...|.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 344566667777888888877777765433332 33334455556777777777777777764 666777888888899
Q ss_pred hcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHH
Q 003439 393 KLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIK 469 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 469 (820)
+.|+.++|...|++... .+...|..+...+.+.|++++|...++.+.. ..|+.......+..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~---~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ---EVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999887653 3567888888899999999999999998866 44544433333345778899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHH----HHHHHHHHHH
Q 003439 470 IHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDK----ALNFFRQMLD 542 (820)
Q Consensus 470 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~ 542 (820)
.++.+++....++......+...+.+.|++++|...|++.. +.+...+..+...|...|++++ |+..|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 99888776543444555566778889999999999998876 3455668888899999999885 8999999998
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 003439 543 EGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASI 619 (820)
Q Consensus 543 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~ 619 (820)
+.|+. ..+..+...+...|++++|...++...+. .|+ ...+..+..+|.+.|++++|.+.++++ ...|+...
T Consensus 279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 56764 57888899999999999999999988853 454 456777889999999999999999887 45676544
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 620 -WGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 620 -~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
+..+..++...|+.++|+..++++++..|++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 34456778999999999999999999999764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-15 Score=177.75 Aligned_cols=396 Identities=11% Similarity=0.060 Sum_probs=184.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCH
Q 003439 216 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM 295 (820)
Q Consensus 216 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 295 (820)
+......|+.++|++++.+..... ..+...+..+..++...|++++|.++++..++.. +.+......+...+...|+.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 344455666677766666665411 2233345555555556666666666666555542 22334444555555555555
Q ss_pred HHHHHHHhccCC--C-CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHH
Q 003439 296 RHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIM 372 (820)
Q Consensus 296 ~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 372 (820)
++|...+++..+ | +.. |..+...+...|+.++|+..++++.+
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~---------------------------------- 144 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP---------------------------------- 144 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------
Confidence 555555555433 2 223 55555555555555555555555544
Q ss_pred HhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch--------HHHHHHHHH-----HHcCCh---HHHHHHHH
Q 003439 373 RRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI--------SWNTLITGY-----AQNGLA---SEAIEVFQ 436 (820)
Q Consensus 373 ~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~l~~ 436 (820)
. .+.+..+...+...+.+.|..+.|.+.++.... +.. ....++... ...+++ ++|++.++
T Consensus 145 -~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 145 -R--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred -h--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 3 244555555666677777788888877776654 211 111111111 111223 56666666
Q ss_pred hhhhcCCCCCCccc-Hhh----HHHHhhccCChhHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003439 437 MMEECNEINPNQGT-YVS----ILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMYGKCGRIDDAMSLFYQVP 510 (820)
Q Consensus 437 ~m~~~~g~~pd~~t-~~~----ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 510 (820)
.+.+.....|+... +.. .+.++...|+.++|+..++.+.+.+.. |+. ....+...|...|++++|+..|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 66641122332211 110 022233445555555555555554321 111 11113444555555555555555443
Q ss_pred CCCc-------cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 511 RSSS-------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 511 ~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
..+. ..+..+..++...|++++|+++++++.+. .|... .+. ...-.
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~------------------------~~~~~ 353 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYG------------------------SPTSI 353 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecC------------------------CCCCC
Confidence 2111 11222333444555555555555555442 11100 000 00001
Q ss_pred CC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 PH---LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p~---~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
|+ ...+..+..++...|++++|++.++++ ...| +...|..+...+...|+.++|+..++++++++|++...+..+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 11 112333444455555555555555544 2222 233455555555555555555555555555555555555555
Q ss_pred HHHhhhcCCcchHHHHHHHHHh
Q 003439 658 SNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+..+...|+|++|..+++.+.+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-15 Score=171.74 Aligned_cols=418 Identities=12% Similarity=0.006 Sum_probs=284.8
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChHHHHhHHHhhhcC
Q 003439 181 AASLLHMYCRFGLANVARKLFDDMP--VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM-DPITVASILPVCARS 257 (820)
Q Consensus 181 ~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 257 (820)
+..+-+.|.+.|++++|.+.|++.. .|+...|..+..+|.+.|++++|++.+++..+. .| +...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 4455677888999999999999865 467788999999999999999999999998875 34 455788888999999
Q ss_pred CChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHH
Q 003439 258 DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQ 337 (820)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (820)
|++++|..-+..+...+-..+.... .++.-+.+......+...++.-+ .+..++..+.. |........+..-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 9999999888766555322222222 22222211112234444443322 23334443322 222222221111111100
Q ss_pred HcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHH------HhcCCHHHHHHHHhcCCC--
Q 003439 338 QAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY------AKLGIINSACAVFEGLPV-- 409 (820)
Q Consensus 338 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~-- 409 (820)
+ ..|+. ...++..+ ...+++++|.+.|+....
T Consensus 285 ~--~~~~~--------------------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 285 E--LDEET--------------------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred c--ccccc--------------------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 0 00100 00000000 123566677776665442
Q ss_pred ----CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchh
Q 003439 410 ----KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF 484 (820)
Q Consensus 410 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 484 (820)
.+...|+.+...+...|++++|+..|++... +.|+. ..|..+...+...|++++|...++.+++.. +.+..
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~ 400 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD 400 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2345677777777888888888888888776 55653 356666677778888888888888887764 23567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACS 560 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 560 (820)
++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++.
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 88888889999999999999998876 34455677888899999999999999999988 4565 468888889999
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCCh-h-------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 003439 561 HSGLVSEGQRYFHMMQEEFGIKPHL-K-------HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA-SIWGALLGACRIH 630 (820)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~g~~p~~-~-------~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 630 (820)
..|++++|.+.|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+. ..|..+...+.+.
T Consensus 479 ~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99999999999998774 34431 1 1222223344579999999999885 556654 4789999999999
Q ss_pred CChhHHHHHHHHHhccCCCCcc
Q 003439 631 GNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
|++++|+..++++.++.+....
T Consensus 556 g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 556 GDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cCHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999998875443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-15 Score=177.05 Aligned_cols=363 Identities=9% Similarity=0.025 Sum_probs=205.1
Q ss_pred HHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCc
Q 003439 285 LINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLND 360 (820)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~ 360 (820)
.+......|+.++|++++..... .+...+..+...+.+.|++++|.++|++..+. .|+ ......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33444445555555555554432 12223455555555555555555555554432 222 2223333334444444
Q ss_pred chhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHh
Q 003439 361 CRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQM 437 (820)
Q Consensus 361 ~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 437 (820)
.++|...+..+++. .+.+.. +..+..++...|+.++|...+++..+ .+...+..+...+...|..++|++.++.
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 44444444444443 244555 67777788888888888888877653 2455566677777778888888887775
Q ss_pred hhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhhCC---C
Q 003439 438 MEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI---DDAMSLFYQVP---R 511 (820)
Q Consensus 438 m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~---~ 511 (820)
... .|+... -+. ...+ ....+. .+...+...+++ ++|++.++.+. +
T Consensus 176 ~~~----~p~~~~---~l~-------~~~~----~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 176 ANL----TPAEKR---DLE-------ADAA----AELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CCC----CHHHHH---HHH-------HHHH----HHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 542 333100 000 0000 000000 000011111222 44444444443 1
Q ss_pred CCccccch-------HHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC
Q 003439 512 SSSVPWNA-------IISCHGIHGQGDKALNFFRQMLDEGVR-PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP 583 (820)
Q Consensus 512 ~~~~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p 583 (820)
.++..... .+..+...|++++|+..|+++.+.+-. |+.. ...+..++...|++++|+.+|+.+.......+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 11111101 122334557777777777777765421 3221 12245567777777777777776653211110
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-------------CC---HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003439 584 --HLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VR-------------PD---ASIWGALLGACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 584 --~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~-------------p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 644 (820)
.......|..++...|++++|.+.++++. .. |+ ...+..+...+...|+.++|+..+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12345556666777777777777777662 22 23 2245567778899999999999999999
Q ss_pred ccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 645 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 645 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
+..|+++..+..++.++...|+.++|.+.++++.+..
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999988754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-14 Score=163.26 Aligned_cols=420 Identities=13% Similarity=0.071 Sum_probs=220.8
Q ss_pred HhhcCCChhHHHHHhccCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh---HHHHhHHHhhhcCCCh
Q 003439 187 MYCRFGLANVARKLFDDMPVRDSG---SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP---ITVASILPVCARSDNI 260 (820)
Q Consensus 187 ~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~ 260 (820)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+. ..+..+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 355778888888888887643322 23377788888888888888888876 3322 2222334566777888
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHh--CCChhhHHHHHHHHHH
Q 003439 261 LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ--SNDPITAHGFFTTMQQ 338 (820)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 338 (820)
+.|.++++.+++... .+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 888888888887753 3456666778888888888888888888866443332224344444 4555558888888877
Q ss_pred cCCCCC-cchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC-CchHHH
Q 003439 339 AGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWN 416 (820)
Q Consensus 339 ~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~ 416 (820)
. .|+ ...+.....++...| -...|.++..+-+.- +...+.
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~------------------------------------~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNR------------------------------------IVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcC------------------------------------CcHHHHHHHHhCccccCHHHHH
Confidence 5 233 223344444444444 444444444332210 000000
Q ss_pred HH----HHHHH---------HcCC---hHHHHHHHHhhhhcCCCCCCccc-H----hhHHHHhhccCChhHHHHHHHHHH
Q 003439 417 TL----ITGYA---------QNGL---ASEAIEVFQMMEECNEINPNQGT-Y----VSILPAYSHVGALRQGIKIHARVI 475 (820)
Q Consensus 417 ~l----i~~~~---------~~g~---~~~A~~l~~~m~~~~g~~pd~~t-~----~~ll~a~~~~~~~~~a~~i~~~~~ 475 (820)
-+ +.-.+ ..++ .+.|+.-++.+....+-.|.... | .-.+-++...++..++.+.++.+.
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00 00000 0111 23444444444431222232211 1 123344555666666666666666
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---------ccccchHHHHHHhcCChHHHHHHHHHHHHcCC-
Q 003439 476 KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS---------SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV- 545 (820)
Q Consensus 476 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 545 (820)
..+.+.-..+-.++.++|...+++++|..+|.++...+ ......|.-+|...+++++|..+++++.+.-.
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 55544444455566666666666666666666553211 11123455555556666666666666555210
Q ss_pred ----------CCC--hh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 546 ----------RPD--HI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 546 ----------~p~--~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
.|| -. .+..++..+...|++.+|++.++.+... -+-|......+.+++...|+..+|++.++..
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 111 11 1222344445555555555555555421 1224445555555555555555555555443
Q ss_pred CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 612 PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 612 ~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
...|+.. +.-.++.+....|++++|..+.+.+.+..|+++
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 2334322 444444445555555555555555555555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-13 Score=152.22 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
..++|+++|.+.+.. .| |...-+.+.-.++..|++.+|..+|.+..+. ..-...+|-.+...|.-+|++..|.++
T Consensus 627 ~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 344555555555552 22 3344444555555555555555555555543 112333445555555555555555555
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH-------------------HHhhhc
Q 003439 608 IQNM----PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS-------------------NIYANV 664 (820)
Q Consensus 608 ~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~-------------------~~y~~~ 664 (820)
|+.. -.+.+..+.+.|..++...|.+.+|.+.+..+..+.|.|+.....++ .+....
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~ 782 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAV 782 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 5543 11223445555555555555555555555555555555555433322 233334
Q ss_pred CCcchHHHHHHHHHhCCC
Q 003439 665 GKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~~~ 682 (820)
+..++|.++|..+...+-
T Consensus 783 ~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 783 KELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 456667777777766544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-15 Score=171.93 Aligned_cols=325 Identities=10% Similarity=-0.025 Sum_probs=265.1
Q ss_pred chHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 003439 346 LTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGY 422 (820)
Q Consensus 346 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 422 (820)
.-..-++..+...|+.+.|..++..++... +.+......++......|+.++|...|+.+.. .+...|..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 345556777888899999999999998875 55555666666777789999999999998863 3567888899999
Q ss_pred HHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 423 AQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 423 ~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
.+.|++++|+..|++... +.|+. ..+..+...+...|+.++|...+..+......+.. .+..+ ..+.+.|++++
T Consensus 121 ~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 121 LKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHH
Confidence 999999999999999987 66764 45667788899999999999999988776544333 33333 34788999999
Q ss_pred HHHHHhhCCCCC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHH----HHHHH
Q 003439 502 AMSLFYQVPRSS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSE----GQRYF 572 (820)
Q Consensus 502 A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~ 572 (820)
|...++.+.+.+ ...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999876432 223444567888999999999999999984 565 4577788889999999986 79999
Q ss_pred HHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 573 HMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 573 ~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+...+ +.|+ ...+..+..+|.+.|++++|...+++. ...|+ ..++..+..++...|++++|+..++++++.+|+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 88874 4554 568889999999999999999999987 45565 457888999999999999999999999999998
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
++..+..++.++...|++++|...++.+.+...
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 887777788999999999999999999876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-12 Score=143.90 Aligned_cols=477 Identities=11% Similarity=0.036 Sum_probs=286.4
Q ss_pred hhHHHHHhccCCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHHC--CCCCChHHHHhHHHhhhcCCChHHHHHHHH
Q 003439 194 ANVARKLFDDMPVRDSGSWNAMI---SGYCQSGNAVEALDILDEMRLE--GVSMDPITVASILPVCARSDNILSGLLIHL 268 (820)
Q Consensus 194 ~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (820)
++.|.+.|......+..-.-.|+ ......|++..|+.+|+..... ..+||... .+-..+.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46666666655432222111222 2233456777777777775432 23344322 12234456677777777777
Q ss_pred HHHHhCCCccHHHHHHHHHHHHccC---CHHHHHHHHhcc---CCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCC
Q 003439 269 YIVKHGLEFNLFVSNNLINMYAKFG---MMRHALRVFDQM---MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQ 342 (820)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 342 (820)
.+++... .++..+-.|.-.-.... .+..+..++... ...|++..+.|...|.-.|+++.++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 7766532 12222222222212222 233444444333 2246777777777777777777777777776554211
Q ss_pred --CCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHH
Q 003439 343 --PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNT 417 (820)
Q Consensus 343 --pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~ 417 (820)
.-...|-.+.+++-..|+++.|...|-...+.. ...-+..+-.|..+|.+.|+++.|...|+.+... +..+-..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 112335566677777777777777777776654 1111334456778888888888888888776533 3445555
Q ss_pred HHHHHHHcC----ChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHH----HhCCCCchhHHHH
Q 003439 418 LITGYAQNG----LASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVI----KNCLCFDVFVATC 488 (820)
Q Consensus 418 li~~~~~~g----~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~~~~~~~~~ 488 (820)
+...|+..+ ..++|..++.+..+ ..| |...|..+-.. ...+++......+..+. ..+-.+.+.+.|.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~---~~~~d~~a~l~laql-~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLE---QTPVDSEAWLELAQL-LEQTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHh---cccccHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 555565554 34666666666555 223 33334333333 33444444455554433 3455567778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-------CCcc------ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHH
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVPR-------SSSV------PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 554 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 554 (820)
+...+...|.++.|...|.+... +|.. +--.+...+-..++.+.|.+.|..... ..|+.+ .|..
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHH
Confidence 88888888888888888876541 2221 111244555666788888888888888 367765 4555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh----CCCCCCHHHHHHHHHHHHh-
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN----MPVRPDASIWGALLGACRI- 629 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~----m~~~p~~~~~~~ll~~~~~- 629 (820)
++..-...+...+|...+..... ....++..++-+.+.+.+...+.-|.+-|+. ....+|+.+.-+|.+.|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 55333445677888888877764 4455566677777777777777777764433 3334677777777776542
Q ss_pred -----------cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 630 -----------HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 630 -----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.+..+.|++.|.+++..+|.|.-+-..++-+++..|+|++|..+|.+..+...
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 23457788888888888888887777888888888888888888888877644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-13 Score=132.63 Aligned_cols=327 Identities=17% Similarity=0.210 Sum_probs=223.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhc--CCcc----hHHHHHHHHHhCCCCcHHHHHH
Q 003439 110 VYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACR--NLVD----GKKIHCSVLKLGFEWDVFVAAS 183 (820)
Q Consensus 110 ~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~----~~~~~~~~~~~g~~~~~~~~~~ 183 (820)
+++=|.|+.. ..+|....+.-+|+. |+..|+..+.-.--.|++... +..+ -.+.+-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~-m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYER-MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHH-HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--
Confidence 4455666654 456888888889999 998888777666555555432 1111 2223333444442 222222
Q ss_pred HHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHH
Q 003439 184 LLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG 263 (820)
Q Consensus 184 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (820)
|.|++.+ -+|+..| +...+|..||.|+++--..+.|.+++++-.+...+.+..+|+.+|.+-+- ..+
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3455544 4555444 56679999999999999999999999999999999999999999987643 344
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHH----hcc----CCCCchHHHHHHHHHHhCCChhh-HHHHHH
Q 003439 264 LLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF----DQM----MERDVVSWNSIIAAYEQSNDPIT-AHGFFT 334 (820)
Q Consensus 264 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f----~~m----~~~d~~~~~~li~~~~~~g~~~~-A~~~~~ 334 (820)
+.+..+|+...+.||..++|+++...++.|+++.|++-+ .+| .+|...+|..+|..+.+.+++.+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 889999999999999999999999999999988776543 344 23677777777777777766643 344444
Q ss_pred HHHH----cCCCC----CcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc
Q 003439 335 TMQQ----AGIQP----DLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 406 (820)
Q Consensus 335 ~m~~----~g~~p----d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 406 (820)
+++. +.++| |..-|.+.+..|.+..+.+.|.++++.+..... |...|.. +
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------~~~ig~~------~-- 395 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------WKFIGPD------Q-- 395 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------hhhcChH------H--
Confidence 4432 12222 334456667777777777777777665433220 0000000 0
Q ss_pred CCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCC
Q 003439 407 LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC 480 (820)
Q Consensus 407 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 480 (820)
....-|..+....++....+.-+..|+.|.- .-.-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 ---~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 ---HRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0123355667777888888888899999887 778888888888999888888888888888888777643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-12 Score=129.60 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=201.8
Q ss_pred CcccHHHHHHhhc--ChHHHHHHHHHHHHhCCCCChhhhHHHHHH--HHccCChHHH-HHHhcccC--------------
Q 003439 46 REIDFDDLFQSCT--KLHHVKRLHALLVVSGKIKTVFSSTKLVNF--YANLGDLSFS-RHTFDHIS-------------- 106 (820)
Q Consensus 46 ~~~~~~~ll~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--y~~~g~~~~A-~~~f~~~~-------------- 106 (820)
.+.+=++|++--+ .+..+--++.+|...|+.-+.-+--.|+.. |-...++.-| .+.|-+|.
T Consensus 115 ~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 115 QVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3345566665443 666677788888888877666665555432 2222222222 22333332
Q ss_pred ---------CCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHHHHHHhCCCCc
Q 003439 107 ---------YRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWD 177 (820)
Q Consensus 107 ---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~ 177 (820)
.++..+|.+||.|+|+-...+.|.+++.+ -.....+.+..+||.+|.+.+-.. ++++...|+...+.||
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE-~~~~k~kv~~~aFN~lI~~~S~~~-~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKE-HRAAKGKVYREAFNGLIGASSYSV-GKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHH-HHHhhheeeHHhhhhhhhHHHhhc-cHHHHHHHHHhhcCCc
Confidence 23556899999999999999999999998 777788899999999997753322 5889999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcC
Q 003439 178 VFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARS 257 (820)
Q Consensus 178 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (820)
.+|+|+++...++.|+++.|++.+ ++++.+|++.|+.|...+|..+|..+.+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 999999999999999988887653 45556666666666666666666655555
Q ss_pred CChHH-HHHHHHHHHHh--C--CC----ccHHHHHHHHHHHHccCCHHHHHHHHhccCCC-----------CchHHHHHH
Q 003439 258 DNILS-GLLIHLYIVKH--G--LE----FNLFVSNNLINMYAKFGMMRHALRVFDQMMER-----------DVVSWNSII 317 (820)
Q Consensus 258 ~~~~~-a~~~~~~~~~~--g--~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------d~~~~~~li 317 (820)
++... +..+...+... | +. .|...+..-++.+.+..+.+-|.++-.-.... ...-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 55432 22222222221 1 11 12333444444455555555555554433221 112244555
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHH
Q 003439 318 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392 (820)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 392 (820)
...++....+.-+.+|+.|.-.-.-|+..+...+++|....+.++....++..++..| ......+..-++...+
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g-ht~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG-HTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHh
Confidence 6666777777777777777777777777777788887777777777777777777666 3333333333333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-11 Score=124.84 Aligned_cols=456 Identities=12% Similarity=0.075 Sum_probs=310.1
Q ss_pred hcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChHHHHhHHHhhhcCCChH
Q 003439 189 CRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDE----MRLEGVSMDPITVASILPVCARSDNIL 261 (820)
Q Consensus 189 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~ 261 (820)
++..-++.|.++++... ..+...|.+-...=-++|+.+...++..+ +...|+..|...|..=..+|-..|..-
T Consensus 417 arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 33444455555554433 23444555544444455555555554433 234455555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCcc--HHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHH
Q 003439 262 SGLLIHLYIVKHGLEFN--LFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTM 336 (820)
Q Consensus 262 ~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (820)
....+....+..|++.. ..+|+.-...+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk- 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK- 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence 55555555555554321 23444444555555555555555544433 2333444444433344444444444444
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCch
Q 003439 337 QQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVI 413 (820)
Q Consensus 337 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~ 413 (820)
++.. .+.....+-....-+-+.|++..|+.++.+.-+ .+..
T Consensus 576 ----------------------------------av~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 576 ----------------------------------AVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred ----------------------------------HHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 4443 244445555556666667888888877765542 2556
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
.|-+-+.....+..+++|..+|.+... ..|+...|.--+..---++..++|.+++++.++. ++.-...|-.+.+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 788888888889999999999998866 6677777766666666678899999999888875 333456778888899
Q ss_pred HhcCCHHHHHHHHhhCC--CCCcc-ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 003439 494 GKCGRIDDAMSLFYQVP--RSSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 570 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 570 (820)
-+.++++.|.+.|..-. -|+.+ .|-.|...--+.|+..+|..++++....+ +-|...|...+..-.+.|+.++|..
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998766 34444 48888888888899999999999998863 3356789999999999999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 571 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 571 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
+.....++ .+-+...|.--|.+..+.++-..+.+.+++.. .|+.+.-++...+.....++.|+..|++++.++|++
T Consensus 775 lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 775 LMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 98888864 44456778888888888888888888888764 455566677777888889999999999999999999
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEE
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIE 692 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~ 692 (820)
..++..+-..+...|.-++-.+++++-... .|.-|-.|+.
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 999999999999999988888888876543 2334555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-12 Score=139.73 Aligned_cols=536 Identities=9% Similarity=0.030 Sum_probs=297.0
Q ss_pred CCCCCcccHHHHHHhhc---ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHHH
Q 003439 42 ENESREIDFDDLFQSCT---KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMIS 118 (820)
Q Consensus 42 ~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 118 (820)
+..|+.+||.+++..++ +.+.+. ++..|....+.-+..+++.++......++.+.|. +|-..+|+.|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 56677777777775544 444444 6666666666666666777777666666655554 567778999999
Q ss_pred HHHhCCCchHHHHHHHHHh-------hhCCCCCCccccHHHHHhhcCCcc----------hHHHHHHHHHhCCCCcHHHH
Q 003439 119 VYVRCGRLSEAVDCFYQFT-------LTSGLRPDFYTFPPVLKACRNLVD----------GKKIHCSVLKLGFEWDVFVA 181 (820)
Q Consensus 119 ~~~~~g~~~~A~~l~~~~m-------~~~~~~p~~~t~~~ll~~~~~~~~----------~~~~~~~~~~~g~~~~~~~~ 181 (820)
+|.+.|+... ++.-++.| ...|+.-...-|...+.+|...-. -+.+++..++.+....+..+
T Consensus 92 ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 92 AYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 9999998754 22222211 122333334444444455543322 34455666665522111111
Q ss_pred HHHHHHhhcC-----CChhHHHHHhccCC-CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhh
Q 003439 182 ASLLHMYCRF-----GLANVARKLFDDMP-VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 255 (820)
Q Consensus 182 ~~li~~y~~~-----g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 255 (820)
+.=...+.+. ..+++-...-.... .++..+|.+++..-.-+|+.+.|..++.+|++.|.+.+..-|..+|-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-- 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-- 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--
Confidence 1111111111 11222222222222 478899999999999999999999999999999999999988888866
Q ss_pred cCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChh-----hHH
Q 003439 256 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPI-----TAH 330 (820)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~-----~A~ 330 (820)
.++......+..-|...|+.|+..|+...+-...+.|....+....+.-..-....+..+..+...+.+.+ -..
T Consensus 249 -~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~ 327 (1088)
T KOG4318|consen 249 -INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVI 327 (1088)
T ss_pred -CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 78888899999999999999999999888877777666433322211111111222333333321111111 122
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCC--cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC
Q 003439 331 GFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGW--FMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 408 (820)
Q Consensus 331 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 408 (820)
..+++..-.|+......| ++..-....|.-+...++-+.+...-. -+.++..+..++ ...|.+..
T Consensus 328 ~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l------------rqyFrr~e 394 (1088)
T KOG4318|consen 328 GSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL------------RQYFRRIE 394 (1088)
T ss_pred HHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH------------HHHHHHHH
Confidence 223333333443333222 222222335666666666666533210 011222233333 33344333
Q ss_pred CCCch-HHHHHHHHHHH---cCChHHHHHHHHhh------------hhc---CCCCC-------CcccHhhHHHHhhccC
Q 003439 409 VKDVI-SWNTLITGYAQ---NGLASEAIEVFQMM------------EEC---NEINP-------NQGTYVSILPAYSHVG 462 (820)
Q Consensus 409 ~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m------------~~~---~g~~p-------d~~t~~~ll~a~~~~~ 462 (820)
.+... .++ .-.+... .....+..++.... ... ....| =...-..++..|...-
T Consensus 395 ~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 395 RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 32111 111 1111111 11111111221111 110 00001 0011233444455444
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc------cchHHHHHHhcCChHHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNF 536 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l 536 (820)
+..+++..-+.....-+ ...|..||+.......+++|..+.++...+|... +..+.....+.+...++..+
T Consensus 474 n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 44444443333322222 2568899999999999999999999888666543 77888888999999999999
Q ss_pred HHHHHHcCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 537 FRQMLDEGV-RPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 537 ~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
+++|.+.-. .|+ ..++-.+++.-+..|+.+.-.++++-+.. .|+.-+ .-++....+.++...|.+.++..
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 999987422 333 34667778888888988888888877663 355442 33444455667777776665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-13 Score=136.17 Aligned_cols=426 Identities=14% Similarity=0.148 Sum_probs=280.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHh-HHHhhhcCCChHHHHHHHHHHHHhCCCcc----HHHHHHHHHHH
Q 003439 215 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVAS-ILPVCARSDNILSGLLIHLYIVKHGLEFN----LFVSNNLINMY 289 (820)
Q Consensus 215 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y 289 (820)
|..-|.-+....+|+..|+-..+...-||.-.+.. +-..+.+..++..|..++...+..-...+ +.+.+.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44566677788899999999888888888765432 33556677888899999888877543322 33455555567
Q ss_pred HccCCHHHHHHHHhccCC--CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHH--------HHHHHHHhcC
Q 003439 290 AKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV--------SLTSIVAQLN 359 (820)
Q Consensus 290 ~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--------~ll~a~~~~~ 359 (820)
.+.|.+++|..-|+...+ ||..+--.|+-.+..-|+.++..+.|.+|..--..||..-|. .++.-..+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 888999999999998755 677665556666677889999999999998766556555441 1111111100
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch---HHH------------------HH
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI---SWN------------------TL 418 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~------------------~l 418 (820)
.+..+.+.. ..+..- + +-.|.++..-+..+|-. -|. .-
T Consensus 367 -------~lk~~ek~~--ka~aek--~----------i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~k 425 (840)
T KOG2003|consen 367 -------HLKNMEKEN--KADAEK--A----------IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINK 425 (840)
T ss_pred -------HHHHHHHhh--hhhHHH--H----------HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence 011111111 000000 0 00001111111111100 000 01
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCC-------------------------------CcccHhh-----HHHHhhccC
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINP-------------------------------NQGTYVS-----ILPAYSHVG 462 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~p-------------------------------d~~t~~~-----ll~a~~~~~ 462 (820)
..-|.++|+++.|+++++-..+ ..-+. +...|+. --+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC
Confidence 1234555666655555544433 11110 0011111 111122357
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQ 539 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 539 (820)
++++|.+.+.+.+...-......|| +.-.+-+.|++++|++.|-++. ..+....-.+...|....++.+|++++-+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 8999999999888764333333333 2334678899999999997765 56666677788889999999999999977
Q ss_pred HHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 003439 540 MLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA 617 (820)
Q Consensus 540 m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~ 617 (820)
... +.| |...+.-|...|-+.|+-.+|.+.+-.--+ -++-+.++..-|..-|....-.++|..+|++. -+.|+.
T Consensus 584 ~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 766 556 456788888899999999999988754331 34557888888888899999999999999998 478999
Q ss_pred HHHHHHHHHHH-hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCc
Q 003439 618 SIWGALLGACR-IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 667 (820)
Q Consensus 618 ~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 667 (820)
+-|..++..|. +.|+++.|...|+..-..-|.+....-.|..++...|.-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999998875 679999999999999999999999999999988888863
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-12 Score=146.42 Aligned_cols=385 Identities=8% Similarity=-0.010 Sum_probs=258.5
Q ss_pred HHHHHHHccCCHHHHHHHHhccCCCCchHHH-HH--HHHHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcC
Q 003439 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWN-SI--IAAYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLN 359 (820)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~-~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 359 (820)
.++..+...|+.++|+..+++...|+...+. .+ ...|...|++++|+++|+++.+. .|+ ...+..+...+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcC
Confidence 4555555556666666666655544322222 22 33455556666666666666554 222 233344445555555
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHH
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQ 436 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 436 (820)
+.++|.+....+.+. .|+...+..++..+...++..+|.+.++++.+. +...+..+..++.+.|-...|+++..
T Consensus 151 q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666666655555543 244444555555555566666699999888643 56677888899999999999987766
Q ss_pred hhhhcCCCCCCcccHhh-----------HHHHh-hcc----CC---hhHHHHHHHHHHHh-CCCCc--hhHHHHH---HH
Q 003439 437 MMEECNEINPNQGTYVS-----------ILPAY-SHV----GA---LRQGIKIHARVIKN-CLCFD--VFVATCL---VD 491 (820)
Q Consensus 437 ~m~~~~g~~pd~~t~~~-----------ll~a~-~~~----~~---~~~a~~i~~~~~~~-g~~~~--~~~~~~l---i~ 491 (820)
+- |+.++=.. .+.-- ... .. .+.|..-++.+... +-.|. .....+. +-
T Consensus 228 ~~-------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 228 EN-------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred hC-------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 53 33332111 11111 111 11 23344444544441 22232 1223333 34
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC--cccc--chHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHhc
Q 003439 492 MYGKCGRIDDAMSLFYQVPRSS--SVPW--NAIISCHGIHGQGDKALNFFRQMLDEGV-----RPDHITFVSLLTACSHS 562 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~~~~--~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~ 562 (820)
++.+.|+..++++.|+.+.... +..| -++..+|...+++++|+.+|+++....- .++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 5678899999999999999443 2334 5678899999999999999999977431 12233357789999999
Q ss_pred CCHHHHHHHHHHhHHhhC----------CCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFG----------IKPHL---KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC 627 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g----------~~p~~---~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 627 (820)
+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.++++ ...| |...+..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999986311 02332 34556678889999999999999998 3344 667999999999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++.+|+..++.+..++|++......++..+...|+|++|..+.+...+.
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999888776
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-10 Score=124.72 Aligned_cols=576 Identities=13% Similarity=0.094 Sum_probs=318.8
Q ss_pred cCChHHHHHHhcccCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCcc-ccHHHHHhhcCCcc---hHH
Q 003439 92 LGDLSFSRHTFDHISY---RNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFY-TFPPVLKACRNLVD---GKK 164 (820)
Q Consensus 92 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~---~~~ 164 (820)
.|++++|.+++.++.. .+...|..|...|-+.|+.++++..+ |...-+.|... .|..+-.-....+. |.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~---llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW---LLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH---HHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 3888899888887743 35677888888888888888887655 44444555433 22222222223332 444
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCc-ccH-------HHHHHHHHhCCChhHHHHHHHHHH
Q 003439 165 IHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS-GSW-------NAMISGYCQSGNAVEALDILDEMR 236 (820)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~-------~~li~~~~~~g~~~~A~~l~~~m~ 236 (820)
.+...++.. +++....---..+|-+.|+...|..-|.++-+.+. +.| -.++..+...++-+.|++.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455555543 33333333345567777777777666665543222 111 123445555566666777666655
Q ss_pred HC-CCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHh---------------------------CCCccHHH-HHHHHH
Q 003439 237 LE-GVSMDPITVASILPVCARSDNILSGLLIHLYIVKH---------------------------GLEFNLFV-SNNLIN 287 (820)
Q Consensus 237 ~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~ 287 (820)
.. +-..+..+++.++..+.+....+.+......+... ++.++..+ ...+--
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 42 11222334444445555555555555444443331 12222333 111111
Q ss_pred HHHccCCHHHHHHHHhcc----CCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchh
Q 003439 288 MYAKFGMMRHALRVFDQM----MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 363 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m----~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 363 (820)
...+.+...+++.-|-.. +..++..|.-+..+|.+.|++.+|+.+|..+...-.--+.+.|-.+...+-..|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 112233333333333221 1124456778888999999999999999998876555567788888888888999999
Q ss_pred hhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch-----HH-------HHHHHHHHHcCChHHH
Q 003439 364 SRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI-----SW-------NTLITGYAQNGLASEA 431 (820)
Q Consensus 364 a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~-------~~li~~~~~~g~~~~A 431 (820)
|.+.+..++... +.+..+..+|...|-+.|+.++|.+.+..+..+|.. .| --....|.+.|+.++=
T Consensus 468 A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999988875 666777888899999999999999999988766521 11 1233456677877765
Q ss_pred HHHHHhhhh----cCC-----------------CCCCcccHhhHHHHhhccCChhHHHHHH------HHHHHhCCCCch-
Q 003439 432 IEVFQMMEE----CNE-----------------INPNQGTYVSILPAYSHVGALRQGIKIH------ARVIKNCLCFDV- 483 (820)
Q Consensus 432 ~~l~~~m~~----~~g-----------------~~pd~~t~~~ll~a~~~~~~~~~a~~i~------~~~~~~g~~~~~- 483 (820)
+..-..|.. ..- ..-...+...++.+-.+.++.....+-. ......|+..+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 544444322 000 1112222233333333333322111111 111112222221
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---------cchHHHHHHhcCChHHHHHHHHHHHHc-CC--CCChh
Q 003439 484 -FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---------WNAIISCHGIHGQGDKALNFFRQMLDE-GV--RPDHI 550 (820)
Q Consensus 484 -~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---------~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~p~~~ 550 (820)
..+.-+|..+++.++.++|+.+...+...+... -..++.+....+++..|...++.|... +. .|...
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 244567778888999999998887766332222 334556667788888888888888764 11 23222
Q ss_pred -HHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHhHHhhCCCCChhHHHH-HHH
Q 003439 551 -TFVSLLTACSH-----------------------------------SGLVSEGQRYFHMMQEEFGIKPHLKHYGC-MVD 593 (820)
Q Consensus 551 -t~~~ll~a~~~-----------------------------------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~-li~ 593 (820)
.|+...+.... .+.+..|...+-... ...|+...++. |.-
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHH
Confidence 33323333333 334445555443333 23444322222 211
Q ss_pred HHH----------HcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------
Q 003439 594 LFG----------RAGHLGMAHNFIQNM-PV-RP--DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------- 652 (820)
Q Consensus 594 ~~~----------~~g~~~eA~~~~~~m-~~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------- 652 (820)
++. |.-.+-.+..++.+- .. .+ -..++-.+..+|.+-|-+..|+..|++++++.|.+.+
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~ 862 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNY 862 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcc
Confidence 111 111223333343322 11 11 2335556777788888888888888888887654322
Q ss_pred -----hHHhHHHHhhhcCCcchHHHHHHH
Q 003439 653 -----YYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 653 -----~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
+-..|.-+|-+.|+..-|.++.++
T Consensus 863 dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 863 DLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 122456678888888887777653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-10 Score=124.95 Aligned_cols=304 Identities=13% Similarity=0.173 Sum_probs=164.7
Q ss_pred HhcCcchhhhhHHHHHHHhCC-cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC----CchHHHHHHHHHHHcCChHH
Q 003439 356 AQLNDCRNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK----DVISWNTLITGYAQNGLASE 430 (820)
Q Consensus 356 ~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~ 430 (820)
.+....+....+...+.+... ...+...+.-+.++|...|++.+|.++|..+... +...|--+...|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 344444444555555544441 1223455666666666677777777766666532 45566666666666677777
Q ss_pred HHHHHHhhhhcCCCCCCcccH-hhHHHHhhccCChhHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 431 AIEVFQMMEECNEINPNQGTY-VSILPAYSHVGALRQGIKIHARVI--------KNCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 431 A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
|++.|+.... ..|+..-. .++-..+.+.|+.++|.+.+..+. ..+..|+....--..+.|.+.|+.++
T Consensus 468 A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 468 AIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 7777666665 45543322 233344556666666666665532 22233444444445555556665554
Q ss_pred HHHHHhhCCC---------------------------------------------------------------CCc--cc
Q 003439 502 AMSLFYQVPR---------------------------------------------------------------SSS--VP 516 (820)
Q Consensus 502 A~~~~~~~~~---------------------------------------------------------------~~~--~~ 516 (820)
-..+-..|.. .+. .-
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 3322111100 000 00
Q ss_pred c----chHHHHHHhcCChHHHHHHHHHHHHcCC--CCChh--HH-HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--
Q 003439 517 W----NAIISCHGIHGQGDKALNFFRQMLDEGV--RPDHI--TF-VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-- 585 (820)
Q Consensus 517 ~----~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-- 585 (820)
| .-++..+++.+.+++|+.+...+.+..+ .++.. .+ ...+.++...+++.+|..+++.|...++...++
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 2 3355667777888888888777776432 22221 22 234556667788888888888777664443332
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 586 -KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGA--CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 586 -~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
..|++....+.+.|+-.--..++... ..+|+......++.+ ....+.+.-|...+-+++...|++|-...+|+-++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 35555555555555444444444333 223332222222222 34556677788888888888888887777666554
Q ss_pred h
Q 003439 662 A 662 (820)
Q Consensus 662 ~ 662 (820)
-
T Consensus 785 i 785 (895)
T KOG2076|consen 785 I 785 (895)
T ss_pred H
Confidence 3
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-14 Score=145.36 Aligned_cols=255 Identities=14% Similarity=0.153 Sum_probs=112.6
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH-HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP-AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG 497 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 497 (820)
...+.+.|++++|++++++... ....|+...|..++. .+...++.+.|.+.++.+...+.. ++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 4455667777777777754333 222455555544333 445567777888887777765533 55566777776 6888
Q ss_pred CHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003439 498 RIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHM 574 (820)
Q Consensus 498 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 574 (820)
++++|.++++..- .++...|..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999988887664 4556668888888999999999999999987643 234566788888899999999999999999
Q ss_pred hHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 575 MQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 575 m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
..+. .|+ ......++.++...|+.+++.++++... .+.|...|..+..++...|+.++|...++++....|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8854 564 6788889999999999999888887661 234566889999999999999999999999999999999
Q ss_pred chHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 652 GYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 652 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.....+++++...|+.++|.+++++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-10 Score=116.63 Aligned_cols=213 Identities=12% Similarity=0.128 Sum_probs=167.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.|+.-.+.+-++.+++....++. .|--+..+|....+.++..+.|+... +.|..+|.--...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666777777777776544332 25556667888888888888887665 455666777777777778899999999
Q ss_pred HHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 003439 538 RQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP 615 (820)
Q Consensus 538 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p 615 (820)
++.+. +.|+. ..|.-+.-+..+.+.++++...|+..+++ ++-.+++|+-....+...++++.|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 67754 57888888888899999999999999875 4555678899999999999999999999876 4555
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 616 D---------ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 616 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+ +.+-.+++-.-. .+++..|+.+++++++++|....+|..|+.+-...|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 223333333323 38999999999999999999999999999999999999999999988654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-10 Score=124.13 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-----VRPDASIWGALLGAC 627 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~~~ 627 (820)
+.++..|.+.-+..++...-+... .+-+ | ..|..||+.+.+..++++|..+.++.. ..-|..-+..+.+..
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 344555555555555554433332 2111 1 568888888888888888888888773 223444566777778
Q ss_pred HhcCChhHHHHHHHHHhc---cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCc
Q 003439 628 RIHGNMELGAVASDRLFE---VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKK 684 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 684 (820)
.+++....+..+.+++.+ ..|.-......+.+--+..|+.+...+..+-....|+..
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888888888777655 223333444556667777888888888888887777755
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-10 Score=116.08 Aligned_cols=191 Identities=13% Similarity=0.165 Sum_probs=153.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTA 558 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 558 (820)
+.+...+.+-|+-.++.++|...|++..+ +-...|+-|..-|....+...|++-+++.++ +.| |...|..|..+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 34556666777777888888888887663 3345588888899999999999999999998 666 66799999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~ 635 (820)
|.-.+...-|+-+|++.. .++| |...|.+|.+.|.+.+++++|++-|.+.- ..-+...+..|...|.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 999999999999998877 4566 57899999999999999999999998872 12344788899999999999999
Q ss_pred HHHHHHHHhc-------cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 636 GAVASDRLFE-------VDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 636 a~~~~~~~~~-------~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
|...+++-++ .+|+-..+..-|+.-+.+.+++++|..+-....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999998776 334334445568888999999999987765543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-09 Score=106.55 Aligned_cols=478 Identities=11% Similarity=0.097 Sum_probs=345.7
Q ss_pred cCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHH
Q 003439 190 RFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 266 (820)
Q Consensus 190 ~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (820)
..+++..|+.+|++.. .++...|---+..=.++..+..|..++++....=...|..-| --+-.=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 3567788999998876 356777888888888999999999999998764333333322 223333467899999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhcc--CCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC
Q 003439 267 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQM--MERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 344 (820)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 344 (820)
|+...+ ..|+...|++.|+.=.+...++.|+.++++. ..|++.+|--....=-++|+...|..+|....+. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 998876 4899999999999999999999999999986 4599999999888888999999999999887653 223
Q ss_pred cchHHHHHHHHH----hcCcchhhhhHHHHHHHhCCcCcc--hhHHhHHHHHHHhcCCHHHHHHHH--------hcCCCC
Q 003439 345 LLTLVSLTSIVA----QLNDCRNSRSVHGFIMRRGWFMED--VIIGNAVVDMYAKLGIINSACAVF--------EGLPVK 410 (820)
Q Consensus 345 ~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~~li~~y~~~g~~~~A~~~f--------~~~~~~ 410 (820)
...-..+..+++ .....+.++.++..++.. ++.+ ..++..+...--+.|+........ +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 333444445554 345678888999988876 3444 456666666656667654443332 222222
Q ss_pred ---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-------cHhhHHHHh---hccCChhHHHHHHHHHHHh
Q 003439 411 ---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-------TYVSILPAY---SHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 411 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------t~~~ll~a~---~~~~~~~~a~~i~~~~~~~ 477 (820)
|-.+|--.+..--..|+.+...++|++... +++|-.. .|.-+=-+| ....+.+.++++++..++.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 556777777777788999999999999875 5767331 121111122 3468899999999999883
Q ss_pred CCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-Chh
Q 003439 478 CLCFDVFVATCLVDMYG----KCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHI 550 (820)
Q Consensus 478 g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ 550 (820)
++....++..+=-||+ ++.++..|.+++.... .|-...+-..|..-.+.++++....++++.++ ..| |..
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~ 472 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCY 472 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhH
Confidence 4555667776666665 6789999999998766 45556677777777889999999999999999 556 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACR- 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~- 628 (820)
+|......=...|+.+.|..+|.....+..+......|.+.|+.=...|.++.|..++++. ...+...+|-++..--.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 8888888888899999999999988876444445567888888888999999999999987 34455558887765433
Q ss_pred ----hcC-----------ChhHHHHHHHHHhc----cCCCCcc--hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 629 ----IHG-----------NMELGAVASDRLFE----VDSENVG--YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 629 ----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+.+ +...|..+|+++.. ..|.... ..-..-++-...|...+...+-.+|.+
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 333 55678888888764 3342221 122334455566777777777766654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=128.77 Aligned_cols=275 Identities=15% Similarity=0.090 Sum_probs=213.4
Q ss_pred CHHHHHHHHhcCCCC--Cch-HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHH
Q 003439 396 IINSACAVFEGLPVK--DVI-SWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
+..+|...|..++.. |+- ....+..+|...+++++|.++|+...+...... +..+|.++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886643 433 334567889999999999999999987222222 445677766543321 112222
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 472 -ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 472 -~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
+.+++. -+..+.+|.++.+.|.-+++.+.|++.|++..+-| ..+|+-+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 223332 24467899999999999999999999999988544 45677777778888999999999999877 677
Q ss_pred Chh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003439 548 DHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGAL 623 (820)
Q Consensus 548 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~l 623 (820)
... .|..+...|.+.++++.|.-.|+... .+.|. .....++...+-+.|+.|+|+++++++ ...| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 664 88889999999999999999999877 56774 566777888999999999999999988 3344 44444445
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..+...+++++|...+|++.++-|++...|.+++.+|.+.|+.+.|..-|..|.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 666778899999999999999999999999999999999999999999888877655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=129.85 Aligned_cols=245 Identities=12% Similarity=0.116 Sum_probs=196.4
Q ss_pred CChHHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHH
Q 003439 426 GLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCL--CFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 426 g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A 502 (820)
-+..+|+..|..... ..+| ......+..+|...+++++++.+|+.+.+... .-+..+|++.+--+-+.=.+..-
T Consensus 333 y~~~~A~~~~~klp~---h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS---HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHhhHH---hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 356899999999554 3444 35556778899999999999999999977532 23677888776544332222221
Q ss_pred HHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 003439 503 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 581 (820)
Q Consensus 503 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~ 581 (820)
-+-+-.+.+..+.+|.++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+...
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----- 482 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----- 482 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----
Confidence 1222233356678899999999999999999999999999 778 56799999888999999999999997654
Q ss_pred CCChhHHHHH---HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 582 KPHLKHYGCM---VDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 582 ~p~~~~~~~l---i~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
..++.+|+++ .-.|.|.++++.|+-.|+++ .+.|. .++...+...+.+.|+.|+|++++++++.++|.|+-.-+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 4566677765 56789999999999999988 67775 4566677778899999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.++...+++++|...++++++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999999865
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-07 Score=101.18 Aligned_cols=389 Identities=11% Similarity=0.072 Sum_probs=288.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHH
Q 003439 255 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHG 331 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~ 331 (820)
....+.+.|+-++...++.- +.+...|. +|++..-++.|.++++...+ .+...|.+-...--++|+.+...+
T Consensus 387 VelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34445555666666666542 22333333 44555667777777776644 466677666666667788877777
Q ss_pred HHHH----HHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcc--hhHHhHHHHHHHhcCCHHHHHHHHh
Q 003439 332 FFTT----MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMED--VIIGNAVVDMYAKLGIINSACAVFE 405 (820)
Q Consensus 332 ~~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~~li~~y~~~g~~~~A~~~f~ 405 (820)
++.+ +...|+..+...|..=..+|-..|..-.+..|...++..| .+.. ..+++.-.+.+.+.+.++-|+.+|.
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig-vEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG-VEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc-cccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 7654 4567888888888888888988899888888888888887 4432 4578888888999999999999887
Q ss_pred cCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCC
Q 003439 406 GLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCF 481 (820)
Q Consensus 406 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 481 (820)
...+ .+...|...+..--..|..++...+|++... ..|.... +.......-..|++..|+.++..+.+....
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~---~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE---QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 6543 3667788777777778889999999999877 4454433 333444566679999999999998887644
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 558 (820)
+..++-+-+........++.|+.+|.+.. .+....|.--+..---.++.++|++++++.++ .-|+-. .|..+...
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQI 694 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHH
Confidence 67788888888999999999999998776 45555677777777778899999999999888 577764 77777888
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNMP--VRPDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~ 635 (820)
+.+.++++.|.+.|..=. ..-|+ +..|-.|.++=-+.|.+-.|..++++.. .+.+...|-..|..-.++|+.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 889999999998876533 22343 4577778888888999999999998873 23366799999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHhHH
Q 003439 636 GAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
|..+..++++--|.+...+.--+
T Consensus 772 a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHH
Confidence 99999888887776555444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-09 Score=108.29 Aligned_cols=417 Identities=12% Similarity=0.118 Sum_probs=298.6
Q ss_pred HHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhh
Q 003439 288 MYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 364 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 364 (820)
-=-..+++..|+.+|++... +++..|---+..=.++.....|..++++....=...|.. +-.-+..=-.+|++..|
T Consensus 82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHH
Confidence 33445677778888887754 567778777888888888888888888876532222222 22333344567888889
Q ss_pred hhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcC
Q 003439 365 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMMEECN 442 (820)
Q Consensus 365 ~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 442 (820)
++++..-+. ..|+...+++.|+.-.+-..++.|+.+++... .|++.+|--...---++|...-|..+|....+
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie-- 235 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE-- 235 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--
Confidence 999888776 57999999999999999999999999998754 67888888877777888999999998888766
Q ss_pred CCCCCcccHhhHHHHh----hccCChhHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH--------hhC
Q 003439 443 EINPNQGTYVSILPAY----SHVGALRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLF--------YQV 509 (820)
Q Consensus 443 g~~pd~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~--------~~~ 509 (820)
.-.|...-..+..++ .....++.|.-++..+++.-... ....|..+...--+-|+.....+.. +.+
T Consensus 236 -~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 236 -FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 222333333344444 34567888999999888863322 1345555555545556544443332 222
Q ss_pred C---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--H---HHHH-HH-HH---HhcCCHHHHHHHHHHhH
Q 003439 510 P---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--T---FVSL-LT-AC---SHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 510 ~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t---~~~l-l~-a~---~~~g~~~~a~~~~~~m~ 576 (820)
. +-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. - |..| |+ +| ....+++.+.++++...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 335556777888888889999999999999986 666321 1 2222 22 22 34688999999999887
Q ss_pred HhhCCCC-ChhHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 577 EEFGIKP-HLKHYGCMVDLFG----RAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 577 ~~~g~~p-~~~~~~~li~~~~----~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
+ +.| ...++.-+--+|+ |+.++..|.+++... +.-|-.-++...|..-.+.++++....+|++.++..|.+
T Consensus 394 ~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 394 D---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred h---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 4 445 4567776666655 788999999999876 778999999999999999999999999999999999999
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHH
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRN 719 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~ 719 (820)
-.++...+.+-...|++|.|..+|+.+.+......|..-| +.- --|-.....+.....+|..+.+
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw---kaY-IdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW---KAY-IDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---HHh-hhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887767777777 111 1122333334445555655543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-10 Score=125.00 Aligned_cols=275 Identities=9% Similarity=0.042 Sum_probs=193.5
Q ss_pred cCCHHHHHHHHhcCCCC--C-chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHh--hHHHHhhccCChhHHH
Q 003439 394 LGIINSACAVFEGLPVK--D-VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV--SILPAYSHVGALRQGI 468 (820)
Q Consensus 394 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~ 468 (820)
.|+++.|++.....++. + ...|-.......+.|++++|.+.|.++.+ ..|+..... .....+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 47888888777765443 1 22232223444678888888888888866 566664443 2244667788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-----------ccchHHHHHHhcCChHHHHHHH
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-----------PWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~ 537 (820)
+.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.... .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887765 335677888888888889999888888887744332 1333333333444555666666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 003439 538 RQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD 616 (820)
Q Consensus 538 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~ 616 (820)
+.+-+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++......|+.+++.+.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665442 334566778888899999999999999987764 34454221 223333458999999988877 44554
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 617 -ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 617 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+..+...|...+++++|++.|+++++.+|+ ...+..|+.++.+.|+.++|.+.+++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 446778888999999999999999999999995 45577899999999999999999987654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-09 Score=107.35 Aligned_cols=253 Identities=11% Similarity=0.127 Sum_probs=194.4
Q ss_pred HHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcC
Q 003439 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC--FDVFVATCLVDMYGKCG 497 (820)
Q Consensus 420 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y~~~g 497 (820)
.+|......+++++-...... .|..-+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++-.--.+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 445555567777777777665 444333333333333455678899999999999887431 25667766653333222
Q ss_pred CHHH-HHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 498 RIDD-AMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 498 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
++.- |..++ .+.+--+.|...+..-|.-.++.++|+..|++.++ +.|.. ..|+.+..-|....+...|.+-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 33332 33344556677788888999999999999999999 56765 47888888999999999999999988
Q ss_pred HHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 576 QEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 576 ~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
. .+.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++...-.+..
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 7 4556 5678999999999999999999999998 5666 5679999999999999999999999999998877889
Q ss_pred hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.++.|+++|-+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999887665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-10 Score=120.26 Aligned_cols=220 Identities=15% Similarity=0.039 Sum_probs=101.0
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhH-------HHHHH
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFV-------ATCLV 490 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-------~~~li 490 (820)
...+.+.|++++|.+.++.+.+ ..|+. ..+..+...+...|+++.+.+++..+.+.+..+.... +..++
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~---~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLE---MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554 23422 2344445555555555555555555555543222211 11111
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH---HHHHHHHHhcCC
Q 003439 491 DMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF---VSLLTACSHSGL 564 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~ 564 (820)
+.-......+...+.++..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCC
Confidence 111112223344444444442 35556666677777777777777777777763 4444321 111111222344
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003439 565 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN--M-PVRPDASIWGALLGACRIHGNMELGAVASD 641 (820)
Q Consensus 565 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 641 (820)
.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|++ . ...||...+..+...+.+.|+.++|.++++
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544443221222112333444444455555555555542 1 234444444444444444555555544444
Q ss_pred HH
Q 003439 642 RL 643 (820)
Q Consensus 642 ~~ 643 (820)
+.
T Consensus 395 ~~ 396 (409)
T TIGR00540 395 DS 396 (409)
T ss_pred HH
Confidence 43
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-10 Score=120.93 Aligned_cols=284 Identities=12% Similarity=0.025 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHhccCCC--CchH-HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHH
Q 003439 292 FGMMRHALRVFDQMMER--DVVS-WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 368 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~~--d~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 368 (820)
.|+++.|++.+...++. +... |-.......+.|++++|.+.|.++.+. .|+...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~--------------------- 153 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQL--------------------- 153 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchH---------------------
Confidence 57777777666655442 1222 222223335666777777777666542 222111
Q ss_pred HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCC
Q 003439 369 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEIN 445 (820)
Q Consensus 369 ~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 445 (820)
.........+...|+.+.|...++.+.+ .+......+...|.+.|++++|.+++..+.+ .+..
T Consensus 154 -------------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~ 219 (398)
T PRK10747 154 -------------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVG 219 (398)
T ss_pred -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCC
Confidence 1111224556666666666666665542 2455566667777777777777777777766 3322
Q ss_pred CCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHH
Q 003439 446 PNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIIS 522 (820)
Q Consensus 446 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 522 (820)
++. .+..+- ...|..++....+..+.+...++++.++ +.+......+..
T Consensus 220 ~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 220 DEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred CHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 111 000000 0011222222223334444555555554 334445556666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 602 (820)
.+...|+.++|.+++++..+ ..||.... ++.+....++.+++.+..+...+++ +-|...+.++..++.+.|+++
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 66666666666666666666 23443211 2223334466677777666666431 223445666667777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 603 MAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 603 eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
+|.+.|+++ ...|+...+..|...+...|+.++|..++++.+.+
T Consensus 346 ~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 346 EASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777665 55677777667777777777777777777776654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=124.55 Aligned_cols=218 Identities=7% Similarity=-0.089 Sum_probs=89.0
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHH
Q 003439 458 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKAL 534 (820)
Q Consensus 458 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 534 (820)
....|+.+.+.+++..+.+....+...+.-.....+...|+++.|.+.++.+. +.+...+..+...|.+.|++++|.
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 34445555555555444433211111222223444444555555555554444 223333444445555555555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 535 NFFRQMLDEGVRPDHITFVSLLTA---CSHSGLVSEGQRYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 535 ~l~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
+++.++.+.++.+.......-..+ ....+..+++.+.+..+.+... .+.+...+.+++..+...|+.++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 555555554322111110000011 1111222222223333322100 01144445555555555555555555555
Q ss_pred hC-CCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHhccCCCCc--chHHhHHHHhhhcCCcchHHHHHH
Q 003439 610 NM-PVRPDASI---WGALLGACRIHGNMELGAVASDRLFEVDSENV--GYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 610 ~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+. ...||... +..........++.+.+++.+++.++..|+|+ .....|++++.+.|+|++|.+.++
T Consensus 288 ~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 288 DGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44 22333221 11111111223444555555555555555555 444555555555555555555555
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=128.31 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=79.6
Q ss_pred CcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHH
Q 003439 359 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQ 436 (820)
Q Consensus 359 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 436 (820)
++.+.+.+.+..+...+ +.++..+..++.. ...++.++|.+++...- .++...+..++..+.+.++++++.++++
T Consensus 58 ~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccccc--ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444443333 2233444555555 46666666666665442 2345556666667777777777777777
Q ss_pred hhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCC
Q 003439 437 MMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSS 513 (820)
Q Consensus 437 ~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 513 (820)
.........++...|..+...+.+.|+.++|...++.+++... .|..+.+.++.++...|+.+++.++++... +.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 7654222334444555555666667777777777777666542 245566666666766676666555554443 345
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
...|..+..+|...|++++|+..|++.... .| |..+...+..++...|+.++|.++.....
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 555666666666666777777776666663 34 44455566666666666666666665443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.8e-10 Score=110.86 Aligned_cols=268 Identities=13% Similarity=0.145 Sum_probs=126.2
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcC
Q 003439 318 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV--SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 395 (820)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g 395 (820)
..|.++|+++.|+++++-..+..-+.-...-+ +++.-+..-.++..|.+.-+..+... ..+....+.-.+.-...|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecC
Confidence 44677888888888877776543222111111 22222222334445555544443332 111111111111222346
Q ss_pred CHHHHHHHHhcCCCCCchHHHHHH---HHHHHcCChHHHHHHHHhhhhcCCCC-CCcccHhhHHHHhhccCChhHHHHHH
Q 003439 396 IINSACAVFEGLPVKDVISWNTLI---TGYAQNGLASEAIEVFQMMEECNEIN-PNQGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
++++|.+.+++....|...-.+|. ..+-..|+.++|++.|-++.. +- -+...+..+.+.|....+..+|.+++
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~---il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA---ILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 666666666666555544333322 234445666666666665532 22 23334444455555555555665555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003439 472 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548 (820)
Q Consensus 472 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 548 (820)
...... ++.|+.+.+.|.+.|-+.|+-..|.+..-+-- +.++.+..-|..-|....-+++|+..|++..- ++|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 444332 33455566666666666666655555432211 33333333344444444555555555555444 4555
Q ss_pred hhHHHHHHHHH-HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 549 HITFVSLLTAC-SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 549 ~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
..-|..++..| .+.|++..|.++++...+ .++.+......|+...
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~ 704 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHh
Confidence 55555444433 334555555555555443 2333444444444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=107.20 Aligned_cols=261 Identities=10% Similarity=0.023 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 492 (820)
...-.-..-+...+++.+..++++...+..+ +....+..-|..+...|+-.+-..+-..+++. .+....+|-++.--
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3333444455566777777777777766222 23333333444555666655554444444443 33456677778777
Q ss_pred HHhcCCHHHHHHHHhhCCCCC---ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVPRSS---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 569 (820)
|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|...++.+-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999998776333 345999999999999999999999888773 2223344555666788899999999
Q ss_pred HHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 003439 570 RYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP--------VRP-DASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 570 ~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
++|.+.. ++.| |+.+.+-+.-+....+.+.+|...|+..- ..+ -..+|+.|..+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9998776 6777 45667777777777889999999887651 111 234688899999999999999999
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+++++.+.|.++.+|..++-+|...|+++.|...+.+....
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=89.02 Aligned_cols=50 Identities=32% Similarity=0.594 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhc
Q 003439 207 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 256 (820)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (820)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-09 Score=113.57 Aligned_cols=169 Identities=14% Similarity=0.175 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hh-HHHHHHHHHHh
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HI-TFVSLLTACSH 561 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~ll~a~~~ 561 (820)
.+++.|..+|.+.|++++|...+ +.|++++++ ..|..+. .. -++.+...|..
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEK--LLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHH--hhccChHHHHHHHHHHHHHHHH
Confidence 45666777899999999999887 577888887 3333333 32 46667778999
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPD-ASIWGALLG 625 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~ 625 (820)
.+.+++|..+++...+.+. +.++ ..+++.|..+|...|+++||.++++++ ...+. ...++.|..
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 9999999999987766543 2222 367999999999999999999999877 11232 447788999
Q ss_pred HHHhcCChhHHHHHHHHHhc----cCCCC---cchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 626 ACRIHGNMELGAVASDRLFE----VDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+|.+.++.++|.++|++... ..|++ ..+|..|+-+|.+.|++++|.++-+...
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999999987654 34544 4467789999999999999999887775
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=109.70 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=162.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566778888889999999999998765 3345567888889999999999999999998853 2344577778888
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 636 (820)
+...|++++|.+.++..............+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998754222234456777889999999999999999887 3344 456888899999999999999
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...++++++..|+++..+..++.++...|++++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999988877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-06 Score=89.15 Aligned_cols=276 Identities=10% Similarity=0.119 Sum_probs=165.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhcCCCCCc-------hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhH
Q 003439 382 IIGNAVVDMYAKLGIINSACAVFEGLPVKDV-------ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI 454 (820)
Q Consensus 382 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 454 (820)
..+..+...|-..|+++.|+.+|+....-+- ..|-.-...=.+..+++.|+++.+.... .|....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~----vP~~~~---- 459 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH----VPTNPE---- 459 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc----CCCchh----
Confidence 4677889999999999999999998765432 2344444555567778888888776543 232211
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHH---HHHHhcCChH
Q 003439 455 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAII---SCHGIHGQGD 531 (820)
Q Consensus 455 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~ 531 (820)
+ .+.+.+..-+++ + ..+..+|+..++.--..|-++....+++++..--+.|=..++ .-+-.|.-++
T Consensus 460 ~-~~yd~~~pvQ~r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 460 L-EYYDNSEPVQAR-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred h-hhhcCCCcHHHH-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHH
Confidence 1 112222211111 1 124556677777777777777777777777644333322221 1234566677
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHHh---cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH----HcCCHHH
Q 003439 532 KALNFFRQMLDEGVRPDHI-TFVSLLTACSH---SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG----RAGHLGM 603 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~----~~g~~~e 603 (820)
++.++|++-+..=-.|+.. .|+..|.-+.+ .-.++.|..+|++..+ |.+|.- .-++--+|+ +-|....
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~--aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEH--AKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHH--HHHHHHHHHHHHHHhhHHHH
Confidence 7877777666543344543 55555544332 3367888888888774 554432 222222333 4577777
Q ss_pred HHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH--HhHHHHhhhcCCcchHHHHHHHH
Q 003439 604 AHNFIQNMP--VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY--VLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 604 A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
|++++++.. .++. ...||..|.--...=-+...+.+|+++++.-|++..-- ...+++-.+.|..+.|+.++.--
T Consensus 605 amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 605 AMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 888888772 3332 23677766543333234556778888888877654432 34678888889999998888776
Q ss_pred HhC
Q 003439 678 RDR 680 (820)
Q Consensus 678 ~~~ 680 (820)
.+.
T Consensus 685 sq~ 687 (835)
T KOG2047|consen 685 SQI 687 (835)
T ss_pred hhc
Confidence 554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-08 Score=98.01 Aligned_cols=305 Identities=14% Similarity=0.151 Sum_probs=147.3
Q ss_pred CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHH
Q 003439 323 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 402 (820)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~ 402 (820)
+.++++|.++|-+|.+. |..|| .+.-+|.+.|.+.|.+|.|.+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~---------------------------------e~~ltLGnLfRsRGEvDRAIR 90 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETF---------------------------------EAHLTLGNLFRSRGEVDRAIR 90 (389)
T ss_pred hcCcchHHHHHHHHHhc----Cchhh---------------------------------HHHHHHHHHHHhcchHHHHHH
Confidence 57889999999999763 22222 222344444555555555555
Q ss_pred HHhcCCCCCch-------HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHH
Q 003439 403 VFEGLPVKDVI-------SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVI 475 (820)
Q Consensus 403 ~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 475 (820)
+-+.+.++... ..-.|..-|...|-++.|..+|..+.+ .+. --......++..|....++++|.++-..+.
T Consensus 91 iHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d-e~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 91 IHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD-EGE-FAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc-chh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54444322111 223345556667777777777777655 221 111233445556666666666666666666
Q ss_pred HhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-
Q 003439 476 KNCLCFDV----FVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI- 550 (820)
Q Consensus 476 ~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~- 550 (820)
+.+-.+.. ..|.-|...+... .+.++|..++.+..+. .|+.+
T Consensus 169 k~~~q~~~~eIAqfyCELAq~~~~~-------------------------------~~~d~A~~~l~kAlqa--~~~cvR 215 (389)
T COG2956 169 KLGGQTYRVEIAQFYCELAQQALAS-------------------------------SDVDRARELLKKALQA--DKKCVR 215 (389)
T ss_pred HcCCccchhHHHHHHHHHHHHHhhh-------------------------------hhHHHHHHHHHHHHhh--Ccccee
Confidence 65433321 1223333333333 4444555555555442 33332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRI 629 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~ 629 (820)
.=..+.......|+++.|.+.++.+.+. +..--.++...|..+|...|+.++...++.++ ...+....-..+...-..
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~ 294 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIEL 294 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 1122333444555555555555544433 22222334444555555555555555555443 222232222233332222
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHh--hhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEE
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIY--ANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIF 700 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 700 (820)
+.-.+.|.....+-+.-.|.--+.|..+---. +.-|++.+-....+.|....++..|.+.--.-+-..|.|
T Consensus 295 ~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 295 QEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 33334444444444445553333333222111 233557777777888887777776655444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-11 Score=86.33 Aligned_cols=50 Identities=30% Similarity=0.475 Sum_probs=48.1
Q ss_pred CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 003439 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ 357 (820)
Q Consensus 308 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 357 (820)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-07 Score=96.59 Aligned_cols=217 Identities=10% Similarity=0.061 Sum_probs=170.7
Q ss_pred HHHcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003439 422 YAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRID 500 (820)
Q Consensus 422 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 500 (820)
+.-.|+...|.+.|+.... +.|-... |.-+-.+|....+.++..+.|..+.+.+.. ++.+|..-..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~---l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIK---LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHh---cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 4456889999999999988 4443333 767777899999999999999999887643 5667777788888889999
Q ss_pred HHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 501 DAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 501 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
+|..=|++.. +.++.+|-.+..+.-+.++++++...|++.++. ++--...|+.....+...+++++|.+.|+...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999877 445666777777777888999999999999985 333456899999999999999999999998873
Q ss_pred hhCCCCC---------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 578 EFGIKPH---------LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 578 ~~g~~p~---------~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
+.|+ +.+--+++-+-. .+++.+|.+++++. .+.|. ...+-+|...-.+.|+.++|+++|++...+
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4454 112222222222 38999999999987 66665 458999999999999999999999988765
Q ss_pred C
Q 003439 647 D 647 (820)
Q Consensus 647 ~ 647 (820)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-06 Score=91.15 Aligned_cols=468 Identities=14% Similarity=0.175 Sum_probs=271.0
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCCC-CCcccHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhh
Q 003439 181 AASLLHMYCRFGLANVARKLFDDMPV-RDSGSWNAM-----ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 254 (820)
Q Consensus 181 ~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 254 (820)
+..+.+.+.+.|-...|++.+.++.. +-++..+.+ +-.|.-.-.++++++.++.|...+++.|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56667788899999999999887752 111222222 234556667899999999999998888888777776666
Q ss_pred hcCCChHHHHHHHHHHHH-----------hCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC----------------
Q 003439 255 ARSDNILSGLLIHLYIVK-----------HGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---------------- 307 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------- 307 (820)
...-..+.-.++|+.... .++..|+.+.-..|.+.++.|++.+.+++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 555444555555544322 12455666777789999999999999988765411
Q ss_pred ---------------CCchHH------HHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcch-------------HHHHHH
Q 003439 308 ---------------RDVVSW------NSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLT-------------LVSLTS 353 (820)
Q Consensus 308 ---------------~d~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-------------~~~ll~ 353 (820)
+|.+.| .-.|..|++.=++...-.+.-.+.+. .-+... ...+..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCChHHHHH
Confidence 122221 12345555543333322222222111 001111 111222
Q ss_pred HHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcC--------------------------------------
Q 003439 354 IVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG-------------------------------------- 395 (820)
Q Consensus 354 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g-------------------------------------- 395 (820)
-+.+.+.+..-...++..+..| ..|..++|+|...|....
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 2233333333333444444444 345555555555554322
Q ss_pred --------------------------CHHHHHHHHhcC----------------C-CCCchHHHHHHHHHHHcCChHHHH
Q 003439 396 --------------------------IINSACAVFEGL----------------P-VKDVISWNTLITGYAQNGLASEAI 432 (820)
Q Consensus 396 --------------------------~~~~A~~~f~~~----------------~-~~~~~~~~~li~~~~~~g~~~~A~ 432 (820)
+.+--.+++.+- + ..|+..-+..+.++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 221111111100 0 113333445566677777777777
Q ss_pred HHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhC-----------------------CCCchhHHHHH
Q 003439 433 EVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-----------------------LCFDVFVATCL 489 (820)
Q Consensus 433 ~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----------------------~~~~~~~~~~l 489 (820)
++++++.-....-.....+..++-.-+-..+.....++.+++-... +..+....+.|
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 7777765311111111111112111111122222222222221111 11122222222
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 569 (820)
|+ ..+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+ .-|...|..++.++++.|.|++-.
T Consensus 1085 ie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHH
Confidence 21 22344444444444333 33599999999999999999987733 235568999999999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+++....++ .-+|..+ +.|+-+|++.+++.|-++++. -||..-......-|...|.++.|.-+|.
T Consensus 1154 ~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 999655543 5666544 679999999999999988873 4787778889999999999999999887
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+.+.|..|+..+...|.+..|...-+++.
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56678888888888888888776555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-08 Score=94.03 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=162.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCc---cHHHHHHHHHHHHccCCHHHH
Q 003439 222 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEF---NLFVSNNLINMYAKFGMMRHA 298 (820)
Q Consensus 222 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 298 (820)
+.+.++|+++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..+.++.--+ -....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888999999987631 1122344456677788888888888888887653111 133455667778888888888
Q ss_pred HHHHhccCCCCc---hHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhC
Q 003439 299 LRVFDQMMERDV---VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 375 (820)
Q Consensus 299 ~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 375 (820)
+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.|-++..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 888888876433 34556788888888888888888887765544332211
Q ss_pred CcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhH-
Q 003439 376 WFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSI- 454 (820)
Q Consensus 376 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l- 454 (820)
.. .|.-+...+....+.+.|..++.+..+ ..|+.+--+.+
T Consensus 180 ------------Aq------------------------fyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~l 220 (389)
T COG2956 180 ------------AQ------------------------FYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIIL 220 (389)
T ss_pred ------------HH------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhh
Confidence 11 122233333334455556666655544 33443333322
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHH
Q 003439 455 LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDK 532 (820)
Q Consensus 455 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 532 (820)
-+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++. .++...-+.+...-....-.+.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHH
Confidence 23345555666666666665555544445555666666666666666666655544 2233333333333333333444
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHHhH
Q 003439 533 ALNFFRQMLDEGVRPDHITFVSLLTACSH---SGLVSEGQRYFHMMQ 576 (820)
Q Consensus 533 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~ 576 (820)
|...+.+-+. -+|+...|..++..-.. .|...+-...++.|.
T Consensus 301 Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 301 AQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 4444444444 26777766666664432 233444455555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-07 Score=95.25 Aligned_cols=493 Identities=12% Similarity=0.053 Sum_probs=233.2
Q ss_pred cHHHHHHhhc---ChHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChHHHHHHhc--ccCCCCcchHHHHHHHHHhC
Q 003439 49 DFDDLFQSCT---KLHHVKRLHALLVVSGKIKTVFSSTKLVNFYANLGDLSFSRHTFD--HISYRNVYTWNSMISVYVRC 123 (820)
Q Consensus 49 ~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~ 123 (820)
-+..+++-|. ....+.-+-+.+...+ .|+..---+..+|.-.|.+..|..+.. .+.+.|..+.......+.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555443 3333444444444334 455555557777777788888877765 45677888888888999999
Q ss_pred CCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc-hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhc
Q 003439 124 GRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD-GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFD 202 (820)
Q Consensus 124 g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 202 (820)
.++++|+.++.. - .+.-+.+.|-..=.++.-..+ +...+..-.+.++ +-.--..|......++|+..|.
T Consensus 96 k~~~~al~vl~~-~---~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 96 KEWDQALLVLGR-G---HVETNPFSYYEKDAANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHhcc-c---chhhcchhhcchhhhceeccCcccccccccchhce------eeeeeehhhhhccHHHHHHHHH
Confidence 999999887763 0 111111111100000000000 1100000011110 0000122333455677777776
Q ss_pred cCCCCCcccHHHHHHHHHhCC-ChhHHHHHHHHHHHC-CCCCChHHHHhHHHhh-hcCCChHHHHHHHHHHHHhCCCccH
Q 003439 203 DMPVRDSGSWNAMISGYCQSG-NAVEALDILDEMRLE-GVSMDPITVASILPVC-ARSDNILSGLLIHLYIVKHGLEFNL 279 (820)
Q Consensus 203 ~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~ 279 (820)
+....|+..+.++...-...= -..+-.++|+...-. -.+-+....-.+.... ++..+.+.. ..-....-.|...++
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~-~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL-TRNEDESLIGLAENL 244 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc-ccCchhhhhhhhhcH
Confidence 666666666555443221111 011222222211000 0001111111111111 000000000 000000001112223
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 003439 280 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359 (820)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 359 (820)
.+..... .-+...+++.+.+++++...+. .++....+..=|..+...|
T Consensus 245 dll~~~a-------------------------------d~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~ 292 (611)
T KOG1173|consen 245 DLLAEKA-------------------------------DRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELG 292 (611)
T ss_pred HHHHHHH-------------------------------HHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhc
Confidence 3333333 3344445555555555554433 1222222222233333444
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHH
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQ 436 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 436 (820)
+...-..+-..+++. .|.....|-++.-.|.-.|..++|++.|.....- =...|-.....|+-.|..++|+..+.
T Consensus 293 ~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred ccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence 433333333333333 5777788888888888888889999888765433 34578888888888898898888877
Q ss_pred hhhhcCCCCCCcc-cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc
Q 003439 437 MMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSV 515 (820)
Q Consensus 437 ~m~~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 515 (820)
..-+ .-|... -+.-+---|.+.++++.|.+++..+.... +.|+.+.+-
T Consensus 371 tAar---l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~E--------------------------- 419 (611)
T KOG1173|consen 371 TAAR---LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHE--------------------------- 419 (611)
T ss_pred HHHH---hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhh---------------------------
Confidence 6654 222211 11112222444555555555555544432 223444444
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHc--CC---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDE--GV---RP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 589 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 589 (820)
+.....+.+.+.+|..+|+..++. .+ .+ -..+++.|..+|.+.+.+++|+..++.... -.+.+..++.
T Consensus 420 ----lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~a 493 (611)
T KOG1173|consen 420 ----LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHA 493 (611)
T ss_pred ----hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHH
Confidence 444444445555555555554421 00 11 233566666666666666666666666553 2233455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLG 625 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~ 625 (820)
++.-.|...|+++.|.+.|.+. .++||..+-..++.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 6666666666666666666554 45555554444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-07 Score=93.23 Aligned_cols=305 Identities=8% Similarity=-0.009 Sum_probs=196.9
Q ss_pred CCCcchHHHHHHHHHh--cCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHH-
Q 003439 342 QPDLLTLVSLTSIVAQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTL- 418 (820)
Q Consensus 342 ~pd~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l- 418 (820)
.|...+...-+.+++. .++-..+.+.+..+.+...++.++....++.+.|...|+.++|...|++...-|..+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444445555443 3444455555555555554778888888888999999999999998887665554443332
Q ss_pred --HHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003439 419 --ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 496 (820)
Q Consensus 419 --i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 496 (820)
.--+.+.|+++....+...+.. . .+-....+..-.......++++.|..+-+..++.... ++..+-.-..++...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~-~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFA-K-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHh-h-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 2334567888877777777654 1 1111222222223334556777777777766664322 233333334556677
Q ss_pred CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHH-hcCCHHHHHHH
Q 003439 497 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL-TACS-HSGLVSEGQRY 571 (820)
Q Consensus 497 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 571 (820)
|+.++|.-.|+... +-+..+|.-|+.+|...|.+.+|.-+-+..... +..+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 88888888887655 457778888888888888888888877766653 333444554442 2332 22334677777
Q ss_pred HHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 572 FHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 572 ~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+++-. .+.|+- ...+.+..++.+.|+.+++..++++. ...||....+.|....+..+.+++|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 76554 455652 45566777788888888888888876 56678888888888888888888888888888888887
Q ss_pred Ccch
Q 003439 650 NVGY 653 (820)
Q Consensus 650 ~~~~ 653 (820)
+..+
T Consensus 504 ~~~s 507 (564)
T KOG1174|consen 504 SKRT 507 (564)
T ss_pred chHH
Confidence 6543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-07 Score=95.48 Aligned_cols=279 Identities=12% Similarity=0.070 Sum_probs=166.1
Q ss_pred CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHH
Q 003439 323 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 402 (820)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~ 402 (820)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.....+.+.. -.++..+.-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 466666666666655544333 2234444455556666666666666665553 34555666666777777777777776
Q ss_pred HHhc---CCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-------ccHhhHHHHhhccCChhHHHHHHH
Q 003439 403 VFEG---LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-------GTYVSILPAYSHVGALRQGIKIHA 472 (820)
Q Consensus 403 ~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-------~t~~~ll~a~~~~~~~~~a~~i~~ 472 (820)
-.++ |..++..........|.+.|++.+...++.+|.+ .|+--|+ .++..+++-+...+..+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~g------ 247 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEG------ 247 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 6554 3355677777888888888888888888888887 6654443 233344443333333333
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003439 473 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH 549 (820)
Q Consensus 473 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 549 (820)
-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+-
T Consensus 248 -----------------------------L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 248 -----------------------------LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred -----------------------------HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 333333333 223333344444455555555666666666655555551
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACR 628 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~ 628 (820)
..+-.+.+-++...-++..+.-...++..| ..+.+|..+|.+.+.+.+|.+.|+.. +..|+...|+-+..++.
T Consensus 299 ----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 299 ----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred ----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 122234455555555555555555545555 45666777777777777777777755 56677777777777777
Q ss_pred hcCChhHHHHHHHHHhc
Q 003439 629 IHGNMELGAVASDRLFE 645 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~ 645 (820)
+.|+.++|.+..++.+-
T Consensus 373 ~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 373 QLGEPEEAEQVRREALL 389 (400)
T ss_pred HcCChHHHHHHHHHHHH
Confidence 77777777777776653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.7e-07 Score=94.45 Aligned_cols=431 Identities=13% Similarity=0.110 Sum_probs=243.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHH--HHHHHH--cc
Q 003439 217 SGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNN--LINMYA--KF 292 (820)
Q Consensus 217 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~ 292 (820)
+-+..+|++++|+....+....+ +-|...+..-+-+..+.+.++.|..+... .+. ..+++. +=.+|| +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 44455566666666666655443 22333444445555555666655533221 111 111111 233443 67
Q ss_pred CCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCcchhhhhHHHHH
Q 003439 293 GMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD-LLTLVSLTSIVAQLNDCRNSRSVHGFI 371 (820)
Q Consensus 293 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~ 371 (820)
+..|+|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-+... ...
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~---------~~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ---------VQL 163 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh---------HHH
Confidence 8888888888866555655666666778888999999999999876654322 112222222221111 101
Q ss_pred HHhCCcCc--chhHHhHHHHHHHhcCCHHHHHHHHhcC--------CCCCc-----hH-----HHHHHHHHHHcCChHHH
Q 003439 372 MRRGWFME--DVIIGNAVVDMYAKLGIINSACAVFEGL--------PVKDV-----IS-----WNTLITGYAQNGLASEA 431 (820)
Q Consensus 372 ~~~g~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~-----~~-----~~~li~~~~~~g~~~~A 431 (820)
.+.-...+ +-..+-.....+...|++.+|+++++.. .+.|. .. ---|.-.+...|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11110111 1112222334566788999999888765 21111 11 11233456678999999
Q ss_pred HHHHHhhhhcCCCCCCcccHhhH---HHHhhccCChhH--HHHH------------HHHHHHhCCCCchhHHHHHHHHHH
Q 003439 432 IEVFQMMEECNEINPNQGTYVSI---LPAYSHVGALRQ--GIKI------------HARVIKNCLCFDVFVATCLVDMYG 494 (820)
Q Consensus 432 ~~l~~~m~~~~g~~pd~~t~~~l---l~a~~~~~~~~~--a~~i------------~~~~~~~g~~~~~~~~~~li~~y~ 494 (820)
..++....+ . ..+|....... |.+...-.++-. .... ...+.+ .......--+.++.+|.
T Consensus 244 ~~iy~~~i~-~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 244 SSIYVDIIK-R-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHH-h-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 999998876 2 34454222111 112222222211 1111 111111 11112233355666665
Q ss_pred hcCCHHHHHHHHhhCCCCC-ccccchHHHHH--HhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHH
Q 003439 495 KCGRIDDAMSLFYQVPRSS-SVPWNAIISCH--GIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~ 569 (820)
+..+.+.++....+... ...+.+++... .+...+.+|.+++...-+. .|.. +.....+......|+++.|.
T Consensus 321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 45677777777776333 23344444433 2233577888888877664 4544 34455566678899999999
Q ss_pred HHHH--------HhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCC
Q 003439 570 RYFH--------MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD-ASIWGALLGACRIHGN 632 (820)
Q Consensus 570 ~~~~--------~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~ 632 (820)
+++. .+. .+.-.+.+..+++.+|.+.++-+-|.+++.+. ..++. ..+|.-+...-.++|+
T Consensus 397 ~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9998 443 23334456788899999988777666666544 22222 2244455555568899
Q ss_pred hhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHH
Q 003439 633 MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
-++|...++++++..|++....+.++-+|++.. .+.|..+-
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 999999999999999999999999999888763 45555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=116.02 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=176.5
Q ss_pred ChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhh---------ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003439 427 LASEAIEVFQMMEECNEINPNQGT-YVSILPAYS---------HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 496 (820)
Q Consensus 427 ~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 496 (820)
..++|+++|++..+ ..|+... +..+..++. ..++.++|...++.+++... .+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 45788888888876 6676543 222222222 23457888999988888653 3667788888889999
Q ss_pred CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHH
Q 003439 497 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 497 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
|++++|...|++.. +.+...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++|.+.+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999876 33455688888999999999999999999999 567653 3334455567789999999999
Q ss_pred HHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 573 HMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 573 ~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+++... ..| +...+..+..+|...|+.++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 887753 234 3455777888999999999999999987 4455544 5666666777777 4788878877664332
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 333333377788888998888777 666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-07 Score=98.36 Aligned_cols=462 Identities=16% Similarity=0.154 Sum_probs=245.5
Q ss_pred ccCChHHHHHHhcccCC-CCcc-hHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHHH
Q 003439 91 NLGDLSFSRHTFDHISY-RNVY-TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCS 168 (820)
Q Consensus 91 ~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 168 (820)
..|+++.|...++.... |+.. .|-.+...-...|+.--|.+.|.. +- -.+ .++.+|+.
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa-i~----------------dva---k~r~lhd~ 515 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA-IG----------------DVA---KARFLHDI 515 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH-HH----------------HHH---HHHHHHHH
Confidence 45778888887776542 5543 466666666667777666666654 11 000 03334433
Q ss_pred HH-------HhC-CCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 003439 169 VL-------KLG-FEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGV 240 (820)
Q Consensus 169 ~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 240 (820)
.. +.| -..|-+-..+++.++.+ ++.+|..+|-+-. .-...|..|....++++|+.+-+.. |.
T Consensus 516 ~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~ 585 (1636)
T KOG3616|consen 516 LEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GH 585 (1636)
T ss_pred HHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CC
Confidence 21 222 23344444555555543 5778888874321 1234566666777777777764332 22
Q ss_pred CCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhc--cCCCCchHHHHHHH
Q 003439 241 SMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQ--MMERDVVSWNSIIA 318 (820)
Q Consensus 241 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--m~~~d~~~~~~li~ 318 (820)
+.-...-.+.++++...|+-+.|-++- .+.--.-+-|..|.+.|....|.+.-.. ....|......+..
T Consensus 586 p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~ 656 (1636)
T KOG3616|consen 586 PALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAA 656 (1636)
T ss_pred hHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHH
Confidence 211122233445555555554443321 1111123457788888888777665432 12234444555555
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhH-HhHHHHHHHhcCCH
Q 003439 319 AYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVII-GNAVVDMYAKLGII 397 (820)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~~li~~y~~~g~~ 397 (820)
++.+..-+++|-++|+++.. +...+..+.+-..+..|.++-... +|..++. -.+-..-+...|++
T Consensus 657 alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 657 ALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhH
Confidence 66666666666666666532 112222232323333444433322 2322221 12233444566777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHh
Q 003439 398 NSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 398 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 477 (820)
+.|...|-+.. ..-.-|.+-.....+.+|+.+++.++. +. .-..-|..+..-|+..|+++.|.++|.+.
T Consensus 723 daainhfiea~-----~~~kaieaai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 723 DAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 77777664421 111234455666778888888887766 22 23334556667778888888887776532
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003439 478 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS--SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 555 (820)
Q Consensus 478 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 555 (820)
..++--|+||++.|+|++|.++-++...|. +..|-+-..-.-.+|++.+|.++|-... .|+. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 234556778888888888877777665433 2335555555566677777766653321 2432 3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 635 (820)
|..|-+.|..+..+++.++-. | ..-..+.-.+..-|-..|++.+|.+-|-+.+ -|.+-++.|...+-+++
T Consensus 857 iqmydk~~~~ddmirlv~k~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHH
Confidence 445666666666666554221 1 1111233344555666677777776665543 25555666666666665
Q ss_pred HHHHHH
Q 003439 636 GAVASD 641 (820)
Q Consensus 636 a~~~~~ 641 (820)
|-++.+
T Consensus 927 ayriak 932 (1636)
T KOG3616|consen 927 AYRIAK 932 (1636)
T ss_pred HHHHHh
Confidence 555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-07 Score=89.41 Aligned_cols=412 Identities=13% Similarity=0.138 Sum_probs=220.6
Q ss_pred HHhhcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHH
Q 003439 186 HMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILS 262 (820)
Q Consensus 186 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (820)
..|-+.|++++|..++.-+. .++...|--|.-.+.-.|.+.+|..+-.... -++-.-..++...-+.++-++
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHH
Confidence 34556778888877776544 2445556666666666677777766644432 122233334444456666666
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCchHHHH-HHHHHHhCCChhhHHHHHHHHHHc
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNS-IIAAYEQSNDPITAHGFFTTMQQA 339 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 339 (820)
-.++|+.+... ..-.-+|..+.-..-.+.+|..++.++.. |+-...|. |.-+|.+..-++-+.++++--.+.
T Consensus 140 ~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 140 ILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 66666655432 12223344444444556777777777655 33334443 334556666666666666555443
Q ss_pred CCCCCcchHHHHHHHHHhcC--cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHH
Q 003439 340 GIQPDLLTLVSLTSIVAQLN--DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNT 417 (820)
Q Consensus 340 g~~pd~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 417 (820)
-||+ |+..=+.+|..-. +-..+.+-...+.+.+ -.. -..+.-.++. |.+.
T Consensus 215 --~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~-----~~f~~~l~rH----------------NLVv--- 266 (557)
T KOG3785|consen 215 --FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNI-DQE-----YPFIEYLCRH----------------NLVV--- 266 (557)
T ss_pred --CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcc-ccc-----chhHHHHHHc----------------CeEE---
Confidence 2332 2333333332211 1111222222222221 000 0011111111 1110
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchh-----HHHHHHHH
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVF-----VATCLVDM 492 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-----~~~~li~~ 492 (820)
-...+.|++++-.+.+ +-|... ..++-.+.+.+++.+|..+...+.- ..|... +..++.+-
T Consensus 267 -------FrngEgALqVLP~L~~---~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 267 -------FRNGEGALQVLPSLMK---HIPEAR--LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQE 332 (557)
T ss_pred -------EeCCccHHHhchHHHh---hChHhh--hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhh
Confidence 0122444444443333 233221 1222234445555554444332210 011111 12222222
Q ss_pred HHhcCCHHHHHHHHhhCC----CCCccc-cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003439 493 YGKCGRIDDAMSLFYQVP----RSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSE 567 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~----~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 567 (820)
.+....+.-|.+.|.-.. .-|.++ -.+|.+.+.-..++++.+..+.....- +..|..--..+..|.+..|++.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHH
Confidence 223334566777776544 233333 667888888888899999988888775 33333333457889999999999
Q ss_pred HHHHHHHhHHhhCCC-CChhHHHH-HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHh
Q 003439 568 GQRYFHMMQEEFGIK-PHLKHYGC-MVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALL-GACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 568 a~~~~~~m~~~~g~~-p~~~~~~~-li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~ 644 (820)
|.++|-.+. |.+ .|..+|.. |...|.++|+.+-|.+++-++..+.+..+...+| +-|.+.+.+--|-++|+.+.
T Consensus 412 aEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999997665 333 34556654 5678999999999999999986444555544444 56999999999999999999
Q ss_pred ccCCCCcchH
Q 003439 645 EVDSENVGYY 654 (820)
Q Consensus 645 ~~~p~~~~~~ 654 (820)
.++| +++.|
T Consensus 489 ~lDP-~pEnW 497 (557)
T KOG3785|consen 489 ILDP-TPENW 497 (557)
T ss_pred ccCC-Ccccc
Confidence 9998 45544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=94.78 Aligned_cols=285 Identities=13% Similarity=0.024 Sum_probs=169.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 003439 222 SGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRV 301 (820)
Q Consensus 222 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (820)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.+..++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554332 2334444555566677777777777777664466777777777888888888888777
Q ss_pred HhccC---CCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcC
Q 003439 302 FDQMM---ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 378 (820)
Q Consensus 302 f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 378 (820)
.+.+. .++..........|.+.|++.+...++.+|.+.|+--|...- .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------------------~ 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------------------R 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------------------H
Confidence 66553 357778888889999999999999999999888765443211 0
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH
Q 003439 379 EDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL 455 (820)
Q Consensus 379 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 455 (820)
....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+ .+..|.. ..+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRL 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHH
Confidence 1112233333333333334444445555552 2455555666677777777777777777766 5555551 122
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHH
Q 003439 456 PAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKA 533 (820)
Q Consensus 456 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 533 (820)
-.+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|.+.|+... +++...|+-+..+|.+.|+..+|
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 23445555555544444443321 1233555666666666666666666665433 44444455555555555555555
Q ss_pred HHHHHHHHH
Q 003439 534 LNFFRQMLD 542 (820)
Q Consensus 534 ~~l~~~m~~ 542 (820)
.+.+++.+.
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-06 Score=89.05 Aligned_cols=458 Identities=13% Similarity=0.109 Sum_probs=254.7
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHhccCCC-----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHH
Q 003439 178 VFVAASLLHMYCRFGLANVARKLFDDMPV-----RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILP 252 (820)
Q Consensus 178 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 252 (820)
+.+|-.-+....+.|++..-++.|++... .....|...|.-.-+.|-++-++.++++..+. ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 45677777888889999999999987542 24457999999999999999999999998764 3333556677
Q ss_pred hhhcCCChHHHHHHHHHHHHhC------CCccHHHHHHHHHHHHccCCHH---HHHHHHhccCCC--Cc--hHHHHHHHH
Q 003439 253 VCARSDNILSGLLIHLYIVKHG------LEFNLFVSNNLINMYAKFGMMR---HALRVFDQMMER--DV--VSWNSIIAA 319 (820)
Q Consensus 253 a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~m~~~--d~--~~~~~li~~ 319 (820)
-++..+++++|.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ |. ..|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7788999999999988875432 3556777888887777664432 344556665543 33 479999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHH
Q 003439 320 YEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 399 (820)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 399 (820)
|.+.|.+++|.++|++.... .....-|+.+..+|+.-.....+..+- .....+.-+.+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHH
Confidence 99999999999999998764 233445666777776544322222221 1111110111111 1222
Q ss_pred HHHHHhcCC---------------CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc------cHhhHHHHh
Q 003439 400 ACAVFEGLP---------------VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG------TYVSILPAY 458 (820)
Q Consensus 400 A~~~f~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~------t~~~ll~a~ 458 (820)
...-|+.+. ..++..|..-... ..|+..+-...|.+..+ .+.|-.. .+..+..-|
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHH
Confidence 222232222 1244455444332 35666677777776654 3444332 234444555
Q ss_pred hccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCccccchHHHHHHhcCChHHH
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFD---VFVATCLVDMYGKCGRIDDAMSLFYQVP--RSSSVPWNAIISCHGIHGQGDKA 533 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 533 (820)
-..|+++.|+.+|+...+-.++.- ..+|..-.++=.+..+++.|.++.++.. +.+.. ..+..++.+.++
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------LEYYDNSEPVQA 471 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------hhhhcCCCcHHH
Confidence 556666666666666655433221 2344444444455555555555555443 11100 111111111111
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 003439 534 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P 612 (820)
Q Consensus 534 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 612 (820)
. + .-+...|...+..-...|-++....+++.+..-.-..|.. .-...-.+-...-++++.+.+++- +
T Consensus 472 r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 472 R-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred H-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 0 0 0011223344444444556666666666666432233332 112222344455667777777664 2
Q ss_pred -C-CCCHH-HHHHHHHHHHh-c--CChhHHHHHHHHHhccCCCCc--chHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 613 -V-RPDAS-IWGALLGACRI-H--GNMELGAVASDRLFEVDSENV--GYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 613 -~-~p~~~-~~~~ll~~~~~-~--g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+ -|+.. +|++.+.-..+ . ..++.|+.+|+++++.-|... +.|.+.+..-.+-|.-..|..+++++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 24444 77776655432 2 256777777777777665321 12333444444445555666666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=98.43 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=155.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 495 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 495 (820)
+.|...|.+.|.+.+|.+.|+.-.+ ..|-..||..+-.+|.+..+++.|..++..-++. ++-++....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 4455666677777777776666555 3455556666666666666666666666555543 22233333344455555
Q ss_pred cCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 496 CGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
.++.++|.++++... ..++.....+..+|.-.++++-|+..|+++++.|+. +...|+.+.-+|...+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 666666766666554 334555566666777777777788888877777743 4556666666677777777666666
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 573 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 573 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
++.... | ..|+ ..+|-.|.......||+..|.+.|+-++.-+|++
T Consensus 382 ~RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 554421 1 1232 3377777777788899999999999999999999
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...++.|+-+-.+.|+.++|+.+++.+.+..
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999887653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-08 Score=103.83 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 559 (820)
..+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++.|++.++ +.|+. .++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 445666667778888888888777665 34556688888888888888888888888887 56754 4677777778
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. ...|+. |. ........|+..++
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-
Confidence 888888888888887764 3454332222223345567888888888654 223332 32 12223345555443
Q ss_pred HHHHHHh-------ccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 638 VASDRLF-------EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 638 ~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
..++.+. ++.|+....|..|+.+|...|++++|...+++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 3456666788888888888888888888888887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-06 Score=89.92 Aligned_cols=399 Identities=12% Similarity=0.070 Sum_probs=240.6
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHH
Q 003439 274 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVS 350 (820)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 350 (820)
.+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|..+.+.-....-.|+..+.-.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3566888999999999999999999999988754 3556799999999999999999999988765544455444433
Q ss_pred HHH-HHH-hcCcchhhhhHHHHHHHhCC-c--CcchhHHhHHHHHHHhc-----------CCHHHHHHHHhcCC-----C
Q 003439 351 LTS-IVA-QLNDCRNSRSVHGFIMRRGW-F--MEDVIIGNAVVDMYAKL-----------GIINSACAVFEGLP-----V 409 (820)
Q Consensus 351 ll~-a~~-~~~~~~~a~~i~~~~~~~g~-~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~-----~ 409 (820)
+.. .|. +.+..+++..+-..++.... . ......+-.+.-+|... ....++...+++.. +
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333 332 34566666666665555210 1 11223333333333321 11223334444332 2
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHH-hCCCCchhHHHH
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK-NCLCFDVFVATC 488 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~ 488 (820)
++++.| +---|+..++.+.|++..++..+ -+-.-+...+..+.-.++..+++..|..+.+.... .|........
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~-- 552 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALA-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG-- 552 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh--
Confidence 233333 23345666777888888877776 33334445555555566667777777777766543 2221110000
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC---C--CCccc---cchHH----HHHHhcCChHHHHHHHHH-----------------
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVP---R--SSSVP---WNAII----SCHGIHGQGDKALNFFRQ----------------- 539 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~---~--~~~~~---~~~li----~~~~~~g~~~~A~~l~~~----------------- 539 (820)
-+..-...++.++|......+. + +.+.. -..+. ......++..+|.+..++
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0111112333333333221111 0 00000 00000 000001111112111111
Q ss_pred HHHcCCCCChh--------HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 540 MLDEGVRPDHI--------TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 540 m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
|...-+.|+.. .|......+...+..++|...+.+.. ++.| ....|.-....+...|.++||.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111222221 24445567788889999987776665 4445 345667777888899999999999887
Q ss_pred C-CCCCCHH-HHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 611 M-PVRPDAS-IWGALLGACRIHGNMELGAV--ASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 611 m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
. .+.|+.+ +..++...+...|+...|.. ++..+++++|.++..|..|+.++.+.|+.++|.+-|+...+.
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6 6788765 88899999999999888888 999999999999999999999999999999999999988765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-08 Score=92.04 Aligned_cols=161 Identities=11% Similarity=0.052 Sum_probs=140.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDL 594 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~ 594 (820)
...|..+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 34567788999999999999999999 577764 89999999999999999999999887 45664 5788889999
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 595 FGRAGHLGMAHNFIQNMPVRP---D-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
++..|++++|...|++.-..| . ..+|..+...-.+.|+.+.|+..+++.++++|+.+.....+++...+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999883333 2 348888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003439 671 DEVRSLARDRGL 682 (820)
Q Consensus 671 ~~~~~~m~~~~~ 682 (820)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-08 Score=111.79 Aligned_cols=211 Identities=11% Similarity=-0.006 Sum_probs=163.0
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCC
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYG---------KCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ 529 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 529 (820)
+++++|.+.++.+++.... +...+..+..+|. ..+++++|...+++.. +.+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467888999988876432 3445555555443 2345889999998876 4456678888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHH
Q 003439 530 GDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 530 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~ 607 (820)
+++|+..|++.++ ..|+. ..+..+..++...|++++|...++...+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56765 4777888899999999999999999884 456532 333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 608 IQNMP--VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 608 ~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+++.- ..|+ ...+..+..++...|+.++|+..++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98862 2354 4467778888889999999999999998888988888888888888888 4788777776653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=95.63 Aligned_cols=198 Identities=14% Similarity=0.157 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
...+..+...|...|++++|.+.|++..+ ..|+ ...+..+...+...|+++.|.+.++...+... .+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE---HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 45677777888888888888888888766 2343 23334444555555666666666555554432 1233334444
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 569 (820)
..| ...|++++|.+.|++.......|. ...+..+..++...|++++|.
T Consensus 107 ~~~-------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 107 TFL-------------------------------CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHH-------------------------------HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 444 444555555555555544221121 223444455555666666666
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
+.+...... .+.+...+..+...+...|++++|.+.+++. .. +++...+..+...+...|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666555532 1112344555556666666666666666554 11 223344445555566666666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-05 Score=83.26 Aligned_cols=540 Identities=13% Similarity=0.151 Sum_probs=298.5
Q ss_pred hHHHHHHHHccCChHHHHHHhcccCC-CCcchHHH-----HHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHh
Q 003439 82 STKLVNFYANLGDLSFSRHTFDHISY-RNVYTWNS-----MISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKA 155 (820)
Q Consensus 82 ~~~ll~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~-----li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~ 155 (820)
+-.+.+.+.+.|-+..|.+.+..+.. ..++..+. -+..|.-.-.++++++.+.. |...+++-|..+...+-..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclka-ml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKA-MLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhhHHHHHHHHH
Confidence 55566778888888888888876642 11111111 12344445567888888888 6666666665443332222
Q ss_pred hcCCcchH---HHHHHHHH-----------hCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC--C-------------
Q 003439 156 CRNLVDGK---KIHCSVLK-----------LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP--V------------- 206 (820)
Q Consensus 156 ~~~~~~~~---~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~------------- 206 (820)
+...-.+. ++|+.... -.+..|+.+.-.-|.+-|+.|++.+.+++-++-. .
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 21111111 22222111 1356788888889999999999999888865542 0
Q ss_pred ----C-----------------------------------------------Cccc-----------------HHHHHHH
Q 003439 207 ----R-----------------------------------------------DSGS-----------------WNAMISG 218 (820)
Q Consensus 207 ----~-----------------------------------------------~~~~-----------------~~~li~~ 218 (820)
| |+.+ -+.|+.-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 0 1111 1111222
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHH----------HHHHHHHHHhCC----------Ccc
Q 003439 219 YCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSG----------LLIHLYIVKHGL----------EFN 278 (820)
Q Consensus 219 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a----------~~~~~~~~~~g~----------~~~ 278 (820)
.-+.++..--+..++...+.|.. |..|++++.+.|...++-.+- +.+=....+... ..|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 22333444444455555666654 788888888777654432111 001011111100 001
Q ss_pred H---------HHHHHHHHHHHccCC-----------HHHHHHHHhccC-----C-CCchHHHHHHHHHHhCCChhhHHHH
Q 003439 279 L---------FVSNNLINMYAKFGM-----------MRHALRVFDQMM-----E-RDVVSWNSIIAAYEQSNDPITAHGF 332 (820)
Q Consensus 279 ~---------~~~~~li~~y~~~g~-----------~~~A~~~f~~m~-----~-~d~~~~~~li~~~~~~g~~~~A~~~ 332 (820)
. ..+-.+.....+..+ -..-+.+.+... + .|+..-+.-+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 0 111111121222111 112234444432 2 4666666778889999999999999
Q ss_pred HHHHHHcCCCC-CcchHHHHHHHHH----------------------------hcCcchhhhhHHHHHHHhCCcCcchhH
Q 003439 333 FTTMQQAGIQP-DLLTLVSLTSIVA----------------------------QLNDCRNSRSVHGFIMRRGWFMEDVII 383 (820)
Q Consensus 333 ~~~m~~~g~~p-d~~t~~~ll~a~~----------------------------~~~~~~~a~~i~~~~~~~g~~~~~~~~ 383 (820)
+++..-..-.- ....+-.++-.-+ ..+-+++|..++.. +..+...
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk------f~~n~~A 1080 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK------FDMNVSA 1080 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH------hcccHHH
Confidence 99886432111 1111111111111 11122222222222 1222222
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~ 463 (820)
.+.|++ .-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|...|.-+++.+.+.|.
T Consensus 1081 ~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1081 IQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCc
Confidence 222222 22344444444444433 356999999999999999999887554 255678899999999999
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
+++-..++..+.+..-+|. +-+.||-+|++.+++.+-++.+. .+|..-......-|...|.++.|.-+|..
T Consensus 1149 ~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 9999999888888766654 44678889999999888776652 44555555566666677777777666543
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 003439 544 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 623 (820)
Q Consensus 544 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 623 (820)
...|..|...+.+.|.+..|...-+... +..+|.-+-.++...+.+.-|. +..+.+--...-..-|
T Consensus 1220 -----vSN~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1220 -----VSNFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEEL 1285 (1666)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHH
Confidence 2346667777777777777766443221 3345555545544443333221 1111111122234457
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
+.-|...|-+++-+.+++..+.++--+.+.+.-|+-+|++-
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 77778888888888888888888877777777777777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-06 Score=83.22 Aligned_cols=405 Identities=11% Similarity=0.044 Sum_probs=246.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHH-HHHHHHHHhCC-ChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 003439 278 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSW-NSIIAAYEQSN-DPITAHGFFTTMQQAGIQPDLLTLVSLTSIV 355 (820)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~-~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 355 (820)
+...-.-.+..|-..++-+.|.....+.+..-...- |.|+.-+.+.| +-.++.--+++...+-+ .-...|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp-----~aL~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP-----MALQVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc-----hHHHHHHHH
Confidence 555666788889999999999999988877533333 44444333333 22233323333322210 000111111
Q ss_pred HhcCcchhhhhHHH-HHHHhCCcCcchhHHhHHHHHHHhc--CCHHHHHHHHhcCC-----CCCchHHHHHHHHHHHcCC
Q 003439 356 AQLNDCRNSRSVHG-FIMRRGWFMEDVIIGNAVVDMYAKL--GIINSACAVFEGLP-----VKDVISWNTLITGYAQNGL 427 (820)
Q Consensus 356 ~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~ 427 (820)
.+.+ -.+.++-. .+.+.. .++.......-+.+|+.+ ++-..|...|-... ..|+.....+...+...|+
T Consensus 171 l~l~--v~g~e~~S~~m~~~~-~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 171 LELG--VNGNEINSLVMHAAT-VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHh--hcchhhhhhhhhhee-cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 1111 00000000 111111 222222223334444443 33334433332222 3367778888889999999
Q ss_pred hHHHHHHHHhhhhcCCCCCCcccHhhHHH-HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 428 ASEAIEVFQMMEECNEINPNQGTYVSILP-AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 428 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
.++|+..|++.+. +.|+..+-.-+-. .+...|+.+....+..++....- .+...|-.-....-..++++.|+.+-
T Consensus 248 n~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 248 YFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred chHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999998866 6666544222111 23566777777777666644321 11111111222334456788888888
Q ss_pred hhCCCCCccccchH---HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 507 YQVPRSSSVPWNAI---ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 507 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
++..+.|...-.++ ...+.+.|++++|.-.|+..+. +.| +...|..|+..|...|.+.+|.-.-+...+. +.
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hh
Confidence 87775554443333 3567788999999999998888 566 5579999999999999999988776655532 22
Q ss_pred CChhHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 583 PHLKHYGCMV-DLFGR-AGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 583 p~~~~~~~li-~~~~~-~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.+..+.+-+. +.+.- .---++|.+++++. .++|+-. ..+.+...|...|..+.++.++++.+...| |...++.|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHH
Confidence 3333333331 22221 22346788888876 6788754 777888889999999999999999999988 677889999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 003439 659 NIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 725 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 725 (820)
+++.....+.+|...|..+... .|+.+...+-+..+.++|+
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHhccC
Confidence 9999999999999999887654 4555666666666666665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-06 Score=87.40 Aligned_cols=365 Identities=13% Similarity=0.141 Sum_probs=201.7
Q ss_pred HHHHHccCChHHHHHHhcccCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcch
Q 003439 86 VNFYANLGDLSFSRHTFDHISY--R-NVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDG 162 (820)
Q Consensus 86 l~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 162 (820)
++.+.+.|++++|.+.-+++.. | |...+..-+-++.+.+++++|+.+.+. ..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~-------------------- 75 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK---NGAL-------------------- 75 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchh--------------------
Confidence 5667788899998888777643 3 455667777888999999999865554 1000
Q ss_pred HHHHHHHHHhCCCCcHHHHHH--HHHHhh--cCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 003439 163 KKIHCSVLKLGFEWDVFVAAS--LLHMYC--RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLE 238 (820)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 238 (820)
.+++. +=.+|| +.+..++|...++....-|..+-..=...+-+.|++++|+.+|+.+.++
T Consensus 76 ----------------~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 76 ----------------LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred ----------------hhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 11111 234455 6789999999998655555445555667788999999999999999776
Q ss_pred CCCC-ChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCc--cH-HHHHHHHHHHHccCCHHHHHHHHhcc--------C
Q 003439 239 GVSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEF--NL-FVSNNLINMYAKFGMMRHALRVFDQM--------M 306 (820)
Q Consensus 239 g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~-~~~~~li~~y~~~g~~~~A~~~f~~m--------~ 306 (820)
+..- |...-..++.+-+.. +. ..+......| +- ..|| ....+...|++.+|+++++.. .
T Consensus 140 ~~dd~d~~~r~nl~a~~a~l-------~~-~~~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 140 NSDDQDEERRANLLAVAAAL-------QV-QLLQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred CCchHHHHHHHHHHHHHHhh-------hH-HHHHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 5431 111222222211110 00 0111122222 11 2233 344567789999999998776 2
Q ss_pred CCCc-----hH-----HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHH---HHHHHhcCcchhh--hhHH---
Q 003439 307 ERDV-----VS-----WNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSL---TSIVAQLNDCRNS--RSVH--- 368 (820)
Q Consensus 307 ~~d~-----~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l---l~a~~~~~~~~~a--~~i~--- 368 (820)
+.|. .. ---|.-.+-..|+-++|..++....+.. .+|....... |.+...-.++-.+ ...+
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 2111 11 1224455667899999999999988764 3444322222 2222222222221 0011
Q ss_pred ---------HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCC-chHHHHHHHHHH--HcCChHHHHHHHH
Q 003439 369 ---------GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKD-VISWNTLITGYA--QNGLASEAIEVFQ 436 (820)
Q Consensus 369 ---------~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~ 436 (820)
..+... -......-+.++.+|. +..+.++++-..++... ...+.+++.... +...+.+|.+++.
T Consensus 290 ~~~l~~~~l~~Ls~~--qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKK--QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 011000 0111222245555554 44566666666666443 333444443322 2234666777776
Q ss_pred hhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 437 MMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHA--------RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 437 ~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
..-+ -.|+. ......+......|+++.|.+++. .+.+.+..| .+..+++.+|.+.++-+.|..++
T Consensus 366 ~~~~---~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl 440 (652)
T KOG2376|consen 366 QFAD---GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVL 440 (652)
T ss_pred HHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHH
Confidence 6654 33433 233344455667788888888877 444444443 44566777777777777777666
Q ss_pred hh
Q 003439 507 YQ 508 (820)
Q Consensus 507 ~~ 508 (820)
.+
T Consensus 441 ~~ 442 (652)
T KOG2376|consen 441 DS 442 (652)
T ss_pred HH
Confidence 43
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-07 Score=96.40 Aligned_cols=227 Identities=9% Similarity=-0.028 Sum_probs=147.2
Q ss_pred CChHHHHHHHHhhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003439 426 GLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAM 503 (820)
Q Consensus 426 g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 503 (820)
+..+.++.-+.++.......|+. ..|......+...|+.+.|...+..+++... .+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455666665555422233322 2344444556667777777777777766542 35678888888899999999999
Q ss_pred HHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC
Q 003439 504 SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFG 580 (820)
Q Consensus 504 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g 580 (820)
..|++.. +.+...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|.+.|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9888775 33456688888888899999999999999988 567654322223334556789999999976553 3
Q ss_pred CCCChhHHHHHHHHHHHcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-c
Q 003439 581 IKPHLKHYGCMVDLFGRAGHL--GMAHNFIQNM-P----VRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-V 651 (820)
Q Consensus 581 ~~p~~~~~~~li~~~~~~g~~--~eA~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~ 651 (820)
..|+... ..++..+ .|++ +++.+.+.+. . ..| ...+|..+...+.+.|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3444322 2333333 4444 3333333321 1 112 23489999999999999999999999999999744 4
Q ss_pred chHHhHHHH
Q 003439 652 GYYVLMSNI 660 (820)
Q Consensus 652 ~~~~~l~~~ 660 (820)
.+-..++.+
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.3e-07 Score=97.78 Aligned_cols=95 Identities=15% Similarity=0.248 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhh----C-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEF----G-IKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD 616 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----g-~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~ 616 (820)
++..|...|.+.|++++|.++|+++.... | ..+. ...++.|...|.+.++.++|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 78888888888888888888888876542 1 1222 356777888888888888888888765 34466
Q ss_pred HH-HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 617 AS-IWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 617 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
.. +|..|...|...|+++.|+++.+.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 54 999999999999999999999988764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-05 Score=87.91 Aligned_cols=444 Identities=12% Similarity=0.068 Sum_probs=239.3
Q ss_pred HhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-HH
Q 003439 171 KLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP-IT 246 (820)
Q Consensus 171 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 246 (820)
...+..|..+|-.|.-+..++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.++++-....-.|+. ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344678999999999999999999999999998653 34557999999999999999999999876544333443 34
Q ss_pred HHhHHHhhh-cCCChHHHHHHHHHHHHhC--C--CccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHH
Q 003439 247 VASILPVCA-RSDNILSGLLIHLYIVKHG--L--EFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYE 321 (820)
Q Consensus 247 ~~~ll~a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~ 321 (820)
+-..-+.|. +.+..++|..+-..++... . ......+-.+.-+|...-. ...++. -
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~s------e 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKS------E 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChH------H
Confidence 444445554 4567777777766666521 1 1112222223223322100 000000 0
Q ss_pred hCCChhhHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHH
Q 003439 322 QSNDPITAHGFFTTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 400 (820)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A 400 (820)
+.....++++.+++..+.+ -.|+..-|.++ -++..++++.|.+...+..+.+ -..+...+--|.-.+.-.+++.+|
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHH
Confidence 0001223444444443322 22222222222 2233445555555555555543 344455555555555555555555
Q ss_pred HHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHH-
Q 003439 401 CAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIK- 476 (820)
Q Consensus 401 ~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~- 476 (820)
+.+.+...+. |-+.-..-|..-..-++.++|+.....+...-. +...+ ...++-....+....+.-
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we---~~~~~-------q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWE---AEYGV-------QQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH---hhhhH-------hhhhhhhhhhhhhcccccC
Confidence 5554432211 111001111111224555555555555433000 00000 000000000000000000
Q ss_pred -hCCCCchhHHHHHHHHHHh---cCCHHHHHHHHhhCCCCCc------cccchHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003439 477 -NCLCFDVFVATCLVDMYGK---CGRIDDAMSLFYQVPRSSS------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVR 546 (820)
Q Consensus 477 -~g~~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 546 (820)
......+.++..+...... .-..+.....+...+.++. ..|......+...++.++|..-+.+... +.
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~ 680 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--ID 680 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cc
Confidence 0001111222222221111 1111111111111112221 1266667778888888888877777766 45
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCCC-HHHH
Q 003439 547 PD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHN--FIQNM-PVRPD-ASIW 620 (820)
Q Consensus 547 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~--~~~~m-~~~p~-~~~~ 620 (820)
|- ...|......+...|.+++|.+.|.... -+.|+ +....++..+|.+.|+..-|.. ++..+ .+.|+ ...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 53 3456666667788899999999987765 56775 5677888999999997666666 77776 56664 5699
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
-.|.....+.|+.+.|-+.|+-++++++.+|.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999987764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-05 Score=74.50 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=133.8
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCC-------hHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ-------GDKALN 535 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 535 (820)
.-+.|.+++--+.+. .|.. --.|+--|.+.+++++|..+.+++.+..+.-|-.-...++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345666665544442 2222 22355568899999999999988875444333322233444443 344555
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC--
Q 003439 536 FFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-- 612 (820)
Q Consensus 536 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-- 612 (820)
.|+-.-+.+..-|.+ --.++.+++.-..++++.+-++.++.. |=..-|...+ .+..+++..|.+.+|+++|-...
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 555444455444443 334455566666788999999988874 3333444444 47889999999999999998773
Q ss_pred CCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHhccCCC-CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 613 VRPDASIWGALLGAC-RIHGNMELGAVASDRLFEVDSE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 613 ~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.-.|..+|.+++.-| .+++..+.|..++-+.- .|. .......+++.+.+++.+=-|.+.|+.+...
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 114677888777665 56678888877654321 122 2334456789999999999999999887654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-05 Score=86.00 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=146.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 494 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 494 (820)
.-+...|-..|++++|+++.++..+ ..|+.+ .|..-...+-+.|++.+|.+..+.+.+... .|..+-+-.+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 3445567778888888888888777 556543 455556667888888888888888877653 36677777788888
Q ss_pred hcCCHHHHHHHHhhCCCCCccc----------c--chHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh-----------
Q 003439 495 KCGRIDDAMSLFYQVPRSSSVP----------W--NAIISCHGIHGQGDKALNFFRQMLDE--GVRPDH----------- 549 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~----------~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~----------- 549 (820)
++|++++|.+++....+.+..+ | .....+|.+.|++..|++-|....+. .+.-|.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999888887666433 3 23456788889998888877766542 122222
Q ss_pred --hHHHHHHHHHHhcC-------CHHHHHHHHHHhHHhhCCCCCh-----------hHHHHHHHHH---HHcCCHHHHHH
Q 003439 550 --ITFVSLLTACSHSG-------LVSEGQRYFHMMQEEFGIKPHL-----------KHYGCMVDLF---GRAGHLGMAHN 606 (820)
Q Consensus 550 --~t~~~ll~a~~~~g-------~~~~a~~~~~~m~~~~g~~p~~-----------~~~~~li~~~---~~~g~~~eA~~ 606 (820)
.+|..++.-.-+.. -...|.+++-.+.......... .--..+-.-- .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22333333221111 0123444443333221000000 0000000000 01111111111
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 607 FIQ-----------NM----P--VRPDASIWGALLGACRIH-GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 607 ~~~-----------~m----~--~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
.-. +. + ..||+. ..-+... .=+++|.+.++-+.+..|++..+|.+--.+|.+.|++-
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 110 00 1 112221 1112222 34688999999999999999999999999999999998
Q ss_pred hHHHHHH
Q 003439 669 GVDEVRS 675 (820)
Q Consensus 669 ~A~~~~~ 675 (820)
-|.+...
T Consensus 509 LaLqaL~ 515 (517)
T PF12569_consen 509 LALQALK 515 (517)
T ss_pred HHHHHHH
Confidence 7776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-05 Score=83.83 Aligned_cols=216 Identities=13% Similarity=0.120 Sum_probs=117.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHH
Q 003439 256 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGF 332 (820)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~ 332 (820)
..+++..+....+.+++ +.+.-..+....--.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34555566666666655 2222222332222334566888888888776655 4567899988888888999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcC---CC
Q 003439 333 FTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGL---PV 409 (820)
Q Consensus 333 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~ 409 (820)
|+..... .||.. .++.-|.-.-++.|+++......... ..
T Consensus 98 y~nAl~~--~~dN~-----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 98 YRNALKI--EKDNL-----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHhc--CCCcH-----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 9988764 34332 22222222222222222222221111 12
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH------HHhhccCChhHHHHHHHHHHHhCCCCch
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL------PAYSHVGALRQGIKIHARVIKNCLCFDV 483 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll------~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 483 (820)
.....|..+..++.-.|++..|..++++..+...-.|+...|.-.. ......|.++.|.+.+..-... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 2345677777777777777777777777666222234544443222 1234455555555554433221 11122
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP 510 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~ 510 (820)
..-..-.+.+.+.+++++|..++..+.
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 223344556677777777777777666
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.1e-06 Score=90.29 Aligned_cols=280 Identities=13% Similarity=0.148 Sum_probs=177.5
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCH
Q 003439 318 AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 397 (820)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~ 397 (820)
..+...|++++|++.+.+-... .+| ...+.......|.+.|+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~D-----------------------------------k~~~~E~rA~ll~kLg~~ 54 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILD-----------------------------------KLAVLEKRAELLLKLGRK 54 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCC-----------------------------------HHHHHHHHHHHHHHcCCH
Confidence 4456778888888888764332 223 333444555566666666
Q ss_pred HHHHHHHhcCCCCC--ch-HHHHHHHHHHHc-----CChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC-hhHHH
Q 003439 398 NSACAVFEGLPVKD--VI-SWNTLITGYAQN-----GLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA-LRQGI 468 (820)
Q Consensus 398 ~~A~~~f~~~~~~~--~~-~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~ 468 (820)
++|..++..+..+| -. -|..+..+.... ...+...++|+++.. .-|.......+.-.+..... -..+.
T Consensus 55 ~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 55 EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHH
Confidence 66666666655332 22 233333333211 245667778887765 33544444333222222122 23445
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------------------CCCcccc--chHHHHHHhcC
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP------------------RSSSVPW--NAIISCHGIHG 528 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------------------~~~~~~~--~~li~~~~~~g 528 (820)
.+....++.|++ .+++.|-..|....+.+-..+++.... .|....| .-+...|...|
T Consensus 132 ~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 132 EYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 566667777764 356667777776555555555554432 1112224 44567788999
Q ss_pred ChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHN 606 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~ 606 (820)
++++|+++.++.++ ..|..+ .|..-...+-+.|++++|.+..+... .+.+ |...-+--+..+.|+|++++|.+
T Consensus 209 ~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 209 DYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred CHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999 578754 77788889999999999999998876 3444 55666667788899999999999
Q ss_pred HHHhCCC---CC--C----HHHHH--HHHHHHHhcCChhHHHHHHHHHhc
Q 003439 607 FIQNMPV---RP--D----ASIWG--ALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 607 ~~~~m~~---~p--~----~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
++..... .| | ...|- -...+|.+.|++..|.+.|..+.+
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9877631 22 1 12442 345678899999999998887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00033 Score=85.90 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------CC----ccccchHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hhH
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVPR-------SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEG--VRPD--HIT 551 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t 551 (820)
..+...+...|++++|...+++... .+ ...+..+...+...|++++|...+++..... ..|. ..+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444455555666666555544320 00 0112233344555577777777766655421 1121 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY-----GCMVDLFGRAGHLGMAHNFIQNMPVR--PDA----SIW 620 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~m~~~--p~~----~~~ 620 (820)
+..+.......|+.++|.+.+........-......+ ......+...|+.++|.+.+...... ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4444556667788888877777664321111110111 11123445577888888887665211 111 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCC------CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDS------ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+..++...|+.++|...++++++... .....+..++.+|...|+.++|...+.++.+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555667777888888888887766421 12235567778888888888888888877764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-07 Score=89.28 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=172.2
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHh-hHHHHhhc
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLP--VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV-SILPAYSH 460 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~-~ll~a~~~ 460 (820)
-+.+...|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..+++.|+.+|.+-.+ ..|..+||. .+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHHHHHH
Confidence 3667788999999999999888654 34677888888999999999999999988776 678777774 45667788
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.++.+.+.++++.+.+.. ..++....++...|.-.++.|-|...+.++.+ .+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 889999999999988864 34566666777778888999999999988774 44455888888888999999999999
Q ss_pred HHHHHcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 538 RQMLDEGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 538 ~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
++.+..--.|+.. .|..|.......|++.-|.+.|+.... .-..+.+.++.|.-+-.|.|++++|..+++..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9988865566653 566677777778888888888876653 22234566777777777778888888777766
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.9e-05 Score=81.98 Aligned_cols=259 Identities=14% Similarity=0.180 Sum_probs=161.7
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCchH--HHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHH
Q 003439 390 MYAKLGIINSACAVFEGLPVKDVIS--WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 467 (820)
Q Consensus 390 ~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a 467 (820)
+-.....+.+|..+++.+..+++.+ |..+..-|+..|+++.|.++|.+.-. +.-.|..|.+.|.++.|
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHH
Confidence 3344556666666666665554432 45555666666777777666654322 33455666677777666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 468 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 468 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
.++-.+. .|.+..+..|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..++.+++..+- .|
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~ 878 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HG 878 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Ch
Confidence 6554332 23344555565656666778888888888877777664 467788888888888776653 44
Q ss_pred Ch--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---C-CHHHHH
Q 003439 548 DH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR---P-DASIWG 621 (820)
Q Consensus 548 ~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~---p-~~~~~~ 621 (820)
+. .|-..+..-+...|++..|.+.|-+.. -|.+-+++|-..+.+++|..+-+.-+-. . -...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 43 466667777888888888888765443 3556677888888888888877654211 1 122343
Q ss_pred HHH------HHHHhcCChhHHHHHH------HHHhc-----cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 622 ALL------GACRIHGNMELGAVAS------DRLFE-----VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 622 ~ll------~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
--+ ..+.+||-++.|+... +-+++ ..-.-++.++.++..+...|++++|.+.+-+..+.
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 222 2345666666665532 22222 22334667778888889999999998877766654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-07 Score=94.92 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=150.9
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.|++.+|.-.|+..++... -+...|--|...-+..++=..|+..+.+.. +.|....-+|...|...|.-.+|++.+
T Consensus 298 nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444444444444331 234445445555555555555555555544 334444555666777777777777777
Q ss_pred HHHHHcCCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 538 RQMLDEGVR--------PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 538 ~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
+.-+....+ ++..+-.. ..+.+........++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 776553210 01000000 12223334556667777777776777888999999999999999999999999
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 610 NM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 610 ~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+ ..+|+ ..+||-|...++...+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-.+...
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 87 67775 5599999999999999999999999999999999999999999999999999999988777654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00021 Score=76.91 Aligned_cols=409 Identities=14% Similarity=0.129 Sum_probs=244.3
Q ss_pred hhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHH
Q 003439 188 YCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGL 264 (820)
Q Consensus 188 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 264 (820)
+...|+.++|......-.. ++.++|..+--.+-...++++|+..|+.....+ ||
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~d--------------------- 107 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KD--------------------- 107 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CC---------------------
Confidence 3445788888777665543 456789888877878888999999998877643 22
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcC-
Q 003439 265 LIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG- 340 (820)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 340 (820)
|...+.-|.-.-++.|+++.....-....+ .....|..++.++.-.|+...|..++++..+..
T Consensus 108 -------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 108 -------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred -------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222333332223333444333333332222 345678888888888899999999888887654
Q ss_pred CCCCcchHHHHHHH------HHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC--Cc
Q 003439 341 IQPDLLTLVSLTSI------VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK--DV 412 (820)
Q Consensus 341 ~~pd~~t~~~ll~a------~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~ 412 (820)
-.|+...|.....- ....|.++.+.+......+. +.......-.-.+.+.+.+++++|..++..+..+ |.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 35666666544332 33455556555554443222 2333344455677889999999999999988754 44
Q ss_pred hHHHH-HHHHHHHcCChHHHH-HHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 413 ISWNT-LITGYAQNGLASEAI-EVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 413 ~~~~~-li~~~~~~g~~~~A~-~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
+.|.. +..++.+--+.-+++ .+|....+ ..|-... -..=++......-.+....++....+.|+++ ++..+
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~---~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSE---KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 44444 344443344444555 66666544 2221111 1111122222233344455566667777654 34444
Q ss_pred HHHHHhcCCHHH----HHHHHhhCC--------------CCCccccch--HHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003439 490 VDMYGKCGRIDD----AMSLFYQVP--------------RSSSVPWNA--IISCHGIHGQGDKALNFFRQMLDEGVRPDH 549 (820)
Q Consensus 490 i~~y~~~g~~~~----A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 549 (820)
...|-.-...+- +..+...+. +|....|.. ++..|-..|+++.|..+.+..++ -.|..
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchH
Confidence 444432221111 112222221 222233554 66778889999999999999988 46776
Q ss_pred h-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C--------HHH
Q 003439 550 I-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-D--------ASI 619 (820)
Q Consensus 550 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~--------~~~ 619 (820)
+ -|..=...+.+.|++++|..++++..+ --.||...-+--+.-..|+.+.++|.++.....-+- + .-.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcm 482 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCM 482 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhH
Confidence 5 565667889999999999999998773 224555544455667789999999999877663111 1 124
Q ss_pred HHHHH--HHHHhcCChhHHHHHHHHHh
Q 003439 620 WGALL--GACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 620 ~~~ll--~~~~~~g~~~~a~~~~~~~~ 644 (820)
|-.+- .+|.+.|++.+|.+-|..+.
T Consensus 483 Wf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 483 WFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 44433 35778888888877666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0007 Score=74.53 Aligned_cols=268 Identities=15% Similarity=0.160 Sum_probs=164.3
Q ss_pred CChhhhHHHHH--HHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHH
Q 003439 77 KTVFSSTKLVN--FYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLK 154 (820)
Q Consensus 77 ~~~~~~~~ll~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~ 154 (820)
-|..+-..+++ .|.--|+.+.|.+-...+. +...|..|.+.+++..+.+-|.-.+-. |...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGh-m~~a-------------- 786 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGH-MKNA-------------- 786 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhh-hhhh--------------
Confidence 35556666665 4777788888877666554 445699999999999988888766665 4211
Q ss_pred hhcCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 003439 155 ACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDE 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 234 (820)
.+.+...+..+.|-... ....-.-...|.+++|..++.+-.+ |..|=..|-..|++++|+++-+.
T Consensus 787 ------RgaRAlR~a~q~~~e~e----akvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 787 ------RGARALRRAQQNGEEDE----AKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred ------hhHHHHHHHHhCCcchh----hHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhh
Confidence 01122223333332111 1111122346888999999877553 44555677788999999988654
Q ss_pred HHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHH
Q 003439 235 MRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWN 314 (820)
Q Consensus 235 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~ 314 (820)
=-+.- =..||..-..-+...++.+.|.+.|+.. |. +--.+...|. .++..-+++.+.+.++.. |.
T Consensus 852 ~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~---~~-hafev~rmL~------e~p~~~e~Yv~~~~d~~L--~~ 916 (1416)
T KOG3617|consen 852 KDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKA---GV-HAFEVFRMLK------EYPKQIEQYVRRKRDESL--YS 916 (1416)
T ss_pred cccee---hhhhHHHHHHHHHhhccHHHHHHHHHhc---CC-hHHHHHHHHH------hChHHHHHHHHhccchHH--HH
Confidence 32221 1245655566666677888888877653 21 1111222111 223344445555554433 33
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhc
Q 003439 315 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKL 394 (820)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~ 394 (820)
-...-+-..|+.+.|+.+|...++ |-++++..+-.|+.++|-+|-.. ..|....-.|.++|-..
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYEND 980 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhh
Confidence 344445557888999988887754 45566666667888877776543 34666677788888888
Q ss_pred CCHHHHHHHHhcC
Q 003439 395 GIINSACAVFEGL 407 (820)
Q Consensus 395 g~~~~A~~~f~~~ 407 (820)
|++.+|...|.+.
T Consensus 981 g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888888654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.1e-08 Score=63.50 Aligned_cols=34 Identities=38% Similarity=0.590 Sum_probs=29.4
Q ss_pred hCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC
Q 003439 172 LGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 205 (820)
Q Consensus 172 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 205 (820)
.|+.||.++||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888999999999999999999999998885
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=88.72 Aligned_cols=148 Identities=12% Similarity=0.046 Sum_probs=93.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHHHcCC
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKH---YGCMVDLFGRAGH 600 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---~~~li~~~~~~g~ 600 (820)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.+..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchh
Confidence 33445555555555421 233444455666666777777777776665 33444321 1222333322346
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCc-chHHHHHHHH
Q 003439 601 LGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW-EGVDEVRSLA 677 (820)
Q Consensus 601 ~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m 677 (820)
+.+|.-+|+++ ...+++.+.+.+..++...|++++|+..++++++.+|+++.+...++-+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77888888877 33467778888888888899999999999999999998888888888888888888 4566777776
Q ss_pred HhC
Q 003439 678 RDR 680 (820)
Q Consensus 678 ~~~ 680 (820)
+..
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0001 Score=72.96 Aligned_cols=308 Identities=16% Similarity=0.175 Sum_probs=156.5
Q ss_pred HHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHH---HHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 003439 283 NNLINMYAKFGMMRHALRVFDQMMERDVVSWNSII---AAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLN 359 (820)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~ 359 (820)
--|-..+...|++.+|+.-|....+-|+..|.++- ..|...|+...|+.=+.+..+ ++||...-
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~A----------- 108 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAA----------- 108 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHH-----------
Confidence 33455566678888888888888887777777654 467777777777777776655 34542211
Q ss_pred cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhh
Q 003439 360 DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME 439 (820)
Q Consensus 360 ~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 439 (820)
-+++ ...+.|.|.++.|..-|+.+...+.. -+....++.+.-..++-..
T Consensus 109 -----------RiQR-------------g~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~------ 157 (504)
T KOG0624|consen 109 -----------RIQR-------------GVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV------ 157 (504)
T ss_pred -----------HHHh-------------chhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH------
Confidence 0111 12345667777777666665433211 0001111111111111111
Q ss_pred hcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCccc
Q 003439 440 ECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV---PRSSSVP 516 (820)
Q Consensus 440 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~ 516 (820)
....+..+...|+...+......+++.. +.|...+..-..+|...|++..|+.-+... ...+...
T Consensus 158 -----------l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~ 225 (504)
T KOG0624|consen 158 -----------LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG 225 (504)
T ss_pred -----------HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence 1122223344555555555555555532 235555666666677777777666544433 2444444
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HH---HH---------HHHHHhcCCHHHHHHHHHHhHHhhCCCC
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT-FV---SL---------LTACSHSGLVSEGQRYFHMMQEEFGIKP 583 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~m~~~~g~~p 583 (820)
.--+-..+.+.|+.+.++...++.++ +.||.-. |. .| +......+.|.++.+..+...+ ..|
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep 300 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEP 300 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCC
Confidence 55555666677777777777777777 5677642 11 11 0011223444444444444332 122
Q ss_pred Ch-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 584 HL-----KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 584 ~~-----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
.. ..+..+-..|...|++.+|++.-.+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|+|.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 21 12222333444555555555554443 34444 33544445555555555566666666655555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-05 Score=83.69 Aligned_cols=294 Identities=12% Similarity=-0.025 Sum_probs=171.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchH---HHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhH
Q 003439 382 IIGNAVVDMYAKLGIINSACAVFEGLP---VKDVIS---WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSI 454 (820)
Q Consensus 382 ~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~l 454 (820)
..+..+...|...|+.+.+.+.+.... ..+... .......+...|++++|.+.+++..+ ..|+.. .+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~- 82 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD---DYPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHH-
Confidence 344445555555566666544444322 112111 22223445677889999999888876 345443 2221
Q ss_pred HHHhh----ccCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHh
Q 003439 455 LPAYS----HVGALRQGIKIHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGI 526 (820)
Q Consensus 455 l~a~~----~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 526 (820)
...+. ..+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++.. +.+...+..+...|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 11222 23444444444433 1112232 3344456677888999999999998776 4445567778888899
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-H--HHHHHHHHcCC
Q 003439 527 HGQGDKALNFFRQMLDEGV-RPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY-G--CMVDLFGRAGH 600 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-~--~li~~~~~~g~ 600 (820)
.|++++|+..+++...... .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998887421 1222 235567778889999999999998875321111111111 1 22333344443
Q ss_pred HHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---------CCcchHHhHHHHhhhc
Q 003439 601 LGMAHNF---IQNM-PVRPD---ASIWGALLGACRIHGNMELGAVASDRLFEVDS---------ENVGYYVLMSNIYANV 664 (820)
Q Consensus 601 ~~eA~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~y~~~ 664 (820)
.+.+.+. .... +..|. .........++...|+.+.|...++.+....- .........+.++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3322222 1111 11011 12223456667788999999999887755221 1244556778889999
Q ss_pred CCcchHHHHHHHHHhCC
Q 003439 665 GKWEGVDEVRSLARDRG 681 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~~ 681 (820)
|++++|.+.+......+
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=81.76 Aligned_cols=214 Identities=12% Similarity=0.109 Sum_probs=139.1
Q ss_pred hHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---cc-------hHHH
Q 003439 453 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WN-------AIIS 522 (820)
Q Consensus 453 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~-------~li~ 522 (820)
.+.++..+..+++.+.+-+...+... .++.-++....+|...|...+....-+...+.+... |+ .+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34455555666667777666666654 455555666667777776666655554433222211 22 2333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHL 601 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~ 601 (820)
+|.+.++++.|+..|++.+..-..||..+ +....+++....+... -+.|... -.-.=..-+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 55566777778877777666544443321 2222333333333222 2333321 111125567788999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 602 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+|...+.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.+++..+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887 4445 5668888888899999999999999999999999999999989999999999999999988776
Q ss_pred C
Q 003439 680 R 680 (820)
Q Consensus 680 ~ 680 (820)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 5
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00026 Score=79.70 Aligned_cols=491 Identities=12% Similarity=0.086 Sum_probs=264.6
Q ss_pred hHHHHHHHHHhCCCCc-HHHHHHHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003439 162 GKKIHCSVLKLGFEWD-VFVAASLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQSGNAVEALDILDEMRL 237 (820)
Q Consensus 162 ~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 237 (820)
+..++..+...-+.++ ...|..|-..|+...+...|.+.|+..-+ .|..+|-.....|++..++++|..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 4455555555555555 45788888889888888999999987653 4677899999999999999999998333222
Q ss_pred CC-CCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHH-
Q 003439 238 EG-VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNS- 315 (820)
Q Consensus 238 ~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~- 315 (820)
.. ...-..-|...--.+-..++...+..-++...+.. +-|...|..|..+|.++|++..|.++|.+...-++.+|-.
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 11 00111122223334456677777777777777654 4478889999999999999999999998776644433322
Q ss_pred --HHHHHHhCCChhhHHHHHHHHHHc------CCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH-------hCCcCcc
Q 003439 316 --IIAAYEQSNDPITAHGFFTTMQQA------GIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR-------RGWFMED 380 (820)
Q Consensus 316 --li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-------~g~~~~~ 380 (820)
....-+..|.+.+|++.+...... +..--..++..+...+...|-...+..+++..++ .. ...+
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~-~~~~ 712 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS-LQSD 712 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-hhhh
Confidence 223345678899999888776532 1111222333333333333333333333332222 11 1111
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch--HHHHHHHH-HHHcCCh---H---HHHHHHHhhhhcCCCCCCcccH
Q 003439 381 VIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI--SWNTLITG-YAQNGLA---S---EAIEVFQMMEECNEINPNQGTY 451 (820)
Q Consensus 381 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~~g~~pd~~t~ 451 (820)
...|-. ..+|..+|-... +|.+ .+..++.. +-..+.. + -+.+.+-.-.+ ...+..++
T Consensus 713 ~~~Wi~----------asdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~W 778 (1238)
T KOG1127|consen 713 RLQWIV----------ASDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPW 778 (1238)
T ss_pred HHHHHH----------HhHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchH
Confidence 111111 123444444443 3311 11111111 1111111 1 01111111111 12223343
Q ss_pred hhHHHHhhc----cCC----hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchH
Q 003439 452 VSILPAYSH----VGA----LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAI 520 (820)
Q Consensus 452 ~~ll~a~~~----~~~----~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 520 (820)
..+...+.+ .+. ...|...+...++.. ..+...+|+|.-. +..|++.-|..-|-+-. +....+|..+
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 333322221 111 123333333333321 1234455555443 55677777776665433 5566778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhH---HhhCCCCChhHHHHHHHHHH
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQ---EEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~g~~p~~~~~~~li~~~~ 596 (820)
...+.++.+++-|...|...+. +.| |...|....-.-...|+.-+...+|..-. ...|--|+..-+-|-...-.
T Consensus 857 gvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 8888888888888888888777 556 44566665555566777777777765411 11133344433444444444
Q ss_pred HcCCHHHHHHHHHhCC-----------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc---CC---CCcchHHhHH
Q 003439 597 RAGHLGMAHNFIQNMP-----------VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV---DS---ENVGYYVLMS 658 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m~-----------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p---~~~~~~~~l~ 658 (820)
..|+.++-..-.++++ -.|+ ...|...+......+.++.|...+.+++.+ .- .+...--..+
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 5566655554444431 2243 346666666666667777777777665441 11 1122233456
Q ss_pred HHhhhcCCcchHHH
Q 003439 659 NIYANVGKWEGVDE 672 (820)
Q Consensus 659 ~~y~~~g~~~~A~~ 672 (820)
.++...|.++.|..
T Consensus 1015 RL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKK 1028 (1238)
T ss_pred hhhhhhcchhhHhh
Confidence 66777777775544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-05 Score=73.84 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=144.3
Q ss_pred CCHHHHHHHHhcCC-CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHH
Q 003439 395 GIINSACAVFEGLP-VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHAR 473 (820)
Q Consensus 395 g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 473 (820)
+++..++.+.++.+ +.+..+.+.......+.|++++|++-|+...+..|..|- ..|+..+ +..+.++.+.|.+...+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 44444444444444 233333333333344555555555555555553444442 2333322 23344555555555555
Q ss_pred HHHhCCCCc---------------------hhHHHHHH-------HHHHhcCCHHHHHHHHhhCCC-----CCccccchH
Q 003439 474 VIKNCLCFD---------------------VFVATCLV-------DMYGKCGRIDDAMSLFYQVPR-----SSSVPWNAI 520 (820)
Q Consensus 474 ~~~~g~~~~---------------------~~~~~~li-------~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 520 (820)
+++.|++.. ..+-++++ ..+.+.|+.+.|.+.+-.|++ .|+++...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 555443211 11223333 345688999999999999994 466665544
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH-Hc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG-RA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~-~~ 598 (820)
.-. -..+++.+..+-++-+++ +.| ...||..++-.|++..-++-|-.++.+-....---.+...|+ |++++. -.
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~q 359 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQ 359 (459)
T ss_pred HHh-cccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCC
Confidence 322 234566666666666666 455 346999999999999999988887753211000001223333 233333 33
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChh----HHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHH
Q 003439 599 GHLGMAHNFIQNMPVRPDASIWGALLGA-CRIHGNME----LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 599 g~~~eA~~~~~~m~~~p~~~~~~~ll~~-~~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 673 (820)
-..++|.+-++.+...-.......-+.. -.++.+-+ .+++-+++.+++- ......-+++|.+..++..+.+.
T Consensus 360 T~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~ 436 (459)
T KOG4340|consen 360 TAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKI 436 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHH
Confidence 4566666555443100000000011111 11222222 2334444555432 22445678899999999999999
Q ss_pred HHHHHhC
Q 003439 674 RSLARDR 680 (820)
Q Consensus 674 ~~~m~~~ 680 (820)
|+.-.+.
T Consensus 437 Fr~Svef 443 (459)
T KOG4340|consen 437 FRKSVEF 443 (459)
T ss_pred HHHHHhh
Confidence 9877664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-05 Score=72.97 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 559 (820)
.++..+...|-+.|..+.|.+-|++.. +.+-...|....-+|..|++++|...|++....-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344455555555555555555555433 33344455555555666666666666666665322222 23566666666
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a 636 (820)
.+.|+.+.|.++|++..+ ..|+ ....-.|.....+.|++..|..+++.. ...++..+..-.|..-...||.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 666777777777766553 2332 345555666666777777777776655 2335555555555556667777777
Q ss_pred HHHHHHHhccCCCCcc
Q 003439 637 AVASDRLFEVDSENVG 652 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~ 652 (820)
-+.-.++...-|....
T Consensus 227 ~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 227 QRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhCCCcHH
Confidence 7666666666665443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0026 Score=78.12 Aligned_cols=193 Identities=14% Similarity=0.058 Sum_probs=95.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCC-------CC----chHHHHHHHHHHHcCChHHHHHHHHhhhhcC-CCCCC--ccc
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPV-------KD----VISWNTLITGYAQNGLASEAIEVFQMMEECN-EINPN--QGT 450 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-g~~pd--~~t 450 (820)
..+...+...|++++|...+++... ++ ...+..+...+...|++++|...+++..... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444555566666666665543221 01 1123333444555677777777766654310 01111 112
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCCCCc-hh-----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-c------c
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCLCFD-VF-----VATCLVDMYGKCGRIDDAMSLFYQVPRSSSV-P------W 517 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~-----~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~------~ 517 (820)
+..+.......|+.+.|.+.+..+....-... .. .....+..+...|+.+.|.+.+.....+... . +
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 22233345566777777666665543211000 00 0011123345567777777777665532211 1 2
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDE----GVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
..+..++...|++++|...+++.... |..++. .+...+..++...|+.++|.+.+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566677777777777766553 222222 2444455566667777777777666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00045 Score=77.81 Aligned_cols=275 Identities=11% Similarity=0.019 Sum_probs=166.5
Q ss_pred HHHHHHHhcC---CCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHH
Q 003439 398 NSACAVFEGL---PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHAR 473 (820)
Q Consensus 398 ~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~ 473 (820)
..|...+..- ...+...||.|.-. ...|.+.-|..-|-+-.. ..| ...+|..+--.|.+..+++.|.+.+..
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEEecccHHHhhHHHHh
Confidence 3455555543 24577888887655 555777777776665544 333 556777777778888899999999888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCccccchHHHHHHhcCChHHHHHHHHHHHH---
Q 003439 474 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD--- 542 (820)
Q Consensus 474 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--- 542 (820)
.....+ .+..-+-...-..-..|+.-++..+|..-. -++..-|-.-.....++|+.++-+...++.-.
T Consensus 876 ~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 876 VQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 776432 233333333333445677777887776421 22333355555556677777665554444322
Q ss_pred ------cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH----HHHHHHcCCHHHHHHHHHhCC
Q 003439 543 ------EGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM----VDLFGRAGHLGMAHNFIQNMP 612 (820)
Q Consensus 543 ------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l----i~~~~~~g~~~eA~~~~~~m~ 612 (820)
.|.+-+...|........+.+.++.|.+...+...-...+-+...|+.. ..++...|.++.|..-+...+
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 1233345688888888888888888888777654322234455555543 344555678887777666554
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH---hHHHHhhhcCCcchHHHHHHHHH
Q 003439 613 VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV---LMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 613 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
.+-|.-+-.+-+.. .-.|+++.+.+.|++++.+.-++...-+ .++......+.-+.|....-+..
T Consensus 1035 ~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1035 MEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 44444444333333 4567899999999999887654444223 34444556666677766544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.5e-06 Score=81.77 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=112.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---Cc---cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----H
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SS---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----T 551 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 551 (820)
....+-.+...|.+.|++++|...|+++... +. ..|..+..+|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445556666677777777777777766522 11 23556667777777777777777777763 44322 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003439 552 FVSLLTACSHS--------GLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 622 (820)
Q Consensus 552 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 622 (820)
+..+..++... |+.++|.+.++.+... .|+.. .+..+.. .+...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHH-----------HHHHHH
Confidence 44444445443 5667777777766643 33321 1111111 00011000 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888999999999999999987764 467889999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.8e-06 Score=83.83 Aligned_cols=225 Identities=11% Similarity=0.077 Sum_probs=142.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 003439 415 WNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLC-FDVFVATCLVDMY 493 (820)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y 493 (820)
..-+.++|.-.|+++.++ .++.. . -.|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~-~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKK-S-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-T-T-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHH---HHhcc-C-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 334556666677666543 33322 2 2455544444444443333333333333322222222 2333334444567
Q ss_pred HhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 003439 494 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQ 569 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 569 (820)
...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7889999999888765 4455556678889999999999999999987 44444 44445444432 34689999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh-hHHHHHHHHHhcc
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNM-ELGAVASDRLFEV 646 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 646 (820)
.+|+++.++ ..+++.+.+.+.-+....|++++|.+++++. ...|+ ..++-.++......|+. +.+.+...++...
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999998754 4577888999999999999999999999875 44454 44777777777788877 6788899999888
Q ss_pred CCCCc
Q 003439 647 DSENV 651 (820)
Q Consensus 647 ~p~~~ 651 (820)
.|+++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 89754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.004 Score=68.84 Aligned_cols=298 Identities=14% Similarity=0.119 Sum_probs=159.1
Q ss_pred CCChhhhHHHHHHHHccCChHHHHHHhcccCCC-Ccc-----------hHHHHHHHHHhCCCchHHHHHHHHHhhhCCCC
Q 003439 76 IKTVFSSTKLVNFYANLGDLSFSRHTFDHISYR-NVY-----------TWNSMISVYVRCGRLSEAVDCFYQFTLTSGLR 143 (820)
Q Consensus 76 ~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~-~~~-----------~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~ 143 (820)
..+-.+|..+.+|+.+..+++-|.-.+..|.+. .+. .=.....--..-|..++|+.+|++
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~-------- 825 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQ-------- 825 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHH--------
Confidence 356678999999999999998888877777531 100 000011111234555555555555
Q ss_pred CCccccHHHHHhhcCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCC-CcccHHHHHHHHHhC
Q 003439 144 PDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQS 222 (820)
Q Consensus 144 p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~ 222 (820)
-.+ |..|=..|-..|.+++|.++-+.-.+- =..||..-..-+-..
T Consensus 826 -------------------------ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 826 -------------------------CKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred -------------------------HHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222 223334566677888877775442211 112444444445556
Q ss_pred CChhHHHHHHHHHHHCC-------------------CCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHH
Q 003439 223 GNAVEALDILDEMRLEG-------------------VSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSN 283 (820)
Q Consensus 223 g~~~~A~~l~~~m~~~g-------------------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 283 (820)
++.+.|++.|++-.... -.-|...|.---.-.-..|+++.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 66777776665532110 011112222222222334555555555444322 33
Q ss_pred HHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchh
Q 003439 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRN 363 (820)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 363 (820)
+++...|-.|+.++|-++-++- .|..+...|...|-..|++.+|..+|.+.+ +|...|+.|-..+--+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence 4455555567777776665543 466677778888888999999999998864 45555555544332111
Q ss_pred hhhHHHHHHHhCCcCcch-----------hHHhHHHHHHHhcCCHHHHHHHHhcCC--------------CCCchHHHHH
Q 003439 364 SRSVHGFIMRRGWFMEDV-----------IIGNAVVDMYAKLGIINSACAVFEGLP--------------VKDVISWNTL 418 (820)
Q Consensus 364 a~~i~~~~~~~g~~~~~~-----------~~~~~li~~y~~~g~~~~A~~~f~~~~--------------~~~~~~~~~l 418 (820)
+.....-.| +.|. .-..--+..|-|.|.+.+|+++-=+-. ..|....+--
T Consensus 1012 ---L~nlal~s~--~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1012 ---LANLALMSG--GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred ---HHHHHhhcC--chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111111111 0110 111234567888888888876532221 1244444555
Q ss_pred HHHHHHcCChHHHHHHHHhhhh
Q 003439 419 ITGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~ 440 (820)
..-++.+.++++|..++-..++
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 5566777888888888766654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00016 Score=76.28 Aligned_cols=436 Identities=12% Similarity=0.022 Sum_probs=237.0
Q ss_pred HhhcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-HHHHhHHHhhhcCCChHH
Q 003439 187 MYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP-ITVASILPVCARSDNILS 262 (820)
Q Consensus 187 ~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 262 (820)
+....|+++.|...|-+.. .+|.+.|.-=..+|+..|++++|++=-.+-++ +.|+- --|+-.-.+....|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 4456799999999997754 46788888889999999999998876655544 45653 467777777888889999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHH-HHHHhccCCCCchHHHHHH-----HHHHhCCChhhHHHHHHHH
Q 003439 263 GLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHA-LRVFDQMMERDVVSWNSII-----AAYEQSNDPITAHGFFTTM 336 (820)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~m~~~d~~~~~~li-----~~~~~~g~~~~A~~~~~~m 336 (820)
|..-|..-++.. +.+...++.|.+++ ..+.+ .+.|. ++..|..+. ..+.....+..-++.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~- 157 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK- 157 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-
Confidence 998888877764 44677788888877 11111 11111 112222111 111111111111111110
Q ss_pred HHcCCCCCcc-h---HHHHHHHHHhcCcchhhhhHHHHHH--HhCCcCcchhHHhHHHHHHHhcCC-HHHHHHHHhcCCC
Q 003439 337 QQAGIQPDLL-T---LVSLTSIVAQLNDCRNSRSVHGFIM--RRGWFMEDVIIGNAVVDMYAKLGI-INSACAVFEGLPV 409 (820)
Q Consensus 337 ~~~g~~pd~~-t---~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~ 409 (820)
.|... . ...++.+.......+.....-.... ..+ ..|.. --.......++ .++.+...
T Consensus 158 -----~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~-~~p~~----~~~~~~~~~~d~~ee~~~k~----- 222 (539)
T KOG0548|consen 158 -----NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM-AEPCK----QEHNGFPIIEDNTEERRVKE----- 222 (539)
T ss_pred -----CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCC-CCccc----ccCCCCCccchhHHHHHHHH-----
Confidence 11000 0 0111111111110000000000000 000 00000 00000000000 00000000
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHh-hHHHHhhccCChhHHHHHHHHHHHhCCCCc------
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYV-SILPAYSHVGALRQGIKIHARVIKNCLCFD------ 482 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~------ 482 (820)
-..-...+..+.-+..+++.|++-+..... +. ...||. ..-.++...|........-...++.|...-
T Consensus 223 -~a~~ek~lgnaaykkk~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI 297 (539)
T KOG0548|consen 223 -KAHKEKELGNAAYKKKDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI 297 (539)
T ss_pred -hhhHHHHHHHHHHHhhhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH
Confidence 001123344455555666666666666555 33 333433 333345566655555554444444332210
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH 561 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~ 561 (820)
......+..+|.+.++.+.|...|.+...+-.. -....+....+++++......- +.|+.. -...=.+.+.+
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHh
Confidence 111222445778888999999998875421111 1122334455666666655555 456542 22223667888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 639 (820)
.|++..|...+.+++.. -+-|...|+.-.-+|.+.|.+.+|++--+.. ...|+.. .|.-=..++....+++.|.+.
T Consensus 371 ~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred ccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998854 2336678999999999999999998876655 4566544 555556666677799999999
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhc
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
|++.++++|++..+...+...+...
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999888877777766654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-07 Score=59.72 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=26.6
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHhccC
Q 003439 274 GLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM 306 (820)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (820)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-05 Score=92.71 Aligned_cols=198 Identities=13% Similarity=0.138 Sum_probs=165.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPR--------SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV 553 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 553 (820)
+...|-..|......++++.|++++++..+ .-...|.+++..-...|.-+...++|+++.+. .--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666777777888999999999988762 12345999998888889889999999999883 33345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh
Q 003439 554 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---ASIWGALLGACRI 629 (820)
Q Consensus 554 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~ 629 (820)
.|+..|.+.+..++|.++++.|.++++ .....|...++.+.+..+-+.|..+++++ ..-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999877 56678999999999999999999999876 33332 3355566666789
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 683 (820)
+||.++|+.+|+.++.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999988663
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.1e-06 Score=76.59 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 003439 535 NFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-P 612 (820)
Q Consensus 535 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 612 (820)
.+|++.++ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 45664 44566777888888888888888763 444 5677788888888888888888888877 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 613 VRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 613 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 55688888888888899999999999999999988888877766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-06 Score=76.09 Aligned_cols=98 Identities=11% Similarity=-0.061 Sum_probs=87.9
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 581 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 581 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4455 4556788899999999999999987 4555 5669999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 003439 659 NIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.++...|++++|...++...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=76.89 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hhHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC-RIHGN--MELG 636 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 636 (820)
.++.+++...++...+. -+.+...|..|...|...|++++|.+.+++. ...| +..+|..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555554432 2335566777777777777777777777766 4455 445777777653 56666 4888
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+++++++.+|+++.++..|+..+...|++++|...++++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00051 Score=74.07 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=169.3
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhh-HHHHhhccCChhHHHHHHHHHHHhCCCCchhHHH---
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS-ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVAT--- 487 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~--- 487 (820)
...|..+...+...|+.+++...+.+..+.....++...... ....+...|+++.+.++++.+.+... .+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 445666777777788888887777776551222222221211 12235678999999999999888643 2333433
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCccc---cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 003439 488 CLVDMYGKCGRIDDAMSLFYQVPRSSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSG 563 (820)
Q Consensus 488 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 563 (820)
.+.......|..+.+.+.++...+.+... +..+...+...|++++|.+.+++..+. .|+. ..+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 22222334566777777776543333322 334556788999999999999999994 5654 56778888999999
Q ss_pred CHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHhcCChh
Q 003439 564 LVSEGQRYFHMMQEEFGIKPHL--KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP--DASIW--G--ALLGACRIHGNME 634 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p--~~~~~--~--~ll~~~~~~g~~~ 634 (820)
++++|..+++.........|+. ..|..+...+...|++++|.+++++. ...| ..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999877532222332 34557888999999999999999986 2233 22211 1 3344445556555
Q ss_pred HHHHH---HHHHhccCCCCc--chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 635 LGAVA---SDRLFEVDSENV--GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~---~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.+. ........|... ..-...+.++...|++++|....+.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44444 222111112211 12235777888999999999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0081 Score=63.78 Aligned_cols=421 Identities=13% Similarity=0.156 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPV--R-DSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 251 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 251 (820)
+-|+..|+.||.-+... .++++++.++++.. | ....|..-|.+-....+++....+|.+....-.. ...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 56788999999977766 89999999999874 3 4567999999999999999999999988754333 33333333
Q ss_pred Hhhhc-CCChHH----HHHHHHHH-HHhCCCc-cHHHHHHHHHH---------HHccCCHHHHHHHHhccCCC-------
Q 003439 252 PVCAR-SDNILS----GLLIHLYI-VKHGLEF-NLFVSNNLINM---------YAKFGMMRHALRVFDQMMER------- 308 (820)
Q Consensus 252 ~a~~~-~~~~~~----a~~~~~~~-~~~g~~~-~~~~~~~li~~---------y~~~g~~~~A~~~f~~m~~~------- 308 (820)
.--.+ .++... -.+.|+.. .+.|+++ +...|+..+.. |....+++..+++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 32221 222222 22334443 3456554 33456666554 34445677788888887552
Q ss_pred ---CchHHHHHHHH-----HH--hCCChhhHHHHHHHHHH--cCCCCCcch---------------HHHHHHHHHhcCcc
Q 003439 309 ---DVVSWNSIIAA-----YE--QSNDPITAHGFFTTMQQ--AGIQPDLLT---------------LVSLTSIVAQLNDC 361 (820)
Q Consensus 309 ---d~~~~~~li~~-----~~--~~g~~~~A~~~~~~m~~--~g~~pd~~t---------------~~~ll~a~~~~~~~ 361 (820)
|-..|..=|.. +. +...+..|..+++++.. .|+.-+..+ |..+|.-= +.+.+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCc
Confidence 22222211111 11 22345667777777643 343332222 22222111 11111
Q ss_pred h--hhhh-------HHHHHHH-hCCcCcchhHHh-----HHHHHHHhcCCHH-------HHHHHHhcCCCC----CchHH
Q 003439 362 R--NSRS-------VHGFIMR-RGWFMEDVIIGN-----AVVDMYAKLGIIN-------SACAVFEGLPVK----DVISW 415 (820)
Q Consensus 362 ~--~a~~-------i~~~~~~-~g~~~~~~~~~~-----~li~~y~~~g~~~-------~A~~~f~~~~~~----~~~~~ 415 (820)
. .+.. +|++.+. .+ +.|++...- ..-+.+...|+.. ++..+++...+. +...|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~-~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLG-YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0000 1111111 11 222221111 1112233333332 233333322111 11111
Q ss_pred HHHHHHH---HHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC-chhHHHHHHH
Q 003439 416 NTLITGY---AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF-DVFVATCLVD 491 (820)
Q Consensus 416 ~~li~~~---~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~ 491 (820)
..+..-- .+....+.....+++......+.|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ ++.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 1111100 0001234444555555442334444 356666666667777777777777777766555 6777777777
Q ss_pred HHHhcCCHHHHHHHHhhCC--CCCccc-cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHH
Q 003439 492 MYGKCGRIDDAMSLFYQVP--RSSSVP-WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVS 566 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 566 (820)
-|+ .++.+-|.++|+.-. -.|... -+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|+..
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 665 356677777776433 122222 344455555666666677777777666555554 36666666666667766
Q ss_pred HHHHHHHHhHHhhC--CCCChhHHHHHHHHHHHcCCHH
Q 003439 567 EGQRYFHMMQEEFG--IKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 567 ~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~ 602 (820)
.+.++-+++...+. ..|...+-..+++.|+-.+...
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 66666666555443 3333334444555555544443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.4e-06 Score=73.15 Aligned_cols=118 Identities=8% Similarity=-0.017 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
.+..-.+...+...|++++|..+|+-. ...| +..-|..|...|...|++++|+..|.++..++|+++..+..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344556667788899999999999877 4556 45589999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 003439 663 NVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 725 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 725 (820)
..|+.++|.+-|+...... ..+|+..++..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887641 126777777777777666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-05 Score=84.91 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=136.1
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 456 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 456 (820)
++|-..+...+...+.++|....|..+|+++ ..|.-.|..|+..|+..+|..+..+-.+ -+||..-|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LG- 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLG- 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhh-
Confidence 4555666677788888888888888888874 4677778888888887777777666544 344544444444
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHH
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 536 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 536 (820)
|......-++.|.++++....+--..|+-+ ...+++++++.+.
T Consensus 465 ----------------------------------Dv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 465 ----------------------------------DVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred ----------------------------------hhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 433333334555555544332211111111 1235777777777
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 537 FRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 537 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
|+.-.+ +.|- ..||..+..+..+.++++.|.+.|.... .+.|+ .+.||.+-.+|.+.|+..+|...+++. +.
T Consensus 508 le~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 508 LERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 777666 4453 3477777777777788888888777665 34553 456677777777777777776666665 22
Q ss_pred C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 614 R-PDASIWGALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 614 ~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
+ -+-.+|...+-....-|+.+.|++++.+++.+.
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 2 223366666666666777777777777666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00028 Score=68.68 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=118.4
Q ss_pred hcCCHHHHHHHHhhCC-CCCccccchHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 495 KCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
..+++..+..+.++.+ +.+..+.+.......+.|++++|++-|+...+- |..| ...|+..+ +..+.|+++.|+++.
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHH
Confidence 3466666677777766 345555555555556777777777777777663 3333 33444333 334566777777777
Q ss_pred HHhHHhhCCCC-------------C--------hhHHHHHH-------HHHHHcCCHHHHHHHHHhCC----CCCCHHHH
Q 003439 573 HMMQEEFGIKP-------------H--------LKHYGCMV-------DLFGRAGHLGMAHNFIQNMP----VRPDASIW 620 (820)
Q Consensus 573 ~~m~~~~g~~p-------------~--------~~~~~~li-------~~~~~~g~~~eA~~~~~~m~----~~p~~~~~ 620 (820)
.++.++ |++. | .-+-+.++ ..+.+.|+.+.|.+.+..|| .+-|++|.
T Consensus 202 SEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 777654 4432 1 11223333 34568899999999999995 33577776
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
..+.- --..+++..+.+-++-+++++|--..++..+.-+|++..-++-|..+..+
T Consensus 281 HN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55432 23456777888888889999998888999999999999998888877643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00019 Score=74.63 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=115.1
Q ss_pred HHHhcC-CHHHHHHHHhhCC---CCCccccchHHHHHHhcCCh--HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003439 492 MYGKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG--DKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL 564 (820)
Q Consensus 492 ~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 564 (820)
++.+.| .+++++..++++. .++...|+-..-.+.+.|+. ++++.+++++++ ..| |..+|.....++.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhh
Confidence 334444 4566666666554 34444566554444455542 677888888887 456 45578888888888888
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----
Q 003439 565 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA---GHL----GMAHNFIQNM-PVRP-DASIWGALLGACRIHG---- 631 (820)
Q Consensus 565 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~----~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---- 631 (820)
++++++.++.+.+. . .-+...|+....++.+. |.. +++.++..++ ...| |...|+.+...+...+
T Consensus 158 ~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 158 WEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 99999988888754 2 22445666665555544 222 4566776444 5566 4569999999988743
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
+..+|...+.+++..+|+++.+...|+++|...
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 456799999999999999999999999999864
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00013 Score=70.51 Aligned_cols=153 Identities=8% Similarity=0.118 Sum_probs=117.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 568 (820)
+-+|.+.|+++......+.+..+. . .|...++.++++..+++.++. .| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888877655554332221 1 122367778888889888884 45 556888899999999999999
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003439 569 QRYFHMMQEEFGIKP-HLKHYGCMVDL-FGRAGH--LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDR 642 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p-~~~~~~~li~~-~~~~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 642 (820)
...|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998874 455 56778888886 467787 59999999987 5566 456888999999999999999999999
Q ss_pred HhccCCCCcchHH
Q 003439 643 LFEVDSENVGYYV 655 (820)
Q Consensus 643 ~~~~~p~~~~~~~ 655 (820)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999987765443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.9e-05 Score=75.45 Aligned_cols=179 Identities=13% Similarity=0.038 Sum_probs=124.4
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---Ccc---ccchH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLC-F-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSV---PWNAI 520 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~~l 520 (820)
..+......+...|+++.|...++.+.+.... | ....+..+...|.+.|++++|...|+++.+. +.. .|..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 45566677788999999999999999876432 1 1246677889999999999999999988632 222 24445
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 003439 521 ISCHGIH--------GQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM 591 (820)
Q Consensus 521 i~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 591 (820)
..++.+. |+.++|++.|+++... .|+.. ....+..... ... ... .....+
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~~~~~~ 172 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------GKELYV 172 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------HHHHHH
Confidence 5556544 7899999999999984 67653 2222211100 000 000 112356
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 592 VDLFGRAGHLGMAHNFIQNM----PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
.+.|.+.|++++|...+++. +..|. ...|..+..++...|+.++|...++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 67888999999999988876 22332 45888999999999999999998887766544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.3e-05 Score=86.15 Aligned_cols=139 Identities=9% Similarity=0.087 Sum_probs=109.5
Q ss_pred CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHH
Q 003439 512 SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYG 589 (820)
Q Consensus 512 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~ 589 (820)
.+...+-.|.....+.|..++|..+++...+ +.||.. ....+..++.+.+.+++|....++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3456677778888888999999999999988 688765 677788888999999999998888773 4554 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNMP-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.+..++...|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 78888889999999999998872 3444 568888888899999999999999999887654444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00062 Score=71.43 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=59.8
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|.+++|+..++.+... .+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...|-.+..++.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3445555555555554422 1223333444455555555555555555554 33444 335555555555555555555
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
..++....-+|+|+..|..|+..|...|+..+|...+.+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 555555555555555555555555555555554444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-05 Score=84.35 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=103.2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
++|--..-..+.+.+.++|-...|..+|+++. .|.-.|.+|...|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 44444555667777778888888888887643 466677778888877788777777766 36777777777777
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 636 (820)
.-...-+++|+++++....+ .-..+.....+.++++++.+.++.- .++|- ..+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 66666667777766544322 0001111112234444444444432 33332 22444444444444445555
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+.|...+.++|++...|..++-+|.+.|+..+|...++++.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 5555555555555555555555555555544444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00028 Score=82.11 Aligned_cols=230 Identities=11% Similarity=0.192 Sum_probs=161.3
Q ss_pred CCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC-cccc
Q 003439 445 NPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKN-CLCF---DVFVATCLVDMYGKCGRIDDAMSLFYQVPR-SS-SVPW 517 (820)
Q Consensus 445 ~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~ 517 (820)
.||+ ..|...+.-..+.++.+.|+++.+++++. +++- -.-+|.+++++-..-|.-+...++|++..+ .| ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 4543 44556666677778888888888777653 2221 134677777777777878888888888773 23 3448
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDL 594 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~ 594 (820)
..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+...-+.|..++.+..+. -|. .....-.+.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 88888999999999999999999886 4545568888888888888888888888887743 343 4445566777
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCcchHHhH-HHHhhhcCCcch
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVD--SENVGYYVLM-SNIYANVGKWEG 669 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l-~~~y~~~g~~~~ 669 (820)
-.+.|+-+.+..+|+.. .-.| ..-.|+.++..-.+||+.+.++.+|++++++. |.....+.-. ...-..-|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78899999999999876 2233 45589999999999999999999999998754 5444433322 222223355554
Q ss_pred HHHHHHHHH
Q 003439 670 VDEVRSLAR 678 (820)
Q Consensus 670 A~~~~~~m~ 678 (820)
+..+-.++.
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 544444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.9e-05 Score=78.87 Aligned_cols=211 Identities=13% Similarity=0.140 Sum_probs=143.2
Q ss_pred CcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHH
Q 003439 359 NDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVF 435 (820)
Q Consensus 359 ~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 435 (820)
|++..|.-.++..++.. |.+...|--|.......++-..|+..+.+.. ..|....-+|...|...|.-.+|+..|
T Consensus 299 G~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44444444444444443 5555666666666666666556655555443 345666677777888888888888888
Q ss_pred HhhhhcCCC-----CC---CcccHhhHHHHhhccCChhHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 436 QMMEECNEI-----NP---NQGTYVSILPAYSHVGALRQGIKIHARV-IKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 436 ~~m~~~~g~-----~p---d~~t~~~ll~a~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
+.-.. ... .+ +..+-.. ........+....++|-.+ ...+..+|+.+...|.-.|--.|+++.|...|
T Consensus 377 ~~Wi~-~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 377 DKWIR-NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHH-hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 87754 110 00 1100000 1122222334444554444 45565678888999999999999999999999
Q ss_pred hhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 507 YQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 507 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
+... +.|...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-...
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9776 55778899999999999999999999999999 799875 55567778999999999999886654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.4e-06 Score=55.27 Aligned_cols=35 Identities=34% Similarity=0.681 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 003439 210 GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDP 244 (820)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 244 (820)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=70.84 Aligned_cols=134 Identities=14% Similarity=0.088 Sum_probs=102.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003439 545 VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGA 622 (820)
Q Consensus 545 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ 622 (820)
..|+......+-.++...|+-++...+...... .-..+......++....+.|++.+|...+++. .-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443335566677777877777777665442 22334455566888888889999999888887 34456778988
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..+|-+.|+.++|...|.+++++.|+++.....|+-.|.-.|++++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8888999999999999999999999988888888888888899999998888777654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00042 Score=72.63 Aligned_cols=140 Identities=17% Similarity=0.151 Sum_probs=113.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGR 597 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~ 597 (820)
....+...|++++|+..++.++. -.||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHh
Confidence 33445577999999999999988 47877666554 557899999999999999988 45676 4566678899999
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 598 AGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 598 ~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
.|+..+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|+-.|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHH
Confidence 99999999999887 33446789999999999999987777654 446888999999999999
Q ss_pred HHHhCC
Q 003439 676 LARDRG 681 (820)
Q Consensus 676 ~m~~~~ 681 (820)
...++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 888763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.2e-05 Score=67.47 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666677777777777777765 3334 455777777788888888888888888888888888888888888888
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.2e-06 Score=53.68 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCc
Q 003439 311 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDL 345 (820)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 345 (820)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00032 Score=67.70 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=65.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 566 (820)
-..|.-.|+-+.+..+..... ..|...-+..+....+.|++.+|+..|++.... -+||..+|+.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 333444444444444444322 222222333444445555555555555555442 1223345555555555555555
Q ss_pred HHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVR--PDASIWGALLGACRIHGNMELGAVASD 641 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~ 641 (820)
+|..-|.+..+ +.| ++..++.|.-.|.-.|+++.|..++...... .|..+-..|.-+....|++++|+.+..
T Consensus 152 ~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555544442 222 2233444444444445555555544444111 133344444444444455544444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00069 Score=70.52 Aligned_cols=186 Identities=10% Similarity=0.113 Sum_probs=134.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHG-QGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSG 563 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 563 (820)
+-..+.+.++.++|..+.+++. +.+...|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 3334455667778888877765 334455776666666667 679999999999984 5544 46665555556666
Q ss_pred C--HHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh--
Q 003439 564 L--VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH---GNM-- 633 (820)
Q Consensus 564 ~--~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~-- 633 (820)
. .+++..+++.+.+ +.| +...|+...-++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 121 ~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 5 3677888877774 344 5678888888899999999999999988 3334 566898888776654 222
Q ss_pred --hHHHHHHHHHhccCCCCcchHHhHHHHhhhc----CCcchHHHHHHHHHh
Q 003439 634 --ELGAVASDRLFEVDSENVGYYVLMSNIYANV----GKWEGVDEVRSLARD 679 (820)
Q Consensus 634 --~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~A~~~~~~m~~ 679 (820)
+.++....++++++|+|.++|..+..++... ++..+|.++.....+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4677788899999999999999999999873 445567777666443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.025 Score=56.64 Aligned_cols=367 Identities=14% Similarity=0.139 Sum_probs=192.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH---HhhhcCCChHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHc
Q 003439 216 ISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL---PVCARSDNILSGLLIHLYIVKHGLEFNLFVS-NNLINMYAK 291 (820)
Q Consensus 216 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~ 291 (820)
-+.+.-+|++..|+.-|....+- |+..|.++. ..|...|+-..|..=+..+++. .||-... -.-...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34445555555555555555432 233333332 2233334444444444444332 3332211 111234567
Q ss_pred cCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHH
Q 003439 292 FGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 371 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 371 (820)
.|.++.|..=|+.+.+.+.. +|...+|.+-+....+ .......+......|+...+......+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 78888888777776553321 1111111111100000 011222333444556666666666666
Q ss_pred HHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc---CCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc
Q 003439 372 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG---LPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 448 (820)
Q Consensus 372 ~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 448 (820)
++.. +-|...+..-..+|...|.+..|..-++. +...++...--+-..+-..|+.+.++...++-.+ +.||.
T Consensus 182 lEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdH 256 (504)
T KOG0624|consen 182 LEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDH 256 (504)
T ss_pred HhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcch
Confidence 5553 66777778888888888888888755543 3445666666666777778888888888887766 77776
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc----cc---cchHH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS----VP---WNAII 521 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~---~~~li 521 (820)
...-..- ..+.+..+.++.|.+ ....+++.++.+-.+...+.++ +. +..+-
T Consensus 257 K~Cf~~Y------KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 257 KLCFPFY------KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHH------HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 4321111 111122222222211 2234555555555554442222 22 34455
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 600 (820)
.+|...|++.+|++.-.+.++ +.|| ..++.--..||.-...++.|+.=|+...+ +.++..- .|. -
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e---~n~sn~~--------~re-G 380 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE---LNESNTR--------ARE-G 380 (504)
T ss_pred ecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcccHH--------HHH-H
Confidence 677778889999998888888 6776 55777788888888888999888887763 3443211 111 2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCc
Q 003439 601 LGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF-EVDSENV 651 (820)
Q Consensus 601 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~ 651 (820)
++.|.++.+..+ +.|- | -++ +-.++-.-.+-.++|+++- +-.|+|.
T Consensus 381 le~Akrlkkqs~-kRDY--Y-KIL-GVkRnAsKqEI~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 381 LERAKRLKKQSG-KRDY--Y-KIL-GVKRNASKQEITKAYRKLAQKWHPDNF 427 (504)
T ss_pred HHHHHHHHHHhc-cchH--H-HHh-hhcccccHHHHHHHHHHHHHhcCCccc
Confidence 345555555543 2221 1 122 2234444556666666653 4667654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00086 Score=77.06 Aligned_cols=142 Identities=10% Similarity=0.063 Sum_probs=114.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-TFVS 554 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 554 (820)
+..+...+-.|.......|+.++|+.+++... +.+...+..++.++.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 45568888889999999999999999999887 34455688889999999999999999999999 578775 5556
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALL 624 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll 624 (820)
+..++.+.|.+++|..+|+++... ..-+...+..+..++-+.|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667888999999999999999852 2223678888999999999999999999987 2344444555444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=51.93 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 242 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 242 (820)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999998887
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.079 Score=60.05 Aligned_cols=210 Identities=10% Similarity=0.081 Sum_probs=116.9
Q ss_pred CChhHHHHHhccCCC--CCcccHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHH
Q 003439 192 GLANVARKLFDDMPV--RDSGSWNAMISGY--CQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIH 267 (820)
Q Consensus 192 g~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 267 (820)
+++..|.+..+...+ || ..|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455555555555432 22 2344444443 4678888888777777655444 6777777777778888888888888
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHccCCHH----HHHHHHhccCCCCchHHHHHHHHHHh-CCChh---------hHHHHH
Q 003439 268 LYIVKHGLEFNLFVSNNLINMYAKFGMMR----HALRVFDQMMERDVVSWNSIIAAYEQ-SNDPI---------TAHGFF 333 (820)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~m~~~d~~~~~~li~~~~~-~g~~~---------~A~~~~ 333 (820)
++..+. .|+......+..+|++.+++. .|.+++...+++--.-|+.+ +.+.+ ...++ -|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHH
Confidence 887765 455667777777788877664 46777776666555556543 33322 22222 234445
Q ss_pred HHHHHcC-CCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc
Q 003439 334 TTMQQAG-IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 406 (820)
Q Consensus 334 ~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 406 (820)
+.+.+.+ -.-+..-...-+..+...|..++|..++..-........+...-+--++++.+++++.+-.++-.+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5554443 111111222223334455666666666532222111333444455566666666666655444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00018 Score=76.34 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
...+|+..+...+++++|.++|+++.+. .|+ ....|+..|...++-.+|.+++++. ...| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666777788889999999888754 354 4455777777788888888888876 3334 5556666677788
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
..++++.|..+++++.++.|++...|..|+.+|...|++++|....+.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0012 Score=76.55 Aligned_cols=132 Identities=9% Similarity=0.084 Sum_probs=81.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
+..+..+|.+.|+.++|..+|+++++. .|+ ....+.+...++.. ++++|.+++...... |
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~ 179 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------F 179 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------H
Confidence 344556666666666666666666663 343 34555566666666 666666666555432 1
Q ss_pred HHcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 596 GRAGHLGMAHNFIQNM----------------------PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m----------------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
....++.++.+++.++ ....-..+|--+-.-|...+++++++.+++.+++.+|.|..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 2222333333333222 222233455555677788889999999999999999999988
Q ss_pred HHhHHHHhhhcCCcch
Q 003439 654 YVLMSNIYANVGKWEG 669 (820)
Q Consensus 654 ~~~l~~~y~~~g~~~~ 669 (820)
..-|+..|. +.+.+
T Consensus 260 ~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 260 REELIRFYK--EKYKD 273 (906)
T ss_pred HHHHHHHHH--HHccC
Confidence 888888776 44444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00041 Score=62.84 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=91.2
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 536 FFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 536 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
.+++.+. ..|+. .....+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666 56654 45666777888999999999999888753 2336678888999999999999999999877 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 614 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 614 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
.| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 45 46688888899999999999999999999999977653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0041 Score=72.28 Aligned_cols=175 Identities=11% Similarity=0.079 Sum_probs=101.2
Q ss_pred CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHH
Q 003439 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAV 387 (820)
Q Consensus 308 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~l 387 (820)
.+...|..|+..|...+++++|.++.+...+. .|+...+- -.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~y-----------------------------------y~~ 71 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISAL-----------------------------------YIS 71 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehH-----------------------------------HHH
Confidence 35567888888888888888888888865543 34433321 111
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHH
Q 003439 388 VDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQG 467 (820)
Q Consensus 388 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a 467 (820)
...|.+.++.+++..+ .++.......++.-...+...|.. ..-+...+..+..+|.+.|+.+++
T Consensus 72 G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 72 GILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred HHHHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHH
Confidence 1133333333333222 222223333333222223333333 222333555666667777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 468 IKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 468 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
..+++++++.. +.|+.+.|-+...|+.. ++++|.+++.+.. .-|...+++.++.++|.++.. ..|
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~ 200 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNS 200 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHh--cCc
Confidence 77777777766 44677777777778777 8888877776543 335666677777777777777 345
Q ss_pred Chh
Q 003439 548 DHI 550 (820)
Q Consensus 548 ~~~ 550 (820)
+.+
T Consensus 201 ~d~ 203 (906)
T PRK14720 201 DDF 203 (906)
T ss_pred ccc
Confidence 443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.7e-05 Score=50.35 Aligned_cols=34 Identities=29% Similarity=0.642 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC
Q 003439 310 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQP 343 (820)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 343 (820)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.2e-05 Score=48.83 Aligned_cols=31 Identities=48% Similarity=0.942 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 003439 210 GSWNAMISGYCQSGNAVEALDILDEMRLEGV 240 (820)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 240 (820)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.11 Score=55.61 Aligned_cols=210 Identities=12% Similarity=0.118 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC----CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 465 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG---RIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
+++..+++..+..-...+..+|.++.+---..- ..+.....+++.. ..-...|-.++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554333334444444433211111 1333344444433 223345888888888888899999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 003439 538 RQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM---PV 613 (820)
Q Consensus 538 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~ 613 (820)
.+..+.+..+ +.....+++.-++ +++.+-|.++|+.=..++|-.| .-..+.++-+.+-++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 5556777777655 5788999999987666655443 34567889999999999999999987 23
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----cchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 614 RPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN----VGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 614 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
.|| ..+|..+|.--..-||+..+.++-++....-|.+ ...-..+.+.|.=.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 3499999999999999999999998887655522 122345666777777766544434333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00085 Score=71.25 Aligned_cols=126 Identities=11% Similarity=0.102 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcC
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSG 563 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 563 (820)
...+|+..+...++++.|.++|+++.+.+...+..++..+...++-.+|++++++.+.. .| |...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666777888999999999988777766777888888888888999999988874 45 4445555556688889
Q ss_pred CHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 003439 564 LVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRP 615 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 615 (820)
+++.|+++.+++. ...|+. .+|..|...|.+.|++++|+..++.+|..|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999988887 456754 588999999999999999999998887543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00091 Score=61.35 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMEL 635 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 635 (820)
.++...+.+.++.+...++-.| .....-.+...+...|++++|.+.|+.. ...||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555556555655554422221 1122223345555666666666666655 112332 234445555666677777
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
|+..++.. .-.+-.+..+..++++|.+.|++++|...|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666542 222224445556777777777777777776653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00032 Score=74.84 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNME 634 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 634 (820)
.+...|++++|++.|..+.+ ..| +...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555554442 122 2334444444444455555555444444 22332 234444444444445555
Q ss_pred HHHHHHHHHhccCCCCcchHH
Q 003439 635 LGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+|+..++++++++|+++....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555554444333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.016 Score=59.01 Aligned_cols=246 Identities=15% Similarity=0.168 Sum_probs=150.0
Q ss_pred cCChHHHHHHHHhhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 425 NGLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
.|++++|.+-|+.|.. .|.. .-+..+.-...+.|+.+.|+++-+..-..-. .-.....+.+...+..|+++.|
T Consensus 133 eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 133 EGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred cCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHH
Confidence 3555555555555544 1111 1122333333455666666666555443321 1234556667777777777777
Q ss_pred HHHHhhCC-----CCCccc--cchHHHHHH---hcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHH
Q 003439 503 MSLFYQVP-----RSSSVP--WNAIISCHG---IHGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 503 ~~~~~~~~-----~~~~~~--~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 571 (820)
+++.+.-. .+|+.- --.|+.+-+ -..+...|...-.+..+ +.||-+ .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 77776543 333221 122222211 13356666666666655 788876 444456789999999999999
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHH----HHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 572 FHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH----NFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 572 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~----~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
++.+.+ ..|.+..+.. ..+.|.|+-.... +-++. ++|| ..+..++..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALL--YVRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHH--HHHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999884 4666655433 3445666432211 11233 3554 446677778888999999999999999999
Q ss_pred CCCCcchHHhHHHHhhhc-CCcchHHHHHHHHHhCCCCcCCc
Q 003439 647 DSENVGYYVLMSNIYANV-GKWEGVDEVRSLARDRGLKKTPG 687 (820)
Q Consensus 647 ~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~~~~~~~~ 687 (820)
.| ..+.|.+|+++-... |+-.++...+.+.... ..+|.
T Consensus 359 ~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPa 397 (531)
T COG3898 359 AP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPA 397 (531)
T ss_pred Cc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCc
Confidence 99 577889999987655 9888888877766543 34454
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00037 Score=57.93 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
+..+...+...|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888877765 33343 3567777777788888888888888888888877777888888888888
Q ss_pred CcchHHHHHHHHHh
Q 003439 666 KWEGVDEVRSLARD 679 (820)
Q Consensus 666 ~~~~A~~~~~~m~~ 679 (820)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888777654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.2e-05 Score=57.95 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC-CcchHHHHHHHHHhC
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG-KWEGVDEVRSLARDR 680 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~~ 680 (820)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999 799999999887654
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00062 Score=67.09 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 635 (820)
..+.+++.+|+..|...+ .+.|+- .-|..-..+|.+.|.++.|.+--+.. .+.|... +|..|.-+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677777777777766 456543 44444567788888888887766655 5666655 88999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
|++.|+++++++|++.+....|-.+--+.+.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999888766666554444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.9e-05 Score=61.35 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHH
Q 003439 598 AGHLGMAHNFIQNM-PVRP---DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 598 ~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 673 (820)
.|++++|+.+++++ ...| +...|-.+...+.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666555 1122 344555567777777777777777777 666666666666777777777888777777
Q ss_pred HHH
Q 003439 674 RSL 676 (820)
Q Consensus 674 ~~~ 676 (820)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00034 Score=68.87 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=78.6
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
+-+.+.+++++|+..|.++ .+.| |.+.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+-+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456789999999999887 6666 5667777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003439 671 DEVRSLARDR 680 (820)
Q Consensus 671 ~~~~~~m~~~ 680 (820)
.+.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.2e-05 Score=47.22 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHHHHHcCC
Q 003439 311 VSWNSIIAAYEQSNDPITAHGFFTTMQQAGI 341 (820)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 341 (820)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999999888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=57.95 Aligned_cols=101 Identities=8% Similarity=0.038 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLG 625 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 625 (820)
+..+...+...|++++|.+.|..+.+.+.-.| ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555556666666666665554321111 1233444556666666666666666554 22222 335556666
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+...|+.+.|...++++++..|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666667777777777777776666544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0008 Score=59.20 Aligned_cols=96 Identities=16% Similarity=0.018 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhH
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLM 657 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 657 (820)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788899999999999999887 33343 3467778889999999999999999999998875 4567889
Q ss_pred HHHhhhcCCcchHHHHHHHHHhCC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
+.+|.+.|++++|...++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999988763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0092 Score=57.84 Aligned_cols=147 Identities=11% Similarity=0.027 Sum_probs=101.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH----HH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF----GR 597 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~----~~ 597 (820)
..|...|++++|++..+... +......=...+.+..+++-|.+.++.|.+ +. +..+.+.|..++ .-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 34667777777777766511 111111122334556677788887777763 22 233444444444 34
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHH-HHH
Q 003439 598 AGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD-EVR 674 (820)
Q Consensus 598 ~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~ 674 (820)
.+.+.+|.-+|++| +..|+..+.+.+...+...|++++|+.+++.++..+++++.+...++-.--..|.-.++. +..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56788999999998 367888899999999999999999999999999999999999888887777788876665 344
Q ss_pred HHHH
Q 003439 675 SLAR 678 (820)
Q Consensus 675 ~~m~ 678 (820)
.+.+
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0025 Score=71.06 Aligned_cols=140 Identities=12% Similarity=0.036 Sum_probs=65.7
Q ss_pred CCCccccchHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcC--------CHHHHHHHHHHhH
Q 003439 511 RSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSG--------LVSEGQRYFHMMQ 576 (820)
Q Consensus 511 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g--------~~~~a~~~~~~m~ 576 (820)
..|...|...+.+.... ++..+|+.+|++.++ ..||.. .+..+..++.... ++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44555566666554322 236688999999988 678753 4444433322110 1112222222211
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 577 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 577 ~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10011112234444444444445555555555544 34444445555555555555555555555555555554443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0041 Score=57.02 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=73.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHHcC
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL--KHYGCMVDLFGRAG 599 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g 599 (820)
..++...+...++++... .|+. .....+...+...|++++|...|+..... ...|.. ...-.|...+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcC
Confidence 366777777777777774 3333 23333445677778888888888777754 222221 23344566777788
Q ss_pred CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 600 HLGMAHNFIQNMPVR-PDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 600 ~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
++++|+..++..+.. .....+..+...+...|+.++|+..|+++
T Consensus 100 ~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 100 QYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888888888765322 23446666777788888888888888765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00026 Score=54.60 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888888888888888888888888877654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.073 Score=55.39 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 566 (820)
+..|.-+...|+...|.++-.+..-+|..-|...+.+++..+++++-.++... +-.++-|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455566778888999998888888888899999999999998876665432 223477888889999999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGA 626 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~ 626 (820)
+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+..-
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 988887542 12456788889999998887765543 44444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0068 Score=58.24 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHhhCC---C-----CCcc-ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCH
Q 003439 496 CGRIDDAMSLFYQVP---R-----SSSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLV 565 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~-----~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 565 (820)
..+.++..+++.++. + ++.. .|..++-+....|+.+.|...++++... + |+..-...+ .--+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 457888888888776 1 1111 1444556667789999999999999886 3 665433222 2235567999
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 566 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 566 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
++|.++++.+.++ . +.|..+|---+-++-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999865 2 335556666666666777777887766554 45678999999999999999999999999999
Q ss_pred hccCCCCcchHHhHHHHhhhcCCcc---hHHHHHHHHHhCC
Q 003439 644 FEVDSENVGYYVLMSNIYANVGKWE---GVDEVRSLARDRG 681 (820)
Q Consensus 644 ~~~~p~~~~~~~~l~~~y~~~g~~~---~A~~~~~~m~~~~ 681 (820)
+-+.|.++-.+..+++++...|-.+ -|.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988887644 5667777776653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=56.67 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=87.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVS 566 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~ 566 (820)
..|...|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+- -+..|.+-|.+++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 3456666666666666553222222211 23344555666777777777662 244555555555443 34567
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNM-ELGAVASDRL 643 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 643 (820)
+|.-+|++|.++ ..|+..+.+.+..+....|++++|..+++.. ....++.+...++-.-...|.. +--.+...++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 777777777642 4566666666666666777777777777766 2223444555555444444443 4445556666
Q ss_pred hccCCCCc
Q 003439 644 FEVDSENV 651 (820)
Q Consensus 644 ~~~~p~~~ 651 (820)
....|..+
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 66666543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0039 Score=59.11 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=64.7
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVD 593 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~ 593 (820)
+..+...+...|++++|+..|++.++....|+ ...+..+...+.+.|++++|...+.+..+. .| +...+..+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 114 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 45555555556666666666666655322221 134555555556666666666665555432 23 2333444444
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 594 LFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
+|...|+...+..-++.. ...+++|.+.++++++++|++ |..+...+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555555444433222211 012567888888888888876 4444444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=62.80 Aligned_cols=94 Identities=13% Similarity=-0.124 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566667777788888888888776 23232 3478889999999999999999999999999999888888888
Q ss_pred Hhh-------hcCCcchHHHHHHHHH
Q 003439 660 IYA-------NVGKWEGVDEVRSLAR 678 (820)
Q Consensus 660 ~y~-------~~g~~~~A~~~~~~m~ 678 (820)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 7888887766665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00074 Score=52.00 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=50.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|+..++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778899999999999887 556754 4999999999999999999999999999999864
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.014 Score=56.20 Aligned_cols=192 Identities=13% Similarity=0.177 Sum_probs=144.0
Q ss_pred cCChhHHHHHHHHHHH---hC-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchH---HHHHHhcCChHH
Q 003439 461 VGALRQGIKIHARVIK---NC-LCFDVF-VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI---ISCHGIHGQGDK 532 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~---~g-~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~ 532 (820)
..+.++..+++..++. .| ..++.. +|..++-+..-+|+.+.|...++.+...-.-++... ..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3577888888877754 34 555554 455556666778999999999988763333333222 123456899999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 533 ALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 533 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
|+++++..++.. +.|.+++..=+...-..|.--+|++-+....+. +.-|.+.|.-+.+.|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999975 446678887777778888888999988888764 5678899999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCcchHH
Q 003439 612 PVRP-DASIWGALLGACRIHG---NMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 612 ~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
-..| ++..+..+...+...| +++.+.+.|++++++.|.+...+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 3455 4456677777765554 778999999999999996554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0016 Score=61.69 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
.+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555555666666666666666655 22222 347777888888888888888888888888888888888888888
Q ss_pred hhcCC
Q 003439 662 ANVGK 666 (820)
Q Consensus 662 ~~~g~ 666 (820)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 87776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0028 Score=67.60 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 598 (820)
...+...|++++|++.|+++++ ..|+ ...|..+..++...|++++|+..++.+.. +.| +...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 4556778999999999999999 4665 45788888899999999999999999874 455 567888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 003439 599 GHLGMAHNFIQNM-PVRPDASIWGALLG 625 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~~~~~~~ll~ 625 (820)
|++++|...|++. .+.|+......++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 56666554444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.028 Score=60.76 Aligned_cols=166 Identities=15% Similarity=0.205 Sum_probs=90.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHH
Q 003439 389 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 468 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 468 (820)
+.++-.|.+.+|.++|.+ +|.-..|+++|..|+- --..+-+...|..++-+
T Consensus 640 ~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-----------FD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-----------FDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-----------HHHHHHHhhcCChHHHH
Confidence 344556677777777643 4666667766666543 01122233444444444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 548 (820)
.+.+.-.+.. -++.-=.+...|+...|+.++|..+. ..+|-.+-++++-+++-. .+
T Consensus 691 mL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~e 746 (1081)
T KOG1538|consen 691 MLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AE 746 (1081)
T ss_pred HHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hh
Confidence 3333221110 01111123445666677777776554 445555555555544432 23
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH
Q 003439 549 HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDA 617 (820)
Q Consensus 549 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~ 617 (820)
..+...+..-+.+...+.-|-++|..|-.. ..++++....|+++||..+-++.| +.||+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 345555555555666677778888776522 356777778888888888888874 44443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0038 Score=64.05 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=73.5
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
+...+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|.-...|..-++.+...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999876 4444 444566666677889999999999999999999888899999999999999
Q ss_pred cchHHHHHHHHHhC
Q 003439 667 WEGVDEVRSLARDR 680 (820)
Q Consensus 667 ~~~A~~~~~~m~~~ 680 (820)
|++|.+.+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0046 Score=51.13 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 003439 557 TACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM 633 (820)
Q Consensus 557 ~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 633 (820)
..+...|++++|..+++.+.+. .| +...+..+...|...|++++|.+.+++. ...| +..+|..+...+...|+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3334444444444444444321 12 1233444444455555555555555443 1222 223555566666666666
Q ss_pred hHHHHHHHHHhccCC
Q 003439 634 ELGAVASDRLFEVDS 648 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p 648 (820)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666666555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=53.15 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
...-+-..|++++|..+|+-+ -..| +..-|..|...|...++++.|+..|..+..++++|+..+...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344455789999999999876 2222 45578999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 003439 669 GVDEVRSLARD 679 (820)
Q Consensus 669 ~A~~~~~~m~~ 679 (820)
+|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00061 Score=53.03 Aligned_cols=53 Identities=11% Similarity=0.255 Sum_probs=39.8
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|+..++++++.+|++......++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888777766544
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.37 Score=50.22 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=83.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCCh
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGAL 464 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~ 464 (820)
+..|.-+...|+...|.++-.+..-+|...|-..|.+|+..++|++-.++-.. +-.++-|..++.+|.+.|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCCH
Confidence 44456667789999999999999999999999999999999999987765432 12358889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 465 RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
.+|..+... ..+..-+.+|.++|++.+|.+.-
T Consensus 254 ~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 988887665 12256788999999999987653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.66 Score=51.88 Aligned_cols=361 Identities=11% Similarity=0.054 Sum_probs=186.7
Q ss_pred HHhCCChhHHHHHHHHH--------HHCCCCCChHHHHh-----HHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHH
Q 003439 219 YCQSGNAVEALDILDEM--------RLEGVSMDPITVAS-----ILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNL 285 (820)
Q Consensus 219 ~~~~g~~~~A~~l~~~m--------~~~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 285 (820)
+.+.-++++-+.+.++. ..-|+..+..-|.. +|+-+...+.+..|.++-..+-..-..- ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 34444555544444333 34566666655544 3556666777777877766653221111 5677777
Q ss_pred HHHHHccCC---HHHHHHHHhccCC--CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCC----CCCcchHHHHHHHHH
Q 003439 286 INMYAKFGM---MRHALRVFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGI----QPDLLTLVSLTSIVA 356 (820)
Q Consensus 286 i~~y~~~g~---~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~~~ll~a~~ 356 (820)
..-+.+..+ -+.+..+-+++.. .+-++|..+..--.+.|+++-|..+++.=...+- -.+..-+...+.-+.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 777776633 3334444445544 4667888888888889999988887764222111 112233444455555
Q ss_pred hcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC-CchHHHHHHHHHHHcCChHHHHHHH
Q 003439 357 QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQNGLASEAIEVF 435 (820)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~ 435 (820)
..|+.+...++.-.+.+.- . .-+...-..+...|..++.+.... |.. . +..+-+.++-.+++.-|
T Consensus 558 es~d~~Li~~Vllhlk~~~----~------~s~l~~~l~~~p~a~~lY~~~~r~~~~~---~-l~d~y~q~dn~~~~a~~ 623 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKL----N------RSSLFMTLRNQPLALSLYRQFMRHQDRA---T-LYDFYNQDDNHQALASF 623 (829)
T ss_pred hcCCchhHHHHHHHHHHHH----H------HHHHHHHHHhchhhhHHHHHHHHhhchh---h-hhhhhhcccchhhhhhh
Confidence 5666555555444433321 0 000000111222233333222111 100 0 11111222222222222
Q ss_pred H--hhhhcCCCCCCcccHhhHHHHhhccCChhHHHH----------HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 436 Q--MMEECNEINPNQGTYVSILPAYSHVGALRQGIK----------IHARVI-KNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 436 ~--~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~----------i~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
. .......+.+-.......-++|++......+.+ +.+.+. +.|....-.+.+--+.-+...|+..+|
T Consensus 624 ~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a 703 (829)
T KOG2280|consen 624 HLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRA 703 (829)
T ss_pred hhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHH
Confidence 1 100000011222223334445555444222111 111121 123222222333444455667888888
Q ss_pred HHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 503 MSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 503 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++-.+..-+|-..|---+.+++..+++++-.++-+.+. + ++-|.-...+|.+.|+.++|.+++.+.. |..
T Consensus 704 ~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~ 774 (829)
T KOG2280|consen 704 EQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ 774 (829)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC---ChH
Confidence 888888888888888888888888888887666554432 2 4566677888888888888888875432 221
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
-.+.+|.+.|++.+|.++--+
T Consensus 775 -------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 775 -------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -------HHHHHHHHhccHHHHHHHHHH
Confidence 467788888888888776543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0027 Score=63.12 Aligned_cols=100 Identities=11% Similarity=0.035 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG---NMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
-|.+.|--|...|.+.|+.+.|..-|.+. .+.| +...+..+..++.... +..++..++++++.++|.|......|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 36788999999999999999999999887 4444 4557777777755443 45689999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
+..+...|++.+|...++.|.+...
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=52.18 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=50.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...|.+.+++++|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999998887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.06 Score=49.30 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=109.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-CCChhHHHHHHHHHHHcCCHHH
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI-KPHLKHYGCMVDLFGRAGHLGM 603 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~e 603 (820)
.+.=+++..++-..+-.+ +.|....-..|..+....|+..||...|++... |+ .-|....-.+..+....++..+
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHH
Confidence 333444444443333333 567777777888999999999999999988774 54 3456667777778888899999
Q ss_pred HHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 604 AHNFIQNM-P-----VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 604 A~~~~~~m-~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
|...+++. . -.||.. ..+...+...|..+.|+..|+.++..-| ++..-...+.++.++|+.++|..-+...
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99988876 2 234443 3566778899999999999999999888 5666777888899999999887655554
Q ss_pred Hh
Q 003439 678 RD 679 (820)
Q Consensus 678 ~~ 679 (820)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.15 Score=55.37 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=97.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcc
Q 003439 267 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLL 346 (820)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 346 (820)
++.+.+.|-.|+.... ...++-.|++.+|.++|.+ +|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 3445556655655432 3445556888888887765 45555666666665321
Q ss_pred hHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcC
Q 003439 347 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNG 426 (820)
Q Consensus 347 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 426 (820)
-...-+...|+.++-+.+...-.. ...+..--.+-..++...|+.++|..+. ..+|
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~---WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~g 730 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRAD---WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHG 730 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHH---HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hccc
Confidence 011112222222222222211111 1111111133445555566666665443 2233
Q ss_pred ChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 427 LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 427 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
-.+-++++=+++.. .+..+...+-..+-+...+..|-++|..|-+. .+++++....+++++|..+-
T Consensus 731 W~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 731 WVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred HHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhh
Confidence 33334444333322 22333444444445556666677776655332 35677777788888888887
Q ss_pred hhCCCCCccccchHHHHHHhcCChHHHHH
Q 003439 507 YQVPRSSSVPWNAIISCHGIHGQGDKALN 535 (820)
Q Consensus 507 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 535 (820)
++.++--...|---..-++...++++|.+
T Consensus 797 e~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 797 EKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred hhCccccccccchHHHHhhhhhhHHHHHH
Confidence 77774333333333344444555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=60.72 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=95.7
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 594 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 594 (820)
.|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46666777777777888888888887532 2233445444444 333577777999999988764 4456678888999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+.+.|+.+.|..+|++. ..-|. ..+|...+.--.++|+++....+.+++.+.-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999987 22233 349999999999999999999999999998886443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=55.94 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=27.2
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|++++|.+.++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444455555555555555544211111 1234444444555555555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0024 Score=52.11 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVR-PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA 604 (820)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|.++++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777764221 1233444466677777777777777765 2 22222 22223345666666777777
Q ss_pred HHHHHh
Q 003439 605 HNFIQN 610 (820)
Q Consensus 605 ~~~~~~ 610 (820)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=65.60 Aligned_cols=134 Identities=12% Similarity=0.086 Sum_probs=97.8
Q ss_pred CCCChhHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHc--------CCHHHHHHHHHh
Q 003439 545 VRPDHITFVSLLTACSHS-----GLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRA--------GHLGMAHNFIQN 610 (820)
Q Consensus 545 ~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~--------g~~~eA~~~~~~ 610 (820)
.+.|...|...+.+.... +..++|..+|++.. .+.|+- ..|..+..+|... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455667888888875442 23778999999888 457874 3444443333221 234455555555
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 611 M---P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 611 m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
. + ...+..+|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.++++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 1 233556788887777788999999999999999999 578999999999999999999999999876643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0019 Score=50.37 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHG-NMELGAVASDRLFEVDS 648 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 648 (820)
+...|..+...+.+.|++++|++.|++. ...|+ ..+|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777788888888888888888876 45565 448888999999999 79999999999999887
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00042 Score=45.01 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=30.4
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHH
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 671 (820)
|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.85 E-value=1.3 Score=50.65 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=85.1
Q ss_pred cchHHHHHHhcCChH---HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 517 WNAIISCHGIHGQGD---KALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 517 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
-|.|+..+.+.++.. +|+-+++.-.. ..| |..+-..+|..|+-.|-+..|.+.|..+.-+ .|+.|..-|- +.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 567778888877765 55555555555 234 4456667888888889999999988888655 6666543332 23
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHhHHHHh
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PV----RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIY 661 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y 661 (820)
..+.-.|++..+...++.. .+ ..+.. -+|..-.++|.+..-.+...---.+. ++. .-....+..
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~---eyI~~AYr~g~ySkI~em~~fr~rL~--~S~q~~a~~VE~~~l~ll 589 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETP---EYIALAYRRGAYSKIPEMLAFRDRLM--HSLQKWACRVENLQLSLL 589 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhH---HHHHHHHHcCchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4445566766666665543 10 11111 12333345666655444322111111 111 112445566
Q ss_pred hhcCCcchHHHHHHHHH
Q 003439 662 ANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~ 678 (820)
...++.++-......|.
T Consensus 590 ~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 590 CNADRGTQLLKLLESMK 606 (932)
T ss_pred HhCCcHHHHHHHHhccc
Confidence 66677766666666665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=49.31 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=68.1
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChHHHHhHHHhhhcCC--------ChHHHHHHHHHHHHhCCCccHHH
Q 003439 211 SWNAMISGYCQSGNAVEALDILDEMRLEGV-SMDPITVASILPVCARSD--------NILSGLLIHLYIVKHGLEFNLFV 281 (820)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 281 (820)
+-...|.-+..++++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777778999999999999999999 999999999999887653 34567788999999999999999
Q ss_pred HHHHHHHHHc
Q 003439 282 SNNLINMYAK 291 (820)
Q Consensus 282 ~~~li~~y~~ 291 (820)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0017 Score=50.41 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=29.5
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
..|++++|.++|+++ ...| +..++..+...|...|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 344555555555544 2223 333444555555555555555555555555555544443333
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.11 Score=53.68 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNMP---VR-----PDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
.+..+..++.+.|++++|.++|++.. .+ .+.. .+-..+-.+...||...|...+++..+.+|.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34445566667777777777776541 11 1111 1112222344567777888888887777764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.032 Score=51.07 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=93.0
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC-
Q 003439 574 MMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM---PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE- 649 (820)
Q Consensus 574 ~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 649 (820)
+..+...+.|+..+--.|...+.+.|+..||...|++. .+..|......+.++....++..+|...++.+.+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33344467888888889999999999999999999987 45668888889999999999999999999999998875
Q ss_pred -CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 650 -NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 650 -~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+.....++..|...|+.++|+..|+...+.
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5667788999999999999999999998875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.95 Score=46.69 Aligned_cols=155 Identities=12% Similarity=0.175 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhcc-CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHV-GALRQGIKIHARVIKNCLCFDVFVATCLVDMYG 494 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~-~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 494 (820)
...+..|...|++..|-..+.++-+ .|... |+++.|.+.|..+.+ .|.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~----------------~ye~~~~d~e~Ai~~Y~~A~~---------------~y~ 146 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAE----------------IYEEQLGDYEKAIEYYQKAAE---------------LYE 146 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH----------------HHCCTT--HHHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHHH---------------HHH
Confidence 3345666777777777666665544 34444 666777666655443 233
Q ss_pred hcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hh-HHHHHHHHHHhcCCHHHH
Q 003439 495 KCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-----HI-TFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~-t~~~ll~a~~~~g~~~~a 568 (820)
..|....+.+++ ..+...+.+.|++++|+++|++....-...+ .. .|...+-.+...|++..|
T Consensus 147 ~e~~~~~a~~~~-----------~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 147 QEGSPHSAAECL-----------LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HTT-HHHHHHHH-----------HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HCCChhhHHHHH-----------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 333333333332 2345566777777777777777765432211 11 223333355667788888
Q ss_pred HHHHHHhHHhh-CCCCC--hhHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 003439 569 QRYFHMMQEEF-GIKPH--LKHYGCMVDLFGR--AGHLGMAHNFIQNMP 612 (820)
Q Consensus 569 ~~~~~~m~~~~-g~~p~--~~~~~~li~~~~~--~g~~~eA~~~~~~m~ 612 (820)
.+.++...... ++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 88877765221 12112 2334455555543 235666666666663
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.032 Score=50.47 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHS 562 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 562 (820)
-++...+...|++++|.++|+-+. ..+..-|-.|..++-..|++++|+..|..... +.|| ...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHc
Confidence 344555667888888888888766 34445588888888888999999999988888 4564 45777788888888
Q ss_pred CCHHHHHHHHHHhHHhhCCCC
Q 003439 563 GLVSEGQRYFHMMQEEFGIKP 583 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p 583 (820)
|+.+.|++.|+......+-.|
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CCHHHHHHHHHHHHHHhccCh
Confidence 999999998887775544333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0051 Score=65.05 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
..++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444555555555555555442 334432 13444555555555555555555555444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=60.97 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCcccHhhHHHHhhccCChhHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccccch
Q 003439 446 PNQGTYVSILPAYSHVGALRQGIKIHARVIKN--CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNA 519 (820)
Q Consensus 446 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~ 519 (820)
.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..++..=. -+|..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555554444332 111122233345555555554444444443322 234444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 559 (820)
|+..+.+.|++..|.++..+|...+...+..|+..-+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 4444444444444444444444444444444444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=58.70 Aligned_cols=88 Identities=14% Similarity=-0.002 Sum_probs=46.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhc
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANV 664 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~ 664 (820)
..+.+.|++++|...|+.. ...|+. .++--+...|...|++++|...|+++++..|++ +.++..++.+|...
T Consensus 151 ~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 151 ALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 3333445555555555444 122221 244445556666666666666666666655553 33334456666666
Q ss_pred CCcchHHHHHHHHHhC
Q 003439 665 GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~ 680 (820)
|++++|.++++...+.
T Consensus 231 g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 231 GDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.041 Score=47.93 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=67.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFG 596 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 596 (820)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876653 4677788899999999999999998876532211 1122233445677
Q ss_pred HcCCHHHHHHHHHh
Q 003439 597 RAGHLGMAHNFIQN 610 (820)
Q Consensus 597 ~~g~~~eA~~~~~~ 610 (820)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.5 Score=46.36 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred cHHHHHHHH--HhCCChhHHHHHHHHHHHC--CCCC-----------ChHHH-HhHHHhhhcCCChHHHHHHHHHHHHhC
Q 003439 211 SWNAMISGY--CQSGNAVEALDILDEMRLE--GVSM-----------DPITV-ASILPVCARSDNILSGLLIHLYIVKHG 274 (820)
Q Consensus 211 ~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p-----------~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (820)
.|-.+..++ -+.+.+.+|++.+..-.++ +-.| +.+.+ +..+..+...|.+.+|+.+++.+...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444433 3567777777777665543 2221 11122 334566678888888888888776644
Q ss_pred C----CccHHHHHHHHHHHHcc
Q 003439 275 L----EFNLFVSNNLINMYAKF 292 (820)
Q Consensus 275 ~----~~~~~~~~~li~~y~~~ 292 (820)
+ .-+..+||.++-++++.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHH
Confidence 3 46788888877777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.03 Score=46.97 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC--------CHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGV-RPDHITFVSLLTACSHSG--------LVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+++.|... +++|+.++|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 44455556888889999999999999 889999999998876543 344567777778755 78888888888
Q ss_pred HHHHHHH
Q 003439 591 MVDLFGR 597 (820)
Q Consensus 591 li~~~~~ 597 (820)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.041 Score=58.97 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=27.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhC
Q 003439 315 SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRG 375 (820)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 375 (820)
++|+.|.+.|..++++.+++.=...|+-||.+|++.+|..+.+.|++..|.++...|+..+
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 4444444444444444444444444444444444444444444444444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0047 Score=43.05 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 67889999999999999999999999999999998887764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.028 Score=57.86 Aligned_cols=129 Identities=9% Similarity=0.107 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR-AGHLGMAHNFIQNM--PVRPDASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~ 626 (820)
.+|..++....+.+..+.|..+|....+. -..+..+|-....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788889999999999999999999732 22344566666666445 56666699999987 345577899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCc---chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|+.+.|+.+|++++..-|.+. ..|...++.-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998776554 47778888889999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.26 Score=51.80 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---Cccc----cchHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVPRS---SSVP----WNAIISCHGI---HGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
++-.|-...+++...++.+.+... ++.. -....-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333466777777777777777632 1111 1122334445 78889999998886666667777788777776
Q ss_pred HHh---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH----HHHHHH---Hh-C----CCC--C
Q 003439 559 CSH---------SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG----MAHNFI---QN-M----PVR--P 615 (820)
Q Consensus 559 ~~~---------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~----eA~~~~---~~-m----~~~--p 615 (820)
|-. ....++|.+.|.+. +.+.|+..+--.++-++...|... +..++- .. . ... .
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 532 22466777777643 356676655444555555555322 222222 11 1 122 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
|--.+.+++.++.-.||.+.|.+++++++.+.|+.-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 344556889999999999999999999999987654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0097 Score=46.92 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=51.3
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
..|.+.+++++|.+.++.+ ...|+ ...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677888888888888887 45554 4578888888999999999999999999999977665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.028 Score=53.30 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=67.5
Q ss_pred HHHhccC--CCCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcC-------------
Q 003439 198 RKLFDDM--PVRDSGSWNAMISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARS------------- 257 (820)
Q Consensus 198 ~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 257 (820)
...|+.. ..+|..+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345666666666666543 55666666777777888888888888888776542
Q ss_pred ---CChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 258 ---DNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 258 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
.+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345678888888888888888888888888866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.026 Score=58.48 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+++.|...|.+.+++..|+....++++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3466677778889999999999999999999999999999999999999999999999999865
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.044 Score=47.71 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=54.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHhHHHHhhh
Q 003439 592 VDLFGRAGHLGMAHNFIQNM---PVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSE---NVGYYVLMSNIYAN 663 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 663 (820)
..++-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..++++.++-.|+ +....+.++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666654 11111 225556667777777777777777777776666 55556666777777
Q ss_pred cCCcchHHHHHHHH
Q 003439 664 VGKWEGVDEVRSLA 677 (820)
Q Consensus 664 ~g~~~~A~~~~~~m 677 (820)
.|+.+||.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 78887777665443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.23 Score=49.75 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=99.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccc------cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh-
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSH- 561 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~- 561 (820)
..+.+.|++++|.+.|+++....+.+ .-.++.+|.+.+++++|+..|++.++ ..|+. +-+...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHhhh
Confidence 33455677777777777776322222 12345666778888888888888887 34543 344444444331
Q ss_pred -cC---------------C---HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003439 562 -SG---------------L---VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 622 (820)
Q Consensus 562 -~g---------------~---~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 622 (820)
.+ + ..+|.+.|+.+.+++ |+ ..-..+|...+..+...--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 11 1 223444444444332 32 2233444443333310000000 12
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
...-|.+.|.+.-|+.-++.+++--|+. ..+...+.++|...|..++|..+.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3445788899999999999999877764 3456678899999999999998877654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.024 Score=53.74 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----------------CCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS----------------GLVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
.|..+=....++.|.+-|+.-|..+|+.||+.+=+. .+.+-|++++++|.. +|+.||.+++..
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ 143 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMEN-NGVMPDKETEQM 143 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 466677777778888888888888888888776442 234568889999974 499999999999
Q ss_pred HHHHHHHcCC
Q 003439 591 MVDLFGRAGH 600 (820)
Q Consensus 591 li~~~~~~g~ 600 (820)
+++.+++.+.
T Consensus 144 ll~iFG~~s~ 153 (228)
T PF06239_consen 144 LLNIFGRKSH 153 (228)
T ss_pred HHHHhccccH
Confidence 9998887764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=3.1 Score=46.24 Aligned_cols=225 Identities=18% Similarity=0.180 Sum_probs=101.5
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 456 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 456 (820)
++.|....-.+.+|+.+.|.-++|.+.|-+-..| .+-+..+...+++.+|.++-++.+- |...|+ |.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW~~avelaq~~~l-----~qv~tl---ia 914 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQWGEAVELAQRFQL-----PQVQTL---IA 914 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHH---HH
Confidence 4555666666777777777777776666544333 1233445555666666666554332 222221 11
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccchHHHHHHh----cCC
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHGI----HGQ 529 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~----~g~ 529 (820)
..|-++++ +. .+ ---|.++.+.|+.=+|-+++.+|.++ .-++|-.+=..|.- ..+
T Consensus 915 --------k~aaqll~---~~------~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 915 --------KQAAQLLA---DA------NH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred --------HHHHHHHh---hc------ch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 01111111 11 01 11356677777777777777777622 22333332222221 123
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 530 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 530 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
..++++-.++....|...|... +...|...++-++.+...+ -....|+-.|..--...|+++.|++.--
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 3444444444444454333221 1222333333333332211 1123444445555566788888876533
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 610 NM----PVRPDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 610 ~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
.+ .+-|-..+|..|.-+-+....+...-++|-++
T Consensus 1046 ~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1046 ILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred hhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 33 12344445554443333333333344444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.37 Score=46.85 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=112.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCC--CCchHH--------HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhh
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPV--KDVISW--------NTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVS 453 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~--------~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ 453 (820)
+++|...|.-..-+++-...|+.-.. ..+..| +.++..+...|.+.-.+.++++..+ ....-+......
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHH
Confidence 46677777666666666666654332 223333 4566666667788888888888877 544556666777
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHH-----HHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 454 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC-----LVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 454 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
+.+.-.+.|+.+.|...++...+..-..+....+. ....|.-..++..|...|.+++ ..|++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 78888888999999999988776433333333333 3344666778888888888877 344555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFV 553 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 553 (820)
-.|+..+|++..+.|.+ ..|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 67888999999999988 456554433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.042 Score=47.10 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=73.0
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc----hHHhHHHHhhhcCCc
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG----YYVLMSNIYANVGKW 667 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~ 667 (820)
+++..|++++|++.|.+. .+- .....||.-..+++-+|+.++|..-+++++++.-+... .|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567789999999998876 333 36778999999999999999999999999997643322 577788899999999
Q ss_pred chHHHHHHHHHhCCC
Q 003439 668 EGVDEVRSLARDRGL 682 (820)
Q Consensus 668 ~~A~~~~~~m~~~~~ 682 (820)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999999887764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.4 Score=43.88 Aligned_cols=212 Identities=14% Similarity=0.134 Sum_probs=117.1
Q ss_pred hcCCHHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccH--hhHHHHhhc---cCCh
Q 003439 393 KLGIINSACAVFEGLPVK---DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTY--VSILPAYSH---VGAL 464 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~--~~ll~a~~~---~~~~ 464 (820)
+.|..+.|+..-+..... -.-.|.+.+...+..|+++.|+++.+.-+...-+.+|..-- ..++.+-+. ..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 456666666555443322 23456778888888888888888888766644455554321 122222111 1234
Q ss_pred hHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHH-
Q 003439 465 RQGIKIHARVIKNCLCFDVFVA-TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD- 542 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 542 (820)
..|+..-.+..| +.||..-. -.-...|.+.|++.++-.+++.+-+....+--..+-.+.+.|+. ++.-+++...
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc--HHHHHHHHHHH
Confidence 445544444444 23332211 12235677778888888777777654444433333334444443 3333333322
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC
Q 003439 543 EGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR-AGHLGMAHNFIQNM 611 (820)
Q Consensus 543 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m 611 (820)
..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+-+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 1256665 466666777777777777776554444 456777777777666543 37777777776655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.095 Score=52.95 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLG 625 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 625 (820)
|..........|++++|...|+.+.+.+.-.+ ....+-.+..+|...|++++|...|+.+ ...|+ ...|-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445677777777777665432211 0234556667777777777777777666 11222 335555666
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+...|+.+.|...++++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777888999999999999888886553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.5 Score=42.88 Aligned_cols=169 Identities=10% Similarity=0.027 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCccc--------cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPR--SSSVP--------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL 555 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 555 (820)
+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.++++.++..-+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 46666666655555555555554332 12222 355666666778888888899999886544466677778
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFG----IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPV-RP-DASIWGALLGACRI 629 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~ 629 (820)
.+.-.+.|+++.|..+|+...+..+ ++-+..+...+...|.-+.++.+|...+.+.+. .| |++.-|.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997765422 222222333333455566788888888877742 22 23333332222334
Q ss_pred cCChhHHHHHHHHHhccCCCCcchH
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
.|+...|++..+.+.+..|.....-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 5778888888888888888654433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0053 Score=49.25 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEV----DSE---NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777777777777777777777653 121 234566788888888888888888877653
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.9 Score=42.14 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP-----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLT 557 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 557 (820)
..........+...+.+..+...+.... ......+..+...+...++..++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555566666666666666665543 22233355555556666667777777777766332221 12222222
Q ss_pred -HHHhcCCHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 003439 558 -ACSHSGLVSEGQRYFHMMQEEFGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD--ASIWGALLGACRI 629 (820)
Q Consensus 558 -a~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~ 629 (820)
++...|+++++...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777777777777777642 222 2233334444466677788888777766 33333 4567777777777
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.++.+.|...+..+....|.....+..++..+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888888888888887765555666666666666677777777666544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.025 Score=58.01 Aligned_cols=128 Identities=10% Similarity=0.100 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHM---MQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-------P-VRPDAS 618 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-------~-~~p~~~ 618 (820)
.|..|.+.|.-.|++++|+..++. +.+++|-+. ....+..+.+.+.-.|+++.|.+.++.. + ..-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666677889999887764 233444433 2356777888888889999998888754 1 112344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEV----D--SENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+.-+|.+.|....+++.|+.++.+-+.+ + .....++..|+++|...|.-++|..+.++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6678888888888999999988875542 2 2345577889999999999999887766554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=4.2 Score=46.12 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=50.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 215 MISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 215 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
-|..+.+.+.+++|+++-+.-.. ..|.. .-..++..+|+.+.-.|+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~--------------------------------~i~kv~~~yI~HLl~~~~ 407 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERF--------------------------------VIKKVGKTYIDHLLFEGK 407 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--Ccccc--------------------------------chHHHHHHHHHHHHhcch
Confidence 46677888888888887654322 11110 022345666777777777
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhCCChhh
Q 003439 295 MRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 328 (820)
Q Consensus 295 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 328 (820)
+++|-...-.|...+..-|---+..+...++...
T Consensus 408 y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 408 YDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 7777777777777777777766666666665443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.57 Score=50.15 Aligned_cols=157 Identities=9% Similarity=0.100 Sum_probs=104.5
Q ss_pred ccc--chHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCChh-HHHHHHHHHHh---------cCCHHHHHHHHHHhH
Q 003439 515 VPW--NAIISCHGIH-----GQGDKALNFFRQMLD-EGVRPDHI-TFVSLLTACSH---------SGLVSEGQRYFHMMQ 576 (820)
Q Consensus 515 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 576 (820)
..| ..++.|.... ...+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5566655442 234688889999982 22677754 44444333221 223455666655555
Q ss_pred HhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 577 EEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 577 ~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
.+.| |......+..+++-.|+++.|...|++. ...||.. +|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 5566667777778888899999999987 5677754 78778888888999999999999999999987665
Q ss_pred HHh--HHHHhhhcCCcchHHHHHH
Q 003439 654 YVL--MSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 654 ~~~--l~~~y~~~g~~~~A~~~~~ 675 (820)
-+. ..++|...+ +++|.+++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 554 344566654 566666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=47.50 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIK--PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~--p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 636 (820)
....|+.+.+.+.+..+..-+.-. |+... ...+....+.++++ -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345667777777777666443211 11111 11222233333332 123556677788899999999
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.49 E-value=5.8 Score=44.79 Aligned_cols=111 Identities=11% Similarity=0.112 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGAC 627 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~ 627 (820)
...|.+--+.-+...|+-.+|.++-...+ -||...|---+.+++..+++++-+++-+++. .++-|.-...+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 33455666667778888888888765443 4677777777888888999988888877763 245566678889
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHH
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
.+.|+.++|.+++-+.-.+. -...+|.+.|++.+|.+.-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 99999999988877553322 4667888888888887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.7 Score=43.53 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=32.7
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccH----hhHHHHhhccCChhHHHHHHHHHHHh
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTY----VSILPAYSHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~ 477 (820)
....+.+.|++++|++.|+++.. ..|+.... ..+..++.+.++++.|...++..++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34445566777777777777765 44443221 23334555666666666666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.022 Score=45.60 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-------P-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444444444444444444433 1 1122 336666777777777777777777776653
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.43 Score=52.61 Aligned_cols=252 Identities=12% Similarity=0.040 Sum_probs=126.8
Q ss_pred CHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH-------HHhhccCChhHHH
Q 003439 396 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL-------PAYSHVGALRQGI 468 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll-------~a~~~~~~~~~a~ 468 (820)
.+++|.+..++- |....|..+...-.+.-.++-|...|-+...-.|++.-.. +..+. ..-+--|.+++|+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhh
Confidence 355666655543 4456787777766666666777766655544233321100 00000 0111235666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----ccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS-----SVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
+++-.+-+.. .-|.++.+.|++-...++++.-...+ ...|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6665554432 24566667777776666665433111 223666666666666666666555432210
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 003439 544 GVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGAL 623 (820)
Q Consensus 544 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 623 (820)
...+.++.+..++++-..+-. .++-+....-.|.+++.+.|.-++|.+.+-+-..+ . +-
T Consensus 826 ---------e~~~ecly~le~f~~LE~la~------~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-k-----aA 884 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLAR------TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-K-----AA 884 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHHH------hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-H-----HH
Confidence 123334444444444333322 23334455566777777777777777776655422 1 23
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCC-----------CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSE-----------NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..|...+++.+|.++.++..--+-. ......--+..+.++|+.-+|.++..+|.++
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 34455555555555554432100000 0000112234577777777777777777654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.3 Score=43.10 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
....+.+.|++.+|++.|+++... -|+. .....++.++.+.|++++|...++...+.+.-.|... +...+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHH
Confidence 344556777788888888887774 2321 2455566677777888888887777776655544431 11111111
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-----------------HHhHH
Q 003439 596 GRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY-----------------YVLMS 658 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~ 658 (820)
+.-... ...+ .. ....+....|...++.++..-|++.-. -..++
T Consensus 88 ~~~~~~---~~~~---~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQI---PGIL---RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHH---HHHH----T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC---ccch---hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 0000 00 112223455666666666666654332 22568
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 003439 659 NIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|.+.|.+..|..-++.+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8899999999999999988765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.20 E-value=5.2 Score=42.51 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 605 HNFIQNMPVRP----DASIWGALLGA--CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 605 ~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
..++++.++.| +...-|.|..| +..+|++.++.-...=+.++.| ++.+|.+++-......+++||..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455555554 33455666665 5688999999988888889999 8999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.1 Score=45.90 Aligned_cols=95 Identities=9% Similarity=0.151 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 562 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 562 (820)
..++.++|.++++.|+++....+++..=.-|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 456677777888888888877777654322211 1011111 111234678888888888888888
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
|++..|.++.+...+.|+++-+...|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888998888888888887766666766654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=1 Score=46.98 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=98.0
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCccc-cchHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH---HH--------
Q 003439 492 MYGKCGRIDDAMSLFYQVPRSSSVP-WNAIIS--CHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL---LT-------- 557 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~~~~~~~-~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~-------- 557 (820)
.+.-.|+.++|.++=-.+.+-|... +...+. ++-..++.+.|...|++.+. +.|+...-... ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhh
Confidence 3444556666655544444333322 112222 23345677888888888777 55765432221 22
Q ss_pred --HHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH-HHHHHHH--HH
Q 003439 558 --ACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDAS-IWGALLG--AC 627 (820)
Q Consensus 558 --a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~-~~~~ll~--~~ 627 (820)
-..+.|.+..|.+.+.+.. ++.|+ ...|.....+..+.|++++|+.--+..- +-|.. ++--+.. ++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHH
Confidence 2346889999999998776 56664 4556666777788999999998876652 33433 3333333 34
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
...+++++|.+-++++.+.+.+ ......|.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 5668899999999999987764 44444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.9 Score=39.89 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=132.0
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---cccchHHH-H
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKN-CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSS---VPWNAIIS-C 523 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~-~ 523 (820)
..+......+...+.+..+...+...... ........+..+...+...+..+.+.+.+......+. ..+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444445555555566555555554432 2233445555666666677777777777776663222 22333333 6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRP----DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA 598 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 598 (820)
+...|+.++|...+.+... ..| ....+......+...++.+++...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7888999999999999865 344 2234444455577888999999999888743 222 357788888889999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 599 GHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
|.+++|...+... ...|+ ...+..+...+...++.+.+...+++.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998877 44454 445666666666777899999999999999886
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.69 Score=47.91 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=36.6
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHH----cCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLD----EGVR-PDHITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
+..+..++.-.|+++.|.+.|+.-.. .|-+ ....+..+|.++|.-...++.|+.++.+-
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777765433 2211 12235556777777777788888877643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.38 Score=43.97 Aligned_cols=69 Identities=23% Similarity=0.363 Sum_probs=46.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhH----HhhCCCCChhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQ----EEFGIKPHLKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~g~~p~~~~ 587 (820)
...++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344566677788888888888888884 45 56688888888888888888888887764 34577777654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.72 Score=46.32 Aligned_cols=105 Identities=13% Similarity=0.041 Sum_probs=75.6
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCCCHH-H
Q 003439 546 RP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG---HLGMAHNFIQNM-PVRPDAS-I 619 (820)
Q Consensus 546 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~m-~~~p~~~-~ 619 (820)
.| |...|..|..+|...|+.+.|...|....+-- .+++..+..+..++..+. .-.++.++|+++ ...|+.+ +
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45 45688888888888888888888888776432 234556666666554432 445788888887 5566555 5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
..-|..++...|++.+|...++.+++..|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 556667788999999999999999998876544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.24 Score=50.30 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=87.4
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHH-cCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC--CC--ChhHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLD-EGVRPDH---ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI--KP--HLKHY 588 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~--~p--~~~~~ 588 (820)
|-.+..++.+.-++.+++.+-+.-.. .|..|.. ....++..|....+.++++++.|+...+--.- .| ...+|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 34444455444455555554433332 2333311 12233455566666777777777765532111 11 23567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCcchH
Q 003439 589 GCMVDLFGRAGHLGMAHNFIQNM-------PVRP-----DASIWGALLGACRIHGNMELGAVASDRLFEV--DSENVGYY 654 (820)
Q Consensus 589 ~~li~~~~~~g~~~eA~~~~~~m-------~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~ 654 (820)
..|...|++..++++|.-+..+. .+.. ...+.-.|.-+++..|.+..|.+..+++.++ ...|-..+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 77778888877777766554443 2221 1112233445677788887788777776553 23333333
Q ss_pred ----HhHHHHhhhcCCcchHHHHHHH
Q 003439 655 ----VLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 655 ----~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
..++++|...|+.|.|..-++.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 3678888888888777665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.29 Score=43.07 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhH--------------HhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQ--------------EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-- 611 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-- 611 (820)
|..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|.++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45566777777777777777777665432 01123345555556666666666666666555443
Q ss_pred --CCCCCHHHHHHHHHHHH
Q 003439 612 --PVRPDASIWGALLGACR 628 (820)
Q Consensus 612 --~~~p~~~~~~~ll~~~~ 628 (820)
+++-+..+|..|+.-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 33334555555554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.16 Score=54.15 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=46.7
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh----HHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 546 RPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK----HYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 546 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
.|+ ...++.+..+|.+.|++++|...|+... .+.|+.. .|..+..+|...|++++|++.+++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444 3477778888888888888888888766 3566643 4777888888888888888888775
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.1 Score=38.95 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=75.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 605 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 605 (820)
..|..++..++..+..... +..-++-++--....-+-+-..+.++.+-.-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3566677777777666531 22222222222222223333444444433222222 244444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCC
Q 003439 606 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683 (820)
Q Consensus 606 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 683 (820)
.-+-.+. .+....+.-+......|.-+.-.+++..+..-+..++...+-++++|.+.|+..++.++++++-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444432 233344556777888899898889999888655558899999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.49 Score=50.63 Aligned_cols=117 Identities=9% Similarity=0.050 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHH---------HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 564 LVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFG---------RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~---------~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
..+.|..+|.+......+.|+- ..|..+...+. ......+|.++.++. ...| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888877544677763 34444433322 123455677777665 3444 6667777777788888
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.+.|...|+++..++|+.+..+...+++..-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.077 Score=34.27 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888889999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.96 E-value=4.9 Score=39.66 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR 597 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 597 (820)
..-.+.|++++|.+.|+.+... .|. ..+...++-++-+.+++++|+...++..+.++-.||.. |...+.++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs- 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS- 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH-
Confidence 3344556666666666666653 221 22444455555666666666666666665555555542 222222222
Q ss_pred cCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-----------------hHHhHHH
Q 003439 598 AGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG-----------------YYVLMSN 659 (820)
Q Consensus 598 ~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~ 659 (820)
.|.... ...|. .-...|...++.++..-|++.- .-..+++
T Consensus 118 ---------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 118 ---------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred ---------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 00011 1123344445555555554321 2236788
Q ss_pred HhhhcCCcchHHHHHHHHHhC
Q 003439 660 IYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 660 ~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|.+.|.|.-|..-++.|.+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999998876
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.38 Score=50.12 Aligned_cols=95 Identities=7% Similarity=0.028 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+.-.|.+.+++.+|++.-++. ...| |.-..-.=..+|...|+++.|+..|+++++++|+|-.+..-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667777888999999998887765 4444 444666667889999999999999999999999998888888877776
Q ss_pred cCCcchH-HHHHHHHHhC
Q 003439 664 VGKWEGV-DEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A-~~~~~~m~~~ 680 (820)
..+..+. .++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666654 6788888754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.82 E-value=4.4 Score=39.39 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=31.9
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCc----ccHhhHHHHhhccCChhHHHHHHHHHHHh
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQ----GTYVSILPAYSHVGALRQGIKIHARVIKN 477 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 477 (820)
....+.+.|++++|++.|+.+.. .-|+. .....+..++.+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~---~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLID---RYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---H-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455667777777777777766 22322 12234455566666666666666666554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.12 Score=33.22 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357778888888899999999999999888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.28 Score=48.10 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=82.8
Q ss_pred HHHHHhhCC--CCCccccchHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------
Q 003439 502 AMSLFYQVP--RSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGL---------- 564 (820)
Q Consensus 502 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 564 (820)
.++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 67777788888877654 5677777788999999999999999999998765332
Q ss_pred ------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH-HHHHHHHhC
Q 003439 565 ------VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG-MAHNFIQNM 611 (820)
Q Consensus 565 ------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~-eA~~~~~~m 611 (820)
-+-++.++++|. .+|+.||-++-..|+.+++|.|..- +...+.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 244889999998 5699999999999999999998543 333443333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.34 Score=47.98 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=52.9
Q ss_pred HcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhhhcCC
Q 003439 597 RAGHLGMAHNFIQNM-------PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYANVGK 666 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~ 666 (820)
+.|++.+|.+.|... ...||..-| |...+...|+++.|...|..+..-.|++ +..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555443 133455555 6677777777777777777776655443 4556677777788888
Q ss_pred cchHHHHHHHHHhC
Q 003439 667 WEGVDEVRSLARDR 680 (820)
Q Consensus 667 ~~~A~~~~~~m~~~ 680 (820)
-++|...+++..++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.38 Score=52.54 Aligned_cols=131 Identities=17% Similarity=0.249 Sum_probs=86.4
Q ss_pred HhcCChHHHHHHHHH-HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHH
Q 003439 525 GIHGQGDKALNFFRQ-MLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM 603 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~e 603 (820)
..+|+++++.+..+. -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 456777776665541 1111122 33466777778888999999887543322 2466778999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 604 AHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 604 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
|.++.++.. +...|..|......+|+++.|++++++. .-+..|.-+|...|+.+.-.++-+....+|
T Consensus 337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999887654 7789999999999999999999999965 346667788999999877777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.6 Score=38.03 Aligned_cols=125 Identities=14% Similarity=0.236 Sum_probs=64.6
Q ss_pred hhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChH
Q 003439 452 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 531 (820)
Q Consensus 452 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 531 (820)
..++..+.+.+.......+++.+.+.+. .+....+.++.+|++.+. .
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~--------------------------------~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP--------------------------------Q 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH--------------------------------H
Confidence 3455555555666666666666665542 455566666666655321 2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHh
Q 003439 532 KALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA-GHLGMAHNFIQN 610 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~ 610 (820)
+.++.++. .++......++..|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 22222221 12334444456666666666666666554321 11223333333 666777777665
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 003439 611 MPVRPDASIWGALLGACR 628 (820)
Q Consensus 611 m~~~p~~~~~~~ll~~~~ 628 (820)
- .+...|..++..+.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 3 24556666665554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.21 E-value=3 Score=45.73 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=93.6
Q ss_pred ccCCHHHHHHHHh--ccC-CCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 291 KFGMMRHALRVFD--QMM-ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 291 ~~g~~~~A~~~f~--~m~-~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
-.++++++.+... ++. .-+..-.+.+++-+-+.|.++.|+.+-..-.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------------------------ 322 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------------------------ 322 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------------------------
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------------------------
Confidence 4567777444332 111 1123347777888888888888887654432
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN 447 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd 447 (820)
.-.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|++...
T Consensus 323 ------------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------- 375 (443)
T PF04053_consen 323 ------------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------- 375 (443)
T ss_dssp ------------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------
T ss_pred ------------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------
Confidence 22345567889999988887765 566899999999999999999999988765
Q ss_pred cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 003439 448 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFY 507 (820)
Q Consensus 448 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 507 (820)
|..++-.|.-.|+.+.-.++-......|- +|.....+.-.|++++..+++.
T Consensus 376 ---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 376 ---FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 55666677777887777777766666552 3344444555677777766663
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.14 E-value=6.1 Score=39.77 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=82.3
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA---LLGACRIHGNME 634 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 634 (820)
.....|+..+|...|...... ..-+...--.|...|...|+.++|..++..+|.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456678888888888877743 222345666788888889999999999988875543333333 223333333333
Q ss_pred HHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 635 LGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+... +++-+..+|+|...-..|+..|...|+.++|.+.+-.+..+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3332 34455678999999999999999999999998776666544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.11 E-value=6.2 Score=42.63 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRP-D-HITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
+..+.-+.|+.++|++.|++|.+.. ++ | ......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444455566666666666665531 12 1 124445566666666666666655543
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.67 Score=45.61 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=74.0
Q ss_pred hHHHHHhccCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCC---------
Q 003439 195 NVARKLFDDMP--VRDSGSWNAMISGYCQS-----GNAVEALDILDEMRLEGVSMDPITVASILPVCARSD--------- 258 (820)
Q Consensus 195 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--------- 258 (820)
...++.|...+ ++|-.+|-+++..+... +.++=-...++.|.+-|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777777 78888898888887654 556666677888999999999999999998875532
Q ss_pred -------ChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 259 -------NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 259 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
+-+-+..++++|...|+.||-.+-..|++.+.+.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223466777777777777777777777777766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.3 Score=39.60 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 596 GRAGHLGMAHNFIQNM----PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+.|++++|.+.|+.+ |..| ...+-..|+.+|.+.|++++|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3456666666666555 2222 2234455777777777777777777777777776654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.41 Score=44.62 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=67.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVRP------DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
-+.+.|++++|..-|..+ ..-| ..+.|..-..+..+.+..+.|+.-..+++++.|....+...-+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666554 1111 234555555667788999999999999999999888888888999999999
Q ss_pred cchHHHHHHHHHhC
Q 003439 667 WEGVDEVRSLARDR 680 (820)
Q Consensus 667 ~~~A~~~~~~m~~~ 680 (820)
+++|.+-++++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.6 Score=37.67 Aligned_cols=19 Identities=5% Similarity=-0.078 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhccCCCCc
Q 003439 633 MELGAVASDRLFEVDSENV 651 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~~~ 651 (820)
...|...|++++..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777778888778643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.57 E-value=12 Score=44.85 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=87.2
Q ss_pred CCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH----HHhcCCHHHHHHHH
Q 003439 497 GRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA----CSHSGLVSEGQRYF 572 (820)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a----~~~~g~~~~a~~~~ 572 (820)
|++++|+.-+.++. ..-|.-.+.--.++|.+.+|+.++ +|+...+..+..+ |...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56677766665554 334555555556777777777764 5666555444443 44566666666666
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 573 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI--WGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 573 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
+..-+ + .--+.+|..+|++.+|+.+-.++....|... -..|.+-+...++.-+|-++.++... |
T Consensus 963 e~~Gk---l-------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d 1028 (1265)
T KOG1920|consen 963 ERCGK---L-------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----D 1028 (1265)
T ss_pred HHhcc---H-------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----C
Confidence 54321 0 1124566677777777777777754444442 24566667777766666665554432 1
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+. --...|.++..|++|.++-...
T Consensus 1029 ~~---~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 PE---EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HH---HHHHHHhhHhHHHHHHHHHHhc
Confidence 11 1223456666777776655443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.40 E-value=25 Score=40.55 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCcchHHhHHHHhhhcCCc
Q 003439 592 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFE-VDSENVGYYVLMSNIYANVGKW 667 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~ 667 (820)
+..+....+.+++..+.+..+.+ ++..|-.++.-+...+..+.-.+...++++ +..++--.-..+.+++++.+..
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~l 787 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTL 787 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCce
Confidence 34455566777777777776533 777888888888887766655555554443 2222222234455666666543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=27 Score=40.60 Aligned_cols=267 Identities=9% Similarity=0.013 Sum_probs=117.5
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHH
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPA 457 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 457 (820)
+....+-..-+..+.+.+++....+.+.. +..+...-.....+....|+.++|....+.+-. .|. ........++..
T Consensus 96 P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g~-~~p~~cd~l~~~ 172 (644)
T PRK11619 96 PPARSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TGK-SLPNACDKLFSV 172 (644)
T ss_pred chHHHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCC-CCChHHHHHHHH
Confidence 33334444455556667777777763322 233444445556677777887777766666654 221 122334455555
Q ss_pred hhccCChhHHHHH--HHHHHHhCC-----------CCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHH
Q 003439 458 YSHVGALRQGIKI--HARVIKNCL-----------CFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISC 523 (820)
Q Consensus 458 ~~~~~~~~~a~~i--~~~~~~~g~-----------~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 523 (820)
+.+.|.+...... +..+...|- .++ ......++..+.+ ...+...+.... ++...-...+.+
T Consensus 173 ~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~ 248 (644)
T PRK11619 173 WQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVA 248 (644)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHH
Confidence 5544433322110 111111110 011 1112222222221 222222222111 111111111122
Q ss_pred HH--hcCChHHHHHHHHHHHHcC-CCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc
Q 003439 524 HG--IHGQGDKALNFFRQMLDEG-VRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598 (820)
Q Consensus 524 ~~--~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 598 (820)
+. ...+.+.|..++.+..... +.+... ....+.......+...++...++..... ..+......-+..-.+.
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHc
Confidence 22 2345677777777664432 222221 2333332223332245566655543311 12333344444444477
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 599 GHLGMAHNFIQNMPV--RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 599 g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
++++.+...|..|+. .-...-.-=+..+....|+.++|...|+++.. + .++|-.|+
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 788877777777731 11111112244555567888888888887633 2 23555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.30 E-value=6.8 Score=39.43 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=102.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 601 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 601 (820)
.....|+..+|..+|+...+. .| +...-..+..++...|+++.|..++..+-.+ --.........-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 445778899999999988884 44 3456667888999999999999999776432 1111111223445667777766
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCcchHHhHHHHhhhcCCcchH-HHHHHHH
Q 003439 602 GMAHNFIQNMPVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVD--SENVGYYVLMSNIYANVGKWEGV-DEVRSLA 677 (820)
Q Consensus 602 ~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~A-~~~~~~m 677 (820)
.+..++-.+....| |...--.|...+...|+.+.|.+.+-.++..+ -+|...--.|..++.-.|.-+.+ ..++++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66666666665566 45566677788888999998888777776643 34566666777777777755543 3444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.95 E-value=3.8 Score=44.21 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=66.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH---
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG--- 602 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--- 602 (820)
+..++.+-+++-++.++ +.||..+-..++ +-.....+.++.+++++..+. | .. .|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EA-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HH-------hhchhhhhhccc
Confidence 34455666666666666 567665433332 223344567777777665532 0 00 000000000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 603 MAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 603 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+.+..-..+|-..+-..|...+++.|+.++|++.++.+++..|. +......|++.+...+++.|+..++.+-.+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 00011111111222233344555556666666666666666655443 233445566666666666666666655443
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.89 E-value=8.3 Score=34.71 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=82.5
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
+...-..++..+.+.+.+.....+++.+...+ ..+....+.++..|++.+ ..+..+++.. ..+.......+
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445567777877888899999999988876 356667888888887653 3445555442 12233344567
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 593 DLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH-GNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
..+.+.+.++++.-++.+++... ..+..+..+ ++.+.|++.+++ +.++..|..++..+
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 77778888888888888875322 222333334 788888887775 23455565555444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.73 E-value=21 Score=38.10 Aligned_cols=136 Identities=11% Similarity=0.110 Sum_probs=97.5
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-HHH
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHY-GCM 591 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-~~l 591 (820)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.=... -||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3447777777777777888888888888888 5567777877777554 56778888888764433 2444333 345
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 592 VDLFGRAGHLGMAHNFIQNM--PVRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
++-+.+-++-+.|..+|+.. .+..+ ..+|..+|.--..-|++..+..+-+++.++-|+....
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHH
Confidence 66677888888888888855 22333 4588888888888899988888888888888865443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=3.8 Score=41.58 Aligned_cols=152 Identities=9% Similarity=0.057 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH----HHHHHhcCCHHHH
Q 003439 496 CGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSL----LTACSHSGLVSEG 568 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a 568 (820)
.|+..+|-..++++. +.|..+|+--=.+|..+|+.+.-...+++.... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455666655565555 556677777777777777777777777776653 34555443332 2234566777777
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 003439 569 QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-------ASIWGALLGACRIHGNMELGAVAS 640 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~ 640 (820)
.+.-++.. .+.| |.-.-.++...+--.|+..|+.+++.+-.-.-+ ..-|..- --+...+.++.|+.+|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHHH
Confidence 77655443 2333 223344555666667777777777766531100 1111111 1123346677777777
Q ss_pred HHHh--ccCCCCcc
Q 003439 641 DRLF--EVDSENVG 652 (820)
Q Consensus 641 ~~~~--~~~p~~~~ 652 (820)
++-+ +++.+|..
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 6432 34555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.64 E-value=4.1 Score=45.32 Aligned_cols=116 Identities=14% Similarity=0.063 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHH-HHHHHHcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChh
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCM-VDLFGRAGHLGMAHNFIQNMPV------RPDASIWGALLGACRIHGNME 634 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-i~~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~ 634 (820)
....+.+.++++.+.++ -|+...|... ...+...|++++|.+.|++.-. +-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566777777777654 3555444333 3445567777777777775420 112233444556677788899
Q ss_pred HHHHHHHHHhccCCCCcchHH-hHHHHhhhcCCc-------chHHHHHHHHHhC
Q 003439 635 LGAVASDRLFEVDSENVGYYV-LMSNIYANVGKW-------EGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~~~~~~~-~l~~~y~~~g~~-------~~A~~~~~~m~~~ 680 (820)
+|...+.++.+...-+...|. ..+-+|...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999888886655444444 456667778888 7777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.59 E-value=8.7 Score=37.45 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
.|.--..+|-...++++|...+.+..+ +..-|..-|. . ....+.|..+.+++.+. .--+..++.-..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 344555666667777777766655543 1111111110 0 11223333333333332 11233456666677
Q ss_pred HhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHH
Q 003439 494 GKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 542 (820)
..+|..+.|-..+++..+ ...+-++++|+++|++...
T Consensus 102 ~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHH
Confidence 777777766655544321 1234456666666666544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=19 Score=36.92 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCChHHHHhH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNA----VEALDILDEMRLEGVSMDPITVASI 250 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~l 250 (820)
.+|..+.-..+..+...|..+....+..-...+|...-...+.++.+-|+. ++++.++..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555555555433333333323344555555556666666653 3566666655322 2344444444
Q ss_pred HHhhhcC
Q 003439 251 LPVCARS 257 (820)
Q Consensus 251 l~a~~~~ 257 (820)
+.+++..
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.5 Score=44.27 Aligned_cols=159 Identities=13% Similarity=0.026 Sum_probs=114.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH----HHHHHcCCH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV----DLFGRAGHL 601 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li----~~~~~~g~~ 601 (820)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++..+ ..|+...|..+= -.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 5567778888888999999999999988887743 355654454443 344578999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 602 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
++|++.-++. +++| |.-.-.++...+..+|+..++.+..++-...-.+ -.-.|-+.+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 3445566777788899999999987765432211 12234456667788899999999998
Q ss_pred HHHhCCCCcCCc
Q 003439 676 LARDRGLKKTPG 687 (820)
Q Consensus 676 ~m~~~~~~~~~~ 687 (820)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765554555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.92 E-value=18 Score=35.85 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=98.4
Q ss_pred HhcCCHHHHHHHHhhCCCCCccc------cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh----
Q 003439 494 GKCGRIDDAMSLFYQVPRSSSVP------WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSH---- 561 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~---- 561 (820)
.+.|++++|.+.|+.+....+.+ --.++-++-+.+++++|+..+++.+.. -|++ .-|...|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhccC
Confidence 45688888888888887332221 223455677889999999999998884 3432 344444444442
Q ss_pred ---cCCHH---HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCh
Q 003439 562 ---SGLVS---EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASI--WGALLGACRIHGNM 633 (820)
Q Consensus 562 ---~g~~~---~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~ 633 (820)
..+.. +|..-|+....++ ||.. -..+|..-+.... |... =.++..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 12233 3334444444332 3321 1111221111110 1110 02345668899999
Q ss_pred hHHHHHHHHHhccCCCCcc---hHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 634 ELGAVASDRLFEVDSENVG---YYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|..-++++++--|+-.. .+..|..+|.+.|..++|.+..+-+...
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999887665433 4556788899999999999887776543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.89 E-value=21 Score=36.64 Aligned_cols=19 Identities=5% Similarity=-0.179 Sum_probs=13.1
Q ss_pred HHHhcCChhHHHHHHHHHh
Q 003439 626 ACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~ 644 (820)
.+.+.+++++|...|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556778888888777543
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.84 E-value=9.4 Score=40.44 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=51.8
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCC---Cccc----HHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChHHHHhHHH
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPVR---DSGS----WNAMISGYCQ---SGNAVEALDILDEMRLEGVSMDPITVASILP 252 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 252 (820)
.|+-.|-...+++...++.+.++.. +... --...-++-+ .|+.++|++++..+......+++.||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888999999999998753 2111 1123345556 8999999999999777777888888887776
Q ss_pred hh
Q 003439 253 VC 254 (820)
Q Consensus 253 a~ 254 (820)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.5 Score=41.97 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=53.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCC
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGH 600 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~ 600 (820)
+.|++.+|...|...++.. |+. ..+.-|..++...|++++|..+|..+.+.++-.|.. +.+--|.....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4456777777777776642 322 134446677777777777777777777666555543 556666666666666
Q ss_pred HHHHHHHHHhC
Q 003439 601 LGMAHNFIQNM 611 (820)
Q Consensus 601 ~~eA~~~~~~m 611 (820)
.++|...+++.
T Consensus 231 ~d~A~atl~qv 241 (262)
T COG1729 231 TDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.44 Score=30.60 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.86 E-value=37 Score=37.81 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=118.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRS---SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
+..+|..-++--.+.|+.+...-+|++..-+ =..-|--.+.-....|+.+-|-.++....+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556677777777788888888888776522 1122444444444458888777777766664222222332222334
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAH---NFIQNM-PVRPDASIWGALLG-----ACR 628 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 628 (820)
+...|+++.|..+++.+.+++ |+. ..-.--+.+..|.|..+.+. +++... +..-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 567889999999999998763 653 33334466778889998888 555544 22223223333222 244
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
..++.+.|..++.++.+..|++...|..+.++....+-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56889999999999999999999999988887766653
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.73 E-value=6 Score=44.48 Aligned_cols=183 Identities=19% Similarity=0.290 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc----------ccHhhHHHHhhccCChhHHHHHHHHHHH-hC-CCC
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ----------GTYVSILPAYSHVGALRQGIKIHARVIK-NC-LCF 481 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----------~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g-~~~ 481 (820)
+-..++..|....+++..+++.+.++. + ||. +.|.-.++--.+-|+-++|..+.--+++ .| +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---I-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---C-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 345566677777888888888888766 2 321 2344445444556777788777655544 33 233
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---HHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI---TFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a 558 (820)
++||-||++- +.|- +-+.|...+..+.|.+.|++.-+ +.|+.. .+..|+.+
T Consensus 279 ---------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 4577777653 2222 22345566777889999999988 788764 34444443
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 638 (820)
-.+ .++...++ . ..| -.|-.+++|.|.++.-.++++-. ..+.+-.-.+|+..|++
T Consensus 333 aG~--~Fens~El----q-~Ig--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL----Q-QIG--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH----H-HHH--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 12222222 1 112 23456789999999888887542 24555566789999999
Q ss_pred HHHHHhccCCCCc
Q 003439 639 ASDRLFEVDSENV 651 (820)
Q Consensus 639 ~~~~~~~~~p~~~ 651 (820)
+.+.++++.|..-
T Consensus 388 Aae~mfKLk~P~W 400 (1226)
T KOG4279|consen 388 AAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHhccCCcee
Confidence 9999999998643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.4 Score=40.25 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=40.1
Q ss_pred hcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003439 495 KCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 571 (820)
..|++++|..+|.-+. ..+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4556666665555433 2222334455555555555555555555554432 12233333444555555555555555
Q ss_pred HHHhH
Q 003439 572 FHMMQ 576 (820)
Q Consensus 572 ~~~m~ 576 (820)
|+...
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.96 E-value=10 Score=33.14 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
+......|.-++-.+++.++... -+|++.....+.+||.+.|+..++.+++.+.-++
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44455666666666666666542 2566666666677777777777777776666544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.55 Score=30.79 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
|+.|...|.+.|++++|+.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.92 E-value=36 Score=36.40 Aligned_cols=435 Identities=12% Similarity=0.092 Sum_probs=223.9
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDS---GSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASIL 251 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 251 (820)
+.|...|-.||.-|...|..++-++++++|..|-+ .+|..-|++=....++.....+|.+........|. |..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL--W~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL--WMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH--HHHHH
Confidence 56788999999999999999999999999987753 47999999888889999999999988766554443 33333
Q ss_pred HhhhcCCCh------HHHHHHHHHHHH-hCCCc-cHHHHHHHHHHHH---------ccCCHHHHHHHHhccCC-C-----
Q 003439 252 PVCARSDNI------LSGLLIHLYIVK-HGLEF-NLFVSNNLINMYA---------KFGMMRHALRVFDQMME-R----- 308 (820)
Q Consensus 252 ~a~~~~~~~------~~a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~f~~m~~-~----- 308 (820)
.--.+.+.. ....+.++..+. .+++| ....|+..+...- .+.++|..++.+.++.. |
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 332222211 122344555444 34444 3344555544332 12345566666766654 1
Q ss_pred ----CchHHHHHHHH-----HHhC--CChhhHHHHHHHHHH--cCCCCC----cchHHHHHH-----------HHHhcCc
Q 003439 309 ----DVVSWNSIIAA-----YEQS--NDPITAHGFFTTMQQ--AGIQPD----LLTLVSLTS-----------IVAQLND 360 (820)
Q Consensus 309 ----d~~~~~~li~~-----~~~~--g~~~~A~~~~~~m~~--~g~~pd----~~t~~~ll~-----------a~~~~~~ 360 (820)
|-..|..=+.- ++-. --+-.|...+++... .|+..- ..|++.+-+ -=. .+.
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~-en~ 275 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM-ENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh-cCC
Confidence 11122111111 1111 113456666666642 343322 222222111 000 000
Q ss_pred chhhh--------hHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHH-HHHHcCChHHH
Q 003439 361 CRNSR--------SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLIT-GYAQNGLASEA 431 (820)
Q Consensus 361 ~~~a~--------~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g~~~~A 431 (820)
+..+. -+|.+++.. +.....+|----..+...++-+.|......-.+-. .+.+..++ .|--..+.++.
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s-psL~~~lse~yel~nd~e~v 352 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS-PSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC-CchheeHHHHHhhcccHHHH
Confidence 00000 011111110 11111122111222223344444544443221111 11111111 12222232333
Q ss_pred HHHHHhhhhcCCCCCCcccHhhHHHHhh---ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 003439 432 IEVFQMMEECNEINPNQGTYVSILPAYS---HVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 508 (820)
Q Consensus 432 ~~l~~~m~~~~g~~pd~~t~~~ll~a~~---~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 508 (820)
...|+...+ . ...-.+.+.+=+ .-|+++.-.+++ .+. ...-..++..+++.-.+..-++.|+.+|-+
T Consensus 353 ~~~fdk~~q-~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 353 YGCFDKCTQ-D-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-INKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred hhhHHHHHH-H-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-HhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333332221 0 000000000000 012222111111 111 112345677788888888889999999987
Q ss_pred CC-----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 509 VP-----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF-VSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 509 ~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.. .+++..++++|.-+++ |++.-|..+|+--+. .-||...| .-.+.-+...++-+.|..+|+...++ +.
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~ 497 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LE 497 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HH
Confidence 76 4566678999887775 677888999986655 35666544 34566677889999999999966653 23
Q ss_pred CC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 003439 583 PH--LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIH 630 (820)
Q Consensus 583 p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~ 630 (820)
.+ ...|..||+-=..-|++..+..+=++| ..-|-..+-....+-|...
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 33 568999999889999998888777766 2334443333444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.91 E-value=10 Score=42.18 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=70.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHHcCCHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSL-LTACSHSGLVSEGQRYFHMMQEEFGIKPHL--KHYGCMVDLFGRAGHLGM 603 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~e 603 (820)
..+.+.|.++++++.+ .-|+...|... ...+...|++++|.+.|+.......--|.. ..+--+.-.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4566788888888888 46777666544 335677888888888888654211111222 122334455777889999
Q ss_pred HHHHHHhCC-C-CCCHHHHHHHHHHH-HhcCCh-------hHHHHHHHHHhc
Q 003439 604 AHNFIQNMP-V-RPDASIWGALLGAC-RIHGNM-------ELGAVASDRLFE 645 (820)
Q Consensus 604 A~~~~~~m~-~-~p~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 645 (820)
|.+.|..+. . +-+..+|.-+..+| ...|+. ++|..+++++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 988888873 1 22333444444443 345666 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.54 E-value=6.6 Score=40.55 Aligned_cols=62 Identities=13% Similarity=0.292 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhcCC--HHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 531 DKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGL--VSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
+++...|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+. |+++...+|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 56778888888888877543 33334443332222 55788888888866 99988888776543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.52 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.3
Q ss_pred hHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999855
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.34 E-value=19 Score=35.15 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=67.1
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHH--cCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLD--EGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
|+--...|.++|.++-|-..+++.-+ +++.|+.. .|..-+......++...|. +.|....
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~----------------el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF----------------ELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH----------------HHHHHhh
Confidence 34445667777777666555554432 12445432 2222222222222222222 2334444
Q ss_pred HHHHHcCCHHHHHHHHHhCC-------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCCcchHHhHHHH
Q 003439 593 DLFGRAGHLGMAHNFIQNMP-------VRPDAS-IWGALLGACRIHGNMELGAVASDRLFE----VDSENVGYYVLMSNI 660 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m~-------~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~ 660 (820)
..|.|..+++||-..|.+-. .-|+.. .+-+.|-.+.-..|+..|++.++.-.+ ..|++..+...|...
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 55666666666655554431 112221 233444444455566677777666444 234444455555544
Q ss_pred hhhcCCcchHHHHH
Q 003439 661 YANVGKWEGVDEVR 674 (820)
Q Consensus 661 y~~~g~~~~A~~~~ 674 (820)
| ..|+.|++..+.
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 4 445555555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=33 Score=35.19 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003439 481 FDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 560 (820)
Q Consensus 481 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 560 (820)
++..+-...+.++++.|+.+....+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 455666666777777777443333333333333 233566677777775 677777777763 456555544455443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.16 E-value=33 Score=41.36 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhc
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACSHS 562 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~ 562 (820)
+|.+..+-+...+.+++|.-.|+...+- .--+.+|...|++.+|+.+..+|.. .-|.. +-..|.+-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 3344444445566677776666554321 1234566666666666666655532 11222 124456666677
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
++.-+|-++..+... .|. --+..|+++-.+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 777777666654432 222 2355667777777777766554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.83 Score=31.55 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=26.4
Q ss_pred chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 652 GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 652 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+..++..|.+.|++++|.++++++.+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.80 E-value=18 Score=41.92 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=40.8
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh--
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC-LCFDVFVATCLVDMYGK-- 495 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~-- 495 (820)
...+.-.|+++.|++.+.+. .+...|.+.+...+..+.-..-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34456679999999988872 346667777776666554333222221 2221111 01112456777878875
Q ss_pred -cCCHHHHHHHHhhCC
Q 003439 496 -CGRIDDAMSLFYQVP 510 (820)
Q Consensus 496 -~g~~~~A~~~~~~~~ 510 (820)
..+..+|.++|--+.
T Consensus 339 ~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 339 EITDPREALQYLYLIC 354 (613)
T ss_dssp TTT-HHHHHHHHHGGG
T ss_pred hccCHHHHHHHHHHHH
Confidence 356777777775554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.53 E-value=11 Score=32.78 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=21.7
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 542 (820)
++..|+++.|++.|.+.. +.....||.-..++.-.|+.++|++-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444322 23333444444444444444444444444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.38 E-value=13 Score=35.63 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=82.9
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++--.|++.-|.+=|...-+.-.-.|-...|-.+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-- 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-- 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH--
Confidence 3466666666777777777777777766 34432 232222223445667776666444333221122222222111
Q ss_pred HHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHhHHHHhhhcC
Q 003439 594 LFGRAGHLGMAHNF-IQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-------VGYYVLMSNIYANVG 665 (820)
Q Consensus 594 ~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g 665 (820)
--+.-+..+|..- .++.. ..|..-|...|-.+.-- ++. .+.+++++.+-..++ .++|.-|+.-|...|
T Consensus 176 -~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 176 -NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred -HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1223355555533 33332 33545555555443321 111 122333333322222 346778999999999
Q ss_pred CcchHHHHHHHHHhCCC
Q 003439 666 KWEGVDEVRSLARDRGL 682 (820)
Q Consensus 666 ~~~~A~~~~~~m~~~~~ 682 (820)
..++|..+|+.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999999876543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.08 E-value=18 Score=33.13 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRIHGNM 633 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~ 633 (820)
++.-...++.+++..++..+. -+.|... +-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334456678888888888776 4566542 22233445678899999999998883 334445556777777766655
Q ss_pred hHHHHHHHHHhccCC
Q 003439 634 ELGAVASDRLFEVDS 648 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p 648 (820)
..=....+++++..|
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 566666777777666
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.01 E-value=2.5 Score=42.69 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLD-----EGVRPDHITFVS 554 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 554 (820)
..++..++..+..+|+.+.+...++++. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3466778888888888888888888776 44556688888888888888888888888765 466666655544
Q ss_pred HHHH
Q 003439 555 LLTA 558 (820)
Q Consensus 555 ll~a 558 (820)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.66 E-value=43 Score=34.79 Aligned_cols=92 Identities=9% Similarity=0.106 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc---ccHhhHHHHhhccCChhHHHHHHHHHHHhCC-----CCchhH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ---GTYVSILPAYSHVGALRQGIKIHARVIKNCL-----CFDVFV 485 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~~~~~~ 485 (820)
+|-.+..++-+-.++.+++.+-..-....|..|.. ....++-.+....+.++++.+.|+.+.+.-- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 34444455544445555555544433323333321 1222344556666667777776666554211 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 003439 486 ATCLVDMYGKCGRIDDAMSL 505 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~ 505 (820)
+.+|...|++..++++|.-+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhh
Confidence 66677777777666665433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.48 E-value=69 Score=36.94 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcC
Q 003439 79 VFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRN 158 (820)
Q Consensus 79 ~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~ 158 (820)
.-++-..|+.|.-.|++++|-...-.|-..+..-|--.+.-++..++......+ +....-..+...|-.+|-.+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~----lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY----LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc----CCCCCcccCchHHHHHHHHHHH
Confidence 345666777777777888887777777777777777777777766665544322 2222222344456666655544
Q ss_pred CcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 003439 159 LVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR 236 (820)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 236 (820)
.+-..++..+.+. +++.+.....+++- ..-|++-.+ +...-..|..-|...++++.|+.++-..+
T Consensus 468 -~~~~~F~e~i~~W--p~~Lys~l~iisa~---------~~q~~q~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 468 -SDVKGFLELIKEW--PGHLYSVLTIISAT---------EPQIKQNSE-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -HHHHHHHHHHHhC--ChhhhhhhHHHhhc---------chHHHhhcc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 2233333333222 22222222222111 111111111 11122337888888899999988887765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.21 E-value=0.28 Score=44.66 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=61.7
Q ss_pred HHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHH
Q 003439 351 LTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASE 430 (820)
Q Consensus 351 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (820)
++..+.+.+.......++..+.+.+ ...+..+.+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 3455556667777777777777666 567788889999999999888888888874333 444567777788888888
Q ss_pred HHHHHHhhhh
Q 003439 431 AIEVFQMMEE 440 (820)
Q Consensus 431 A~~l~~~m~~ 440 (820)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888887654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.56 E-value=28 Score=32.35 Aligned_cols=134 Identities=11% Similarity=0.106 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHccCCHHHHHHHHhccCC
Q 003439 229 LDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF-VSNNLINMYAKFGMMRHALRVFDQMME 307 (820)
Q Consensus 229 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~ 307 (820)
++.++.+.+.++.|+...+..+++.+.+.|.+..-.+ ++..++-+|.. +...|++.-. ....+.++=-.|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHH
Confidence 3555666677888888888888888888887654433 34445444433 3333333221 22233333333333
Q ss_pred CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHH
Q 003439 308 RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMR 373 (820)
Q Consensus 308 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 373 (820)
+=...+..++..+...|++-+|+.+.++... -+......++.+..+.++...--.++.....
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3233566777888889999999988877522 2223334556666665555544444444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.02 E-value=2.3 Score=43.16 Aligned_cols=95 Identities=8% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
-.+-|.++|.+++|+..|..-. .+.| |+..+..-..+|.+..++..|+.--+.. .+.. -.-.|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556788899999999887655 4566 7778888888888888888777655443 1111 1224555555555667
Q ss_pred ChhHHHHHHHHHhccCCCCcc
Q 003439 632 NMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+.++|.+-++.+++++|++..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888999999999999997544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.92 E-value=43 Score=35.54 Aligned_cols=147 Identities=7% Similarity=-0.054 Sum_probs=75.5
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hhH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP---DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKH 587 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~ 587 (820)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34457777788888888888888888777643222 2223333445556677777887777766642 11111 111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCcchHHhHHHH
Q 003439 588 YGCMVDLFGRAGHLGMAHNF-IQNMPVRPDASIWGALLGACRIH------GNMELGAVASDRLFEVDSENVGYYVLMSNI 660 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 660 (820)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+++...|+++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000011222333333333 778899999999999999888887777765
Q ss_pred hh
Q 003439 661 YA 662 (820)
Q Consensus 661 y~ 662 (820)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 53
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.14 E-value=3.3 Score=42.08 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=61.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG 599 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 599 (820)
..-|.+.|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..=-..... .| ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4679999999999999999888 678 999999999999999888877765444331 11 23456777665
Q ss_pred -------CHHHHHHHHHhC-CCCCCHH
Q 003439 600 -------HLGMAHNFIQNM-PVRPDAS 618 (820)
Q Consensus 600 -------~~~eA~~~~~~m-~~~p~~~ 618 (820)
.+.||.+-.+.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 455555444443 4677644
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.04 E-value=2.6 Score=38.40 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
++.+.++.++.-+.-+.|+.+..-..-++++...|+|.+|.++++.+
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.9 Score=41.33 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+..++..+...|+.+.+...++++++.+|-+...|..|..+|...|+...|...++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344455555555556666666666666666666666666666666666666665555543
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=83.44 E-value=68 Score=34.33 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHhhCC----CCCccccchHHHHH-HhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHhcCCHH
Q 003439 496 CGRIDDAMSLFYQVP----RSSSVPWNAIISCH-GIHGQGDKALNFFRQMLDEGVRPDHI----TFVSLLTACSHSGLVS 566 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 566 (820)
.|+.++|.+.|..+. .+.+..+-+|+.+- ....++.+|+++|++..- ..|... ....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 689999999998887 33445577777664 456789999999999887 567543 4444555678899999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHH-HHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGC-MVDLFGR---AGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDR 642 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~-li~~~~~---~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 642 (820)
++..+-....++|.-.|-...|.. ++..+.+ ....+.-.+++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 999888888877766665433322 2333333 334455556666664222345888888888999999999999999
Q ss_pred HhccCCCCcchHHhHHHHhhhcC-----CcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHH
Q 003439 643 LFEVDSENVGYYVLMSNIYANVG-----KWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDEL 717 (820)
Q Consensus 643 ~~~~~p~~~~~~~~l~~~y~~~g-----~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l 717 (820)
+..+.. ....-...+.+|...- +.+++.+....+... ..+|.-..+.+..
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~------------------------~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRD------------------------KLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh------------------------hCChhhHHHHHHH
Confidence 998874 3444444555554443 234444433332221 2355556666666
Q ss_pred HHHHHHHHhCC
Q 003439 718 RNLTAKMKSLG 728 (820)
Q Consensus 718 ~~l~~~m~~~g 728 (820)
..+-.++.+..
T Consensus 338 ~~va~~V~~~p 348 (421)
T PRK12798 338 RSVARQVRRAP 348 (421)
T ss_pred HHHHHHHhcCc
Confidence 66666666543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.83 E-value=3.1 Score=37.27 Aligned_cols=53 Identities=6% Similarity=-0.047 Sum_probs=36.7
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
..++.++++.+++.+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35666777777777777777777777777777777777777777777666543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.60 E-value=22 Score=33.58 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=45.1
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC--CCC----hhHHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGI--KPH----LKHYG 589 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~--~p~----~~~~~ 589 (820)
..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..+......- .++ ...|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334445555555555555555555544444432 3445555566666666666655554432111 011 12233
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m 611 (820)
.|. +...|++.+|-+.|-+.
T Consensus 120 gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHH--HHHhchHHHHHHHHHcc
Confidence 222 22356777777776555
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=82.52 E-value=62 Score=33.19 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=16.7
Q ss_pred HHHhhhcCCcchHHHHHHHHH
Q 003439 658 SNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~ 678 (820)
+.-..+.++|++|.+.++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 556778899999999988654
|
It is also involved in sporulation []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.13 E-value=45 Score=33.67 Aligned_cols=56 Identities=11% Similarity=-0.068 Sum_probs=50.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...|...|.+.+|.++.++++.++|-+...+-.|.++|+..|+--.|.+-++.+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 35688999999999999999999999999999999999999998888887777753
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.94 E-value=7 Score=39.42 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCc---cccch-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 003439 478 CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSS---VPWNA-IISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 552 (820)
Q Consensus 478 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~---~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 552 (820)
|......+...+++.-....+++++...+-++. .++. .-|.. .+.-.+..=++++++.++..=++-|+-||..|+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhH
Confidence 444555566667777677778888888877665 2221 11211 111223344678999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
..++..+.+.+++.+|.++.-.|..+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999888777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.89 E-value=44 Score=31.04 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 003439 266 IHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVF 302 (820)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 302 (820)
....+.+.++.++...+..+|+.+.+.|++..-..++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444455667777777777777776666655444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.65 E-value=1.3 Score=40.14 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=58.4
Q ss_pred hhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChH
Q 003439 452 VSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 531 (820)
Q Consensus 452 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 531 (820)
..++..+.+.+.++...++++.+.+.+...+..+.+.++.+|++.++.+...++++.... .....++..+.++|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 456777888888899989999998877677888999999999999877777777763222 33344555555555555
Q ss_pred HHHHHHHH
Q 003439 532 KALNFFRQ 539 (820)
Q Consensus 532 ~A~~l~~~ 539 (820)
+|.-++.+
T Consensus 88 ~a~~Ly~~ 95 (143)
T PF00637_consen 88 EAVYLYSK 95 (143)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.14 E-value=1.3e+02 Score=35.24 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHHHHHccCChHHHHHHhcccCCCCcchHHHH----HHHHHhCCCchHHHHHHHHHhhhCC-CCCCccccHHHHHhhcCC
Q 003439 85 LVNFYANLGDLSFSRHTFDHISYRNVYTWNSM----ISVYVRCGRLSEAVDCFYQFTLTSG-LRPDFYTFPPVLKACRNL 159 (820)
Q Consensus 85 ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~~m~~~~-~~p~~~t~~~ll~~~~~~ 159 (820)
-|++..+-.-++.|..+-..-.-+ ...-..+ ..-+.+.|++++|..-|-+ .-| +.| +.+++-+-..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~---tI~~le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIE---TIGFLEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HcccCCh-----HHHHHHhcCH
Confidence 455556666666676665443222 2122222 3344678999999877754 333 233 2334444222
Q ss_pred cc---hHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC
Q 003439 160 VD---GKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP 205 (820)
Q Consensus 160 ~~---~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 205 (820)
.. --..++.+.+.|+.. ..--+.|++.|.+.++.+.-.+..+.-.
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 22 122344556677543 3344678888888888888777766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 1e-12
Identities = 100/630 (15%), Positives = 183/630 (29%), Gaps = 171/630 (27%)
Query: 39 DC--LENESREI----DFDDLFQSCTKLHHVKRLHALLVVSGK-IKTVFSSTKLVNFYAN 91
DC +++ + I + D + S + RL L+ + + F L Y
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 92 LGD------LSFSRHTFDHISYRN-VYTWNSMISVY--VRCGRLSEAVDCFYQFTLTSGL 142
L S T +I R+ +Y N + + Y R + + L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE------L 147
Query: 143 RPDFYTF--------PPVL--KACRNLVDGKKIHCSVLKLGFE--W--------DVFVAA 182
RP + C + K+ C K+ F+ W V
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLS----YKVQC---KMDFKIFWLNLKNCNSPETVLE 200
Query: 183 SLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSM 242
L + + +R S A + +S L +L ++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------ 254
Query: 243 DPITVAS------ILPVCAR----SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKF 292
+ + IL + R +D + + H+ + H + + + ++ K+
Sbjct: 255 NAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKY 310
Query: 293 GMMRHALRVFDQMMERDVVSWN----SIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTL 348
L Q + R+V++ N SIIA + T + + + D LT
Sbjct: 311 ------LDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNW----KH--VNCDKLTT 357
Query: 349 VSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 408
+ +S+ L + + F I + L +I
Sbjct: 358 IIESSL-NVLEPAEYRKMFDRLSV----FPPSAHIPTIL------LSLI----------- 395
Query: 409 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECN-----EINPNQGTYVSILPAYSHVGA 463
W +I +V ++ + + E P + T SI Y +
Sbjct: 396 ------WFDVIK-----------SDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKV 437
Query: 464 -LRQGIKIHARVI-----KNCLCFDVFVATCLVDMY-----G---KCGRIDDAMSLFYQV 509
L +H ++ D + L D Y G K + M+LF V
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 510 ----------PRSSSVPWNAIISCHGIHGQGDKALNFFRQML------DEGVRPDHITFV 553
R S WNA S Q L F++ + E + + F
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDNDPKYERLVNAILDF- 551
Query: 554 SLLTACSHSGLVSEGQRYFH--MMQEEFGI 581
L + + S+ +M E+ I
Sbjct: 552 --LPKIEENLICSKYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 5e-06
Identities = 92/653 (14%), Positives = 196/653 (30%), Gaps = 181/653 (27%)
Query: 230 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI-HLYIVKHGLE-----FNLFVSN 283
D+ D + +ILS I H+ + K + F +S
Sbjct: 37 DVQDMPK----------------------SILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 284 NLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAY-EQSNDPITAHGFFTTMQQAGIQ 342
M KF ++++ + + +++ + P + +
Sbjct: 75 QE-EMVQKF---------VEEVLRINY-KF--LMSPIKTEQRQPSMMTRMYIEQRD---- 117
Query: 343 PDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGI-----I 397
L + + A+ N R + ++ R +E N ++ LG
Sbjct: 118 ----RLYNDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLI--DGVLGSGKTWVA 167
Query: 398 NSACAVFEGLPVKDV-ISWNTLITGYAQNGLASEAIEVFQMMEE-CNEINPNQGTYVSIL 455
C ++ D I W L + V +M+++ +I+PN +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 456 PAYSH-VGALRQGIK--IHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVP 510
+ +++ ++ + ++ +NCL +V A C +I L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KI-----LL--TT 272
Query: 511 RSSSVPWNAIISCHGIH------GQG---DKALNFFRQMLDEGVRPDHITFVSL-LTACS 560
R V + + + H D+ + + L RP L +
Sbjct: 273 RFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQ-----DLPREVLT 324
Query: 561 HS----GLVSEGQRYFHMMQEEFGIKPHLKHYGC-----MVDLFGRAGHLG---MAHNFI 608
+ +++E +++ + KH C +++ L F
Sbjct: 325 TNPRRLSIIAE------SIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMF- 375
Query: 609 QNMPV-RPDASIWGALLGACRIHGNME-------LGAVASDRLFEVDSENVGYYVLMSNI 660
+ V P A I LL I ++ + + L E + + +I
Sbjct: 376 DRLSVFPPSAHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SI 431
Query: 661 YANV-GKWEGVDEV--RSLARDRGLKKTPGWSSIEVNNKVD--IF-YTGNRTHPK----- 709
Y + K E + + K + +D + + G+ H K
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDD--LIPPYLDQYFYSHIGH--HLKNIEHP 487
Query: 710 -----YEKIYDELRNLTAKMKSLGYVPDKSF----VLQDVEEDEKEHILTSHS--ERLAI 758
+ ++ + R L K++ + S LQ ++ K +I + ERL
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYERLVN 546
Query: 759 AFGIISSPPKSPIQIFKNLRVCG-DCHNWTKF--ISQI---TEREIIVRDSNR 805
A I L + +K+ + +I E E I ++++
Sbjct: 547 A-------------ILDFLPKIEENLIC-SKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 26/194 (13%), Positives = 52/194 (26%), Gaps = 50/194 (25%)
Query: 639 ASDRLFEV--DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNK 696
+ RLF + + + K+ + +++ R P + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQ------PSMMTRMYIEQ 115
Query: 697 VDIFYTGNRTHPKY----EKIYDELRNLTAKMKSLGYVP-------DKSFVLQDVEEDEK 745
D Y N+ KY + Y +LR +++ V K++V DV K
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 746 EHILTSHSERLAIAFGIISSPPKSPIQIFKNLRVCGDCHNWTKFISQITEREIIVRDSNR 805
K +IF W + + ++
Sbjct: 176 VQ-------------------CKMDFKIF-----------WLNLKNCNSPETVLEMLQKL 205
Query: 806 FHHFKDGICSCGDY 819
+ S D+
Sbjct: 206 LYQIDPNWTSRSDH 219
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.1 bits (162), Expect = 2e-11
Identities = 24/203 (11%), Positives = 56/203 (27%), Gaps = 9/203 (4%)
Query: 423 AQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 482
L+ + + +P + +L +L + + L
Sbjct: 67 EPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQ 126
Query: 483 VFVATCLVDMYGKCGRIDDAMSL---FYQVPRSSSVP----WNAIISCHGIHGQGDKALN 535
++ A L + + + +NA++ G + +
Sbjct: 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186
Query: 536 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG-QRYFHMMQEEFGIKPHLKHYGCMVDL 594
+ D G+ PD +++ + L + +R M + G+K ++
Sbjct: 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSE 245
Query: 595 FGRAGHLGMAHNFIQNMPVRPDA 617
RA L H + P
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 1e-08
Identities = 26/251 (10%), Positives = 58/251 (23%), Gaps = 39/251 (15%)
Query: 336 MQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG 395
+QA P L L ++ G + A
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQ-HSQAQLSGQQQRLLAFFKCCLLTD 141
Query: 396 IINSACAVFEGL-------PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 448
+ A + + + +N ++ G+A+ G E + V M+++ + P+
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDL 200
Query: 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 508
+Y + L I+ CL M + ++ +
Sbjct: 201 LSYAAALQCMGRQDQDAGTIE-----------------RCLEQMSQEGLKLQALFT---- 239
Query: 509 VPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 568
++S P + LL
Sbjct: 240 ---------AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
Query: 569 QRYFHMMQEEF 579
+ ++
Sbjct: 291 PKLHLPLKTLQ 301
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 1e-07
Identities = 19/232 (8%), Positives = 62/232 (26%), Gaps = 11/232 (4%)
Query: 228 ALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLIN 287
A + D R S +A +L ++ + L
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 288 MYAKFGMMRHALRVFDQMMER-------DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG 340
+ A + + + +N+++ + + ++ AG
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 341 IQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSA 400
+ PDLL+ + + + + + M + + ++ + ++ +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 401 CAVFEGL----PVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 448
V + ++ + L+ ++ ++ + Q
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 8/137 (5%)
Query: 183 SLLHMYCRFGLANVARKLFDDM-------PVRDSGSWNAMISGYCQSGNAVEALDILDEM 235
+ +A L + +NA++ G+ + G E + +L +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 236 RLEGVSMDPITVASILPVCARSDNILSGLL-IHLYIVKHGLEFNLFVSNNLINMYAKFGM 294
+ G++ D ++ A+ L R D + + + GL+ + L++ + +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 295 MRHALRVFDQMMERDVV 311
++ +V +
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.39 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.35 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.35 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.35 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.34 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.32 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.32 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.21 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.16 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.13 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.1 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.07 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.01 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.87 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.86 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.8 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.64 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.58 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.57 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.55 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.53 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.51 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.5 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.44 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.4 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.39 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.36 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.21 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.2 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.15 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.14 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.07 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.05 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.02 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.96 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.96 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.96 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.95 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.94 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.92 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.9 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.89 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.85 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.82 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.78 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.78 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.76 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.51 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.44 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.38 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.27 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.19 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.17 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.14 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.75 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.56 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.47 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.14 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.97 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.67 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.29 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.24 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.95 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.55 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.55 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.1 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.54 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.66 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.01 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 86.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 81.53 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.16 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 80.37 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.28 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=393.51 Aligned_cols=481 Identities=9% Similarity=-0.043 Sum_probs=400.2
Q ss_pred HhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHH
Q 003439 187 MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 266 (820)
Q Consensus 187 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (820)
.+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356778889999999999999999999999999999999999999999984 568889999999999999999999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC-------------------CchHHHHHHHHHHhCCChh
Q 003439 267 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-------------------DVVSWNSIIAAYEQSNDPI 327 (820)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------d~~~~~~li~~~~~~g~~~ 327 (820)
++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965433 4789999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCcchH-HHHHHHHHhcCcch--hhhhH-HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHH
Q 003439 328 TAHGFFTTMQQAGIQPDLLTL-VSLTSIVAQLNDCR--NSRSV-HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 403 (820)
Q Consensus 328 ~A~~~~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 403 (820)
+|+++|++|.+.+ |+..+. ..+...+...+..+ ....+ +..+...+ ......+++.++.+|.+.|++++|.++
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999998853 554433 33332222221111 11111 34444444 555667788889999999999999999
Q ss_pred HhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC
Q 003439 404 FEGLPV--KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 481 (820)
Q Consensus 404 f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 481 (820)
|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+ .+ +.+..++..++.++.+.|++++|.++++.+.+.. +.
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE-ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999987 7999999999999999999999999999987 33 2367789999999999999999999999998764 45
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 78899999999999999999999999875 5667899999999999999999999999999853 3467899999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHh
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPD--ASIWGALLGACRI 629 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~ 629 (820)
|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999864 2346789999999999999999999999988 44787 7799999999999
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|+..++++++++|+++..|..++++|.+.|++++|.++++++.+.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999876
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=394.18 Aligned_cols=498 Identities=10% Similarity=-0.038 Sum_probs=349.6
Q ss_pred HHHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc---hH
Q 003439 87 NFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GK 163 (820)
Q Consensus 87 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~ 163 (820)
..+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++ |. +..|+..++..+..+|...++ |.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEK-VL--DITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHH-HH--HHHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHH-HH--hhCCCchHHHHHHHHHHHcCcHHHHH
Confidence 3456778888888889988888899999999999999999999999998 54 355777888888888877777 66
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCC-------------------CcccHHHHHHHHHhCCC
Q 003439 164 KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-------------------DSGSWNAMISGYCQSGN 224 (820)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~ 224 (820)
.++..+.. .++++.+++.++.+|.++|++++|+++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 66665543 3788999999999999999999999999964433 47899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-hHHHHhHHHhhhcCCChHH--HHHH-HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHH
Q 003439 225 AVEALDILDEMRLEGVSMD-PITVASILPVCARSDNILS--GLLI-HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 300 (820)
Q Consensus 225 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 300 (820)
+++|+++|++|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998754 44 3444444444433322221 1111 4444555555566778888999999999999999
Q ss_pred HHhccCC--CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcC
Q 003439 301 VFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 378 (820)
Q Consensus 301 ~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 378 (820)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+. .+..++..++.++...|+.+.|..++..+.+.. +
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 370 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--P 370 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--c
Confidence 9999988 7899999999999999999999999999987531 133444444444444444444444444433221 2
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHh
Q 003439 379 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 458 (820)
Q Consensus 379 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 458 (820)
. +..+|+.++..|.+.|++++|.++|+++.+ ..|
T Consensus 371 ~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------------ 404 (597)
T 2xpi_A 371 E-------------------------------KAVTWLAVGIYYLCVNKISEARRYFSKSST---MDP------------ 404 (597)
T ss_dssp T-------------------------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCT------------
T ss_pred c-------------------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCC------------
Confidence 2 333444444444444444444444444433 111
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHH
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALN 535 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 535 (820)
.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|++
T Consensus 405 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 405 ----------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 234455555556666666666666665543 3455667777777778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 536 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPH--LKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 536 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
+|++|.+.. +.+..+|..++.+|.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+.+++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888752 3356788888888899999999999988887543 56777 67999999999999999999999988
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 611 M-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 611 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
+ ...| +..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 7 3344 788999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-24 Score=236.58 Aligned_cols=370 Identities=14% Similarity=0.174 Sum_probs=251.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh-HHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 216 ISGYCQSGNAVEALDILDEMRLEGVSMDP-ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 216 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
...+.+.|++++|++.++++.+. .|+. ..+..+...+...|++++|...+...++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34456677777777777766553 2332 333334444555566666666665555543 3345556666666666666
Q ss_pred HHHHHHHHhccCC--C-CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHH
Q 003439 295 MRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 371 (820)
Q Consensus 295 ~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 371 (820)
+++|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------- 130 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-------------------------------- 130 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------
Confidence 6666666655532 2 3334555666666666666666666555442
Q ss_pred HHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc
Q 003439 372 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 448 (820)
Q Consensus 372 ~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 448 (820)
. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|+.+...|.+.|++++|+..|+++.+ ..|+
T Consensus 131 ---~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~- 201 (388)
T 1w3b_A 131 ---N--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPN- 201 (388)
T ss_dssp ---C--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTT-
T ss_pred ---C--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC-
Confidence 1 2233334444555555555555555555442 22345566666666666666666666666655 2232
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
+...+..+...+...|++++|...|++.. +.+...|..+...|.
T Consensus 202 ---------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 202 ---------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp ---------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 33455556666667777777777766544 345566778888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA 604 (820)
..|++++|++.|+++.+ ..|+ ..++..+..++...|++++|.+.|+.+.+. .+.+...+..+..+|.+.|++++|
T Consensus 249 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999988 4565 468888999999999999999999999864 345678899999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 605 HNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 605 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
.+.++++ ...|+ ..+|..+...+.+.|++++|+..++++++++|+++..+..++.+|...|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999987 44554 66999999999999999999999999999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-27 Score=259.43 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC---------hhHHHHHHHHHHHhCCCCch
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA---------LRQGIKIHARVIKNCLCFDV 483 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~---------~~~a~~i~~~~~~~g~~~~~ 483 (820)
..++.+|.+|++.|+.++|+++|++|.+ .|+.||.+||+++|.+|+..+. ++.|.++|+.|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 4578889999999999999999999998 9999999999999999987654 67899999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 559 (820)
.+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 6789999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 598 (820)
++.|++++|.+++++|.+. |..|+..+|+.+++.|.+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999876 9999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=260.76 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=146.6
Q ss_pred HHHHHHHHhCCCCcH-HHHHHHHHHhhcCCChhHHHHHhccCC----CCCcccHHHHHHHHHhCCC---------hhHHH
Q 003439 164 KIHCSVLKLGFEWDV-FVAASLLHMYCRFGLANVARKLFDDMP----VRDSGSWNAMISGYCQSGN---------AVEAL 229 (820)
Q Consensus 164 ~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~---------~~~A~ 229 (820)
.+...+.+.+..+.+ .+++.+|++|+|.|++++|.++|++|. .||.++||+||.+|++.+. .++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444444332 346666777777777777777777775 4677777777777765544 57788
Q ss_pred HHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccC---
Q 003439 230 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM--- 306 (820)
Q Consensus 230 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--- 306 (820)
++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888884
Q ss_pred -CCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcch
Q 003439 307 -ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 362 (820)
Q Consensus 307 -~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 362 (820)
.||..+|++||.+|++.|+.++|.++|++|++.|+.|+..||+.++..++..+...
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~ 227 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATK 227 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHT
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchh
Confidence 37888888888888888888888888888888888888888888888777654433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=229.59 Aligned_cols=349 Identities=15% Similarity=0.096 Sum_probs=283.0
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCH
Q 003439 319 AYEQSNDPITAHGFFTTMQQAGIQPDLL-TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 397 (820)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~ 397 (820)
.+.+.|++++|++.++++.+. .|+.. .+..+...+...|+.+.+...+..+++. .+.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 344455555555555554443 23322 2333333444455555555555555554 366777888889999999999
Q ss_pred HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHH
Q 003439 398 NSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHAR 473 (820)
Q Consensus 398 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~ 473 (820)
++|...|+++. ..+..+|..+...+.+.|++++|++.|+++.+ ..|+... +..+...+...|++++|.+.+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999998764 33566799999999999999999999999987 5677654 45566678888999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-h
Q 003439 474 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-H 549 (820)
Q Consensus 474 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 549 (820)
+++.. +.+..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++..+ +.|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 98875 3357789999999999999999999999886 44566789999999999999999999999998 4675 5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~ 626 (820)
.++..+..++...|++++|.+.|+.+.+. .| +...|..+..+|.+.|++++|.+.++++ . .+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 68889999999999999999999999853 45 4678999999999999999999999987 2 34467799999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|++++|+..+++++++.|++...+..++.+|.+.|++++|...++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=221.52 Aligned_cols=438 Identities=9% Similarity=-0.042 Sum_probs=260.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 003439 211 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 290 (820)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 290 (820)
.|......+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45556667777777777777777777654 577777777777777777777777777777665 335566777777777
Q ss_pred ccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 291 KFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 291 ~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777766533 223333333333333322223333332222222222211111100000000000000001
Q ss_pred HHHHHHhCC--------cCcchhHHhHHHHHHHh---cCCHHHHHHHHhcCCC-----------------CCchHHHHHH
Q 003439 368 HGFIMRRGW--------FMEDVIIGNAVVDMYAK---LGIINSACAVFEGLPV-----------------KDVISWNTLI 419 (820)
Q Consensus 368 ~~~~~~~g~--------~~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~-----------------~~~~~~~~li 419 (820)
...+..... .+.+...+..+...+.. .|++++|...|+.+.. .+...|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000000000 01223333334443443 6777777777765433 1245666777
Q ss_pred HHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 003439 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 499 (820)
Q Consensus 420 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 499 (820)
..+...|++++|+..|+++.. ..|+...+..+...+...|+++.|...++.+.+... .+..++..+...|.+.|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIE---LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 777788888888888887776 334455566667777777888888888777776542 3456677777777888888
Q ss_pred HHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 500 DDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 500 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
++|...|++.. +.+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|.+.++.+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88887777654 345556777777777788888888888877774 34 4456777777777788888888877777
Q ss_pred HHhhCCCCC----hhHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 576 QEEFGIKPH----LKHYGCMVDLFGR---AGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 576 ~~~~g~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 654322222 3367777777777 78888887777765 2233 4557777777777888888888888888887
Q ss_pred CCCCcchHHhH
Q 003439 647 DSENVGYYVLM 657 (820)
Q Consensus 647 ~p~~~~~~~~l 657 (820)
.|+++..+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 77766665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-21 Score=211.80 Aligned_cols=335 Identities=12% Similarity=0.106 Sum_probs=236.2
Q ss_pred CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHH
Q 003439 309 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 388 (820)
Q Consensus 309 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 388 (820)
+...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 45567777788888888888888888876641 2234444444555555555555555555554443 33344445555
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC---c---hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccC
Q 003439 389 DMYAKLGIINSACAVFEGLPVKD---V---ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 462 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~ 462 (820)
.+|.+.|++++|...|+.+...+ . ..|..++..+...+ +..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR------------------------LRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHHcC
Confidence 55555555555555554443221 1 33333333211100 111122355667
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQ 539 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 539 (820)
++++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. +.+...|..+...|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777776654 2366778888889999999999999988875 56677899999999999999999999999
Q ss_pred HHHcCCCCChh-HHHHH------------HHHHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHHcCCH
Q 003439 540 MLDEGVRPDHI-TFVSL------------LTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHL 601 (820)
Q Consensus 540 m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~ 601 (820)
+.+ ..|+.. .+..+ ..+|.+.|++++|.++|+.+.+. .|+ ..++..++.+|.+.|++
T Consensus 237 ~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 987 466654 34333 78899999999999999999864 454 45889999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH------------HHhhhcC--
Q 003439 602 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS------------NIYANVG-- 665 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g-- 665 (820)
++|.+.++++ ...| +..+|..+..+|...|++++|+..++++++++|+++..+..++ +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999987 4445 5789999999999999999999999999999999999999998 6677777
Q ss_pred ---CcchHHHHHHH
Q 003439 666 ---KWEGVDEVRSL 676 (820)
Q Consensus 666 ---~~~~A~~~~~~ 676 (820)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 44455665554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=217.06 Aligned_cols=426 Identities=8% Similarity=-0.054 Sum_probs=320.4
Q ss_pred HHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHH
Q 003439 245 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYE 321 (820)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~ 321 (820)
..+......+...|++++|...+..+++.. |+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345556677888999999999999999986 6899999999999999999999999998754 35678999999999
Q ss_pred hCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhH---HHHHHHhcCCHH
Q 003439 322 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA---VVDMYAKLGIIN 398 (820)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~---li~~y~~~g~~~ 398 (820)
+.|++++|+..|+++...+. ++......++..+........+.+.++.+.+.+ ..++....+. ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT-ATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999988753 455555555555544444444444333222221 0000000000 000011111112
Q ss_pred HHHHHHhcCC---------CC-CchHHHHHHHHHHH---cCChHHHHHHHHhhhh-----cCCC-------CCCcccHhh
Q 003439 399 SACAVFEGLP---------VK-DVISWNTLITGYAQ---NGLASEAIEVFQMMEE-----CNEI-------NPNQGTYVS 453 (820)
Q Consensus 399 ~A~~~f~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~~g~-------~pd~~t~~~ 453 (820)
.+...+.... .+ +...|......+.. .|++++|+..|+++.. .... ..+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2222222221 11 23445445554554 8999999999999876 1111 113456677
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCCh
Q 003439 454 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG 530 (820)
Q Consensus 454 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 530 (820)
+...+...|+++.|..+++.+.+.... ...+..+...|...|++++|...|+++. +.+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 788899999999999999999987654 8888999999999999999999998865 44566789999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 531 DKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
++|+..|+++.+. .| +..++..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++
T Consensus 321 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 321 DQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp THHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999984 45 4568888999999999999999999998864 22356788999999999999999999998
Q ss_pred hC----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 610 NM----PVRPD----ASIWGALLGACRI---HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 610 ~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
++ +..|+ ..+|..+...+.. .|++++|+..+++++++.|+++..+..++.+|...|++++|...++++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87 22232 3489999999999 9999999999999999999999999999999999999999999999988
Q ss_pred hC
Q 003439 679 DR 680 (820)
Q Consensus 679 ~~ 680 (820)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=213.29 Aligned_cols=426 Identities=9% Similarity=-0.020 Sum_probs=277.2
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 288 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (820)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.+..+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887653 2356677777777777788888888888777765 3466777788888
Q ss_pred HHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHH
Q 003439 289 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 368 (820)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 368 (820)
|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++.... |+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~------------------------ 155 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG------------------------ 155 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc------------------------
Confidence 88888888888888644 2222233333445555556677777777774321 10
Q ss_pred HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch---HHHHHHHHHHH--------cCChHHHHHHHHh
Q 003439 369 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI---SWNTLITGYAQ--------NGLASEAIEVFQM 437 (820)
Q Consensus 369 ~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~l~~~ 437 (820)
..+........+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|++
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 156 --------RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp -----------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0000011122333344455555555555554443322 22222222211 2467777777777
Q ss_pred hhhcCCCCCCc--------ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 003439 438 MEECNEINPNQ--------GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 509 (820)
Q Consensus 438 m~~~~g~~pd~--------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 509 (820)
+.+ ..|+. .++..+...+...|+++.|...+..+.+.. |+...+..+...|.+.|++++|.+.|+++
T Consensus 228 ~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 228 LLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 765 44542 134445556667777777877777777754 33666777777777888888888877766
Q ss_pred C---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh
Q 003439 510 P---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 585 (820)
Q Consensus 510 ~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~ 585 (820)
. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.++++.+.+. .+.+.
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 378 (537)
T 3fp2_A 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLP 378 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT
T ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 5 445566777888888888888888888888874 443 457777788888888888888888887754 22345
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHhccC
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM----PVRP----DASIWGALLGACRIH----------GNMELGAVASDRLFEVD 647 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~ 647 (820)
..+..+...|.+.|++++|.+.++++ +..+ ....+..+...+... |++++|+..++++++.+
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 67777888888888888888888775 1111 222344455666677 88888888888888888
Q ss_pred CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 648 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 648 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-20 Score=205.85 Aligned_cols=364 Identities=9% Similarity=0.006 Sum_probs=249.4
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003439 276 EFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 352 (820)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 352 (820)
+.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34566777777888888888888888877643 356777888888888888888888888877653 22455677777
Q ss_pred HHHHhcCcchhhhhHHHHHHHhCCcCcch---hHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChH
Q 003439 353 SIVAQLNDCRNSRSVHGFIMRRGWFMEDV---IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 429 (820)
Q Consensus 353 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~---~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 429 (820)
..+...|+++.|...+..+.+.. +.+. ..+..++..+... .+..+...+.+.|+++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHH
Confidence 78888888888888888877754 4455 6666666553322 1223344555667777
Q ss_pred HHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 003439 430 EAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 508 (820)
Q Consensus 430 ~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 508 (820)
+|+..|+++.+ ..| +..++..+...+...|++++|.+++..+.+.. +.+..++..+..+|.+.|++++|...|++
T Consensus 161 ~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 161 AAIAFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777776665 233 34455566666667777777777777666543 23566677777777777777777777776
Q ss_pred CC---CCCccccchH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhcCCHHHH
Q 003439 509 VP---RSSSVPWNAI------------ISCHGIHGQGDKALNFFRQMLDEGVRPDH-----ITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 509 ~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a 568 (820)
+. +.+...|..+ ...|...|++++|++.|+++.+ +.|+. ..+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 65 2233334443 7788889999999999999988 45653 3677788888999999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC---
Q 003439 569 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGA------------CRIHG--- 631 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~g--- 631 (820)
.+.++.+.+. .+.+...|..+..+|.+.|++++|.+.++++ ...|+ ..+|..+..+ |...|
T Consensus 315 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 9999888753 2235678888999999999999999999887 55665 4566666633 33334
Q ss_pred --ChhHHHHHHHH-HhccCCCCcc----------hHHhHHHHhhhcCCcch
Q 003439 632 --NMELGAVASDR-LFEVDSENVG----------YYVLMSNIYANVGKWEG 669 (820)
Q Consensus 632 --~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~y~~~g~~~~ 669 (820)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56788888886 7788887543 23345555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=203.43 Aligned_cols=437 Identities=9% Similarity=0.030 Sum_probs=315.7
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhh
Q 003439 178 VFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 254 (820)
Q Consensus 178 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 254 (820)
...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4566777888999999999999999875 3467889999999999999999999999998764 33567888888999
Q ss_pred hcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC------CchHHHHHHHHHHhCCChhh
Q 003439 255 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER------DVVSWNSIIAAYEQSNDPIT 328 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~ 328 (820)
...|++++|...+. .+.. .|+ ..+..+..+...+....|...++.+... .....+..+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 3322 222 2223344556666778899999888653 12223445555666666666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC
Q 003439 329 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 408 (820)
Q Consensus 329 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 408 (820)
++..+.+... .+ ..+..+..++..... ...-......|++++|..+|+.+.
T Consensus 179 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~------------------------~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 179 EVSSVNTSSN----YD-TAYALLSDALQRLYS------------------------ATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHTSCCCCS----SC-SSHHHHHHHHHHHHT------------------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccc----cc-cHHHHHHHHHHHHHH------------------------hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5554433211 11 111111111111000 000001112245666666666554
Q ss_pred CC---C-------chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhC
Q 003439 409 VK---D-------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 478 (820)
Q Consensus 409 ~~---~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 478 (820)
.. + ..+|..+...+...|++++|+..|++... ..|+...+..+...+...|+++.|.+.+..+.+..
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 32 2 12456666788889999999999999988 56777778888889999999999999999998875
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVS 554 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 554 (820)
. .+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+. .|+ ...+..
T Consensus 307 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 383 (537)
T 3fp2_A 307 P-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTF 383 (537)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHH
T ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 3 467789999999999999999999999876 455677999999999999999999999999995 454 568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCCC-CHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP----HLKHYGCMVDLFGRA----------GHLGMAHNFIQNM-PVRP-DAS 618 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~----------g~~~eA~~~~~~m-~~~p-~~~ 618 (820)
+...+...|++++|.+.|+.+.+...-.+ ....+..+...|.+. |++++|.+.++++ ...| +..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999875432122 122345556778888 9999999999987 3344 567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+|..+...+...|++++|...+++++++.|++.....
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999999999998776544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=176.40 Aligned_cols=308 Identities=11% Similarity=0.086 Sum_probs=209.6
Q ss_pred chHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHH
Q 003439 310 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 389 (820)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~ 389 (820)
+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------------------------------------p~~~~~~~~~a~ 45 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-------------------------------------PDNYIAYYRRAT 45 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------------------cccHHHHHHHHH
Confidence 4566777778888888888888888876642 233344444555
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC---Ccc-cHhhH--------
Q 003439 390 MYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP---NQG-TYVSI-------- 454 (820)
Q Consensus 390 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p---d~~-t~~~l-------- 454 (820)
.|...|++++|...|+... ..+...|..+...|...|++++|+..|++..+ ..| +.. .+..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHH
Confidence 5555555555555555432 22445566666666666777777777766655 344 222 22222
Q ss_pred ----HHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhc
Q 003439 455 ----LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH 527 (820)
Q Consensus 455 ----l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 527 (820)
...+...|++++|.+++..+.+... .+...+..+...|.+.|++++|...|+++. +.+...|..+...|...
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556677777777777777776543 356677778888888888888888887765 34556678888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-HHH------------HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-----hHHH
Q 003439 528 GQGDKALNFFRQMLDEGVRPDHI-TFV------------SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-----KHYG 589 (820)
Q Consensus 528 g~~~~A~~l~~~m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~~ 589 (820)
|++++|+..|++..+. .|+.. .+. .+...+...|++++|.+.++.+.+. .|+. ..+.
T Consensus 202 ~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 202 GDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKE 276 (359)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHH
Confidence 8888888888888874 45433 222 2255677888888888888887754 2332 2355
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
.+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..|..++..
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 5777888888888888888876 3344 566888888888888888888888888888888888777777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-17 Score=175.82 Aligned_cols=293 Identities=11% Similarity=0.035 Sum_probs=244.6
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHH
Q 003439 380 DVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSIL 455 (820)
Q Consensus 380 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll 455 (820)
|+..+..+...|.+.|++++|...|+.+. ..+...|..+...|...|++++|+..|+++.+ ..| +...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---LKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCcchHHHHHH
Confidence 44566778889999999999999998764 34677899999999999999999999999987 456 446677888
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHhhCC---CCCccccc
Q 003439 456 PAYSHVGALRQGIKIHARVIKNCLC--FDVFVATCL------------VDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 518 (820)
Q Consensus 456 ~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 518 (820)
..+...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.|+++. +.+...|.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 8899999999999999999886431 234444444 578999999999999999876 55667799
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHH-------
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYG------- 589 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~------- 589 (820)
.+...|...|++++|+..++++.+. .| +..++..+...+...|++++|.+.++...+. .|+. ..+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHH
Confidence 9999999999999999999999984 45 5568889999999999999999999998854 3432 2222
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 590 -----CMVDLFGRAGHLGMAHNFIQNM-PVRPD-A----SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 590 -----~li~~~~~~g~~~eA~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|+..++++++.+|+++..+..++
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3367799999999999999987 33344 2 23556778899999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 003439 659 NIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+|...|++++|...++++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999998865
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-14 Score=167.00 Aligned_cols=380 Identities=11% Similarity=0.043 Sum_probs=292.9
Q ss_pred HHHHhHHHhhhcCCChHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 003439 245 ITVASILPVCARSDNILSGLLIHLYIVKHG--LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 322 (820)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 322 (820)
.-....++++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....+....-+ ..-+...+.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 334556778888888999999988888432 123456667777777666 4455555555554323 4457788889
Q ss_pred CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHH
Q 003439 323 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 402 (820)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~ 402 (820)
.|.+++|..+|++.. -.......++ ...++++.|.++...+ .+..+|..+..++.+.|++++|..
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999952 1111122222 2667788888877643 447788999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCc
Q 003439 403 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 482 (820)
Q Consensus 403 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 482 (820)
.|... .|...|..++..+.+.|++++|++.|...++ ..++....+.+..+|++.++++....+. + .++
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk---~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 99764 6788899999999999999999999998776 3355444456888999998888644442 2 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 562 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 562 (820)
...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+..+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 566777999999999999999999885 47999999999999999999999876 3558899999999999
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc--CChhHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIH--GNMELGAV 638 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~--g~~~~a~~ 638 (820)
|++..|..... ++.-++..+..++..|.+.|.+++|+.+++.. +.+|... .|.-|...+.+. +++.++.+
T Consensus 1264 ~Ef~LA~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999988654 34456678889999999999999999999876 5565443 776666666655 57778888
Q ss_pred HHHHHhccCC-----CCcchHHhHHHHhhhcCCcchHHH
Q 003439 639 ASDRLFEVDS-----ENVGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 639 ~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
.|..-..+.| ++...|.-++-+|.+.|+|+.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888777776 678888999999999999999984
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-16 Score=166.21 Aligned_cols=285 Identities=12% Similarity=0.085 Sum_probs=225.1
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHh
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYV 452 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~ 452 (820)
.+.+..+...+...+...|++++|.++|+.+. ..+...+..++..+.+.|++++|+.+|+++.+ ..| +...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---LYPSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHH
Confidence 45566667777777888888888888887764 23455667777888888888888888888877 344 445666
Q ss_pred hHHHHhhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcC
Q 003439 453 SILPAYSHVG-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHG 528 (820)
Q Consensus 453 ~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 528 (820)
.+...+...| ++++|.+.++.+.+... .+...+..+...|...|++++|.+.|++.. +.+..+|..+...|...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 7777778888 88888888888877642 356678888899999999999999998776 445566788888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-------CCChhHHHHHHHHHHHcCC
Q 003439 529 QGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI-------KPHLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~-------~p~~~~~~~li~~~~~~g~ 600 (820)
++++|++.|++..+. .|+ ..++..+...+...|++++|..+++.+.+...- ......+..+...|.+.|+
T Consensus 174 ~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999884 454 568888888999999999999999988764311 3345788899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh-hhcCCc
Q 003439 601 LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY-ANVGKW 667 (820)
Q Consensus 601 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~ 667 (820)
+++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999887 3334 5668899999999999999999999999999999999999999888 455554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-13 Score=160.50 Aligned_cols=251 Identities=14% Similarity=0.148 Sum_probs=171.0
Q ss_pred hcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHH
Q 003439 393 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 472 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 472 (820)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+++.
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666666665542 3556777777777777777777777543 244556667777777777777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 003439 473 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 552 (820)
Q Consensus 473 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 552 (820)
...+.. ++..+.+.++..|++.+++++..... ..++...|..+...|...|++++|..+|... ..|
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 766654 33333445777777777777544443 2344455666777777777777777777764 267
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 632 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 632 (820)
..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|........ -++..+..++..|...|.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCC
Confidence 77777777777777777777544 234667777777777777777777665432 334445578888889999
Q ss_pred hhHHHHHHHHHhccCCCCcchHHhHHHHhhhc--CCcchHHHHHH
Q 003439 633 MELGAVASDRLFEVDSENVGYYVLMSNIYANV--GKWEGVDEVRS 675 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~--g~~~~A~~~~~ 675 (820)
+++|+.++++.++++|.+.+.+.-|+.+|++- ++..|+.++|.
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999998888887777777654 34445555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=165.21 Aligned_cols=283 Identities=13% Similarity=0.134 Sum_probs=112.7
Q ss_pred cCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHH
Q 003439 190 RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 269 (820)
Q Consensus 190 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (820)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999997664 9999999999999999999999763 6888999999999999999999998888
Q ss_pred HHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHH
Q 003439 270 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 349 (820)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 349 (820)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~- 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF- 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH-
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH-
Confidence 7774 45678899999999999999999988864 77789999999999999999999999976 234
Q ss_pred HHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChH
Q 003439 350 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 429 (820)
Q Consensus 350 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 429 (820)
..|++.+.+.|++++|.+.+... .++.+|..++.+|...|+++
T Consensus 152 -----------------------------------~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 152 -----------------------------------GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -----------------------------------HHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------HHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHH
Confidence 55556666666666666666665 25666777777777777777
Q ss_pred HHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHHh
Q 003439 430 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK--CGRIDDAMSLFY 507 (820)
Q Consensus 430 ~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~ 507 (820)
.|......+. +.|+. ...++..|.+.|.++++..+++..+... +....+++-|.-+|+| -+++.+..+.|.
T Consensus 195 lA~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 195 LAQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6644333221 23333 3345566666677777766666665443 3445566666666654 356666777775
Q ss_pred hCC---C-----CCccccchHHHHHHhcCChHHHHHHHHHHHH
Q 003439 508 QVP---R-----SSSVPWNAIISCHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 508 ~~~---~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 542 (820)
.-. + .+...|..+.-.|.+.++++.|.. .|.+
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~ 307 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMN 307 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHh
Confidence 433 2 345669999999999999998876 4555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-16 Score=167.45 Aligned_cols=279 Identities=9% Similarity=-0.034 Sum_probs=220.1
Q ss_pred HHhcCCHHHHHH-HHhcCCC---C----CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhcc
Q 003439 391 YAKLGIINSACA-VFEGLPV---K----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHV 461 (820)
Q Consensus 391 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~ 461 (820)
|.-.|++++|.. .|+.... . +...|..+...+.+.|++++|+..|+++.+ ..| +..++..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC
Confidence 344577788887 7764432 1 356688888899999999999999999887 445 445677777888899
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccch---------------HHHH
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNA---------------IISC 523 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~---------------li~~ 523 (820)
|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. +.+...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999988875 3467788889999999999999999998765 233333332 2444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPD---HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 600 (820)
+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|.+.++.+.+. .+.+...+..+...|.+.|+
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCC
Confidence 44899999999999999985 455 678889999999999999999999998854 23356789999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------cchHHhHHHHhhhcCCc
Q 003439 601 LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-----------VGYYVLMSNIYANVGKW 667 (820)
Q Consensus 601 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~ 667 (820)
+++|.+.++++ ...| +..+|..+...+...|++++|+..+++++++.|++ ...+..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999987 3344 56799999999999999999999999999999987 78899999999999999
Q ss_pred chHHHHHHHH
Q 003439 668 EGVDEVRSLA 677 (820)
Q Consensus 668 ~~A~~~~~~m 677 (820)
++|..++++.
T Consensus 347 ~~A~~~~~~~ 356 (368)
T 1fch_A 347 DAYGAADARD 356 (368)
T ss_dssp GGHHHHHTTC
T ss_pred HhHHHhHHHH
Confidence 9999887643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=160.17 Aligned_cols=262 Identities=10% Similarity=0.067 Sum_probs=226.2
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 488 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 488 (820)
.+...+..+...+...|++++|+++|+++.+ ..| +...+..+...+...|++++|..++..+.+... .+...+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 4667788888999999999999999999987 344 344556677888999999999999999988753 36778888
Q ss_pred HHHHHHhcC-CHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 003439 489 LVDMYGKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSG 563 (820)
Q Consensus 489 li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 563 (820)
+...|...| ++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999866 445667999999999999999999999999995 454 567778999999999
Q ss_pred CHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcC
Q 003439 564 LVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV----------RPDASIWGALLGACRIHG 631 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g 631 (820)
++++|.++++.+.+ ..| +...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|
T Consensus 174 ~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 174 NSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp CHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999874 344 5678899999999999999999999876 11 234568999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999887644
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=167.83 Aligned_cols=354 Identities=12% Similarity=0.067 Sum_probs=165.9
Q ss_pred ccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHH
Q 003439 291 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 370 (820)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 370 (820)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 8999999999999999999999763 6788999999999999999999998887
Q ss_pred HHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCccc
Q 003439 371 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 450 (820)
Q Consensus 371 ~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 450 (820)
..+. .+++.+.+.|+.+|.|+|+++++.++++. ++..+|+.+...|...|++++|..+|..+ ..
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n 150 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TC
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hh
Confidence 7774 35578899999999999999999988864 67789999999999999999999999976 36
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCCh
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 530 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 530 (820)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999999877 378899999999999999999987776654 3333344688899999999
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh--cCCHHHHHHHHHHhHHhhCCCC------ChhHHHHHHHHHHHcCCH
Q 003439 531 DKALNFFRQMLDEGVRPDH-ITFVSLLTACSH--SGLVSEGQRYFHMMQEEFGIKP------HLKHYGCMVDLFGRAGHL 601 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~g~~p------~~~~~~~li~~~~~~g~~ 601 (820)
++|+.+++..+. ..|-. ..|+.|.-++++ .+++.+.++.|.. +..++| +..+|.-++.+|...|++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999886 45544 356666555554 4556666665543 335555 567899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----------cchHHhHHHHhhhcCCcchHH
Q 003439 602 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN----------VGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 602 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~y~~~g~~~~A~ 671 (820)
+.|...+-+-+ |+..--........+-.+.|.--++..--++-.|.- ---+...+.++.+.|.+.-+.
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~ 376 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVK 376 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTH
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHH
Confidence 99987765542 121111122222233333333222222222222210 001234455667777777777
Q ss_pred HHHHHHHhCCC
Q 003439 672 EVRSLARDRGL 682 (820)
Q Consensus 672 ~~~~~m~~~~~ 682 (820)
.+++.+.+.+.
T Consensus 377 ~yl~~v~~~n~ 387 (449)
T 1b89_A 377 PYLRSVQNHNN 387 (449)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhhH
Confidence 77776665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-14 Score=165.14 Aligned_cols=410 Identities=9% Similarity=0.023 Sum_probs=253.9
Q ss_pred ChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCchHHHHHHHH-
Q 003439 243 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAA- 319 (820)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~- 319 (820)
|...|..++.. ...|+++.|..+++.+++.- +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44556666653 55677777777777776542 34566677777777777777777777776654 455556555542
Q ss_pred HHhCCChhhHHH----HHHHHHHc-CCCCCc-chHHHHHHHHHh---------cCcchhhhhHHHHHHHhCCcCcchhHH
Q 003439 320 YEQSNDPITAHG----FFTTMQQA-GIQPDL-LTLVSLTSIVAQ---------LNDCRNSRSVHGFIMRRGWFMEDVIIG 384 (820)
Q Consensus 320 ~~~~g~~~~A~~----~~~~m~~~-g~~pd~-~t~~~ll~a~~~---------~~~~~~a~~i~~~~~~~g~~~~~~~~~ 384 (820)
....|+.++|.+ +|++.... |..|+. ..|...+..... .|+.+.++.++..+++.. ......++
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHH
Confidence 234566665554 44444332 433332 233333332222 344445555555544411 11111111
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhh------hcCC---CCCCc-------
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME------ECNE---INPNQ------- 448 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~~g---~~pd~------- 448 (820)
..........|. ..+..++. .+.+++++|..++.++. + .. +.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~-~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLD-RNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCC-SSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhc-cccccCCCCCChhHHHH
Confidence 111111000000 00111110 12345666766666522 1 11 23331
Q ss_pred -ccHhhHHHHhhc----cCCh----hHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 003439 449 -GTYVSILPAYSH----VGAL----RQGIKIHARVIKNCLCFDVFVATCLVDMYGK-------CGRID-------DAMSL 505 (820)
Q Consensus 449 -~t~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~ 505 (820)
..+...+.-... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 122222222111 1222 36667888887763 3467788888888775 79987 89999
Q ss_pred HhhCCC----CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh
Q 003439 506 FYQVPR----SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEF 579 (820)
Q Consensus 506 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 579 (820)
|++... .+...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|.++|+...+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-- 384 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-- 384 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 997763 3456699999999999999999999999999 56764 3788888888899999999999998874
Q ss_pred CCCCC-hhHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc---
Q 003439 580 GIKPH-LKHYGCMVDL-FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG--- 652 (820)
Q Consensus 580 g~~p~-~~~~~~li~~-~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 652 (820)
..|. ...|...+.+ +...|+.++|.++|++. ...| +...|..++..+...|+.++|+.+|+++++..|.++.
T Consensus 385 -~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 385 -DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp -CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred -ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 3443 3333332222 34689999999999976 3345 5679999999999999999999999999998776655
Q ss_pred -hHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 653 -YYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 653 -~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+...+......|+.+.+..+.+++.+.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667778888899999999999888765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-15 Score=166.02 Aligned_cols=351 Identities=10% Similarity=0.008 Sum_probs=238.4
Q ss_pred cCCHHHHHHHHhccCC-CCchHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCcch
Q 003439 292 FGMMRHALRVFDQMME-RDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ----LNDCR 362 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~ 362 (820)
.+++++|...|+...+ .+..++..|...|.. .+++++|+++|++..+.| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444444444443322 233344444444444 444445555554444432 22333333333333 34445
Q ss_pred hhhhHHHHHHHhCCcCcchhHHhHHHHHHHh----cCCHHHHHHHHhcCCC-CCchHHHHHHHHHHH----cCChHHHHH
Q 003439 363 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK----LGIINSACAVFEGLPV-KDVISWNTLITGYAQ----NGLASEAIE 433 (820)
Q Consensus 363 ~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~ 433 (820)
.|...+....+.| +......|..+|.. .++.++|.+.|+...+ .+..++..+...|.+ .++.++|++
T Consensus 133 ~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 133 ESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 5555555444443 33445555666665 6677777777765443 356677777777777 788888888
Q ss_pred HHHhhhhcCCCCCCcccHhhHHHHhhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHH
Q 003439 434 VFQMMEECNEINPNQGTYVSILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK----CGRIDDAMSL 505 (820)
Q Consensus 434 l~~~m~~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~ 505 (820)
.|++..+ .+ +...+..+...+.. .++.++|.++++...+.| +...+..|..+|.. .++.++|.+.
T Consensus 209 ~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 209 WYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 8888776 43 33445555555554 678888888888887765 45566677777777 8899999999
Q ss_pred HhhCC-CCCccccchHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHhH
Q 003439 506 FYQVP-RSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG---LVSEGQRYFHMMQ 576 (820)
Q Consensus 506 ~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~ 576 (820)
|++.. ..+...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|+...
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 98876 34555677778888777 89999999999999865 4456677777777756 7899999999887
Q ss_pred HhhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 003439 577 EEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 577 ~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 648 (820)
+. .+...+..|..+|.. .++.++|.+.+++.-...+...+..|...|.. .++.++|...++++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 54 367788889999998 89999999999987333467788899999988 8999999999999999985
Q ss_pred C---CcchHHhHHHHhhh
Q 003439 649 E---NVGYYVLMSNIYAN 663 (820)
Q Consensus 649 ~---~~~~~~~l~~~y~~ 663 (820)
+ ++.....|+.++..
T Consensus 435 ~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHTTSCHH
T ss_pred CCcCCHHHHHHHHhcCHh
Confidence 4 67777777776654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-14 Score=162.42 Aligned_cols=409 Identities=10% Similarity=0.100 Sum_probs=282.6
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHH
Q 003439 207 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 286 (820)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (820)
.|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|..+++.+++.. |++..|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36678888887 47889999999999998865 23345577788888888999999999999988764 5777777777
Q ss_pred H-HHHccCCHHHHHH----HHhccC-----C-CCchHHHHHHHHHHh---------CCChhhHHHHHHHHHHcCCCCCcc
Q 003439 287 N-MYAKFGMMRHALR----VFDQMM-----E-RDVVSWNSIIAAYEQ---------SNDPITAHGFFTTMQQAGIQPDLL 346 (820)
Q Consensus 287 ~-~y~~~g~~~~A~~----~f~~m~-----~-~d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~ 346 (820)
. .....|+.++|.+ +|+... . ++...|...+....+ .|++++|..+|++.... |+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 5 3345677777665 666542 1 356778888876655 68899999999999872 4321
Q ss_pred hHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc-------CC------CCC--
Q 003439 347 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG-------LP------VKD-- 411 (820)
Q Consensus 347 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~------~~~-- 411 (820)
...+...+... +.. .| ..+...++. .+.++++.|..++.. +. .++
T Consensus 164 -~~~~~~~~~~~---e~~---------~~-----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 164 -IEQLWRDYNKY---EEG---------IN-----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp -HHHHHHHHHHH---HHH---------HC-----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred -HHHHHHHHHHH---HHh---------hc-----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 11111122110 000 00 000011110 122334445444332 11 111
Q ss_pred ------chHHHHHHHHHHHc----CCh----HHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhc-------cCChh----
Q 003439 412 ------VISWNTLITGYAQN----GLA----SEAIEVFQMMEECNEINPN-QGTYVSILPAYSH-------VGALR---- 465 (820)
Q Consensus 412 ------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~-------~~~~~---- 465 (820)
...|...+.-...+ ++. ++|+.+|++... ..|+ ...+......+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~---~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 24566655433332 222 478889998887 4554 3445555555553 68887
Q ss_pred ---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-Cc-cccchHHHHHHhcCChHHHHHHHH
Q 003439 466 ---QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RS-SS-VPWNAIISCHGIHGQGDKALNFFR 538 (820)
Q Consensus 466 ---~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~ 538 (820)
.|..+++..++.-.+.+...+..++..+.+.|++++|..+|+++. .+ +. ..|..++..+.+.|+.++|.++|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999998863234468889999999999999999999999876 23 32 479999999999999999999999
Q ss_pred HHHHcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 003439 539 QMLDEGVRPD-HITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM----P 612 (820)
Q Consensus 539 ~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~ 612 (820)
+..+. .|+ ...|...... +...|++++|..+|+...+.. +-+...|..+++.+.+.|+.++|..+|++. +
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99984 454 2333332222 346899999999999988653 235688999999999999999999999987 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 613 VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 613 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3332 448999999999999999999999999998885
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=163.18 Aligned_cols=276 Identities=14% Similarity=0.051 Sum_probs=205.4
Q ss_pred CCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHH-HHHhhhhcCCCCC--CcccHhhHHHHhhccCChhHHHHHH
Q 003439 395 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINP--NQGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 395 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
+.++.+...|+.+...+.. .+...|++++|++ .|++......-.| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344445555555433322 3445688999999 8887665121222 3456778888899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003439 472 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548 (820)
Q Consensus 472 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 548 (820)
+.+++.. +.+...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999875 3467888999999999999999999999775 556778999999999999999999999999994 455
Q ss_pred hh-HHHH---------------HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 549 HI-TFVS---------------LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 549 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
.. .+.. .+..+...|++++|.++++.+.+...-.++...+..+..+|.+.|++++|.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 2221 234444899999999999999865322225788999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 612 PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 612 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|.+.|++++|...++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344 56799999999999999999999999999999999999999999999999999999999998765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=163.35 Aligned_cols=258 Identities=8% Similarity=-0.061 Sum_probs=197.8
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
+...|..+...+.+.|++++|+..|+++.+ ..| +..++..+...+...|++++|...++.+++.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL---QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 445577777777777777777777777766 334 34556666777777777777777777777654 2356777888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---Cc----------cccchHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRS---SS----------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP---DHITFV 553 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~---~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~ 553 (820)
...|.+.|++++|...|+++... +. ..+..+...|...|++++|++.|+++.+. .| +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHH
Confidence 88888888888888888776521 11 22344578899999999999999999995 45 467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 554 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 554 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
.+...+...|++++|.+.|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +..+|..+...|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9999999999999999999998864 2335788999999999999999999999987 3445 4779999999999999
Q ss_pred ChhHHHHHHHHHhccCCC------------CcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 632 NMELGAVASDRLFEVDSE------------NVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
++++|+..+++++++.|+ +...+..|+.++...|+.+.+.++.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999887 366788999999999999988877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-15 Score=164.09 Aligned_cols=362 Identities=10% Similarity=0.020 Sum_probs=202.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHhccC-----------C-CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcC---C-
Q 003439 278 NLFVSNNLINMYAKFGMMRHALRVFDQMM-----------E-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG---I- 341 (820)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----------~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~- 341 (820)
....||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|+..+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567777777777788887777776531 1 245678888888888888888888888765421 0
Q ss_pred --CCC-cchHHHHHHHHHh--cCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHH
Q 003439 342 --QPD-LLTLVSLTSIVAQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 416 (820)
Q Consensus 342 --~pd-~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 416 (820)
.++ ..++.....++.. .++++.|...+..+++.. | .+...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p-------------------------------~~~~~~~ 176 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--P-------------------------------KNPEFTS 176 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--T-------------------------------TCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--C-------------------------------CCHHHHH
Confidence 111 1122222222221 123444444444444332 2 2333333
Q ss_pred HHHHH---HHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhHHHHh----hccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 003439 417 TLITG---YAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAY----SHVGALRQGIKIHARVIKNCLCFDVFVATC 488 (820)
Q Consensus 417 ~li~~---~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 488 (820)
.+... +...++.++|++.|++..+ +.|+.. ++..+...+ ...++.++|.++++.+.+... .+..++..
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~---l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~ 252 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIR---LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHH---HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHH
Confidence 33322 2234555666666666555 344332 222222222 223455666666666655432 34455566
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHh-------------------cCChHHHHHHHHHHHHcCCC
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGI-------------------HGQGDKALNFFRQMLDEGVR 546 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~ 546 (820)
+...|.+.|++++|...|++.. +.+...|..+...|.. .+..++|+..|++..+. .
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~ 330 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--N 330 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--C
Confidence 6666666666666666666554 2333344444444422 23467888888888884 4
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh----HHHHHHH-HHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 003439 547 PD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK----HYGCMVD-LFGRAGHLGMAHNFIQNM-PVRPDASI 619 (820)
Q Consensus 547 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~----~~~~li~-~~~~~g~~~eA~~~~~~m-~~~p~~~~ 619 (820)
|+ ..++..+...+...|++++|.+.|++..+. .|+.. .+..+.. .+...|+.++|++.+++. .+.|+...
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 54 457888899999999999999999988743 34332 2333333 234678999999999876 56676554
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeE
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 690 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 690 (820)
+... .+.+..++++.++.+|+++.++..|+.+|...|++++|.+.++++.+.+.......+|
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 4333 3445677888899999999999999999999999999999999998876544444555
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=164.62 Aligned_cols=231 Identities=13% Similarity=0.020 Sum_probs=196.1
Q ss_pred CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHH
Q 003439 447 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISC 523 (820)
Q Consensus 447 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 523 (820)
+...+..+...+.+.|++++|..+++.+++... .+..++..+...|.+.|++++|...|+++. +.+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445678888899999999999999999998753 468889999999999999999999999876 4567789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-H----------HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDHI-T----------FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t----------~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
|...|++++|++.|+++.+. .|+.. . +..+...+...|++++|.++++.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999984 45432 2 23357789999999999999999986533323578999999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
..|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3344 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003439 671 DEVRSLARDR 680 (820)
Q Consensus 671 ~~~~~~m~~~ 680 (820)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-13 Score=154.51 Aligned_cols=352 Identities=13% Similarity=0.031 Sum_probs=291.3
Q ss_pred CCchHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCcchhhhhHHHHHHHhCCcCc
Q 003439 308 RDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ----LNDCRNSRSVHGFIMRRGWFME 379 (820)
Q Consensus 308 ~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 379 (820)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 466667777777777 899999999999998864 45677777777777 889999999999998876
Q ss_pred chhHHhHHHHHHHh----cCCHHHHHHHHhcCCCC-CchHHHHHHHHHHH----cCChHHHHHHHHhhhhcCCCCCCccc
Q 003439 380 DVIIGNAVVDMYAK----LGIINSACAVFEGLPVK-DVISWNTLITGYAQ----NGLASEAIEVFQMMEECNEINPNQGT 450 (820)
Q Consensus 380 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t 450 (820)
+......|..+|.. .++.++|...|+...+. +..++..+...|.. .+++++|++.|++..+ .+ +...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~---~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-QG---NVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHH
Confidence 55667778888988 88999999999876544 66788888888887 7899999999999987 43 4556
Q ss_pred HhhHHHHhhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCC-CCCccccchHH
Q 003439 451 YVSILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK----CGRIDDAMSLFYQVP-RSSSVPWNAII 521 (820)
Q Consensus 451 ~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li 521 (820)
+..+...+.. .++.++|.+.+....+.| +...+..|..+|.. .++.++|.+.|++.. ..+...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666 899999999999998876 56678888888886 899999999999876 44556677777
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 522 SCHGI----HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS-----GLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 522 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
..|.. .++.++|++.|++..+.| +...+..+...+... +++++|.++|+...+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 78877 899999999999998864 455677777888877 8999999999998754 2 456778888
Q ss_pred HHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh--
Q 003439 593 DLFGRAG---HLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN-- 663 (820)
Q Consensus 593 ~~~~~~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 663 (820)
.+|.+.| +.++|.+.|++.-...+...+..|...|.. .++.++|...++++.+.. ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888877 889999999987434578899999999998 899999999999998764 57889999999998
Q ss_pred --cCCcchHHHHHHHHHhCCC
Q 003439 664 --VGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 664 --~g~~~~A~~~~~~m~~~~~ 682 (820)
.+++++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=150.30 Aligned_cols=265 Identities=10% Similarity=-0.003 Sum_probs=185.7
Q ss_pred hcCCHHHHHHHHhcCCCCCc----hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHH
Q 003439 393 KLGIINSACAVFEGLPVKDV----ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 468 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 468 (820)
..|++..|...++.....+. ...-.+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34555555555544433221 1223345556666666666554432 12344445555555566666666666
Q ss_pred HHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 469 KIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 469 ~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
+.++.+.+.+..| +...+..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|++++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 6666665554333 455666777889999999999999998 567778889999999999999999999999985 57
Q ss_pred ChhHH---HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 003439 548 DHITF---VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGA 622 (820)
Q Consensus 548 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ 622 (820)
+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.++++ ...| +..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 75422 12334444568999999999999875 3457788999999999999999999999986 4455 5668999
Q ss_pred HHHHHHhcCChhH-HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHH
Q 003439 623 LLGACRIHGNMEL-GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 623 ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
++..+...|+.++ +.++++++++++|+++... ++..+.+.++++..
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999876 6789999999999887643 34555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-17 Score=184.11 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=128.8
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMP-------VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 247 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 247 (820)
..-..+||+||++||++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4446799999999999999999999997753 689999999999999999999999999999999999999999
Q ss_pred HhHHHhhhcCCCh-HHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC-----CchHHHHHHHHHH
Q 003439 248 ASILPVCARSDNI-LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-----DVVSWNSIIAAYE 321 (820)
Q Consensus 248 ~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~ 321 (820)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+.-+ .+.+.+.|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999888877666666665555321 2334455666676
Q ss_pred hCC
Q 003439 322 QSN 324 (820)
Q Consensus 322 ~~g 324 (820)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-15 Score=152.65 Aligned_cols=246 Identities=13% Similarity=0.055 Sum_probs=201.7
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 496 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 496 (820)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-.|+...+..+...|.+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3445678999999999988754 55654 3445677899999999999876543 2356777888999999999
Q ss_pred CCHHHHHHHHhhCC-----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003439 497 GRIDDAMSLFYQVP-----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 497 g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 571 (820)
|+.++|.+.++++. +.+...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 23455577788999999999999999987 35667888899999999999999999
Q ss_pred HHHhHHhhCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 572 FHMMQEEFGIKPHLKH---YGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 572 ~~~m~~~~g~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
++.+.+. .|+... ..+++..+...|++++|..+|+++ ..+.+..+|+.+..++...|++++|+..+++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999865 465422 123445555669999999999988 23456779999999999999999999999999999
Q ss_pred CCCCcchHHhHHHHhhhcCCcch-HHHHHHHHHhC
Q 003439 647 DSENVGYYVLMSNIYANVGKWEG-VDEVRSLARDR 680 (820)
Q Consensus 647 ~p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~~ 680 (820)
+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987 56888888765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-15 Score=156.42 Aligned_cols=257 Identities=9% Similarity=-0.048 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 492 (820)
.|..+...+...|++++|+.+|+++.+ ..| +...+..+...+...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQ---AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344455555556666666666666554 223 23344445555556666666666666655543 2245566667777
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCccccchH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVP---RSSSVPWNAI--------------IS-CHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 554 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 554 (820)
|.+.|++++|.+.|+++. +.+...+..+ .. .+...|++++|++.++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 777777777777776654 2222223332 22 3778899999999999999853 335678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGN 632 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 632 (820)
+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998854 2335678999999999999999999999987 3334 57799999999999999
Q ss_pred hhHHHHHHHHHhccCCC------------CcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 633 MELGAVASDRLFEVDSE------------NVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+++|...+++++++.|+ +...+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6888999999999999999999887654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-16 Score=179.29 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=116.5
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 551 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 551 (820)
...-..+||+||++|+++|++++|.++|++|. .+|+++||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 552 FVSLLTACSHSGL-VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 552 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
|++||+++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999997 57899999999977 99999999999999888877666666554444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-14 Score=147.66 Aligned_cols=264 Identities=11% Similarity=0.003 Sum_probs=151.5
Q ss_pred CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHH
Q 003439 309 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 388 (820)
Q Consensus 309 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 388 (820)
+...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------------------------~~~~~~~~~~l~ 62 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA-------------------------------------APEREEAWRSLG 62 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------------------------CCCCHHHHHHHH
Confidence 3445667777788888888888888887664 233444555566
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH----------
Q 003439 389 DMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL---------- 455 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll---------- 455 (820)
..|.+.|++++|...|+... ..+..+|..+...|...|++++|++.|+++.. ..|+.......+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDL 139 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TSTTTTTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHH
Confidence 66666677777766666543 33566777888888888888888888888877 344433322222
Q ss_pred ----H--HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCC
Q 003439 456 ----P--AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 529 (820)
Q Consensus 456 ----~--a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 529 (820)
. .+...|++++|..+++.+.+... .+..+ |..+...|...|+
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-------------------------------~~~la~~~~~~~~ 187 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQL-------------------------------HASLGVLYNLSNN 187 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHST-TCHHH-------------------------------HHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHH-------------------------------HHHHHHHHHHhcc
Confidence 1 14444555555555555544432 13344 4444444555555
Q ss_pred hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 003439 530 GDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 608 (820)
Q Consensus 530 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 608 (820)
+++|++.++++.+. .| +..++..+...+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.+
T Consensus 188 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 188 YDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 55555555555543 23 2345555555555566666666655555432 1123445555556666666666666655
Q ss_pred HhC-CCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 609 QNM-PVRPD-------------ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 609 ~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
+++ ...|+ ..+|..+..++...|+.++|...++++++..|
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 554 12222 44666666666777777777666665555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-13 Score=149.48 Aligned_cols=385 Identities=11% Similarity=-0.017 Sum_probs=201.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-ChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHH
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLE-----G--VSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 280 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 280 (820)
...||.|-..+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 456888888889999999999998876431 0 111 12344444444444555555544444433210
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhccCC----CCchHHHHHHHHHHh--CCChhhHHHHHHHHHHcCCCCCcc-hHHHHHH
Q 003439 281 VSNNLINMYAKFGMMRHALRVFDQMME----RDVVSWNSIIAAYEQ--SNDPITAHGFFTTMQQAGIQPDLL-TLVSLTS 353 (820)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~ 353 (820)
..... ....+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..
T Consensus 125 ----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 125 ----------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp ----------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred ----------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 00011 012233333333333 33466666666666553 34332 2222222
Q ss_pred H---HHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHh----cCCHHHHHHHHhcCC---CCCchHHHHHHHHHH
Q 003439 354 I---VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK----LGIINSACAVFEGLP---VKDVISWNTLITGYA 423 (820)
Q Consensus 354 a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 423 (820)
+ +...++.+.+.+.+..+++.. +.+..++..+...+.+ .|+.++|.+.++... ..+...|..+...|.
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 2 233445555666666655553 4444455444444433 456677777776543 345667888888888
Q ss_pred HcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 424 QNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 424 ~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
..|++++|+..|++..+ ..|+... +..+...+...+. . .... ............+..+.|
T Consensus 259 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~y~~~~~-----~----~~~~-------~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALE---YIPNNAYLHCQIGCCYRAKVF-----Q----VMNL-------RENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHH-----H----HHHC-------------CHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHH-----H----hhhH-------HHHHHHHHHHHHhhHHHH
Confidence 89999999999988877 5665433 2222222211100 0 0000 000011111122345677
Q ss_pred HHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHH-HHHhcCCHHHHHHHHHH
Q 003439 503 MSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----TFVSLLT-ACSHSGLVSEGQRYFHM 574 (820)
Q Consensus 503 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~-a~~~~g~~~~a~~~~~~ 574 (820)
...|++.. +.+...|..+...|...|++++|++.|++.++. .|+.. .+..+.. ...+.|+.++|++.|.+
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77776654 556677899999999999999999999999985 44432 2333332 34578999999999988
Q ss_pred hHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 575 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 575 m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.. .+.|+....... .+.+.+++++. ...| +..+|..|...+...|++++|++.|++++++.|.++.
T Consensus 398 al---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 398 GV---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HH---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HH---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 77 356665333222 23334444433 2233 5669999999999999999999999999999998887
Q ss_pred hHHhHH
Q 003439 653 YYVLMS 658 (820)
Q Consensus 653 ~~~~l~ 658 (820)
+..-++
T Consensus 466 a~~~~G 471 (472)
T 4g1t_A 466 ASSWNG 471 (472)
T ss_dssp ------
T ss_pred HhhcCC
Confidence 765554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=135.07 Aligned_cols=193 Identities=14% Similarity=0.064 Sum_probs=155.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHH
Q 003439 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSL 555 (820)
Q Consensus 480 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 555 (820)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3456677888888999999999999998765 45566788899999999999999999999999 46754 578888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003439 556 LTACSHS-----------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGA 622 (820)
Q Consensus 556 l~a~~~~-----------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ 622 (820)
..++... |++++|...++...+. .| +...+..+..+|...|++++|++.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 9999999999998853 55 4678889999999999999999999987 22267889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=137.35 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=154.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 492 (820)
..|..+...+...|++++|+..|++..+ .. ++...+..+...+...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM----------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----------
Confidence 3566666666777777777777776665 32 444444445555555555555555554444321100
Q ss_pred HHhcCCHHHHHHHHhhCCCCC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVPRSS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 568 (820)
.++ ...|..+...|...|++++|++.|+++.+ +.|+. ..+...|++++|
T Consensus 72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHH
Confidence 001 24455666677777777777777777777 34553 345566778888
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 569 QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
.+.++.+.. ..| +...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..++++++
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888877764 233 3466777888888888888888888876 223 3567888888889999999999999999999
Q ss_pred cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 646 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 646 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.|+++..+..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988888999999999999999999988887754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-13 Score=134.96 Aligned_cols=240 Identities=11% Similarity=-0.018 Sum_probs=171.8
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhHHH
Q 003439 380 DVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILP 456 (820)
Q Consensus 380 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~ 456 (820)
....+..+...|.+.|++++|...|+.... .+...|..+...|...|++++|+..|++..+ +.|+.. .+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~----- 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE---QGREMRADY----- 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCH-----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccccch-----
Confidence 356778899999999999999999976532 6788899999999999999999999999877 333220 00
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHH
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 536 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 536 (820)
.....++..+...|.+.|++++|...|++....+.. ...+...|++++|++.
T Consensus 76 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 76 -----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKK 127 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHH
Confidence 001223344444455555555555555444311100 2345566777788888
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 003439 537 FRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR 614 (820)
Q Consensus 537 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~ 614 (820)
++++.. ..|+. ..+..+...+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888777 45543 46777788888888888888888888754 2335677888888888899999998888876 333
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCcchHHhHHH
Q 003439 615 P-DASIWGALLGACRIHGNMELGAVASDRLFEVD------SENVGYYVLMSN 659 (820)
Q Consensus 615 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 659 (820)
| +..+|..+...+...|+.++|...+++++++. |++...+..|..
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 4 46688899999999999999999999999988 777666665554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-13 Score=135.15 Aligned_cols=175 Identities=12% Similarity=0.029 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSH 561 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 561 (820)
+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+. .|+. ..+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Confidence 3444444445555555555444433 223334455555555555555555555555442 3332 233333313333
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGH---LGMAHNFIQNM----PVRPD------ASIWGALLGAC 627 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~---~~eA~~~~~~m----~~~p~------~~~~~~ll~~~ 627 (820)
.+++++|.+.|+.+.+. .|+ ...+..+..++...|+ .++|...++++ ...|+ ..+|..+...|
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 34555555555555532 222 3444445555555554 44444444433 11122 24677788888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
...|++++|+..++++++++|+++.+...+..+....+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999999888887776655444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-13 Score=136.15 Aligned_cols=240 Identities=8% Similarity=-0.094 Sum_probs=184.6
Q ss_pred cCChHHHHHHHHhhhhcCCC-C-C-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 425 NGLASEAIEVFQMMEECNEI-N-P-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~-~-p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
.|++++|+..|+++.+ ... . | +..++..+...+...|++++|...+..+++... .+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 4677788888887776 321 1 1 345566677777788888888888888777643 357788888999999999999
Q ss_pred HHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 502 AMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 502 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
|.+.|++.. +.+...|..+...|...|++++|++.|+++.+ ..|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998776 45667789999999999999999999999998 4677766666666778889999999999887754
Q ss_pred hCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 579 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 579 ~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 4777888888999999999876 33332 468899999999999999999999999999997755
Q ss_pred hHHhHHHHhhhcCCcchHHHHH
Q 003439 653 YYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 56778888888887665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-11 Score=134.69 Aligned_cols=365 Identities=10% Similarity=0.022 Sum_probs=183.6
Q ss_pred CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCH---HHHHHHHhccCCCCchHHHHHHHHHHhCC-----Chhh
Q 003439 257 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM---RHALRVFDQMMERDVVSWNSIIAAYEQSN-----DPIT 328 (820)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-----~~~~ 328 (820)
.|++++|.+++....+.| +...+..|..+|...|+. ++|...|+...+.+...+..|...+...| ++++
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 344444444444444444 122223344445555666 77777777776666666777766555554 6678
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcC----CHHHHHHHH
Q 003439 329 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG----IINSACAVF 404 (820)
Q Consensus 329 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g----~~~~A~~~f 404 (820)
|+.+|++..+.|.. ..+..+-..+...+..+.+...+..+.+.. -..+......|..+|...+ ..+.+..++
T Consensus 93 A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~-~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 93 AESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQ-AAGYPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHH-HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 88888888776532 255555555555554444433333333222 1223444555555565555 333344444
Q ss_pred hcCCCCCchHHHHHHHHHHHcC---ChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC
Q 003439 405 EGLPVKDVISWNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 481 (820)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 481 (820)
+.....+..++..|...|.+.| +.++|++.|++..+ .|. +
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------------------------~g~-~ 211 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------------------------RGT-V 211 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------------TTC-S
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------------------------CCC-H
Confidence 4444444445555555555555 55555555555444 332 2
Q ss_pred chhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCCccccchHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 003439 482 DVFVATCLVDMYGKC----GRIDDAMSLFYQVPRSSSVPWNAIISC-H--GIHGQGDKALNFFRQMLDEGVRPDHITFVS 554 (820)
Q Consensus 482 ~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 554 (820)
+...+..|..+|... ++.++|.+.|++..+.+...+..|... | ...+++++|++.|++..+.| +...+..
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 222223444444333 466666666665553333445555554 3 34677888888888877765 5556666
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003439 555 LLTACSHSG-----LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLG 625 (820)
Q Consensus 555 ll~a~~~~g-----~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~ 625 (820)
|...|. .| ++++|.++|+... .-+...+..|..+|.. ..+.++|.+.|++.-...+......|..
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~ 362 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQ 362 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 666665 44 7888888886554 3345666667777765 3388888888877632334445555665
Q ss_pred HHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhh--hcCCcchHHHHHHH
Q 003439 626 ACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYA--NVGKWEGVDEVRSL 676 (820)
Q Consensus 626 ~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~A~~~~~~ 676 (820)
.|.. ..|.++|...++++.+..+.+ ....+..+.. ..++.++|.++.++
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5553 347788888888887766533 2333333322 22344455554444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-12 Score=127.09 Aligned_cols=195 Identities=9% Similarity=-0.051 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTA 558 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 558 (820)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 3455666667777777777777776654 344556777777788888888888888888774 34 45577777778
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 635 (820)
+...|++++|.++++.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887764 22445 3466777788888888888888888776 2233 46678888888888888888
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|...++++++..|++...+..++.+|...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-11 Score=122.86 Aligned_cols=223 Identities=12% Similarity=-0.022 Sum_probs=148.0
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
+..++..+...|...|++++|++.|++..+ .+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~--------------------------------------~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LK--------------------------------------ENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT--------------------------------------CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC--------------------------------------CHHHHHHHH
Confidence 445555666666666666666666666554 11 223333444
Q ss_pred HHHHh----cCCHHHHHHHHhhCC-CCCccccchHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003439 491 DMYGK----CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGI----HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561 (820)
Q Consensus 491 ~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 561 (820)
.+|.. .|++++|.+.|++.. ..+...|..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 44444 555555555555443 2234445555555555 677777777777777653 55666777777777
Q ss_pred ----cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 003439 562 ----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLGACRI---- 629 (820)
Q Consensus 562 ----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~---- 629 (820)
.+++++|.++|+...+. + +...+..+..+|.+ .+++++|.+.+++.-...+...+..+...+..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 77888888888777643 2 45566677777777 77888888888766222356677777888888
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHHHhCC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 681 (820)
.+++++|+..++++.+.+| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888888888888887765 6677788888888 888888888888887765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=122.08 Aligned_cols=196 Identities=14% Similarity=0.063 Sum_probs=148.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 557 (820)
+...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 34566667777777788888877777654 344556777778888888888888888888774 34 4557777778
Q ss_pred HHHhc-CCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 003439 558 ACSHS-GLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM 633 (820)
Q Consensus 558 a~~~~-g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 633 (820)
.+... |++++|.++++.+.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888775 223343 466777888888888888888888776 2333 466788888888888888
Q ss_pred hHHHHHHHHHhccCC-CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 634 ELGAVASDRLFEVDS-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++|...++++++..| ++...+..++.++...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888888888 88888888888888888888888888887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-12 Score=127.15 Aligned_cols=195 Identities=11% Similarity=0.086 Sum_probs=131.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 557 (820)
....+..+...+.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 34455556666677777777777776654 334555677777777788888888888887774 34 4557777777
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~ 635 (820)
.+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877754 2235567777788888888888888888776 222 356678888888888888888
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+..++++++..|+++..+..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-12 Score=126.01 Aligned_cols=179 Identities=10% Similarity=0.030 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 559 (820)
...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455556666666666666666666554 3345567777777888888888888888888753 33556778888888
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|+.++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999888754 2335678888899999999999999999876 223 35678999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
..+++++++.|++...+..++.+....
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 999999999999988887776655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-12 Score=135.97 Aligned_cols=243 Identities=9% Similarity=0.064 Sum_probs=185.3
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCC-hhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
...|+.+...+.+.|++++|++.|++... +.|+. ..|..+...+...|+ +++|...++.+++... .+...|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 34566777777778888888888888776 56654 345566666777775 8888888888777653 356778888
Q ss_pred HHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh-cCC
Q 003439 490 VDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSH-SGL 564 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~ 564 (820)
..+|.+.|++++|...|+++. ..+...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCc
Confidence 888888888888888888776 55667788888889999999999999999998 4564 4688888888888 566
Q ss_pred HHHH-----HHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC----
Q 003439 565 VSEG-----QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAG--HLGMAHNFIQNMPVRPD-ASIWGALLGACRIHG---- 631 (820)
Q Consensus 565 ~~~a-----~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g--~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g---- 631 (820)
.++| ++.++...+ +.| +...|..+..+|.+.| ++++|.+.++++...|+ ...+..|...|...|
T Consensus 251 ~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 477777764 355 4567888888888888 68899988888755554 558888888888764
Q ss_pred ----C-hhHHHHHHHHH-hccCCCCcchHHhHHHHhhh
Q 003439 632 ----N-MELGAVASDRL-FEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 632 ----~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 663 (820)
+ .++|+.+++++ .+++|.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58899999999 89999888888877765543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-11 Score=121.24 Aligned_cols=205 Identities=13% Similarity=0.047 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 491 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 491 (820)
...|..+...|...|++++|++.|+++.+ ..|+ +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~----------------------------------~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE---IDPS----------------------------------SADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH---HCTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCC----------------------------------hHHHHHHHHH
Confidence 45566666777777777777777777665 2222 2334455555
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 003439 492 MYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSE 567 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 567 (820)
.|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+..++...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 5555666666666655543 23444566666777777777777777777776434554 3467777888888899999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 568 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 568 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++
T Consensus 160 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 160 AKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99988888754 1234677888888999999999999998876 3334 566888888889999999999999999999
Q ss_pred cCCCCcchHH
Q 003439 646 VDSENVGYYV 655 (820)
Q Consensus 646 ~~p~~~~~~~ 655 (820)
+.|+++....
T Consensus 238 ~~p~~~~~~~ 247 (252)
T 2ho1_A 238 LYPGSLEYQE 247 (252)
T ss_dssp HCTTSHHHHH
T ss_pred HCCCCHHHHH
Confidence 9998776544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=140.17 Aligned_cols=260 Identities=12% Similarity=0.029 Sum_probs=170.8
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-----ccHhhHHHHhhccCChhHHHHHHHHHHHh----CC-CCchhHHH
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----CL-CFDVFVAT 487 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~ 487 (820)
+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|...++.+++. +. ......+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH---hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555555555555555554 22332 23444444455555555555555544332 11 11234556
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---------CccccchHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 003439 488 CLVDMYGKCGRIDDAMSLFYQVPRS---------SSVPWNAIISCHGIHGQ-----------------GDKALNFFRQML 541 (820)
Q Consensus 488 ~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 541 (820)
.+...|...|++++|...|++.... ....|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666677777777777766654311 12246667777777777 788888777765
Q ss_pred Hc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 542 DE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 542 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
+. +-.|. ..++..+...+...|++++|.++++...+...-.++ ...+..+..+|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11222 236777888889999999999999887653211122 237788889999999999999998776
Q ss_pred CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 612 PV---RPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 612 ~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
.. ..+ ..+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|...+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 111 4578888899999999999999999998875433 3477889999999999999999999887
Q ss_pred hC
Q 003439 679 DR 680 (820)
Q Consensus 679 ~~ 680 (820)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-12 Score=135.51 Aligned_cols=262 Identities=11% Similarity=0.071 Sum_probs=161.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-----ccHhhHHHHhhccCChhHHHHHHHHHHHh----CCCC-chhH
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----CLCF-DVFV 485 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~ 485 (820)
......+...|++++|+..|++..+ ..|+. ..+..+...+...|+++.|...+..+.+. +..+ ...+
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344444455555555555555544 12221 23334444445555555555555443321 1111 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----ccccchHHHHHHhcCC--------------------hHHHHHH
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQ--------------------GDKALNF 536 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 536 (820)
+..+...|...|++++|...|++... .+ ...|..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55566666666776666666655431 11 2246666667777777 7777777
Q ss_pred HHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHH
Q 003439 537 FRQMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 537 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
+++..+. +-.|. ..++..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|.+.
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7766542 11121 236677777888888888888888877643222222 23677788888888888888888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHH
Q 003439 608 IQNM----PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 608 ~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~ 673 (820)
+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8765 11112 4477788888888999999999998888765433 44677888899999999999988
Q ss_pred HHHHHhC
Q 003439 674 RSLARDR 680 (820)
Q Consensus 674 ~~~m~~~ 680 (820)
+++..+.
T Consensus 330 ~~~al~~ 336 (406)
T 3sf4_A 330 AEKHLEI 336 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=130.31 Aligned_cols=260 Identities=11% Similarity=0.056 Sum_probs=177.5
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-----ccHhhHHHHhhccCChhHHHHHHHHHHHh----CCC-CchhHHH
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----CLC-FDVFVAT 487 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~ 487 (820)
....+...|++++|+..|+++.+ ..|+. ..+..+...+...|+++.|.+.+..+.+. +.. ....++.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34445556666666666666655 23332 33444555556666666666665554332 111 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-----CCC----ccccchHHHHHHhcCC--------------------hHHHHHHHH
Q 003439 488 CLVDMYGKCGRIDDAMSLFYQVP-----RSS----SVPWNAIISCHGIHGQ--------------------GDKALNFFR 538 (820)
Q Consensus 488 ~li~~y~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~ 538 (820)
.+...|...|++++|...|++.. ..+ ...|..+...|...|+ +++|++.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 67777777888888777776654 112 2246677777788888 888888887
Q ss_pred HHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 539 QMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 539 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
+.... +-.|. ..++..+...+...|++++|.++++...+...-.++ ...+..+...|.+.|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 11222 236777888899999999999999887643211122 2377888899999999999999988
Q ss_pred hC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHHHH
Q 003439 610 NM----PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 610 ~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+. +..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76 11122 4578888899999999999999999998875533 3367789999999999999999999
Q ss_pred HHHhC
Q 003439 676 LARDR 680 (820)
Q Consensus 676 ~m~~~ 680 (820)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=131.66 Aligned_cols=224 Identities=11% Similarity=0.099 Sum_probs=189.3
Q ss_pred cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 450 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR-IDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 450 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
.+..+...+...|++++|.+.++.+++... .+..+++.+...|.+.|+ +++|+..|++.. +.+...|+.+..++.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 455566677888999999999999998763 367788999999999997 999999999876 566778999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHH-cCCHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGR-AGHLG 602 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~-~g~~~ 602 (820)
..|++++|+..|+++++ +.|+ ...|..+..++...|++++|++.++.+.+. .| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 5675 568999999999999999999999999854 45 56789999999999 67657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC--------
Q 003439 603 MA-----HNFIQNM-PVRP-DASIWGALLGACRIHG--NMELGAVASDRLFEVDSENVGYYVLMSNIYANVG-------- 665 (820)
Q Consensus 603 eA-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-------- 665 (820)
+| ++.+++. .+.| +...|..+...+...| ++++|+..++++ +.+|+++..+..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4677665 4455 4669999999999888 689999999998 999999999999999999975
Q ss_pred -CcchHHHHHHHH-HhC
Q 003439 666 -KWEGVDEVRSLA-RDR 680 (820)
Q Consensus 666 -~~~~A~~~~~~m-~~~ 680 (820)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258899999987 443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-11 Score=133.84 Aligned_cols=343 Identities=11% Similarity=0.037 Sum_probs=200.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcc---hhhhhHHHHHHHhCCcCcchhHHhHHHHHHH
Q 003439 316 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC---RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392 (820)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 392 (820)
+...+.+.|++++|+++|++..+.|- ...+..+-..+...|+. ++|...+....+. ++..+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 56667788889999999988877652 22333333444445555 6777777766532 4445555555444
Q ss_pred hcC-----CHHHHHHHHhcCCCC-CchHHHHHHHHHHHcCChHH---HHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC
Q 003439 393 KLG-----IINSACAVFEGLPVK-DVISWNTLITGYAQNGLASE---AIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463 (820)
Q Consensus 393 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~ 463 (820)
..| +.++|...|+...++ +...+..|...|...+..++ +.+.+..... .| +......+...+...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HT---CTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCC
Confidence 444 667777777665433 45566677777766554433 3334443333 22 23344455555556565
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCCC---CccccchHHHHHHhc----CChHHH
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG---RIDDAMSLFYQVPRS---SSVPWNAIISCHGIH----GQGDKA 533 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A 533 (820)
++.+........+.-...++..+..|..+|.+.| +.++|.+.|++.... +...+..|...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 5444444333333222234447777788888888 788888888766522 222235566666544 678888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC-----CHHHHH
Q 003439 534 LNFFRQMLDEGVRPDHITFVSLLTA-C--SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-----HLGMAH 605 (820)
Q Consensus 534 ~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-----~~~eA~ 605 (820)
++.|++.. .| +...+..|... + ...+++++|.++|+...+. | +...+..|..+|. .| ++++|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 88888876 22 34455555555 3 4577888888888877643 3 5566677777776 45 888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHH
Q 003439 606 NFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLA 677 (820)
Q Consensus 606 ~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m 677 (820)
+.|++.- ..+...+..|...|.. ..|.++|...++++.+ +.++.....|+.+|.. ..+.++|..++++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 8888877 5566677777766655 3378888888888766 3456777788888775 34777888888888
Q ss_pred HhCCC
Q 003439 678 RDRGL 682 (820)
Q Consensus 678 ~~~~~ 682 (820)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 77764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.4e-11 Score=119.99 Aligned_cols=230 Identities=8% Similarity=-0.102 Sum_probs=165.9
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC-CchHHHHHHHHHHH----cCChHHHHHHHHhhhhcCCCCCCcccHh
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQ----NGLASEAIEVFQMMEECNEINPNQGTYV 452 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 452 (820)
+.+...+..+...|.+.|++++|...|+...++ +..++..+...|.. .+++++|+..|++..+ .+ +...+.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHH
Confidence 345677888999999999999999999876644 56778888888888 8899999998888776 32 333444
Q ss_pred hHHHHhhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHh--
Q 003439 453 SILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI-- 526 (820)
Q Consensus 453 ~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 526 (820)
.+...+.. .+++++|.+.++...+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCC
Confidence 44444444 455555555555444432 33344455555555
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH---
Q 003439 527 --HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR--- 597 (820)
Q Consensus 527 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~--- 597 (820)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|.++|+...+. .+...+..+..+|.+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCC
Confidence 677777778888777754 45566677777777 88889999888887753 245677788888888
Q ss_pred -cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcc
Q 003439 598 -AGHLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 598 -~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+++++|.+.+++.-...+...+..+...|.. .++.++|+..++++.++.|+++.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999998876212336678888888888 89999999999999999885443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-11 Score=117.69 Aligned_cols=208 Identities=13% Similarity=0.035 Sum_probs=147.7
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
+...|..+...+...|++++|++.|+++.+ ..|+ +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~----------------------------------~~~~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK---SDPK----------------------------------NELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCcc----------------------------------chHHHHHHH
Confidence 445566666777777777777777776665 2232 233445555
Q ss_pred HHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 003439 491 DMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH-GQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLV 565 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 565 (820)
..|...|++++|.+.|+++. +.+...|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 55666666666666665543 33445566677777777 888888888888877333444 35677788888888999
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003439 566 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR--PDASIWGALLGACRIHGNMELGAVASDR 642 (820)
Q Consensus 566 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 642 (820)
++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.
T Consensus 130 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999988888754 1224677888888899999999999988876 223 3566777777888899999999999999
Q ss_pred HhccCCCCcchHHhH
Q 003439 643 LFEVDSENVGYYVLM 657 (820)
Q Consensus 643 ~~~~~p~~~~~~~~l 657 (820)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999887766554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-11 Score=116.03 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=131.4
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...+...... ...+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 44577777788888888888888888887 45654 57778888888888999888888887753 223455677777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
..+...+++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888999988888776 3334 4668888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003439 671 DEVRSLARDR 680 (820)
Q Consensus 671 ~~~~~~m~~~ 680 (820)
.+.++++.+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999888765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-12 Score=128.45 Aligned_cols=219 Identities=11% Similarity=-0.011 Sum_probs=181.0
Q ss_pred HhhccCChhHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCCh
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLC---FDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG 530 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 530 (820)
.....|++++|...++.+++.... .+..++..+...|...|++++|...|+++. +.+...|..+...|...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 345568899999999999886432 246788889999999999999999999876 45677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 531 DKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
++|++.|+++++. .| +..++..+...+...|++++|.++++.+.+. .|+..........+.+.|++++|.+.++
T Consensus 94 ~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999995 45 4678899999999999999999999999854 5665555556666778899999999997
Q ss_pred hC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 610 NM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 610 ~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
+. . .+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|...++++.+..
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 169 QHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 65 2 233444444 777778888889999999999988774 36788899999999999999999999998653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-11 Score=118.23 Aligned_cols=204 Identities=14% Similarity=0.059 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
+...|..+...+.+.|++++|+..|++..+ ..|+. ..+..+...+...|++++|...++.+++... .+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 344455555555566666666666665554 33432 2333333444444444444444444444321 123344444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 568 (820)
...|.+.+. .. .. .+...|++++|+..|++.++ +.|+ ...+..+..++...|++++|
T Consensus 80 g~~~~~~~~---------~~--~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 80 SEAYVALYR---------QA--ED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHH---------TC--SS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhh---------hh--hh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHH
Confidence 444443300 00 00 01122666666666666666 3454 34566666666677777777
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 569 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
++.|++..+. . .+...+..+..+|...|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++.
T Consensus 138 ~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777666654 3 55666666677777777777777776665 2333 3456666666677777777777666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=118.07 Aligned_cols=241 Identities=11% Similarity=0.018 Sum_probs=185.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc--cHhhHHHH
Q 003439 383 IGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG--TYVSILPA 457 (820)
Q Consensus 383 ~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~ll~a 457 (820)
+.......|.+.|++++|...|+... ..+...|..+...|.+.|++++|++.|++..+ .+..|+.. .+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 34455677788888898888888754 33566888899999999999999999999887 44223221 26778888
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHH
Q 003439 458 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKAL 534 (820)
Q Consensus 458 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 534 (820)
+...|++++|...+..+.+... .+..++..+...|.+.|++++|.+.|++... .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988753 3567889999999999999999999998873 34555777772344456999999
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHhHHhhCCCCCh------hHHHHHHHHHHHcCCHHHH
Q 003439 535 NFFRQMLDEGVRPD-HITFVSLLTACSHSGL---VSEGQRYFHMMQEEFGIKPHL------KHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 535 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~eA 604 (820)
+.|+++.+. .|+ ...+..+..++...|+ +++|...++...+...-.|+. ..|..+...|.+.|++++|
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999994 565 4577778888888888 888999999887654444552 5788899999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHH
Q 003439 605 HNFIQNM-PVRPD-ASIWGALLGAC 627 (820)
Q Consensus 605 ~~~~~~m-~~~p~-~~~~~~ll~~~ 627 (820)
.+.++++ ...|+ ...+..+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhh
Confidence 9999987 44554 44555554433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=133.82 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=108.2
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hh
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LK 586 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~ 586 (820)
.|..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 355566666677777777777776665210 112 126777777888888888888888877643211111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCcc
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM----PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDS------ENVG 652 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 652 (820)
.+..+...|.+.|++++|.+.+++. +..++ ..+|..+...+...|++++|...+++++++.+ ....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6778888889999999998888766 11122 45788888999999999999999999988633 3355
Q ss_pred hHHhHHHHhhhcCCcch
Q 003439 653 YYVLMSNIYANVGKWEG 669 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~ 669 (820)
.+..++.+|...|+...
T Consensus 349 ~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhHhHH
Confidence 67788899988887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=139.20 Aligned_cols=191 Identities=8% Similarity=-0.024 Sum_probs=159.5
Q ss_pred CchhHHHHHHHHHHhcCCH-HHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003439 481 FDVFVATCLVDMYGKCGRI-DDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 556 (820)
Q Consensus 481 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 556 (820)
.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666777777777777 77777777654 34456688888888888999999999999888 568877888888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC--
Q 003439 557 TACSHS---------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA--------GHLGMAHNFIQNM-PVRP-- 615 (820)
Q Consensus 557 ~a~~~~---------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~--------g~~~eA~~~~~~m-~~~p-- 615 (820)
.++... |++++|.+.+++..+. .| +...|..+..+|.+. |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 888888 9999999999988854 44 467888899999888 9999999999887 4455
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 616 --DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 616 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
+...|..+..+|...|++++|+..++++++++|+++..+..++.++...|++++|.+.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6779999999999999999999999999999999999999999999999999999875533
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=113.97 Aligned_cols=167 Identities=10% Similarity=-0.003 Sum_probs=142.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 557 (820)
+..+|..|...|.+.|++++|.+.|++.. +.+...|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56788889999999999999999998876 556777999999999999999999999999884 454 456777788
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 635 (820)
.+...++++.+.+.+...... .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 899999999999999988753 2335678889999999999999999999887 4455 56699999999999999999
Q ss_pred HHHHHHHHhccCCCCcc
Q 003439 636 GAVASDRLFEVDSENVG 652 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~ 652 (820)
|+..++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999997643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=137.70 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=132.0
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMV 592 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li 592 (820)
..|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3467777778888888888888888888 46754 5788888888888888888888888774 3554 57888888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
.+|.+.|++++|++.|++. .+.|+ ..+|+.+..++...|++++|+..++++++++|+++..+..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888999999999888876 45554 568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003439 671 DEVRSLARD 679 (820)
Q Consensus 671 ~~~~~~m~~ 679 (820)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=131.32 Aligned_cols=263 Identities=10% Similarity=0.036 Sum_probs=172.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CCc----hHHHHHHHHHHHcCChHHHHHHHHhhhhc---CCCCC-CcccHhhH
Q 003439 386 AVVDMYAKLGIINSACAVFEGLPV---KDV----ISWNTLITGYAQNGLASEAIEVFQMMEEC---NEINP-NQGTYVSI 454 (820)
Q Consensus 386 ~li~~y~~~g~~~~A~~~f~~~~~---~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~p-d~~t~~~l 454 (820)
.+...+...|++++|...|++... .+. ..|..+...|...|++++|+..|++.... .+-.| ....+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455555666666665554431 121 24555566666666666666666655431 01111 22344455
Q ss_pred HHHhhccCChhHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhhCCC-
Q 003439 455 LPAYSHVGALRQGIKIHARVIKN----C-LCFDVFVATCLVDMYGKCGR-----------------IDDAMSLFYQVPR- 511 (820)
Q Consensus 455 l~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~- 511 (820)
...+...|++++|...+..+.+. + ......++..+...|...|+ +++|.+.+++...
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55666666777766666655443 1 11124466677777888888 7777777765431
Q ss_pred ----C----CccccchHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 512 ----S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD----HITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 512 ----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
. ....|..+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|.++++...+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 1235777888888999999999999888763111 12 126778888999999999999999887653
Q ss_pred hCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 579 FGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV---RPD----ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 579 ~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
..-.. ....+..+..+|.+.|++++|.+.+++. .. .++ ..++..+...+...|++++|...+++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 21111 1467788899999999999999999876 11 112 347888889999999999999999999987
Q ss_pred CC
Q 003439 647 DS 648 (820)
Q Consensus 647 ~p 648 (820)
.+
T Consensus 373 ~~ 374 (411)
T 4a1s_A 373 AX 374 (411)
T ss_dssp CC
T ss_pred Hh
Confidence 66
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=113.70 Aligned_cols=217 Identities=11% Similarity=0.123 Sum_probs=147.3
Q ss_pred HHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhh-------ccCCh-------hHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 429 SEAIEVFQMMEECNEINPNQ-GTYVSILPAYS-------HVGAL-------RQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 429 ~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
++|+..|++... ..|+. ..|......+. +.|++ ++|..+++..++.-.+.+...+..++..+
T Consensus 33 ~~a~~~~~~al~---~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 567777777766 34433 23434443332 34665 77777777777631223556777788888
Q ss_pred HhcCCHHHHHHHHhhCCC--C-Ccc-ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH-hcCCHHH
Q 003439 494 GKCGRIDDAMSLFYQVPR--S-SSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACS-HSGLVSE 567 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~-~~g~~~~ 567 (820)
.+.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++.++. .|+ ...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888877652 2 233 6778888888888888888888888874 343 334443333322 3688888
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 003439 568 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P---VRP--DASIWGALLGACRIHGNMELGAVASD 641 (820)
Q Consensus 568 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 641 (820)
|.++|+...+..+ -+...|..+++.+.+.|++++|..+|++. . +.| ....|..++.....+|+.+.|..+++
T Consensus 188 A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888775432 24567788888888888888888888876 2 244 35588888888888888888888888
Q ss_pred HHhccCCCCcc
Q 003439 642 RLFEVDSENVG 652 (820)
Q Consensus 642 ~~~~~~p~~~~ 652 (820)
++++..|++..
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 88888887553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-08 Score=113.35 Aligned_cols=412 Identities=10% Similarity=0.014 Sum_probs=266.7
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCC---hHHHHHHHHHHHHhC-CCccHHHH
Q 003439 207 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN---ILSGLLIHLYIVKHG-LEFNLFVS 282 (820)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 282 (820)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|+..+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999999999999999999999875 33445556666666677777 889999999888765 24677788
Q ss_pred HHHHHHHHccCCH--------HHHHHHHhccC------CC-CchHHHHHHHHHHh---------CCChhhHHHHHHHHHH
Q 003439 283 NNLINMYAKFGMM--------RHALRVFDQMM------ER-DVVSWNSIIAAYEQ---------SNDPITAHGFFTTMQQ 338 (820)
Q Consensus 283 ~~li~~y~~~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 338 (820)
...+....+.++. +...++|+... .+ +...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766555543 23446666532 22 33567777765432 3345667778877764
Q ss_pred cCCCCCcchHHHHHHHHHhcC---cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc-------CC
Q 003439 339 AGIQPDLLTLVSLTSIVAQLN---DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG-------LP 408 (820)
Q Consensus 339 ~g~~pd~~t~~~ll~a~~~~~---~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~ 408 (820)
+ |-.. +..+-..|.... +...++.+.... ...++.|...+.+ +.
T Consensus 223 --i-P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e~----------------------~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 223 --Q-PMDC-LESMWQRYTQWEQDVNQLTARRHIGEL----------------------SAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp --S-CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHHH----------------------HHHHHHHHHHHHHHHHHTTTCC
T ss_pred --C-ccHH-HHHHHHHHHHHHHhcCcchHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHhHh
Confidence 2 3211 111211111110 111111111110 0112222222221 11
Q ss_pred C--------------C--C------chHHHHHHHHHHHcC-------ChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHh
Q 003439 409 V--------------K--D------VISWNTLITGYAQNG-------LASEAIEVFQMMEECNEINP-NQGTYVSILPAY 458 (820)
Q Consensus 409 ~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~ 458 (820)
. | + ...|...+.---.++ ..+.+..+|++... ..| +...+.....-+
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~---~~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ---HVCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHH
Confidence 0 0 0 134555554333332 12345667887776 233 344555555566
Q ss_pred hccCChhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC-----------
Q 003439 459 SHVGALRQGI-KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-------------SS----------- 513 (820)
Q Consensus 459 ~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~----------- 513 (820)
...|+.+.|. ++++..+... +.+...+-..+...-+.|+++.|.++|+++.. |.
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 7778888996 9999998754 44667778889999999999999999988763 21
Q ss_pred -ccccchHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 514 -SVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHS-GLVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 514 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+. ++.+.|.++|+...+.++ -+...+..
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~ 509 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHH
Confidence 224888888888899999999999999885 2 11233343332222233 558999999999987643 34556778
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRP----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 889889999999999999987 3333 2358999999999999999999999999999997654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=121.69 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=87.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~ 587 (820)
|..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|.++++...+...-.++ ...
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 44555556666666666666666554210 011 126667777788888888888888776543211111 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PV---RPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+..+...|.+.|++++|.+.+++. .. .++ ..+|..+...+...|++++|...+++++++.+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777888888888888888888765 11 112 347778888899999999999999999887763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-11 Score=124.96 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcC------CCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHh------CC-
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECN------EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN------CL- 479 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~- 479 (820)
.+|..+...|...|++++|+.+|+++.+.. ........+..+...+...|++++|...+..+++. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345555555666666666666666554400 01111223333444444445555555444444332 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 003439 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTA 558 (820)
Q Consensus 480 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 558 (820)
.....++..+...|...|++++|.+.|++... ++++... +-.|+ ...+..+...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~-~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG-KDHPDVAKQLNNLALL 162 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC-CCChHHHHHHHHHHHH
Confidence 11234455555556666666666555543321 1100000 11121 1234444555
Q ss_pred HHhcCCHHHHHHHHHHhHHhh-----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC------
Q 003439 559 CSHSGLVSEGQRYFHMMQEEF-----GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP----------VRPD------ 616 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~----------~~p~------ 616 (820)
+...|++++|.++++.+.+.. +..| ....+..+..+|.+.|++++|.+.++++- ..+.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 555555555555555544321 0011 12344555555555555555555554431 0111
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 617 -ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 617 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+..+...+...+.+.++...++++....|.....+..++.+|...|++++|.+++++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222223334455666666777777777777777777888888888888888888777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-10 Score=126.38 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=150.2
Q ss_pred HhhccCChhHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCC----C-CC-----ccccchHH
Q 003439 457 AYSHVGALRQGIKIHARVIKN----CLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVP----R-SS-----SVPWNAII 521 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~-~~-----~~~~~~li 521 (820)
.+...|++++|...+..+.+. +-.+ ...++..+...|...|++++|...+++.. . ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 445566677777766666553 1111 23466677777777777777777766544 1 11 23467777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCC-ChhHHHHHH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVR-PDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKP-HLKHYGCMV 592 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p-~~~~~~~li 592 (820)
..|...|++++|++.|++.++.... ++. .++..+...+...|++++|.+.++...+.. +..| ...++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 8888888888888888887753111 121 367778888888899999998888776421 2213 345678888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PV-----RPD-ASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
..|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ .++|+..+++. ...|.....+..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 8888999999998888775 11 222 2235667777777888 77777777776 344445567778999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 003439 663 NVGKWEGVDEVRSLARD 679 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~ 679 (820)
..|++++|...+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999888765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=126.88 Aligned_cols=177 Identities=11% Similarity=-0.009 Sum_probs=155.5
Q ss_pred HHHHHHHHhhCC---CCCccccchHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003439 499 IDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG-DKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFH 573 (820)
Q Consensus 499 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 573 (820)
++++.+.+++.. ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566665443 34566788899999999999 9999999999994 565 5689999999999999999999999
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChh
Q 003439 574 MMQEEFGIKPHLKHYGCMVDLFGRA---------GHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH--------GNME 634 (820)
Q Consensus 574 ~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~~ 634 (820)
... .+.|+...+..+..+|... |++++|.+.+++. ...| +...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 988 5678888999999999999 9999999999987 3445 567999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 635 LGAVASDRLFEVDS---ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+|+..++++++++| +++..+..++.+|...|++++|.+.++++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999998875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-08 Score=114.09 Aligned_cols=435 Identities=9% Similarity=-0.018 Sum_probs=269.7
Q ss_pred ChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC---HHHHHH
Q 003439 224 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM---MRHALR 300 (820)
Q Consensus 224 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~ 300 (820)
...+.+..|++....+ +-|..+|..++..+.+.+.++.++.+++.+++. ++.....|...+..-.+.|. .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555556655543 347788888888888888899999999998877 35567788888888888888 889999
Q ss_pred HHhccCC-----CCchHHHHHHHHHHhCCCh----hh----HHHHHHHHHH-cCC-CCCc-chHHHHHHHHH--------
Q 003439 301 VFDQMME-----RDVVSWNSIIAAYEQSNDP----IT----AHGFFTTMQQ-AGI-QPDL-LTLVSLTSIVA-------- 356 (820)
Q Consensus 301 ~f~~m~~-----~d~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~pd~-~t~~~ll~a~~-------- 356 (820)
+|++... +++..|..-+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+.-..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9987644 5667787776655554433 22 3356655443 355 4543 33333333222
Q ss_pred -hcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 003439 357 -QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 435 (820)
Q Consensus 357 -~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 435 (820)
..+..+.++.++..++... ...-..+|......-...+. ..+.++ +.- ...+++.|...+
T Consensus 205 eeq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~-~~a~~~---------------~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQ-LTARRH---------------IGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCT-TTHHHH---------------HHH--HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCc-chHHHH---------------HHH--hhHHHHHHHHHH
Confidence 1223455556666555321 11111222111111000000 001111 110 112334444444
Q ss_pred Hhhhhc-CCC---CCCc--------------------ccHhhHHHHhhccC-------ChhHHHHHHHHHHHhCCCCchh
Q 003439 436 QMMEEC-NEI---NPNQ--------------------GTYVSILPAYSHVG-------ALRQGIKIHARVIKNCLCFDVF 484 (820)
Q Consensus 436 ~~m~~~-~g~---~pd~--------------------~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~~g~~~~~~ 484 (820)
.++... .++ -|.. ..|...+.---..+ ..+....+|+.++... +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 443210 011 1110 01111121111111 1233456787777653 34677
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC---
Q 003439 485 VATCLVDMYGKCGRIDDAM-SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV---------RPD--- 548 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~--- 548 (820)
+|-..+..+.+.|+.++|. ++|++.. +.+...|-..+....+.|++++|.++|+++++... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 7888888888899999996 9998776 34555578888888999999999999999987410 142
Q ss_pred ---------hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCC
Q 003439 549 ---------HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-HLGMAHNFIQNM--PVRPD 616 (820)
Q Consensus 549 ---------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~m--~~~p~ 616 (820)
...|...+....+.|..+.|..+|....+.. -.+....|...+.+-.+.| +.+.|.++|+.. ....+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 2357777888888999999999999988541 1122344544444445555 589999999876 23346
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSE---NVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...|...+.-....|+.+.|+.+|++++...|+ ....+......-.+.|+.+.+.++.+++.+.-
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 678889998888999999999999999998873 44567778888889999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=114.29 Aligned_cols=211 Identities=9% Similarity=0.023 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC----CCccccchHHHHHHh
Q 003439 465 RQGIKIHARVIKNCLCFDVFVATCLVDMYG-------KCGRI-------DDAMSLFYQVPR----SSSVPWNAIISCHGI 526 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 526 (820)
++|..+++.+++.. +.+...|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888753 346677777777765 45886 899999987653 345579999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHH-HcCCHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFG-RAGHLG 602 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~-~~g~~~ 602 (820)
.|++++|.++|++.++ +.|+.. .|..+...+.+.|++++|..+|+...+ ..| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 677643 788999999999999999999999884 334 3445544444422 369999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC-CcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 603 MAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEV---DSE-NVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 603 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
+|.++|++. ...| +...|..++..+...|+.++|+.+|+++++. .|+ ....+..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 2334 5679999999999999999999999999985 553 566888899999999999999999999
Q ss_pred HHhCC
Q 003439 677 ARDRG 681 (820)
Q Consensus 677 m~~~~ 681 (820)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.8e-10 Score=108.90 Aligned_cols=203 Identities=6% Similarity=-0.003 Sum_probs=120.6
Q ss_pred cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHH
Q 003439 448 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCH 524 (820)
Q Consensus 448 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 524 (820)
...+......+...|++++|...+..+++....++...+..+...|.+.|++++|.+.|++.. +.+...|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 345555556666777777777777777666543455555556666777777777777666554 23344566666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHH
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPDH--------ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVD 593 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~ 593 (820)
...|++++|++.|++.++. .|+. ..|..+...+...|++++|.+.|+... .+.|+ ...+..+..
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHH
Confidence 6777777777777766663 4432 234555556666666677776666655 34454 345555555
Q ss_pred HHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 594 LFGRAGHL--GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 594 ~~~~~g~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
+|...|+. ++|..+. ..+...+..+. ....+.+++|+..++++++++|++......+..+..
T Consensus 162 ~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 55544432 2221111 11222232222 233455689999999999999998887777766543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-09 Score=115.90 Aligned_cols=198 Identities=10% Similarity=0.093 Sum_probs=138.6
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCC------CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCc----c
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCL------CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-----RSSS----V 515 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~----~ 515 (820)
+..+...+...|+++.|...+..+.+.-. .....+++.+...|...|++++|.+.|++.. ..+. .
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33444444555555555555544433210 0113456667777788888888887776654 1111 2
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC---CCCChhH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFG---IKPHLKH 587 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g---~~p~~~~ 587 (820)
+|+.+...|...|++++|++.|++..+. +..|+ ..++..+...+...|++++|.++++...+... -......
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777888888999999999999888772 23244 35788889999999999999999998764321 1112234
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 588 YGCMVDLFGRAGH---LGMAHNFIQNMPVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 588 ~~~li~~~~~~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
+..+...|...|+ +++|..++++.+..|+.. ++..+...|...|++++|...+++++++..
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5678888889999 999999999986555543 778899999999999999999999987554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.7e-10 Score=105.50 Aligned_cols=160 Identities=13% Similarity=-0.026 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 559 (820)
..+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++.++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 3455556666666666666666666552 23334555555555555555555555555553 22 233444444455
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
...|++++|.++++.+.+. .+.+...|..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555555555544432 112344555555555556666666666
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665665555566666666666666666666555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=9e-10 Score=109.19 Aligned_cols=187 Identities=12% Similarity=-0.030 Sum_probs=92.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---R-SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLL 556 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 556 (820)
++..+..+...|.+.|++++|...|++.. + ++...|..+..+|...|++++|++.|++.++ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 33445555555555566665555555443 1 3444444455555555555555555555555 34433 3455555
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhhCCCCC-h-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--H-HHHHHHH
Q 003439 557 TACSHSGLVSEGQRYFHMMQEEFGIKPH-L-------KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD--A-SIWGALL 624 (820)
Q Consensus 557 ~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~-------~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~--~-~~~~~ll 624 (820)
.++...|++++|.+.++...+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ . ..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5555555555555555555432 222 1 23444445555555555555555544 33443 2 2444444
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+... +...++++..+.+.+...|..+ .....|.+++|...+++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 444322 2333444444444333322221 223334458888888887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-09 Score=101.78 Aligned_cols=169 Identities=17% Similarity=0.082 Sum_probs=130.2
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++. +.+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566777889999999999999887654 3467888999999999999999999999875 456677888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 605 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 605 (820)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++.+.+. .|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~---------------------- 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP---------------------- 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------------------
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc----------------------
Confidence 9999999999999999852 334557777777788888888888887776643 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 606 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 606 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
.+..+|..+...+...|++++|...+++++++.|++...
T Consensus 142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 234456666667777777777777777777777765543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-08 Score=108.86 Aligned_cols=258 Identities=12% Similarity=0.062 Sum_probs=162.3
Q ss_pred HHHHcCChHHHHHHHHhhhhcCCCCCCc-c----cHhhHHHHhhccCChhHHHHHHHHHHHhCCC-Cc----hhHHHHHH
Q 003439 421 GYAQNGLASEAIEVFQMMEECNEINPNQ-G----TYVSILPAYSHVGALRQGIKIHARVIKNCLC-FD----VFVATCLV 490 (820)
Q Consensus 421 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~----~~~~~~li 490 (820)
.+...|++++|...+++... .. .++. . .+..+...+...|+++.|.+.+....+.... .+ ...+..+.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALE-EL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-TC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH-cC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445566666666655544 11 1111 1 2233334455556666666665555432100 11 22345566
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-----CC------ccccchHHHHHHhcCChHHHHHHHHHHHHcCCC--C-C-hhHHHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPR-----SS------SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR--P-D-HITFVSL 555 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~-----~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~-~~t~~~l 555 (820)
..|...|++++|...+++... .+ ...+..+...|...|++++|...+++..+.... | . ..++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 677778888888777765541 11 123555677788888889998888888774321 1 1 2356677
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----HHHHHHHH
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG-----CMVDLFGRAGHLGMAHNFIQNMP-VRPD-----ASIWGALL 624 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll 624 (820)
...+...|++++|..+++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7788899999999999988765422111111121 23455778999999999998872 2221 23567778
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+...|++++|...++++++..+.. ...+..++.+|...|+.++|...++...+.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88889999999999999887754321 236667889999999999999998887653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=119.77 Aligned_cols=241 Identities=11% Similarity=0.083 Sum_probs=146.4
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC--------C---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcC----
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--------K---DVISWNTLITGYAQNGLASEAIEVFQMMEECN---- 442 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---- 442 (820)
+.+..++..+...|...|++++|...|++..+ . ...+|..+...|...|++++|+..|++.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33456677788888888888888888876543 1 24567778888888999999999888876611
Q ss_pred -CCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 003439 443 -EINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKN------CLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 513 (820)
Q Consensus 443 -g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 513 (820)
+-.| ...++..+...+...|++++|...+..+.+. +..| ....+..+...|.+.|
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------------- 167 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG---------------- 167 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC----------------
Confidence 1223 3456677778888999999999998887664 1111 2233444444444444
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHc------CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh------C
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDE------GVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEF------G 580 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------g 580 (820)
++++|++.|+++.+. +-.|+. .++..+...+...|++++|.++++.+.+.. .
T Consensus 168 ---------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 168 ---------------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455555555544442 112322 356667777777888888888777766421 1
Q ss_pred CCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 581 IKPHL-------KHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 581 ~~p~~-------~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
..+.. ..+..+...+...+.+.+|...++... ..|+ ..+|..+...|...|++++|...+++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11111 122223334445556666666666653 3343 458899999999999999999999999998874
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.5e-08 Score=103.97 Aligned_cols=30 Identities=10% Similarity=-0.089 Sum_probs=21.9
Q ss_pred CccHHHHHHHHHHH--HccCCHHHHHHHHhcc
Q 003439 276 EFNLFVSNNLINMY--AKFGMMRHALRVFDQM 305 (820)
Q Consensus 276 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~m 305 (820)
.|+..+.+.|-+.| .+.+++++|.++++++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i 38 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEV 38 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 45666777777777 6778888888777765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-09 Score=113.21 Aligned_cols=222 Identities=10% Similarity=-0.019 Sum_probs=155.1
Q ss_pred HhhccCChhHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHhhCC----C-CC-----ccccchHH
Q 003439 457 AYSHVGALRQGIKIHARVIKNCL-CF----DVFVATCLVDMYGKCGRIDDAMSLFYQVP----R-SS-----SVPWNAII 521 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~-~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~-~~-----~~~~~~li 521 (820)
.+...|+++.|...+..+.+... .+ ...++..+...|...|+++.|...+++.. . .+ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34567778888877777765311 11 23466777788888888888877776554 1 11 23477788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCCChhHHHHHHH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVD 593 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~~~~li~ 593 (820)
..|...|++++|++.|++.++..- .++ ..++..+...+...|++++|.+.++...+.. +.+.....+..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 888889999999998888776310 112 2367778888999999999999998877521 22223567788889
Q ss_pred HHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 594 LFGRAGHLGMAHNFIQNM----PV--RPD-ASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
.|.+.|++++|.+.+++. +. .|. ...+..+...+...|+ +++|+..+++. ...|+....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 999999999999998876 11 233 2355556666667777 77777777762 2334445567789999999
Q ss_pred cCCcchHHHHHHHHHh
Q 003439 664 VGKWEGVDEVRSLARD 679 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~ 679 (820)
.|++++|...++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999888754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=110.37 Aligned_cols=186 Identities=8% Similarity=-0.030 Sum_probs=123.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----CC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHH
Q 003439 492 MYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD----HITFVSLLT 557 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~ 557 (820)
.|...|++++|.+.|++... .+ ..+|+.+...|...|++++|+..|++.++.... .+ ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666654431 11 234667777777778888888877777652110 11 246778888
Q ss_pred HHHhc-CCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---H-----HHHHHH
Q 003439 558 ACSHS-GLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---A-----SIWGAL 623 (820)
Q Consensus 558 a~~~~-g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~-----~~~~~l 623 (820)
+|... |++++|++.|++..+...-..+ ..++..+...|.+.|++++|.+.+++. ...|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 89986 9999999999988753211111 356888899999999999999999886 22332 1 156778
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcch-----HHhHHHHhh--hcCCcchHHHHHHHH
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGY-----YVLMSNIYA--NVGKWEGVDEVRSLA 677 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~A~~~~~~m 677 (820)
...+...|++++|+..++++++++|+.... +..++..|. ..+++++|...++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 888999999999999999999999976553 334555554 456677777766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=125.43 Aligned_cols=163 Identities=12% Similarity=0.187 Sum_probs=141.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 557 (820)
+...++.|...|.+.|++++|++.|++.. +.+...|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45678888899999999999999998765 45567799999999999999999999999999 57764 58999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNME 634 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 634 (820)
++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. .+.|+ ...|..|...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999885 355 4678999999999999999999999987 55665 569999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 003439 635 LGAVASDRLFEVDSE 649 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~ 649 (820)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=109.22 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=157.7
Q ss_pred hccCChhHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CccccchH
Q 003439 459 SHVGALRQGIKIHARVIKN-------CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-------S----SSVPWNAI 520 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 520 (820)
...|+++.|..+++..++. ..+....++..+...|...|++++|...|++... + ....|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 2223466788899999999999999999987651 1 23458889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh-----CCCC-ChhH
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDE------GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF-----GIKP-HLKH 587 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~ 587 (820)
...|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|.++++.+.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11233 3478888889999999999999999887531 1122 3467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCh------hHHHHHHHHHhccCCCC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNMP----------VRPD-ASIWGALLGACRIHGNM------ELGAVASDRLFEVDSEN 650 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m~----------~~p~-~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~ 650 (820)
+..+..+|.+.|++++|.+.++++- ..+. ...|..+.......+.. ..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998661 1232 23455444444443333 33333333333445666
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...+..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678889999999999999999999987653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=102.54 Aligned_cols=202 Identities=9% Similarity=-0.021 Sum_probs=125.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPR--S-S---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HIT 551 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t 551 (820)
+...+-.+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++.++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 344455555666666777777666666552 1 2 233555666666666666666666666663 232 123
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003439 552 FVSLLTACSH--------SGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 622 (820)
Q Consensus 552 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 622 (820)
+..+..++.. .|++++|...|+.+.+.+ |+. .....+..+....+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4445555555 666666666666665432 321 1111111111000000 112456
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc---chHHhHHHHhhhc----------CCcchHHHHHHHHHhCCCCcCCcee
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANV----------GKWEGVDEVRSLARDRGLKKTPGWS 689 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s 689 (820)
+...+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-------- 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-------- 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--------
Confidence 78889999999999999999999999854 4788899999877 88999999999988652
Q ss_pred EEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHh
Q 003439 690 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 726 (820)
Q Consensus 690 ~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 726 (820)
+.+|...+....+.++...+.+
T Consensus 226 ---------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ---------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHHHHHHHHHH
Confidence 1255556667777777666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-08 Score=102.00 Aligned_cols=220 Identities=11% Similarity=0.016 Sum_probs=134.3
Q ss_pred CHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhc---CCCCCC-cccHhhHHHHhhccCChhHHHHHH
Q 003439 396 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC---NEINPN-QGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
++++|...|+. ....|...|++++|++.|++.... .|-.++ ..+|..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46777766544 366677778888888777766541 011111 223444444444444444444444
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhc-CChHHHHHHHHHHHHcCCCCC--
Q 003439 472 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH-GQGDKALNFFRQMLDEGVRPD-- 548 (820)
Q Consensus 472 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-- 548 (820)
+..++. +.+.|+...+ ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 433321 1111222211 22466777788885 8888888888888773 221
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 003439 549 -----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-----KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA 617 (820)
Q Consensus 549 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~ 617 (820)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..+|...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2467788889999999999999999887542111121 15677888899999999999999887 445542
Q ss_pred H------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCcchH
Q 003439 618 S------IWGALLGACR--IHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 618 ~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
. .+..++.++. ..+++++|+..|+++..++|.+...+
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2 3445566664 34678889999988888888654433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-09 Score=97.84 Aligned_cols=141 Identities=9% Similarity=-0.012 Sum_probs=107.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 598 (820)
...+...|++++|++.+++... ..|+ ...+..+...|...|++++|++.|+...+. .| +...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3445566777888887777655 3443 345667777888888888888888887743 44 467788888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 599 GHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVA-SDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
|++++|...|++. .+.|+ ..+|..+...+...|+.++|.+. ++++++++|+++..|.....++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888876 45564 66899999999999998776655 699999999999999999998888775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-07 Score=98.11 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=71.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCC-------CC----CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCC-CCCC--ccc
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLP-------VK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPN--QGT 450 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~pd--~~t 450 (820)
+.+...|...|++++|...+++.. .+ ....+..+...+...|++++|...+++...... ..|. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 445555566666666665554332 11 112344455566666667776666666544110 0010 122
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHhhCCCCCcc-------cc
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFVAT----CLVDMYGKCGRIDDAMSLFYQVPRSSSV-------PW 517 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~----~li~~y~~~g~~~~A~~~~~~~~~~~~~-------~~ 517 (820)
+..+...+...|++++|...++...+....++ ..... ..+..+...|++++|...+++....+.. .+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 33344445555666666666555543311111 11111 1223355556666666666555432211 12
Q ss_pred chHHHHHHhcCChHHHHHHHHHHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQML 541 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~ 541 (820)
..+...+...|++++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233444444555555555554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-07 Score=93.72 Aligned_cols=174 Identities=9% Similarity=0.014 Sum_probs=129.0
Q ss_pred HHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 502 AMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 502 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
|...|++... ++...+..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6667776652 3444456777888889999999999998877553233 34777788899999999999999999874
Q ss_pred hhCCCC-----ChhHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-
Q 003439 578 EFGIKP-----HLKHYGCMVDL--FGRAG--HLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEV- 646 (820)
Q Consensus 578 ~~g~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 646 (820)
. .| +..+...|..+ ....| +.++|..+|+++ ...|+..+-..|++++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 24445555544 33334 899999999998 33465333344555888999999999999988776
Q ss_pred ---------CCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 647 ---------DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 647 ---------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+|+++.++..++.++...|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 58888888888878888886 889999998875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-08 Score=102.35 Aligned_cols=163 Identities=9% Similarity=-0.058 Sum_probs=128.9
Q ss_pred CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 003439 511 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 589 (820)
Q Consensus 511 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 589 (820)
+.+...+..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|.+.++.+.. ..|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHH
Confidence 33444455667777888999999999999988 46754 5788888899999999999999988763 356544333
Q ss_pred HHH-HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchHHhHHHHhhhc
Q 003439 590 CMV-DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN--VGYYVLMSNIYANV 664 (820)
Q Consensus 590 ~li-~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~ 664 (820)
... ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+..|+.+|...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 322 3366777888888888776 3345 56699999999999999999999999999999988 78899999999999
Q ss_pred CCcchHHHHHHHHH
Q 003439 665 GKWEGVDEVRSLAR 678 (820)
Q Consensus 665 g~~~~A~~~~~~m~ 678 (820)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-08 Score=99.91 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=142.1
Q ss_pred cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---ccccch
Q 003439 448 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVPR--S-S---SVPWNA 519 (820)
Q Consensus 448 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~ 519 (820)
...+......+.+.|++++|...++.+++..... ....+..+...|.+.|++++|...|++... | + ...|..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3455566677889999999999999998865322 156778889999999999999999998762 2 2 234667
Q ss_pred HHHHHHh--------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 520 IISCHGI--------HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 520 li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
+..++.. .|++++|+..|++.++. .|+.. ....+. .+...... ....+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 7788888 99999999999999984 56543 222211 11111110 0112456
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCcch--
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIH----------GNMELGAVASDRLFEVDSENVGY-- 653 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~-- 653 (820)
+...|.+.|++++|...|+++ ...|+ ...|..+..++... |++++|+..++++++..|+++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 778888899999999888876 22333 34677777777765 88899999999999999988643
Q ss_pred -HHhHHHHhhhcCCcch
Q 003439 654 -YVLMSNIYANVGKWEG 669 (820)
Q Consensus 654 -~~~l~~~y~~~g~~~~ 669 (820)
...+..++...|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 3455555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=8.2e-08 Score=94.73 Aligned_cols=179 Identities=9% Similarity=-0.035 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc----cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVPR--SSS----VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----TFV 553 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 553 (820)
..+..+...+.+.|++++|...|+++.. |+. ..+..+..+|.+.|++++|+..|++.++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444455666777777777777776652 221 23556667777777777777777777763 44432 333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 003439 554 SLLTACSH------------------SGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVR 614 (820)
Q Consensus 554 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~ 614 (820)
.+..++.. .|++++|...|+.+.+. .|+.. .+.++. +.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATK----RLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHHHHHHHH---------
Confidence 33334433 34455555555555422 23211 111110 000000000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---chHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 615 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 615 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678899999999999999999999876 5688899999999999999999999887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-08 Score=99.59 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CccccchHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPR-------S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDE------GV 545 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 545 (820)
..++..+...|...|++++|.+.|++... + ....|..+...|...|++++|++.|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555566666666666666666655431 1 1234666777777888888888888877764 11
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh------CCCCC-hhHHHHHHHHHHHc------CCHHHHHHHHHhC
Q 003439 546 RPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF------GIKPH-LKHYGCMVDLFGRA------GHLGMAHNFIQNM 611 (820)
Q Consensus 546 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------g~~p~-~~~~~~li~~~~~~------g~~~eA~~~~~~m 611 (820)
.|+ ..++..+...+...|++++|.++++...+.. ...+. ...+..+...+... ..+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3477788889999999999999998877531 11222 23333333333332 2355555556555
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 612 P-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 612 ~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
. ..|+ ..+|..+...|...|++++|...+++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3 2233 3488889999999999999999999988753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-08 Score=85.82 Aligned_cols=128 Identities=18% Similarity=0.255 Sum_probs=69.1
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 596 (820)
|..+...|...|++++|+.+|+++.+.+ +.+..++..+...+...|++++|..+++.+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------ 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 3444555555555555555555555432 112334444444455555555555555444422
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 597 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
.+.+...|..+...+...|++++|...++++++..|++...+..++.+|...|++++|...+++
T Consensus 65 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 65 ----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 1123445555555566666666666666666666666666666666666666666666666666
Q ss_pred HHh
Q 003439 677 ARD 679 (820)
Q Consensus 677 m~~ 679 (820)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=93.69 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=101.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
|...+...|++++|++.++... ...|+ ...+-.+..+|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445566788999999887665 34443 345667899999999999999999987 4556 5669999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHH-HHHHHhC
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV-RSLARDR 680 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~~ 680 (820)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987765 5777654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=84.18 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 561 (820)
.+..+...|...|++++|..+|+++. +.+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56778899999999999999999875 4566778889999999999999999999999853 3345577778888888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
.|++++|.++++.+.+. .+.+...+..++..|.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888877643 112233444444444444444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=118.70 Aligned_cols=168 Identities=11% Similarity=-0.066 Sum_probs=118.3
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh
Q 003439 494 GKCGRIDDAMSLFYQVP-----------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSH 561 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 561 (820)
...|++++|.+.|++.. +.+...|..+...|.+.|++++|++.|++.++. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666677766666553 334455666777777778888888888887773 454 4567777777888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 638 (820)
.|++++|.+.|++..+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888777643 44 45667777788888888888 7777765 3344 45578888888888888888888
Q ss_pred HHHHHhccCCCCcchHHhHHHHhhhcCCc
Q 003439 639 ASDRLFEVDSENVGYYVLMSNIYANVGKW 667 (820)
Q Consensus 639 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 667 (820)
.++++++++|++..++..++.+|...|+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 88888888888888888888888776663
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=92.59 Aligned_cols=156 Identities=10% Similarity=0.001 Sum_probs=102.6
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL-FG 596 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~ 596 (820)
.+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...++..... .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344455566666666666666655 3443 345666666666777777777766665432 2322222221111 11
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchHHhHHHHhhhcCCcchHHH
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN--VGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
+.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222223455666554 3345 46788899999999999999999999999999875 5588899999999999999999
Q ss_pred HHHHHHh
Q 003439 673 VRSLARD 679 (820)
Q Consensus 673 ~~~~m~~ 679 (820)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-07 Score=89.02 Aligned_cols=161 Identities=8% Similarity=-0.089 Sum_probs=120.2
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHhHHhhCCCCChhHH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG----LVSEGQRYFHMMQEEFGIKPHLKHY 588 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~g~~p~~~~~ 588 (820)
+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44445555556666677777777777777654 44556666666666 5 788888888877643 245667
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 589 GCMVDLFGR----AGHLGMAHNFIQNM-PVRPD---ASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 589 ~~li~~~~~----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
..|..+|.. .+++++|.+.|++. ...|+ ...+..|...|.. .++.++|+..++++.++ |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 777777776 77899999998887 33442 6788888888888 78999999999999988 667888999
Q ss_pred HHHHhhhc-C-----CcchHHHHHHHHHhCCC
Q 003439 657 MSNIYANV-G-----KWEGVDEVRSLARDRGL 682 (820)
Q Consensus 657 l~~~y~~~-g-----~~~~A~~~~~~m~~~~~ 682 (820)
|+.+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999999888753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=107.24 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=124.0
Q ss_pred cCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003439 496 CGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 571 (820)
.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999877 34556789999999999999999999999998 4665 56888899999999999999999
Q ss_pred HHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhc
Q 003439 572 FHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH---GNMELGAVASDRLFE 645 (820)
Q Consensus 572 ~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 645 (820)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998854 34 4678899999999999999999999987 3444 566899999999999 999999999999999
Q ss_pred cCCCCcchHHhHH
Q 003439 646 VDSENVGYYVLMS 658 (820)
Q Consensus 646 ~~p~~~~~~~~l~ 658 (820)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=90.16 Aligned_cols=126 Identities=9% Similarity=0.014 Sum_probs=98.5
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFG 596 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 596 (820)
.+...|...|++++|+..|++.++ +.|+ ...+..+..++...|++++|.+.|+...+. .| +...+..+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 378889999999999999999999 4675 468888999999999999999999998853 55 4678888888887
Q ss_pred HcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 597 RAGH--LGMAHNFIQNMPVRPDA--SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 597 ~~g~--~~eA~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
..|. .+++...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445666676653 3443 355556667788899999999999999999963
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.5e-07 Score=106.17 Aligned_cols=188 Identities=11% Similarity=0.004 Sum_probs=143.8
Q ss_pred hccCChhHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhc
Q 003439 459 SHVGALRQGIKIHARVI--------KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH 527 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 527 (820)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66777788887777776 322 3356677888888999999999999998876 55667788899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 003439 528 GQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAH 605 (820)
Q Consensus 528 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~ 605 (820)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ .+.|+...+. .| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999 4675 4688889999999999999 9999988853 45 4578899999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHhcCC-----hhHHHHHHHHHhccCCCCcch
Q 003439 606 NFIQNM-PVRPDA-SIWGALLGACRIHGN-----MELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 606 ~~~~~m-~~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 653 (820)
+.++++ ...|+. ..|..+..++...++ .+...++.+.+..+.++++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999998 577874 488888888766555 244444445555555544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.7e-08 Score=87.80 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=86.1
Q ss_pred CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 580 GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 580 g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
.+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3444 3456667778888889999999888876 3344 67789999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.63 E-value=9.9e-07 Score=89.38 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCccccchHHHHHHhcCChHHHHHHHHHHH
Q 003439 467 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-----SSSVPWNAIISCHGIHGQGDKALNFFRQML 541 (820)
Q Consensus 467 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 541 (820)
+...++..++.+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566655544 34455556788888999999999999988743 234457778889999999999999999998
Q ss_pred HcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 542 DEGVRP-----DHITFVSLLTA--CSHSG--LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 542 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
+ ..| +..+...|..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 577 35666666666 33334 899999999998744 455333344455888999999999998765
Q ss_pred CC----------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 612 PV----------RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 612 ~~----------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
.. .|+ +.+.-.++......|+ +|.++++++.+..|+++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 254 4466566666666776 88999999999999887543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-07 Score=96.06 Aligned_cols=219 Identities=11% Similarity=0.011 Sum_probs=146.7
Q ss_pred cCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003439 425 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 504 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 504 (820)
.|++++|.+++++..+ . .+.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k-~--~~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK-Y--LKTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHH-H--HCCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHH-H--cccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667788888877665 1 1111 0 11136667666665543 345667778877777
Q ss_pred HHhhCCC-----CC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHHhcCCHHHHHH
Q 003439 505 LFYQVPR-----SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV---RPD--HITFVSLLTACSHSGLVSEGQR 570 (820)
Q Consensus 505 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 570 (820)
.|.+... .+ ...|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7765541 11 23477788888888999999999988776311 121 2467778888888 99999999
Q ss_pred HHHHhHHhhCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHH
Q 003439 571 YFHMMQEEFGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV---RPD----ASIWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 571 ~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 638 (820)
.|+...+.+.-.. ....+..+..+|.+.|++++|.+.+++. .+ .++ ...|..++..+...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998775321111 1357888899999999999999999876 11 122 2266677777888899999999
Q ss_pred HHHHHhccCCCCcch-----HHhHHHHhhhcCCcchHHH
Q 003439 639 ASDRLFEVDSENVGY-----YVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 639 ~~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~A~~ 672 (820)
.+++++ ++|+.... ...++..| ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99975543 23445545 5566555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=82.67 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
.+......|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555555555666665555554 2233 3445666666666666666666666666666666666666666666666
Q ss_pred CCcchHHHHHHHHHhC
Q 003439 665 GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~ 680 (820)
|++++|.+.+++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=8.4e-08 Score=87.55 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=87.8
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 580 GIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 580 g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 456777788888899999999998887 3455 56799999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++.+|...|++++|...++++.+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999876
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-07 Score=103.65 Aligned_cols=145 Identities=10% Similarity=-0.011 Sum_probs=87.2
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777766543 2245667777777777777777777777654 334455777777777777777777777
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 003439 538 RQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA---GHLGMAHNFIQNM 611 (820)
Q Consensus 538 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~---g~~~eA~~~~~~m 611 (820)
++..+. .|+ ...+..+..++...|++++|.+.++...+. .| +...+..+..+|... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 777773 454 456677777777777777777777776643 33 355667777777777 7777777777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=81.95 Aligned_cols=114 Identities=10% Similarity=-0.015 Sum_probs=94.0
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003439 545 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIW 620 (820)
Q Consensus 545 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 620 (820)
+.|+. ..+......+.+.|++++|++.|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55654 36777788888899999999999888753 34 5678888888999999999999988876 4445 46699
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
..+..++...|++++|+..++++++++|++..++..|.+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-07 Score=89.79 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=117.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHH----------------HHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVS----------------LLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|...|+...+. .
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---A 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C
Confidence 34456677888888888888887 45654 35555 888999999999999999998854 4
Q ss_pred C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 P-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGN--MELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
| +...+..+..+|...|++++|.+.|++. ...|+ ..+|..+...+...|+ .+.+...++++....|. ...+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHH
Confidence 5 5678899999999999999999999987 45564 6689999988876654 34556666666544442 2245567
Q ss_pred HHHhhhcCCcchHHHHHHHHHhC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..+...|++++|...++++.+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 88888899999999999998765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-07 Score=97.13 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=150.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 540 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 540 (820)
.|++++|.++++...+.... . .+...|++++|...|++. ...|...|++++|++.|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 56788899998888764221 1 122258899999988653 56788999999999999998
Q ss_pred HHcCC---CC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC--C--ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 541 LDEGV---RP-D-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK--P--HLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 541 ~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~--p--~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
.+... .+ . ..+|..+...|...|++++|...|+...+.+.-. | ...++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76321 11 1 2478888899999999999999999876542111 1 13577888899988 9999999999876
Q ss_pred -CCC---CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 612 -PVR---PD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 612 -~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
.+. .+ ..++..+...+...|++++|+..+++++++.|++.. .+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 11 357888999999999999999999999998765432 5667888899999999999999988
Q ss_pred H
Q 003439 678 R 678 (820)
Q Consensus 678 ~ 678 (820)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=90.15 Aligned_cols=131 Identities=7% Similarity=-0.069 Sum_probs=112.1
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 003439 547 PD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGAL 623 (820)
Q Consensus 547 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~l 623 (820)
|+ ...+..+...+...|++++|.+.|+...+. .| +...+..+..+|.+.|++++|.+.++++ ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 54 457778888899999999999999998854 45 4678889999999999999999999998 456776644333
Q ss_pred HH-HHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 624 LG-ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 624 l~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.. .+...++.+.|+..++++++.+|+++..+..|+.+|...|++++|...++.+.+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33 3677888999999999999999999999999999999999999999999999876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=86.50 Aligned_cols=183 Identities=13% Similarity=-0.015 Sum_probs=131.0
Q ss_pred cHhhHHHHhhccCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-cc---ccchHH
Q 003439 450 TYVSILPAYSHVGALRQGIKIHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSS-SV---PWNAII 521 (820)
Q Consensus 450 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~-~~---~~~~li 521 (820)
.+......+...|++++|...++.+++..... ....+..+...|.+.|++++|...|+++. .|+ .. .|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34455667888999999999999998865332 23567788999999999999999999876 232 21 344445
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 522 SCHGI------------------HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 522 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++.. .|+.++|+..|+++++ ..|+.. ....... .+ .+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l~------~~~~~~~------ 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----LV------FLKDRLA------ 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----HH------HHHHHHH------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----HH------HHHHHHH------
Confidence 55543 5789999999999998 467764 2222111 00 1111111
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
...-.+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|+..++++....|++...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999887 333432 478889999999999999999999999999987654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.8e-07 Score=85.22 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHh
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA-CSH 561 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~ 561 (820)
...+...+.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3445566778888888888888877 445566888888888888888888888887763 4533322221111 122
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---ASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a 636 (820)
.+...+|.+.++...+. .| +...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22333467777777643 45 4677888888999999999999998876 45554 45888899999999999999
Q ss_pred HHHHHHHhc
Q 003439 637 AVASDRLFE 645 (820)
Q Consensus 637 ~~~~~~~~~ 645 (820)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.9e-07 Score=86.10 Aligned_cols=125 Identities=10% Similarity=-0.013 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRI 629 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 629 (820)
+..+...+...|++++|.+.|+.. +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 445566677888888888888654 4567778888888888888888888888776 3333 56688999999999
Q ss_pred cCChhHHHHHHHHHhccCCCCc----------------chHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 630 HGNMELGAVASDRLFEVDSENV----------------GYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
.|++++|+..+++++++.|++. ..+..++.+|...|++++|.+.++++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 788999999999999999999999988763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.1e-06 Score=86.18 Aligned_cols=160 Identities=7% Similarity=-0.033 Sum_probs=116.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCChh----HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGV-RPDHI----TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGC 590 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~ 590 (820)
.+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|...++.......-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888877321 12211 2234555666777889999988888753222222 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHH
Q 003439 591 MVDLFGRAGHLGMAHNFIQNMP-----V---RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYV 655 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 655 (820)
+...|...|++++|.+.++++- . .+. ..+|..+...|...|++++|+..+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888999999999888887661 1 122 2378889999999999999999999998866433 55788
Q ss_pred hHHHHhhhcCC-cchHHHHHHHHHh
Q 003439 656 LMSNIYANVGK-WEGVDEVRSLARD 679 (820)
Q Consensus 656 ~l~~~y~~~g~-~~~A~~~~~~m~~ 679 (820)
.++.+|.+.|+ +++|.+.++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=6.4e-07 Score=80.94 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44556677788888888888888876 3344 567899999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...++...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=90.44 Aligned_cols=163 Identities=7% Similarity=-0.040 Sum_probs=118.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~ 587 (820)
+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|.+.++...+...-..+ ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566777888888998888888774221111 12334555667788999999998887642111111 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Ccc
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM----PVRPD-----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE------NVG 652 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 652 (820)
|+.+...|...|++++|.+.++++ ...|+ ..+|..+...|...|++++|+..+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888899999999999999988775 11222 258889999999999999999999999886542 145
Q ss_pred hHHhHHHHhhhcCCcchH-HHHHHHHHh
Q 003439 653 YYVLMSNIYANVGKWEGV-DEVRSLARD 679 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A-~~~~~~m~~ 679 (820)
.|..++.+|...|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 678899999999999999 777777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.50 E-value=8.5e-05 Score=82.10 Aligned_cols=366 Identities=13% Similarity=0.068 Sum_probs=173.8
Q ss_pred hCC-ChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC-HHHH
Q 003439 221 QSG-NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM-MRHA 298 (820)
Q Consensus 221 ~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A 298 (820)
+.| +++.|..+|+.+... -|. ++.+.+.++|+..++. .|++..|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777777777542 122 7888888888888874 4688888888777766653 3445
Q ss_pred HHHHhccC------CCCchHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---Ccchhhh
Q 003439 299 LRVFDQMM------ERDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL---NDCRNSR 365 (820)
Q Consensus 299 ~~~f~~m~------~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~---~~~~~a~ 365 (820)
..+|+... ..+...|...+.-+.. +|+.+.+..+|++.... |. ..+..+...|... .+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~-~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PM-GSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CC-TTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hh-hhHHHHHHHHHHHHHHhccccHH
Confidence 55555432 1345667777765432 35567778888887762 21 1122222222211 1111111
Q ss_pred hHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC----CCCchHHHHHHHHHHHcC--C-----hHHHHHH
Q 003439 366 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP----VKDVISWNTLITGYAQNG--L-----ASEAIEV 434 (820)
Q Consensus 366 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~l 434 (820)
.+... + .+.+..|+.+++.+. ..+...|...+.--..++ - .+.+..+
T Consensus 144 ~~~~~--------------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 144 KIVGD--------------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHH--------------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHH--------------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 11111 0 011222222222111 113335554444322211 0 2345567
Q ss_pred HHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC---
Q 003439 435 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA-MSLFYQVP--- 510 (820)
Q Consensus 435 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~--- 510 (820)
|+++.. . .+-+...+...+.-+...|+++.|..+++..++. +.+...+. .|+...+.++. ..+.+...
T Consensus 202 ye~al~-~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 202 HNYILD-S-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHH-H-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhc
Confidence 777665 1 1222334444555556677778888888877776 22322222 22222111111 11111110
Q ss_pred ---------CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHhHHhhC
Q 003439 511 ---------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-HSGLVSEGQRYFHMMQEEFG 580 (820)
Q Consensus 511 ---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~g 580 (820)
......|-..+....++++.+.|..+|++. .. ..++...|......-. ..++.+.|..+|+...+.++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 000122555555555556666666666666 21 1112222221111111 12246666666666665432
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003439 581 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 581 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 644 (820)
- ++..+...++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..
T Consensus 352 ~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 352 D--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp T--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 22334445666666666666666666652 234566666665556666666666555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-05 Score=81.57 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=118.5
Q ss_pred CHHHHHHHHhhCC---CCCccccchHHHHH----Hhc---CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHH
Q 003439 498 RIDDAMSLFYQVP---RSSSVPWNAIISCH----GIH---GQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 498 ~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 566 (820)
+++++++.++.+. +++...|+.-...+ ... +++++++++++++.+. .| |...|..-.....+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccC
Confidence 5555555555444 33333444433333 333 5677888888888774 44 4456666666667777776
Q ss_pred --HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh-H
Q 003439 567 --EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH------LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNME-L 635 (820)
Q Consensus 567 --~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~------~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~-~ 635 (820)
+++++++.+.+. -.-|...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+.. .
T Consensus 162 ~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 777877777753 12244566665666666665 78888887766 3334 6778888888888877744 4
Q ss_pred HHHHHHHHhccC---CCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 636 GAVASDRLFEVD---SENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 636 a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
....++++++++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 556777777766 77777888888888888888888888888875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.3e-06 Score=80.49 Aligned_cols=144 Identities=8% Similarity=-0.087 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL 564 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 564 (820)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..+. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3445566777788888888887777666667777777777777777777777777774 34 34466667777777777
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 565 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 565 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
+++|.+.|+...+. .|+..... +...| +...|+ ..+|..+..++...|++++|+..++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777766643 12110000 00000 012233 246777777888888888888888888
Q ss_pred hccCCCC
Q 003439 644 FEVDSEN 650 (820)
Q Consensus 644 ~~~~p~~ 650 (820)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8888865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=77.42 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35566677777888888888888776 3334 567888888899999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999998888765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=94.44 Aligned_cols=191 Identities=12% Similarity=-0.001 Sum_probs=128.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 557 (820)
+...+..+...|.+.|++++|...|++.. +.+...|..+..+|...|++++|+..+++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34456667777788888888888887665 44566678888888888888888888888887 4565 457778888
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 636 (820)
++...|++++|...|+...+. .|+. ..+...+....+.++...... .......++..+...+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 888999999999988877643 2211 111112222222221112122 222233344444444433 2 36889999
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhc-CCcchHHHHHHHHHhC
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANV-GKWEGVDEVRSLARDR 680 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 680 (820)
++.++++++++|++......+..++.+. +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777788777776 7789999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-06 Score=73.63 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGAC 627 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~ 627 (820)
..+..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666667777777777777777777643 1234566777777788888888888877766 22 33566888888999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999998888888888776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.9e-06 Score=80.38 Aligned_cols=172 Identities=6% Similarity=-0.096 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCccccchHHHHHHhcC----ChHHHHHHHHHHH
Q 003439 467 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG----QGDKALNFFRQML 541 (820)
Q Consensus 467 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 541 (820)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.. ..+...+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 455566665554 56667777777878888888888887765 4455567777777776 6 8889999998887
Q ss_pred HcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHH----cCCHHHHHHHHHh
Q 003439 542 DEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDLFGR----AGHLGMAHNFIQN 610 (820)
Q Consensus 542 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~----~g~~~eA~~~~~~ 610 (820)
+.| +...+..|...|.. .+++++|.++|+...+ ..|. ...+..|..+|.. .++.++|.+.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55667777777776 7889999999887763 3443 6778888888888 7889999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 003439 611 M-PVRPDASIWGALLGACRIH-G-----NMELGAVASDRLFEVDS 648 (820)
Q Consensus 611 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 648 (820)
. ...++...+..|...|... | +.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3334556777777777643 3 88999999999887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-05 Score=87.03 Aligned_cols=101 Identities=7% Similarity=-0.060 Sum_probs=56.6
Q ss_pred CC-ChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCchHHHHHHHHHHhCCC-hhhHHHH
Q 003439 257 SD-NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSND-PITAHGF 332 (820)
Q Consensus 257 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~-~~~A~~~ 332 (820)
.| +++.|+.+++.++..- |. |+.+.+..+|++... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777777777776542 11 889999999988765 788888887777666553 3455666
Q ss_pred HHHHHHc-CCCC-CcchHHHHHHHHH----hcCcchhhhhHHHHHHH
Q 003439 333 FTTMQQA-GIQP-DLLTLVSLTSIVA----QLNDCRNSRSVHGFIMR 373 (820)
Q Consensus 333 ~~~m~~~-g~~p-d~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~ 373 (820)
|+..... |..| +...|...+.-+. ..++.+.++.+++.++.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 6665543 4333 2233333333322 12345556666666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-07 Score=94.57 Aligned_cols=126 Identities=6% Similarity=-0.067 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----------------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----------------LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----------------~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
.+..+...+...|++++|.+.|+...+. .|+ ...|..+..+|.+.|++++|++.+++. ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555666666666666666655532 232 367888889999999999999999877 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH-HHHHHHHHh
Q 003439 614 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV-DEVRSLARD 679 (820)
Q Consensus 614 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A-~~~~~~m~~ 679 (820)
.| +...|..+..++...|++++|+..++++++++|++...+..++.++...|++++| ...++.|.+
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5669999999999999999999999999999999999999999999999999999 456666643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.4e-07 Score=88.36 Aligned_cols=181 Identities=7% Similarity=-0.050 Sum_probs=111.6
Q ss_pred hcCCHHHHHHHHhhCC---CCCccccchH-------HHHHHhcCChHHHHHHHHHHHHcCCCCChh--------------
Q 003439 495 KCGRIDDAMSLFYQVP---RSSSVPWNAI-------ISCHGIHGQGDKALNFFRQMLDEGVRPDHI-------------- 550 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 550 (820)
..++.+.|.+.|.++. +.....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 3566666666666555 2333446555 3444444444444444444333 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----H
Q 003439 551 --------TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA----S 618 (820)
Q Consensus 551 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~----~ 618 (820)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122345566777888888888776652 2354335555566777888888888888766433332 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVD--SE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...++++.+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66677777888888888888888876433 43 3446667788888888888888888887765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.1e-06 Score=74.37 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC 627 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 627 (820)
..+..+...+...|++++|.+.++..... .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666677777788888888888777643 1234567777778888888888888887765 2334 466888888999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
...|++++|...+++++++.|++...+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998888764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-05 Score=78.68 Aligned_cols=226 Identities=7% Similarity=0.010 Sum_probs=163.1
Q ss_pred CChHHHHHHHHhhhhcCCCCCCcccH-hhHHHHhhccC--ChhHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 003439 426 GLASEAIEVFQMMEECNEINPNQGTY-VSILPAYSHVG--ALRQGIKIHARVIKNCLCFDVFVATCLVDMY----GKC-- 496 (820)
Q Consensus 426 g~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~~~-- 496 (820)
...++|+++++.+.. +.|+..|. +.--..+...+ .++++.+.++.++....+ +..+++.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 344678888887777 67766553 33333444555 778888888877776533 333444333333 444
Q ss_pred -CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChH--HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-----
Q 003439 497 -GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGD--KALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL----- 564 (820)
Q Consensus 497 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~----- 564 (820)
++++++.++++++. +++...|+--.-.+.+.|.++ ++++.++++++. .| |...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 78889999888877 566677877777777888887 999999999995 44 55677766666777776
Q ss_pred -HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHH
Q 003439 565 -VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM-AHNFIQNM-PV----RPDASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 565 -~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~e-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
+++++++++.+... -.-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|+
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999888853 23366788888899999888544 55677665 22 236779999999999999999999
Q ss_pred HHHHHHhc-cCCCCcchHHhHHH
Q 003439 638 VASDRLFE-VDSENVGYYVLMSN 659 (820)
Q Consensus 638 ~~~~~~~~-~~p~~~~~~~~l~~ 659 (820)
++++.+.+ .+|-...++...+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 99999996 89988877765544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.1e-06 Score=78.23 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
.+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677777777777777776643 1224566777777777888888888777765 2233 5668888888999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHh--HHHHhhhcCCcchHHHHHHHHHh
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVL--MSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
..|++++|+..+++++++.|++...+.. ++..+...|++++|...++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988887754 44448888999999988877653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-06 Score=75.34 Aligned_cols=114 Identities=9% Similarity=0.027 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 626 (820)
..+..+...+...|++++|.+.++...+ ..| +...+..+...|...|++++|.+.+++. ...| +..+|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3555566666666677777766666552 233 4556666666777777777777777665 2233 46688888888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
+...|++++|+..++++++++|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999888888888888877664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=86.40 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=103.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFGR 597 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~ 597 (820)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 567788889999999999888773 476555556666888999999999999754311 1 121 2367778899999
Q ss_pred cCCHHHHHHHHHhCC---CCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 598 AGHLGMAHNFIQNMP---VRPD-A-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 598 ~g~~~eA~~~~~~m~---~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
.|++++|++.|++.. ..|. . ..+..+..++...|+.++|...|++++..+|+ ......|.+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999872 2253 3 37778888999999999999999999999997 666655543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.7e-05 Score=78.13 Aligned_cols=158 Identities=8% Similarity=-0.049 Sum_probs=119.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCc---c------ccchHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHH
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVPRSSS---V------PWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PDH----ITFVS 554 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~~~~~---~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 554 (820)
.+..+.+.|++++|.+++++...... . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999987653211 1 1334666677788999999999999984332 232 26888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhC----CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFG----IKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPD-ASIWG 621 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g----~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~ 621 (820)
+..+|...|++++|.++|+.+.+... ..+. ..++..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998875321 1121 247888999999999999999998866 12223 56899
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 003439 622 ALLGACRIHGN-MELGAVASDRLFEV 646 (820)
Q Consensus 622 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 646 (820)
.+..++...|+ .++|+..+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 59999999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.3e-06 Score=79.38 Aligned_cols=94 Identities=11% Similarity=0.108 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA-CRIHGNM--ELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
.+..+...|...|++++|.+.+++. ...| +...|..+... +...|++ ++|+..++++++.+|+++..+..++.+|
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3334444444444444444444433 1122 34455666666 5566776 7777777777777777777777777777
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|...++++.+.
T Consensus 126 ~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 126 FMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHhh
Confidence 7777777777777776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.8e-07 Score=80.35 Aligned_cols=114 Identities=9% Similarity=-0.011 Sum_probs=89.3
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 537 FRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 537 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
|++++. +.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444 45644 46667777888899999999999888753 34 5677788888899999999999998876 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 614 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 614 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.| +...|..+..++...|++++|+..+++++++.|+++....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 44 4568888999999999999999999999999998776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-05 Score=81.10 Aligned_cols=162 Identities=7% Similarity=-0.055 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCc------cccchHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hh
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVPR---SSS------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVR---PD--HI 550 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~ 550 (820)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778889999999988875431 111 11334556677889999999999998863221 11 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC------CCC-H
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV------RPD-A 617 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~------~p~-~ 617 (820)
+++.+...|...|++++|.++|+...+.....|+ ...+..+...|.+.|++++|.+.+++. .. ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999988733222232 258888999999999999999999876 11 111 5
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 003439 618 SIWGALLGACRIHGNMELG-AVASDRLFEV 646 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 646 (820)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6888999999999999999 7878888753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-06 Score=77.10 Aligned_cols=104 Identities=6% Similarity=-0.032 Sum_probs=87.9
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHH
Q 003439 545 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIW 620 (820)
Q Consensus 545 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~ 620 (820)
+.|+. ..+..+...+.+.|++++|.+.|+..... .| +...|..+..+|.+.|++++|.+.|++. .+.|+ ...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45654 46778888899999999999999998853 45 5678889999999999999999999887 44554 5689
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.8e-06 Score=73.20 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=78.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556667777777777777777777765 2333 4668888888888899999999999999999998888899999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999888888764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.3e-06 Score=71.14 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHhHHHH
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNI 660 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 660 (820)
...+..+...+.+.|++++|.+.+++. ... .+..+|..+...+...|++++|+..+++++++.|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345555666667777777777777665 222 34567788888888888888888888888888888 88888888888
Q ss_pred hhhc-CCcchHHHHHHHHHhCC
Q 003439 661 YANV-GKWEGVDEVRSLARDRG 681 (820)
Q Consensus 661 y~~~-g~~~~A~~~~~~m~~~~ 681 (820)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888877653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-06 Score=77.64 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455555556666666666666554 2233 455666666667777777777777777777777777777777777777
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...+++..+.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 77777777776666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=9.6e-06 Score=69.62 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444444455444444443 1122 33445555555555555555555555555555555555555555555555
Q ss_pred CcchHHHHHHHHHh
Q 003439 666 KWEGVDEVRSLARD 679 (820)
Q Consensus 666 ~~~~A~~~~~~m~~ 679 (820)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.9e-06 Score=76.89 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3588888889999999999999999999999999999999999999999999999999988765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=8.2e-07 Score=85.43 Aligned_cols=170 Identities=8% Similarity=-0.040 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 566 (820)
+......|++++|.+.++.-.. .....|..+...+...|++++|++.|++.++ +.|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHH
Confidence 3344445556655555543221 1222355555566666666666666666665 22322110000 000
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 644 (820)
.-. ..+ ....+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 1246677788888888888888888776 3344 56688899999999999999999999999
Q ss_pred ccCCCCcchHHhHHHHhhhcCCcchHH-HHHHHHHhC
Q 003439 645 EVDSENVGYYVLMSNIYANVGKWEGVD-EVRSLARDR 680 (820)
Q Consensus 645 ~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~~~ 680 (820)
+++|++...+..++.++...|+.+++. ..++.|..+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988888776 455555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.1e-06 Score=91.16 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=107.2
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDL 594 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 594 (820)
|..+...+.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|.+.+++..+ +.| +...+..+..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 455556677788999999999988884 564 56788888889999999999999988874 344 46778888889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCChhHHHHHHH-----------HHhccCCCCcchH-----
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGA--CRIHGNMELGAVASD-----------RLFEVDSENVGYY----- 654 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~-----------~~~~~~p~~~~~~----- 654 (820)
|.+.|++++|.+.+++. ...|+ ...|..+..+ +...|++++|+..++ ++++++|+....+
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 163 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence 99999999999988876 33343 3355555555 778899999999998 7777776643322
Q ss_pred ------HhHHHHhhhcCCcchHH--HHHHHHH
Q 003439 655 ------VLMSNIYANVGKWEGVD--EVRSLAR 678 (820)
Q Consensus 655 ------~~l~~~y~~~g~~~~A~--~~~~~m~ 678 (820)
..+...+...+.+.+.. .+..++.
T Consensus 164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~ 195 (477)
T 1wao_1 164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVK 195 (477)
T ss_dssp CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 23445555666666543 3444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.6e-06 Score=74.46 Aligned_cols=94 Identities=10% Similarity=-0.060 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667778888888888888876 3445 5668888888999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhC
Q 003439 665 GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~ 680 (820)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999888754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-05 Score=75.57 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=90.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCC-ChhHHHHHHHHHHHcCC
Q 003439 526 IHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKP-HLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p-~~~~~~~li~~~~~~g~ 600 (820)
..|++++|.+.++.+.. .++ ...++..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34566666664433322 111 23355556666666666666666666655321 1111 23456666667777777
Q ss_pred HHHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--Cc----chHHhHHHHhhhcC
Q 003439 601 LGMAHNFIQNM-P---VRP-D----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NV----GYYVLMSNIYANVG 665 (820)
Q Consensus 601 ~~eA~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~y~~~g 665 (820)
+++|.+.+++. . ..+ + ..++..+...+...|++++|+..+++++++.+. +. ..+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777766654 1 112 2 235677777788888888888888887764321 21 23467888888999
Q ss_pred CcchHHHHHHHHHh
Q 003439 666 KWEGVDEVRSLARD 679 (820)
Q Consensus 666 ~~~~A~~~~~~m~~ 679 (820)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888877764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=69.45 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788899999999999999999987 223 357789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 003439 663 NVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~~ 680 (820)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=72.23 Aligned_cols=105 Identities=8% Similarity=-0.032 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALL 624 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll 624 (820)
.+..+...+...|++++|.+.|+... ...|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 44445555555555555555555544 23343 334444444455555555555444443 1122 233444444
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.++...|++++|+..++++++++|++...+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4444555555555555555555554444443333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=71.39 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567888899999999999999999987 4455 5679999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.5e-06 Score=75.31 Aligned_cols=94 Identities=7% Similarity=-0.008 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------hHHhH
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG-------YYVLM 657 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 657 (820)
.+..+...|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|+..++++++++|++.. .|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566788888889999999888876 4455 4668999999999999999999999999999987654 56678
Q ss_pred HHHhhhcCCcchHHHHHHHHHhC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.+|...|++++|.+.+++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999987754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=78.51 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCcchH----HhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEV-------DSENVGYY----VLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|..+..++...|++++|+..+++++++ +|++...| ..++.++...|++++|...+++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888888888888888888888888 99888888 88999999999999999998888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.3e-06 Score=76.96 Aligned_cols=128 Identities=8% Similarity=0.100 Sum_probs=101.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HHHcCCH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL-FGRAGHL 601 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~ 601 (820)
+...|++++|+..+++..+. .| +...+..+...+...|++++|...|+...+.. +.+...+..+..+ |.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence 34678889999999998885 45 45688888999999999999999999988542 2356677888888 7789998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 602 --GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 602 --~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
++|.+.++++ ...| +...|..+...+...|++++|+..+++++++.|++.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 3345 4668899999999999999999999999999998765443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-05 Score=70.36 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=45.1
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCM 591 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~l 591 (820)
|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.++...+. .| +...+..+
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 105 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHHHHH
Confidence 44455555555555555555555554 3344 234444455555555555555555554432 22 33444455
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 003439 592 VDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m 611 (820)
..+|.+.|++++|.+.+++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.5e-05 Score=66.91 Aligned_cols=110 Identities=8% Similarity=0.000 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC 627 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 627 (820)
..+..+...+...|++++|.+.++..... .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666677777777777766643 1224556666777777777777777777665 2233 466788888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
...|++++|...++++++..|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999998887777666553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=76.53 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=99.3
Q ss_pred hcCCHHHHHH---HHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHH
Q 003439 495 KCGRIDDAMS---LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVS 566 (820)
Q Consensus 495 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 566 (820)
..|++++|.+ .+..-+......|+.+...|...|++++|+..+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 444333333445666666777777777777777776651 11222 246667777888888888
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCh
Q 003439 567 EGQRYFHMMQEEFGIKP-H----LKHYGCMVDLFGRAGHLGMAHNFIQNM----PVRPD----ASIWGALLGACRIHGNM 633 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 633 (820)
+|.+.++...+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887665422122 1 345777788888889988888888765 11122 22467788888899999
Q ss_pred hHHHHHHHHHhccC
Q 003439 634 ELGAVASDRLFEVD 647 (820)
Q Consensus 634 ~~a~~~~~~~~~~~ 647 (820)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-05 Score=69.67 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456778888999999999999999987 3334 6778999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-06 Score=76.74 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=84.8
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003439 545 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIW 620 (820)
Q Consensus 545 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 620 (820)
+.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34533 35556677788888888888888887743 34 5567778888888888888888888876 3344 45578
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
..+..++...|++++|+..+++++++.|+++.......
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88899999999999999999999999998877655443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=6e-06 Score=91.23 Aligned_cols=119 Identities=8% Similarity=0.005 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
+...+...|++++|.+.+++..+. .| +...|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344566789999999999998854 45 4788999999999999999999999987 4455 4669999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHH--hhhcCCcchHHHHHHH
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNI--YANVGKWEGVDEVRSL 676 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 676 (820)
++++|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999988888 8899999999999874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=5.3e-06 Score=74.84 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC------
Q 003439 554 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-------------LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV------ 613 (820)
Q Consensus 554 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~eA~~~~~~m-~~------ 613 (820)
.....+.+.|++++|.+.|+...+- .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344445555555555555555432 222 126666667777777777777666654 34
Q ss_pred -CCCHH-HH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 614 -RPDAS-IW----GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 614 -~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
.|+.. .| .....++...|++++|+..|+++++++|++...+.-+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 88765 88 9999999999999999999999999999887765544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=69.91 Aligned_cols=109 Identities=8% Similarity=-0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
.+..+...+...|++++|.+.|+...+. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555566666777777777777766643 1224566777777777777777777777765 3344 4568888888888
Q ss_pred hcCChhHHHHHHHHHhccC------CCCcchHHhHHHHh
Q 003439 629 IHGNMELGAVASDRLFEVD------SENVGYYVLMSNIY 661 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y 661 (820)
..|++++|+..++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999988 77766666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=72.91 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 626 (820)
..+..+...+...|++++|.+.|+...+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666777778888888888888877743 34 5667778888888888888888888776 3444 46689999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
+...|++++|+..++++++++|++...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-05 Score=70.62 Aligned_cols=125 Identities=13% Similarity=0.003 Sum_probs=78.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
|..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|.+.++...+. .+.+...+..+..+|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 444555666667777777777776663 34 3456666666777777777777777776643 122455667777777
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCChhHHHHHHHHHhc
Q 003439 596 GRAGHLGMAHNFIQNM-PVRP-DASIWGA--LLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
.+.|++++|.+.+++. ...| +...|.. ++..+...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777777665 2233 3334433 33336667778888887776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-05 Score=68.13 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-------VGYYVL 656 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 656 (820)
..+..+...+...|++++|...+++. ... .+..+|..+...+...|++++|...+++++++.|++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35566777777788888888877765 223 356688888888999999999999999999988766 777888
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++.+|...|++++|.+.++++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=2e-05 Score=69.26 Aligned_cols=90 Identities=11% Similarity=0.028 Sum_probs=61.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhh
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYA 662 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 662 (820)
+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|+..++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445556666666666666654 122322 366667777777778888888888877777777 566777777888
Q ss_pred hcCCcchHHHHHHHHHhC
Q 003439 663 NVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~~ 680 (820)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888777777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=83.03 Aligned_cols=96 Identities=9% Similarity=-0.092 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----------------ASIWGALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
...+..+...|.+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 457788899999999999999999887 33443 4799999999999999999999999999999
Q ss_pred CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 648 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 648 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+++.++..++.+|...|++++|...++++.+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3e-05 Score=85.19 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|+..|+++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 367888888999999999999998876 3444 56689999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHH-HHHHHHhC
Q 003439 663 NVGKWEGVDE-VRSLARDR 680 (820)
Q Consensus 663 ~~g~~~~A~~-~~~~m~~~ 680 (820)
..|+++++.+ .++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998874 45555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=6e-05 Score=72.14 Aligned_cols=94 Identities=12% Similarity=-0.035 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-D----------------ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
.+..+...+.+.|++++|.+.|++. ...| + ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555566666666666666554 1111 1 26888899999999999999999999999999
Q ss_pred CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 649 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 649 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+++..+..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.6e-05 Score=64.56 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP---DASIWGALLGAC 627 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 627 (820)
+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 333444444444444444444444432 1112334455555555556666666555554 2233 356777788888
Q ss_pred Hhc-CChhHHHHHHHHHhccCCCCc
Q 003439 628 RIH-GNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 628 ~~~-g~~~~a~~~~~~~~~~~p~~~ 651 (820)
... |++++|++.++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.9e-06 Score=72.76 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHH
Q 003439 598 AGHLGMAHNFIQNM-PV---RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 598 ~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
.|++++|++.|++. .. .|+ ..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666666666665 33 243 34677777777777888888888888877778777777777888888888888877
Q ss_pred HHHHHHhC
Q 003439 673 VRSLARDR 680 (820)
Q Consensus 673 ~~~~m~~~ 680 (820)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00027 Score=73.02 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=105.9
Q ss_pred HHHHHHHHhhCC---CCCccccchHHHHHHhc-C-ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHH------
Q 003439 499 IDDAMSLFYQVP---RSSSVPWNAIISCHGIH-G-QGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVS------ 566 (820)
Q Consensus 499 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~------ 566 (820)
++++++.++.+. +++...|+.-...+... + ++++++++++++++ ..| |...|+.-.....+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 555555555544 33344455544444444 4 56677777777766 344 3345555444444444444
Q ss_pred --HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--
Q 003439 567 --EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH-------LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM-- 633 (820)
Q Consensus 567 --~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-------~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-- 633 (820)
+++++++.+.+. -.-|...|+....++.+.|+ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 777777777653 12255566666666666665 67788877765 3344 667888877777776654
Q ss_pred ------------------hHHHHHHHHHhccC------CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 634 ------------------ELGAVASDRLFEVD------SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 634 ------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.........+.... +.++-+...|+++|...|+.++|.++++.+.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222332222 345556678999999999999999999998754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00047 Score=70.92 Aligned_cols=225 Identities=10% Similarity=0.020 Sum_probs=119.5
Q ss_pred HHcCCh-HHHHHHHHhhhhcCCCCCCcccHh----hHHHHhhcc-------CChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 423 AQNGLA-SEAIEVFQMMEECNEINPNQGTYV----SILPAYSHV-------GALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 423 ~~~g~~-~~A~~l~~~m~~~~g~~pd~~t~~----~ll~a~~~~-------~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
.+.|.+ ++|++++..+.. +.|+..|.- .++...... ..++++..+++.+++... -+..+++.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344554 478888888876 777766532 122222111 114556666666665442 2455555555
Q ss_pred HHHHhcC--CHHHHHHHHhhCC---CCCccccchHHHHHHhcCC-hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhc-
Q 003439 491 DMYGKCG--RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ-GDKALNFFRQMLDEGVRP-DHITFVSLLTACSHS- 562 (820)
Q Consensus 491 ~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~- 562 (820)
-.+.+.| .++++..+++++. ++|...|+--.-.+...|. .+++++.++++++. .| |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhh
Confidence 5555555 3667777666665 4455556655555556666 46777777777764 34 334555544444433
Q ss_pred -------------CCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCC
Q 003439 563 -------------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA-----------GHLGMAHNFIQNM-PVRPD 616 (820)
Q Consensus 563 -------------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~-----------g~~~eA~~~~~~m-~~~p~ 616 (820)
+.++++++++...... .| |...|+.+-.++.+. +.++++++.++++ ...||
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 3456666666655532 33 344555444444444 3456666666655 34555
Q ss_pred HHHHHHHHHHH-----HhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 617 ASIWGALLGAC-----RIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 617 ~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
. .|..+..+. ...|..++....++++.+++|...+.|..|
T Consensus 271 ~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 271 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 4 343222211 123455566666666666666555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.4e-05 Score=78.63 Aligned_cols=110 Identities=6% Similarity=-0.131 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALL 624 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll 624 (820)
+...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4457777888899999999999999988754 44 5678888899999999999999998876 55564 55888888
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHH
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 660 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 660 (820)
.++...|++++|+..++++++++|++...+..+++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 899999999999999999999988776555444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=5e-05 Score=69.25 Aligned_cols=128 Identities=11% Similarity=0.006 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM----PVRPD----ASI 619 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~ 619 (820)
+..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444455555555555444322110011 124455555556666666666555543 00111 335
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCC------CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSE------NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+..+...+...|++++|+..+++++++.+. ....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777777888888888888877764321 234566788888889999998888887764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.89 E-value=5.3e-05 Score=67.28 Aligned_cols=100 Identities=6% Similarity=-0.137 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLG 625 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 625 (820)
+...+..+...+...|++++|...|...... .+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4456777777788888888888888777643 1224567777788888888888888888776 3334 4668888999
Q ss_pred HHHhcCChhHHHHHHHHHhccCCC
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
.+...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999998887
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-05 Score=83.19 Aligned_cols=125 Identities=10% Similarity=0.024 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFG--IKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPDAS-IWG 621 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g--~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~ 621 (820)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567788888877776654321 112 1356777888888888888888877665 2445544 889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcchH---HhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 622 ALLGACRIHGNMELGAVASDRLFE-----VDSENVGYY---VLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 622 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.|...|...|++++|+.+++++++ +.|+++.+- ..|..++...|++++|..+++.+++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876 567776544 4688889999999999999999987643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=3.7e-05 Score=67.32 Aligned_cols=108 Identities=6% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV----RPD----ASIWGA 622 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----~p~----~~~~~~ 622 (820)
+..+...+...|++++|..+|+..... .+.+...+..+...|.+.|++++|.+.++++ .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444555555555555544432 1123344445555555555555555555443 11 122 456677
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
+...+...|++++|...++++++..| ++.....+..++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777788888888888888887777 4555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.3e-05 Score=80.59 Aligned_cols=163 Identities=6% Similarity=-0.137 Sum_probs=100.9
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh----HHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCCC-hhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHI----TFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPH-LKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p~-~~~ 587 (820)
+..+...|...|++++|.+.+.++...- -.++.. ..+.+-..+...|+.+++.+++....... +..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445666777777777777776665421 111211 12222223345677777777777654321 22222 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---C----cc
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-----P--VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE---N----VG 652 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~ 652 (820)
+..|...|...|++++|.+++++. . .+|. ..++..++..|...|+++.|...+++++.+.+. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677788888888888888887755 1 1222 337777888888888888888888887764322 1 23
Q ss_pred hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+..++.++...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455677888888888888877766643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0003 Score=79.07 Aligned_cols=169 Identities=10% Similarity=-0.001 Sum_probs=136.6
Q ss_pred CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 003439 497 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ----------GDKALNFFRQMLDEGVRPD-HITFVSLLTACSHS 562 (820)
Q Consensus 497 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 562 (820)
..-++|.+.++++. +.+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34466788777766 4455567777666666666 89999999999994 564 45888888888889
Q ss_pred C--CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 003439 563 G--LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-HLGMAHNFIQNM-PVRP-DASIWGALLGACRIH------- 630 (820)
Q Consensus 563 g--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 630 (820)
| +++++++.++.+.+. -.-+...|+.-..++.+.| ..+++.+.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 9 789999999999864 2235677888888888999 899999999988 4555 577999988887763
Q ss_pred -------CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcch
Q 003439 631 -------GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 669 (820)
Q Consensus 631 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 669 (820)
+.++++.+.+++++.++|++..+|..+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998666
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00015 Score=63.42 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=62.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHL----KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLG 625 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 625 (820)
+...+...|++++|.+.|+.+.+. .|+. ..+..+...|.+.|++++|.+.+++. ...|+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344455556666666666555543 1221 24555566666666666666666554 22232 446677777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.+...|++++|+..++++++..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 888888888888888888888887665544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=5e-05 Score=66.10 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
+..+...+...|++++|...|+...+. .| +...+..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555666667777777777666643 33 4556666677777777777777777665 3344 4557888888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCc
Q 003439 629 IHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
..|++++|+..++++++++|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0022 Score=66.16 Aligned_cols=229 Identities=11% Similarity=0.078 Sum_probs=156.0
Q ss_pred HHHHcCChHHHHHHHHhhhhcCCCCCCcccH-hhHHHHhhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C
Q 003439 421 GYAQNGLASEAIEVFQMMEECNEINPNQGTY-VSILPAYSHVG-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-G 497 (820)
Q Consensus 421 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g 497 (820)
.....+..++|+++++++.. +.|+..|. +.--..+...+ .++++.++++.+++...+ +..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 33445566788888888877 77766553 33333444556 588888888888876533 556666666666665 6
Q ss_pred -CHHHHHHHHhhCCCC---CccccchHHHHHHhcCChH--------HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003439 498 -RIDDAMSLFYQVPRS---SSVPWNAIISCHGIHGQGD--------KALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL 564 (820)
Q Consensus 498 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 564 (820)
++++++++++++... |...|+--.-.+.+.|..+ ++++.++++++. .| |...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccc
Confidence 788999999888744 4455665555555555555 899999999995 45 55678777777777775
Q ss_pred -------HHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCH--------------------HHHHHHHHhCC-C--
Q 003439 565 -------VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHL--------------------GMAHNFIQNMP-V-- 613 (820)
Q Consensus 565 -------~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~--------------------~eA~~~~~~m~-~-- 613 (820)
+++++++++.+... .| |...|+.+-.++.+.|+- .+..++..++. .
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred cccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 78888888887743 45 566787777778777753 44445554441 1
Q ss_pred -----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCcchHHhHH
Q 003439 614 -----RPDASIWGALLGACRIHGNMELGAVASDRLF-EVDSENVGYYVLMS 658 (820)
Q Consensus 614 -----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 658 (820)
.+....+..|+..|...|+.++|.++++.+. +.+|-...++...+
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2567788999999999999999999999986 78886665555433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.9e-05 Score=79.12 Aligned_cols=112 Identities=7% Similarity=-0.061 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACR 628 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~ 628 (820)
..+..+...+.+.|++++|.+.|+...+.. |+. ...-..+++. ...| +..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888776421 000 0000000000 0112 2335555555566
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.|++++|+..++++++++|+++.++..++.+|...|++++|...++++.+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=63.39 Aligned_cols=58 Identities=7% Similarity=0.024 Sum_probs=33.2
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
|..+...+.+.|++++|++.|++.++ +.|+ ...|..+..+|...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555566666666666666665 3443 3355555666666666666666665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.77 E-value=5.9e-05 Score=80.13 Aligned_cols=136 Identities=7% Similarity=-0.011 Sum_probs=104.7
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVD 593 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~ 593 (820)
..|..+...+.+.|++++|++.|++.++. .|+.. .....+++. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 34788888999999999999999998872 11110 011111111 1122 3457788888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHH
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 671 (820)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5556 46689999999999999999999999999999999999999999998888877765
Q ss_pred H
Q 003439 672 E 672 (820)
Q Consensus 672 ~ 672 (820)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.8e-05 Score=81.64 Aligned_cols=146 Identities=5% Similarity=-0.116 Sum_probs=82.7
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 594 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 594 (820)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 3366777778888889999999988887 4565442 22334444443322 1 1367788889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh-hhcCCcchHH
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY-ANVGKWEGVD 671 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~A~ 671 (820)
|.+.|++++|++.+++. ...| +...|..+..+|...|++++|+..++++++++|++...+..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 3445 5668999999999999999999999999999999999988888874 4556677788
Q ss_pred HHHHHHHhC
Q 003439 672 EVRSLARDR 680 (820)
Q Consensus 672 ~~~~~m~~~ 680 (820)
..++.|.+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0014 Score=67.43 Aligned_cols=215 Identities=10% Similarity=0.047 Sum_probs=150.2
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhhCC---CCCccccchHHHHHHh
Q 003439 461 VGAL-RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR----------IDDAMSLFYQVP---RSSSVPWNAIISCHGI 526 (820)
Q Consensus 461 ~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 526 (820)
.|.+ ++|.++.+.++..... +..+++.--..+...|. ++++..+++.+. +++...|+--.-.+..
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 3444 3678888888775432 33344433333332222 678888888776 5677778887777777
Q ss_pred cC--ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc----
Q 003439 527 HG--QGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL-VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA---- 598 (820)
Q Consensus 527 ~g--~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---- 598 (820)
.| .+++++++++++.+. .| |...|+.-..++...|. +++++++++.+.+. -.-|...|+....++.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 121 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred cCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 77 489999999999995 45 55677777777778887 69999999999864 233566777777776665
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCcchHH
Q 003439 599 ----------GHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH-----------GNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 599 ----------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+.++++++.+++. ...| |..+|+-+-..+... +.++++++.++++++++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5688999998876 3344 677998777666655 4578999999999999998855544
Q ss_pred hHHHHh---hhcCCcchHHHHHHHHHhC
Q 003439 656 LMSNIY---ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 656 ~l~~~y---~~~g~~~~A~~~~~~m~~~ 680 (820)
.++.+. ...|..+++...+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 443322 2456667777888877754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=66.89 Aligned_cols=131 Identities=14% Similarity=0.063 Sum_probs=79.3
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVR-PDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHY 588 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~ 588 (820)
..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|.++++...+...-.++ ...+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 34444555555555555555555442100 111 25566666777777777777777766543211111 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 589 GCMVDLFGRAGHLGMAHNFIQNM-------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 589 ~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
..+...+...|++++|.+.+++. +..+. ..++..+...+...|++++|...+++++++..
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 66777777888888887777654 11111 33667777888888999999999988876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=5.5e-05 Score=79.37 Aligned_cols=149 Identities=10% Similarity=0.007 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPR--SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 560 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 560 (820)
...+..+...|.+.|++++|...|++... ++.. .+...|+..++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788889999999999999987652 2211 1223344444433221 136777888899
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHhcCChhHH
Q 003439 561 HSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGA-CRIHGNMELG 636 (820)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~-~~~~g~~~~a 636 (820)
+.|++++|+..++...+. .| +...|..+..+|...|++++|.+.|++. .+.|+.. ++..|... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988753 44 5678888999999999999999999987 5566543 56655555 3455677888
Q ss_pred HHHHHHHhccCCCCc
Q 003439 637 AVASDRLFEVDSENV 651 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~ 651 (820)
...++++++..|+++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999999998765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00023 Score=77.48 Aligned_cols=156 Identities=11% Similarity=-0.023 Sum_probs=114.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDH----------------ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-- 585 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-- 585 (820)
+.+.|++++|++.|.++++....... ..+..+...|...|++++|.+++..+....+-.++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 45667888888888887774211110 136778899999999999999999887654433333
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc------CCC
Q 003439 586 --KHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV------DSE 649 (820)
Q Consensus 586 --~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~ 649 (820)
.+.+.+...+...|+.++|.+++++. ...+. ..++..|...+...|++++|...++++... .|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 23344445555678999999888765 22333 447888999999999999999999988753 222
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
....+..++.+|...|++++|..++++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 345788899999999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.3e-05 Score=63.81 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHH
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYV 655 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 655 (820)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677778888888888888888776 3344 56789999999999999999999999999999988 77788
Q ss_pred hHHHHhhhcCCcchHHHHHH
Q 003439 656 LMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 656 ~l~~~y~~~g~~~~A~~~~~ 675 (820)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888988888887765443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.7e-05 Score=70.16 Aligned_cols=77 Identities=10% Similarity=-0.024 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-chHHhHHHHh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENV-GYYVLMSNIY 661 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y 661 (820)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 357788888899999999999888876 3445 466899999999999999999999999999999887 4454554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=4.7e-05 Score=65.72 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHhHHhhCC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGI-KP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
.|++++|+..|+...+. +. .| +...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555421 10 12 2345556666666666666666666655 2233 3557777888888888888888
Q ss_pred HHHHHHhccCCCCcchHH
Q 003439 638 VASDRLFEVDSENVGYYV 655 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~ 655 (820)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888887765443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.70 E-value=8.1e-05 Score=81.71 Aligned_cols=64 Identities=9% Similarity=-0.041 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688899999999999999999999999999999999999999999999999999999998875
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00012 Score=61.06 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56689999999999999999999999999999999999999999999999999999999988754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=58.10 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666677777778888888777765 2233 56688888889999999999999999999999999988888888887
Q ss_pred hcC
Q 003439 663 NVG 665 (820)
Q Consensus 663 ~~g 665 (820)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=7.7e-05 Score=64.02 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=65.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 603 MAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 603 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 56688899999999999999999999999999999999999999999999999999999888754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=3.1e-05 Score=69.62 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=66.8
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGN----------MELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 455666666666655 3344 45567667776666655 46999999999999999999999999999987
Q ss_pred C-----------CcchHHHHHHHHHhCC
Q 003439 665 G-----------KWEGVDEVRSLARDRG 681 (820)
Q Consensus 665 g-----------~~~~A~~~~~~m~~~~ 681 (820)
| ++++|.+.|+++.+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998763
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=79.47 Aligned_cols=115 Identities=10% Similarity=-0.029 Sum_probs=87.9
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcc---hHH
Q 003439 594 LFGRAGHLGMAHNFIQNM---------PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFE-----VDSENVG---YYV 655 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 655 (820)
.+...|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++ +.|+++. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 2334444 899999999999999999999999886 4565544 566
Q ss_pred hHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHh
Q 003439 656 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 726 (820)
Q Consensus 656 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 726 (820)
.|+.+|..+|++++|..+++++.+.-. ..-...||...++...+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998875311 01124599998888777776655543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0002 Score=77.35 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=82.2
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcc---hHH
Q 003439 594 LFGRAGHLGMAHNFIQNM---------PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFE-----VDSENVG---YYV 655 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 655 (820)
-+.+.|++++|++++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++. .+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777766544 112333 3788888888889999999998888876 3455444 566
Q ss_pred hHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 003439 656 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 725 (820)
Q Consensus 656 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 725 (820)
.|+.+|..+|++++|..+++++.+--. ..-...||...+++..+.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999988875311 0112459999999999988888776
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00075 Score=55.10 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 614 RPDASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 614 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.+|...|..+..++...++ .++|...++++++++|+++.....++.++...|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888865555 69999999999999999999999999999999999999999999987743
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=55.90 Aligned_cols=65 Identities=9% Similarity=-0.022 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999998865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=58.32 Aligned_cols=64 Identities=8% Similarity=-0.082 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHHHhCC
Q 003439 616 DASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 616 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 681 (820)
+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 33344444444444 44555555555555443 345555556666665 566666666666655554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=63.73 Aligned_cols=102 Identities=8% Similarity=-0.063 Sum_probs=63.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 602 (820)
..+.+++++|++.+++..+ ..|+ ...|..+..++...++++.+....+ .++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~ 63 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQ 63 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHH
T ss_pred HHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHH
Confidence 3455667777777777777 3453 4466666666666665442222110 134
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCcch
Q 003439 603 MAHNFIQNM-PVRPD-ASIWGALLGACRIH-----------GNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 603 eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
+|+..|++. .+.|+ ..+|..+..+|... |++++|+..|+++++++|++..+
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 555555554 34443 34666666666655 58999999999999999987543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0014 Score=52.75 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888999999999999999999999999999999999999999999999999999998765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0034 Score=70.40 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=122.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCC----------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGL----------VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
....++|++.++++++ +.|+.. .|+.--.++.+.|+ ++++.+.++.+.+. -+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445789999999999 578765 56666666667777 99999999999864 233566788888888
Q ss_pred HHcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc------
Q 003439 596 GRAG--HLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG-NMELGAVASDRLFEVDSENVGYYVLMSNIYANV------ 664 (820)
Q Consensus 596 ~~~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~------ 664 (820)
.+.| ++++++++++++ ...| +..+|+.-..+....| ..+++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 779999999998 3344 6779999999999999 899999999999999999999999998888774
Q ss_pred --------CCcchHHHHHHHHHhC
Q 003439 665 --------GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 --------g~~~~A~~~~~~m~~~ 680 (820)
++++++.+.++++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 4567888888777654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00024 Score=76.53 Aligned_cols=81 Identities=6% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcc---hHHhHHHH
Q 003439 599 GHLGMAHNFIQNM---------PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFE-----VDSENVG---YYVLMSNI 660 (820)
Q Consensus 599 g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~ 660 (820)
|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++ +.|+++. .+..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555443 2234433 778888888888888888888888775 3454443 56678889
Q ss_pred hhhcCCcchHHHHHHHHHh
Q 003439 661 YANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 661 y~~~g~~~~A~~~~~~m~~ 679 (820)
|..+|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999888765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0059 Score=62.94 Aligned_cols=138 Identities=9% Similarity=-0.038 Sum_probs=65.7
Q ss_pred CCCCccccchHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh---cC--CHHHHH---HHHHHh
Q 003439 510 PRSSSVPWNAIISCHGI--HG---QGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH---SG--LVSEGQ---RYFHMM 575 (820)
Q Consensus 510 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g--~~~~a~---~~~~~m 575 (820)
...+...|...+.+... .+ +..+|+.+|++.++ ..|+.. .+..+.-++.. .+ .-.... +.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34567777777766432 23 34789999999999 578753 55544444431 00 000000 011100
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 576 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 576 ~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
........+...|..+.-.+...|++++|...++++ ..+|+...|..+...+...|+.++|.+.+++++.++|.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 000011223344444444444445555555555544 23344444444444455555555555555555555553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0026 Score=56.52 Aligned_cols=113 Identities=11% Similarity=-0.037 Sum_probs=90.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLG 602 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~ 602 (820)
.+++++|++.|++..+.| .|+.. |...|...+.+++|.++|+...+. -+...+..|..+|.. .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999887 34333 666777778889999999888754 356778888888888 78999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 003439 603 MAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 603 eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 648 (820)
+|.+.|++.-...+...+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987434577788888888888 8899999999999988743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.004 Score=66.95 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPDAS-IWGALLGA 626 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~ 626 (820)
|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555443211 1111 245556666666666666666665544 2345554 78888888
Q ss_pred HHhcCChhHHHHHHHHHhc-----cCCCCcchH
Q 003439 627 CRIHGNMELGAVASDRLFE-----VDSENVGYY 654 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 654 (820)
|...|++++|+.+++++++ +.|+++.+-
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999988876 457666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.046 Score=64.48 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=80.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHH
Q 003439 389 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 468 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 468 (820)
.....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHH
Confidence 34567889999999987764 467899999999999999999999998865 344555555567766666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHH
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 539 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 539 (820)
++-+.+...|. ++.-..+|.++|++++|.+++ .+.+++++|..+-+.
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 55555555442 233445566777777777766 344666777665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0029 Score=52.08 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 592 VDLFGRAGHLGMAHNFIQNM-PVRP-DAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
...+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|++...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34445555555555555544 2222 334 455555555555555555555555555555554443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0059 Score=54.15 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCce
Q 003439 614 RPDASIWGALLGACRIHG---NMELGAVASDRLFEVD-S-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 688 (820)
Q Consensus 614 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~ 688 (820)
.++..+.-.+.+++.+.+ +.++|+.+++.+++.+ | ++...+..|+-.|.+.|++++|.++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 356677777777888777 5668888888888877 6 45667777888888888888888888888765
Q ss_pred eEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCc
Q 003439 689 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 730 (820)
Q Consensus 689 s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 730 (820)
.|...+.......+.+.+.+.|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 344445555555566667666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0079 Score=64.73 Aligned_cols=98 Identities=12% Similarity=-0.048 Sum_probs=61.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPDAS-IWGA 622 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ 622 (820)
+.+.|++++|.++++...+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4445566666666655543211 1111 245566666666666666666666544 2345544 7888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCcchHHh
Q 003439 623 LLGACRIHGNMELGAVASDRLFE-----VDSENVGYYVL 656 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 656 (820)
|...|...|++++|+.+++++++ +.|+++.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88889999999999999988876 56777655443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0055 Score=50.65 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=40.7
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
+...|..+...|...|++++|++.|++.++. .|+ ...|..+..++...|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444666666666777777777777777663 443 34666666677777777777777766553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0029 Score=53.83 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=27.5
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
.|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+...
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444455555555554442 232 2344444445555555555555554443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0084 Score=62.96 Aligned_cols=393 Identities=8% Similarity=0.037 Sum_probs=224.9
Q ss_pred CChhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhh
Q 003439 77 KTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC 156 (820)
Q Consensus 77 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~ 156 (820)
-.+-+|+.|-.++.+.|.+.+|...|=+. .|...|..+|.+..+.|.+++-+..+. |.+.. .-+...=+.|+-++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~--MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ--MARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHH--TTSTT-CCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHH--HHHHH-hcccccHHHHHHHH
Confidence 34557888888888888888888776443 455567888888889999988888665 54433 23334445677677
Q ss_pred cCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC------------------------CCCcccH
Q 003439 157 RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP------------------------VRDSGSW 212 (820)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~------------------------~~~~~~~ 212 (820)
++.+.-.++-+.+ -.|++.-...+-+-+-..|.++.|.-+|..+. ..++.+|
T Consensus 127 Ak~~rL~elEefl----~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 127 AKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp HTSCSSSTTTSTT----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred HhhCcHHHHHHHH----cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 6655411100000 12444444444555555566666666665553 1367789
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHc
Q 003439 213 NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNLFVSNNLINMYAK 291 (820)
Q Consensus 213 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~ 291 (820)
-.+-.+|...+.+.-|.-.--... + .+.-+..++.-|-..|.+++-..+++..+ |++ ...-+++-|.-.|+|
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniI---v--hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHH---C--CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCchHHHHHHHhcchhc---c--cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHh
Confidence 999999999998887655443333 1 22234456777888888888777776655 332 356678888888887
Q ss_pred cCCHHHHHHHHhc----cCCC-------CchHHHHHHHHHHhCCChhhHHHH-------------HHHHHHcCCCCCcch
Q 003439 292 FGMMRHALRVFDQ----MMER-------DVVSWNSIIAAYEQSNDPITAHGF-------------FTTMQQAGIQPDLLT 347 (820)
Q Consensus 292 ~g~~~~A~~~f~~----m~~~-------d~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~pd~~t 347 (820)
-. .++-.+-++. +--| ....|.-++-.|.+..+++.|... |++...+ .+|...
T Consensus 276 Y~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~Ei 352 (624)
T 3lvg_A 276 FK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVEL 352 (624)
T ss_dssp SC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHH
T ss_pred cC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHH
Confidence 63 3333333222 2112 344688888888888887766532 1111110 122222
Q ss_pred H---------------HHHHHHHHh-------------cCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHH
Q 003439 348 L---------------VSLTSIVAQ-------------LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 399 (820)
Q Consensus 348 ~---------------~~ll~a~~~-------------~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 399 (820)
| +-+|.++.. .+++...+..+..+. -..+..+-.++-+.|....+++.
T Consensus 353 yYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq----~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 353 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ----NHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCC----CSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHH----HhhHHHHHHHHHHHHhhhhhHHH
Confidence 2 233333332 222222222222111 12244566677788888888776
Q ss_pred HHHHHhcCCCCCchH------------HH-HHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhH
Q 003439 400 ACAVFEGLPVKDVIS------------WN-TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 466 (820)
Q Consensus 400 A~~~f~~~~~~~~~~------------~~-~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~ 466 (820)
-+...+.-..=|.+. +. .-...|.+++++++++++.++ ...|.-.|...+..++.+.
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk----------DklykDAietAa~S~~~el 498 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK----------DSLYKDAMQYASESKDTEL 498 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST----------TCCTTGGGTTTTTCCCTTH
T ss_pred HHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh----------cccHHHHHHHHHHcCCHHH
Confidence 665554433223222 22 122345667777777655432 2234455667788999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003439 467 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 505 (820)
Q Consensus 467 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 505 (820)
+.++++..++.|- ...+.+.+-.+...=+++.++++
T Consensus 499 aeeLL~yFv~~g~---~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 499 AEELLQWFLQEEK---RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHHCS---THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHHcCc---hHHHHHHHHHHhhccChHHHHHH
Confidence 9999999988773 33444444444444455555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.009 Score=48.97 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-Chh-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLK-HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIH 630 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~-~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 630 (820)
....+...|++++|.+.++...+. .| +.. .+..+..+|.+.|++++|.+.|++. ...|+.. +|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 456778889999999999888754 44 446 7888888999999999999998876 3444432 3311
Q ss_pred CChhHHHHHHHHHhccCCCCc
Q 003439 631 GNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~ 651 (820)
+.++++...+++....+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 556777788887777777654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.002 Score=67.47 Aligned_cols=397 Identities=11% Similarity=0.053 Sum_probs=229.2
Q ss_pred CcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhh
Q 003439 176 WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 255 (820)
Q Consensus 176 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 255 (820)
..+.+|+.|-.++.+.|++.+|+.-| +...|...|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 34678888999999999999988877 445677889999999999999999998887666553333 34457788888
Q ss_pred cCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC------------------------CCch
Q 003439 256 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------------------RDVV 311 (820)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~d~~ 311 (820)
+.+++.+-++++. .||..-.....+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8887765443321 35555556667777788888888888876632 3667
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHH
Q 003439 312 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 391 (820)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y 391 (820)
||--+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++-..+++.-... -..-..+++-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHH
Confidence 88888888888888776654433332 1121 2223445566777777777777665522 244567788888888
Q ss_pred HhcCCHHHHHHHHh----cCCCC-------CchHHHHHHHHHHHcCChHHHHHHHHhhhhc----------CC---CCCC
Q 003439 392 AKLGIINSACAVFE----GLPVK-------DVISWNTLITGYAQNGLASEAIEVFQMMEEC----------NE---INPN 447 (820)
Q Consensus 392 ~~~g~~~~A~~~f~----~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----------~g---~~pd 447 (820)
+|-. .++-.+.++ ++.-| ....|.-++-.|.+..+++.|... |.+. .. -.+|
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN 349 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVAN 349 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSC
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcch
Confidence 8762 333333332 22222 456699999999999998877543 2210 00 0111
Q ss_pred cc---------------cHhhHHHHhhccCChhHHHHHHHHHHHh----------CCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 448 QG---------------TYVSILPAYSHVGALRQGIKIHARVIKN----------CLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 448 ~~---------------t~~~ll~a~~~~~~~~~a~~i~~~~~~~----------g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
.. -++-+|.++...=+..++.+++...-.. --..+..+-.++-+.|....+++.-
T Consensus 350 ~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 350 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp SHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 11 2334455554444444444444321100 0112344566777777777776655
Q ss_pred HHHHhhCCCCCccc------------cchH-HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003439 503 MSLFYQVPRSSSVP------------WNAI-ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 503 ~~~~~~~~~~~~~~------------~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 569 (820)
+.-.+.-..-|.+. +..+ ...|.+++++.+++++.++ .+ .|.-.+...+.+|+.+-+.
T Consensus 430 R~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elae 500 (624)
T 3lvg_A 430 RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAE 500 (624)
T ss_dssp HHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHH
T ss_pred HHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHH
Confidence 54433332222221 2221 2245566667666654321 11 1222233345566666666
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
++++-..+. | +.+.|.+.+..+...=+.+.++++
T Consensus 501 eLL~yFv~~-g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 501 ELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHH-C---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHc-C---chHHHHHHHHHHhhccChHHHHHH
Confidence 666655543 2 223333333333333355555555
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=58.64 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=70.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-cchHHhHHHHhhhc-CCcch
Q 003439 601 LGMAHNFIQNM-PVRPD---ASIWGALLGACRI-----HGNMELGAVASDRLFEVDSEN-VGYYVLMSNIYANV-GKWEG 669 (820)
Q Consensus 601 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 669 (820)
+.+|..++++. .+.|+ ...|..|...|.+ -|+.+.|++.|++++++.|+. ...++.+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44556666554 45666 5588888888888 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCCcCCc
Q 003439 670 VDEVRSLARDRGLKKTPG 687 (820)
Q Consensus 670 A~~~~~~m~~~~~~~~~~ 687 (820)
|.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876654453
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.031 Score=57.61 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=92.5
Q ss_pred CCCChhHHHHHHHHHH--hc---CCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHH----HcC-------CHHHHHHH
Q 003439 545 VRPDHITFVSLLTACS--HS---GLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFG----RAG-------HLGMAHNF 607 (820)
Q Consensus 545 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~----~~g-------~~~eA~~~ 607 (820)
.+.|...|...+.+.. .. ....+|..+|++..+ +.|+- ..|..+.-+|. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776643 33 345789999998884 47763 33433332221 111 11223332
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 608 IQNMPV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 608 ~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...+.. ..+..+|..+...+...|++++|+..++++++++| +...|..++.++.-.|++++|.+.++++...+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 233322 34677888888878888999999999999999998 57788899999999999999999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.049 Score=64.31 Aligned_cols=101 Identities=19% Similarity=0.125 Sum_probs=61.6
Q ss_pred HHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 288 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
.+..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3556788888888877663 456788888888888888888888888743 33444444445555544444
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 406 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 406 (820)
-......| -++.-...|.++|++++|.+++.+
T Consensus 730 ~~~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG-------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC-------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433 113333445555666665555433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.28 Score=41.69 Aligned_cols=138 Identities=11% Similarity=0.047 Sum_probs=88.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 606 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 606 (820)
.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-.-+.+ ..+|++.....
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHHH
Confidence 455666666666655521 2222333333233333334444444443322222 24566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCC
Q 003439 607 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683 (820)
Q Consensus 607 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 683 (820)
-+-.+. .+....+.-+.....+|.-+.-.+++..++.-+|.+++..+-++++|.+.|+..+|.++++++-++|++
T Consensus 83 C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666654 234445666778888999999999999876666668999999999999999999999999999999884
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=3.9 Score=45.69 Aligned_cols=252 Identities=8% Similarity=0.012 Sum_probs=129.1
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 456 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 456 (820)
.+....+.+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+-. .| .........++.
T Consensus 68 ~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~-~~-~~~p~~c~~l~~ 144 (618)
T 1qsa_A 68 LPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TG-KSQPNACDKLFS 144 (618)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CS-SCCCTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CC-CCCcHHHHHHHH
Confidence 333444555666777788888888887776 433444444566777788888888877777665 22 122233444555
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------------------------
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-------------------------- 510 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------------------------- 510 (820)
.+.+.|.+... .++.- ++.....|+...|..+...+.
T Consensus 145 ~~~~~g~lt~~----------------~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 145 VWRASGKQDPL----------------AYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp HHHHTTCSCHH----------------HHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHCCCCCHH----------------HHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc
Confidence 55544433221 11111 122222233333333332221
Q ss_pred -CCCccc---cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 511 -RSSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV----SLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 511 -~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++... ...-+.-+. ..+.+.|..+|......+ ..+..... .+.......+...++...+...... .
T Consensus 208 ~~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~ 282 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---S 282 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---C
T ss_pred cCCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---C
Confidence 111110 001111222 237788888888776543 22332222 2222233344345566666554322 2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-D-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
++.....-.+..-.+.|+++.|.+.|+.|+..+ + ....-=+..+....|+.++|..+++++.+ + .++|-.|
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 333333334444457789999999998885432 2 22112234466778888889888888865 3 2455544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.049 Score=44.10 Aligned_cols=67 Identities=4% Similarity=-0.038 Sum_probs=51.2
Q ss_pred CChhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 583 PHLKHYGCMVDLFGRAGH---LGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
++...+..+..++...++ .++|..++++. ...|+ ...+..+...+.+.|++++|+..++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456667777777765544 67888888776 44554 457777888889999999999999999999987
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.099 Score=43.30 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 455888899999999999999999999999999887765444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.12 Score=43.96 Aligned_cols=66 Identities=11% Similarity=-0.055 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCChh---HHHHHHHHHhccC-C-CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 615 PDASIWGALLGACRIHGNME---LGAVASDRLFEVD-S-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 615 p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+..+--.+.+++.+..+.. +++.+++.++..+ | ..-.....|+-.+.+.|++++|.+..+.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444344444444444333 2555555555544 3 22333444555566666666666666555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.53 Score=42.75 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=79.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 570 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 570 (820)
+....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|++... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888887777665 3455688888888888888888887776544 3445555666677666555
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 571 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 571 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|..+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 44333322 1 123334445567888888888877753332221 124467777777776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.11 Score=45.99 Aligned_cols=37 Identities=11% Similarity=-0.155 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.+-.|.-+|.+.|++++|++.++++++++|+|..+..
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4556777889999999999999999999998765444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.73 Score=39.88 Aligned_cols=67 Identities=4% Similarity=-0.049 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCC-cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 614 RPDASIWGALLGACRIHG---NMELGAVASDRLFEVDSEN-VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 614 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|+..+--.+.+++.+.. +..+++.+++.++...|.+ -.....|+-.|.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444445555555544 3446777777777666632 334445666677777777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.55 E-value=2.1 Score=38.74 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=80.8
Q ss_pred HHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 288 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.+...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888887766 4567788888888888888888888887642 44455555566666665555
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhh
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 438 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 438 (820)
-......| -+|.....+.-.|+++++.++|.+...- .--+......|..+.|.++..++
T Consensus 83 a~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSL-----PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHHHHHHHHcCcHHHHHHHHHHh
Confidence 55554444 1244455566677888887777665431 11111112246666777776655
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.18 Score=57.46 Aligned_cols=54 Identities=11% Similarity=0.013 Sum_probs=49.9
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
.-|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|.-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346678999999999999999999999999999999999999999999988874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.55 Score=38.61 Aligned_cols=64 Identities=8% Similarity=-0.094 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVD-------SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..-+-.|...+...|+++.|+..++++++.. +..+..+..|+.+|.+.|++++|..+++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445578888889999999999999888743 234567889999999999999999999998765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.19 Score=49.59 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=42.7
Q ss_pred CCCCC---hhHHHHHHHHHHH-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCChhHHHHHHHHHhccC
Q 003439 580 GIKPH---LKHYGCMVDLFGR-----AGHLGMAHNFIQNM-PVRPD--ASIWGALLGACRI-HGNMELGAVASDRLFEVD 647 (820)
Q Consensus 580 g~~p~---~~~~~~li~~~~~-----~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~ 647 (820)
.+.|+ ...|..|...|.+ -|+.++|.+.|++. .+.|+ ..++..+...++. .|+.+++.+.+++++...
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 34554 3455666666666 36666666666665 44553 4455555665555 377777777777777776
Q ss_pred CC
Q 003439 648 SE 649 (820)
Q Consensus 648 p~ 649 (820)
|.
T Consensus 271 p~ 272 (301)
T 3u64_A 271 PE 272 (301)
T ss_dssp GG
T ss_pred CC
Confidence 64
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.54 E-value=1.8 Score=36.74 Aligned_cols=74 Identities=9% Similarity=-0.124 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGM---AHNFIQNM-PVR-P--DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~e---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
|+..+--.+..++.+.....+ ++.++++. ... | .....-.|.-++.+.|+++.|++.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554444 55555554 212 3 1123445667899999999999999999999998766544
Q ss_pred h
Q 003439 656 L 656 (820)
Q Consensus 656 ~ 656 (820)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.89 E-value=1.1 Score=38.30 Aligned_cols=46 Identities=7% Similarity=0.077 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhccCCCC-cchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 634 ELGAVASDRLFEVDSEN-VGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+|+.+++.++..+|.. -..+..|+-.+.+.|++++|.++.+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555555544422 23333445555555555555555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.66 E-value=9.8 Score=32.48 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=31.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
-+......|.-++-.+++.++... .+|+......+.+||.+.|+..++.+++.+.-++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344445555555555555554332 3555555556666666666666666666555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.01 E-value=1 Score=39.36 Aligned_cols=52 Identities=8% Similarity=-0.091 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
+|.++|+++|+.++.+...-+..+...+..-.+.|+.+.|++++......+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 6777777777777665444445556666666777888888888777776543
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=86.41 E-value=46 Score=37.19 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhC
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQS 222 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 222 (820)
++|--+.|||++++|.++.++... .-...+-..+..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 456667799999999998877642 1124677777777743
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=81.53 E-value=11 Score=33.00 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCCCchHHHHHHHHHHHcCCh------HHHHHHHHhhhhcCCCCCCccc----HhhHH---HHhhccCChhHHHHHHHHH
Q 003439 408 PVKDVISWNTLITGYAQNGLA------SEAIEVFQMMEECNEINPNQGT----YVSIL---PAYSHVGALRQGIKIHARV 474 (820)
Q Consensus 408 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~~g~~pd~~t----~~~ll---~a~~~~~~~~~a~~i~~~~ 474 (820)
...|..+|-..+.-.-+.|++ ++..++|++... .++|+... |.-+. ..+...+++++|+++|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345778888888888888988 888888887765 46665321 11110 0112235666666666666
Q ss_pred HHh
Q 003439 475 IKN 477 (820)
Q Consensus 475 ~~~ 477 (820)
++.
T Consensus 87 ~~~ 89 (161)
T 4h7y_A 87 RAN 89 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.16 E-value=6.9 Score=31.18 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+.+|-+|-.. +.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555555555555443 222222223346678999999999999999999998877553 567777777777777666
Q ss_pred CCCCChhHH
Q 003439 544 GVRPDHITF 552 (820)
Q Consensus 544 g~~p~~~t~ 552 (820)
| .|....|
T Consensus 99 g-~p~~q~F 106 (116)
T 2p58_C 99 Q-DPRIQTF 106 (116)
T ss_dssp C-CHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 4444444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=77 Score=35.19 Aligned_cols=251 Identities=15% Similarity=0.093 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCC
Q 003439 179 FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 258 (820)
Q Consensus 179 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (820)
..-+.-+..+.+.+++....+.+.. +..+...-.....+....|+..+|......+-..|.. .......++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCC
Confidence 3345556667778888888887776 4334444445666777888888888877777655432 3344455555555444
Q ss_pred ChHH--HHHHHHHHHHhC-----------CCccH-HHHHHHHHHHHccCCHHHHHHHHhccCCCCchH---HHHHHHHHH
Q 003439 259 NILS--GLLIHLYIVKHG-----------LEFNL-FVSNNLINMYAKFGMMRHALRVFDQMMERDVVS---WNSIIAAYE 321 (820)
Q Consensus 259 ~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~---~~~li~~~~ 321 (820)
.+.. ..+=...+...| +.++. .....++..+.+-..+ ....... .++... ...-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 4322 111112222222 11111 1122233222222111 2222111 111111 111122223
Q ss_pred hCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH----hcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCH
Q 003439 322 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA----QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 397 (820)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~ 397 (820)
+ .+++.|...|......+ ..+......+-...+ ..+....+...+...... ..+..+..-.+..-.+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 37789999998886544 223333333333333 223133344444443322 22222333444555678999
Q ss_pred HHHHHHHhcCCCCC--chHH-HHHHHHHHHcCChHHHHHHHHhhhh
Q 003439 398 NSACAVFEGLPVKD--VISW-NTLITGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 398 ~~A~~~f~~~~~~~--~~~~-~~li~~~~~~g~~~~A~~l~~~m~~ 440 (820)
+.|...|+.|+... ..-| -=+..++.+.|+.++|..+|..+..
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999998642 1212 1234466788999999999998854
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.28 E-value=50 Score=32.96 Aligned_cols=135 Identities=12% Similarity=0.152 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHH----HHHHHHcCCCCCcchHHHHHHHH
Q 003439 280 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF----FTTMQQAGIQPDLLTLVSLTSIV 355 (820)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~a~ 355 (820)
..|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.++++|..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3566677778888999998887643 23345566776655554 44445667888887777777776
Q ss_pred HhcCcc-----hhhhhHHHHHHHhCC-cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHc
Q 003439 356 AQLNDC-----RNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 425 (820)
Q Consensus 356 ~~~~~~-----~~a~~i~~~~~~~g~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 425 (820)
.....- ........+-.+.|. ..-|+.....+...|.+.|++.+|+..|-.-...|...+..++.-+.+.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 654321 122223333333331 2246778888899999999999999888633222455555555444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.81 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.76 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.71 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.42 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.21 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.12 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.02 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.87 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.62 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.5 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.43 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.98 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.58 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.99 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 87.88 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.3e-19 Score=193.43 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=182.5
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 496 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 496 (820)
........+....+...+.+... ..|+. ..+..+...+...|+.+.|...+..+++... .+...+..+...|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 216 (388)
T d1w3ba_ 141 LGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred ccccccccchhhhhHHHHHHhhc---cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhcc
Confidence 33334444555555555554443 23332 2333444455556666666666666555432 2455667777778888
Q ss_pred CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHH
Q 003439 497 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 497 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
|++++|...|++.. ..+...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|.+.+
T Consensus 217 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 294 (388)
T d1w3ba_ 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888877655 44555577788888899999999999999988 56754 58888999999999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 573 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 573 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
+..... .+.+...+..+...|.+.|++++|.+.+++. ...|+ ..+|..+...+...|++++|+..++++++++|++
T Consensus 295 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 295 NTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred Hhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 988753 4456678889999999999999999999986 56675 5589999999999999999999999999999999
Q ss_pred cchHHhHHHHhhhcCC
Q 003439 651 VGYYVLMSNIYANVGK 666 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~ 666 (820)
+.++..|+++|.+.|+
T Consensus 373 ~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 373 ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999998885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.4e-19 Score=188.03 Aligned_cols=349 Identities=13% Similarity=0.029 Sum_probs=257.5
Q ss_pred HHHccCCHHHHHHHHhccCC--C-CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhh
Q 003439 288 MYAKFGMMRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNS 364 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 364 (820)
.+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++..+.
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------------- 62 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------------------- 62 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------
Confidence 34445555555555555432 2 3445555555555556666666655555442
Q ss_pred hhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHhhhhc
Q 003439 365 RSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPV---KDVISWNTLITGYAQNGLASEAIEVFQMMEEC 441 (820)
Q Consensus 365 ~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 441 (820)
.|.+..++..+...|.+.|++++|...+..... .+...+..........+....+.........
T Consensus 63 ------------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (388)
T d1w3ba_ 63 ------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ- 129 (388)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-
T ss_pred ------------CCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 234455666677777777777777777765542 2333444445555556666666666555544
Q ss_pred CCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccc
Q 003439 442 NEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 518 (820)
Q Consensus 442 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 518 (820)
. ..................+....+........... +.+...+..+...+...|++++|...+++.. +.+...|.
T Consensus 130 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T d1w3ba_ 130 Y-NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp H-CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred c-ccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHH
Confidence 2 22333334444555666777777777777776654 3356778888899999999999999998765 45566789
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGR 597 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~ 597 (820)
.+...+...|++++|+..+++....+ ..+...+..+..++...|++++|.+.|+...+ +.| +...+..+...|.+
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHH
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999853 33456788888999999999999999999874 345 46788999999999
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 598 AGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 598 ~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
.|+.++|.+.++.. ..+.+...+..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|...++
T Consensus 284 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999877 2345677999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 003439 676 LARDR 680 (820)
Q Consensus 676 ~m~~~ 680 (820)
++.+.
T Consensus 364 ~al~l 368 (388)
T d1w3ba_ 364 EAIRI 368 (388)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 98764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.4e-12 Score=134.88 Aligned_cols=240 Identities=14% Similarity=0.031 Sum_probs=160.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003439 417 TLITGYAQNGLASEAIEVFQMMEECNEINPN-QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK 495 (820)
Q Consensus 417 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 495 (820)
.....+.+.|++++|+..|++..+ ..|+ ..++..+..++...|+++.|...+..+++... -+...+..+...|..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccc
Confidence 345566777777777777777766 4554 33455555666666666666666666665432 234555555566666
Q ss_pred cCCHHHHHHHHhhCCCCCc---cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 496 CGRIDDAMSLFYQVPRSSS---VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
.|++++|.+.+++....+. ..+........ ..+.......+..+...+...++.+.+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 6666666665554431111 10100000000 000001111222334556678888888
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 573 HMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 573 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
....+...-.++..++..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 877754334445678888999999999999999999886 3445 46689999999999999999999999999999999
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.++..|+.+|.+.|++++|.+.+++..+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.8e-12 Score=130.72 Aligned_cols=263 Identities=13% Similarity=0.069 Sum_probs=192.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhcc
Q 003439 386 AVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHV 461 (820)
Q Consensus 386 ~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~ 461 (820)
.....|.+.|++++|...|+... ..+..+|..+...|...|++++|+..|++..+ +.|+. ..+..+...+...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE---LKPDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc---ccccccccccccccccccc
Confidence 35667889999999999999865 33677899999999999999999999999887 56654 5566777889999
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHH
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQML 541 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 541 (820)
|++++|.+.+..+.+...... ......... ....+.......+..+...+...+|.+.|.+.+
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYA-HLVTPAEEG----------------AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchH-HHHHhhhhh----------------hhhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999887542211 000000000 001111222223344556677888999999888
Q ss_pred HcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-H
Q 003439 542 DEGV-RPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-A 617 (820)
Q Consensus 542 ~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~ 617 (820)
+... .++...+..+...+...|++++|...++..... .| +...|..+...|.+.|++++|.+.+++. ...|+ .
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 7421 123457778888999999999999999988754 34 4678889999999999999999999886 44554 5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH-----------hHHHHhhhcCCcchHH
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV-----------LMSNIYANVGKWEGVD 671 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-----------~l~~~y~~~g~~~~A~ 671 (820)
.+|..+..+|...|++++|+..|+++++++|++...+. .+..++...|+++.+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 68999999999999999999999999999998776443 3555666667766554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=4.5e-08 Score=101.03 Aligned_cols=257 Identities=12% Similarity=0.055 Sum_probs=166.5
Q ss_pred HHHHcCChHHHHHHHHhhhhcCCCCCCc------ccHhhHHHHhhccCChhHHHHHHHHHHHhCC--C---CchhHHHHH
Q 003439 421 GYAQNGLASEAIEVFQMMEECNEINPNQ------GTYVSILPAYSHVGALRQGIKIHARVIKNCL--C---FDVFVATCL 489 (820)
Q Consensus 421 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~---~~~~~~~~l 489 (820)
.+...|++++|++++++... ..|+. ..+..+...+...|++++|...+..+.+... . .....+..+
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~---~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALE---ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHh---hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455555555555555544 22321 1233344455555666666555555443211 0 012334455
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-------CCCc----cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVP-------RSSS----VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVS 554 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~-------~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ 554 (820)
...|...|++..|...+.+.. .+.. ..+..+...+...|+++.+...+.+........+ ..++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 566777777777777665432 1111 1244566777888999999999988887432222 234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-----DASIWGAL 623 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-----~~~~~~~l 623 (820)
....+...+...++...+........-... ...+..+...+...|+.++|.+.+++. ...| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 666778889999998888776654322222 234566677888999999999999876 2222 23466778
Q ss_pred HHHHHhcCChhHHHHHHHHHhc------cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 624 LGACRIHGNMELGAVASDRLFE------VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..++...|++++|...+++++. ..|+....+..++.+|...|++++|.+.+++..+.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8889999999999999998874 45666778889999999999999999999887653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.2e-08 Score=101.90 Aligned_cols=221 Identities=11% Similarity=0.141 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
.++.+-..+.+.+.+++|+++++++.+ +.|+..+ .|+.....+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~---lnP~~~~----------------------------------a~~~r~~~l 87 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYT----------------------------------VWHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHH----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH---HCCCChH----------------------------------HHHHHHHHH
Confidence 455566667777888888888888877 5665443 333344444
Q ss_pred HhcC-CHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 003439 494 GKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 494 ~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 568 (820)
...| ++++|...++... +.+..+|+.+...+...|++++|++.++++++ +.|+ ...|..+...+.+.|++++|
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHH
Confidence 4443 3555555555443 44555566666777777777778888888777 4554 45777777788888888888
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 003439 569 QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGH------LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~------~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
++.++.+.+. .| +...|+.+..++.+.|. +++|.+.+.++ ...| +...|+.+...+.. ...+++...
T Consensus 166 l~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~ 241 (315)
T d2h6fa1 166 LQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNL 241 (315)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHH
T ss_pred HHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHH
Confidence 8888877743 44 44566666666666554 57788777665 4445 56788888776554 446888899
Q ss_pred HHHHhccCCCCcch--HHhHHHHhhhc--CCcchHHHHHHHH
Q 003439 640 SDRLFEVDSENVGY--YVLMSNIYANV--GKWEGVDEVRSLA 677 (820)
Q Consensus 640 ~~~~~~~~p~~~~~--~~~l~~~y~~~--g~~~~A~~~~~~m 677 (820)
++++.++.|+.... +..++.+|... +..+.+...+++.
T Consensus 242 ~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 242 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999888875444 44577777554 5555666555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=9.2e-09 Score=104.75 Aligned_cols=192 Identities=8% Similarity=0.064 Sum_probs=160.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHG-QGDKALNFFRQMLDEGVRPDH-ITFVSLLT 557 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 557 (820)
...++-+...+.+.+..++|+++++++. +.+...|+....++...| ++++|+..+++.++ +.|+. .+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhH
Confidence 3456666777888999999999999877 556667999998888876 58999999999999 56764 58999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGN-- 632 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~-- 632 (820)
.+...|++++|++.+..+.+. .| +...|..+..++.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence 999999999999999999853 55 5788999999999999999999999987 4555 56689888877776654
Q ss_pred ----hhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 633 ----MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 633 ----~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+++|+..+.++++++|++...+..++.++...| .+++.+.++...+.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 578999999999999999999999999887765 57888888777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=1.1e-08 Score=100.98 Aligned_cols=199 Identities=9% Similarity=-0.064 Sum_probs=118.1
Q ss_pred cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHh
Q 003439 450 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGI 526 (820)
Q Consensus 450 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 526 (820)
++..+...+.+.|++++|.+.+...++... .++.+++.+..+|.+.|++++|.+.|++.. +.+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 344444556666666666666666666532 356677777888888888888888887765 3445567777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC----CH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG----HL 601 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----~~ 601 (820)
.|++++|++.|++.++. .|+. .....+..++...+..+....+...... ..+....++ ++..+.... ..
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHH
Confidence 88888888888888874 4543 3333333344455544444444444332 223222222 222222111 22
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 602 GMAHNFIQNM-PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+.+...+... ...|+. .+|..+...+...|++++|+..+++++..+|++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222111 112332 36777888888889999999999999888887765443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=1e-07 Score=96.55 Aligned_cols=185 Identities=11% Similarity=0.124 Sum_probs=140.2
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CC-ccccchHHHHHHhcCChHHHHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SS-SVPWNAIISCHGIHGQGDKALNFFR 538 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~ 538 (820)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.. .+ ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4577888888888765556677788888888999999999999987652 22 2358888888888999999999999
Q ss_pred HHHHcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 003439 539 QMLDEGVRPD-HITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM----P 612 (820)
Q Consensus 539 ~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~ 612 (820)
++++. .|+ ...|...... +...|+.+.|..+|+.+...+ +.+...+...++.+.+.|++++|+.+|++. +
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 98885 343 3344433332 344688999999999888653 334567888889999999999999999875 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 613 VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 613 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
..|+ ...|...+.--..+|+.+.+..+++++.++-|++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 3333 45888888888889999999999998888877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=1.5e-08 Score=100.05 Aligned_cols=192 Identities=13% Similarity=0.026 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 559 (820)
.++..+...|.+.|++++|.+.|++.. +.+..+|+.+..+|.+.|++++|++.|+++++ +.|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 466677889999999999999999876 56778899999999999999999999999999 5675 45788899999
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh----cCCh
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPDASIWGALLGACRI----HGNM 633 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~----~g~~ 633 (820)
...|++++|.+.|+...+. .| +......+...+.+.+..+.+..+..... ..++...++. +..+.. .+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 9999999999999988754 34 33344444455556665555554444331 1222222222 222211 1223
Q ss_pred hHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 634 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
+.+...+.......|+....+..|+.+|...|++++|.+.+++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 334444444445667777788899999999999999999999988653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=2.4e-07 Score=95.26 Aligned_cols=287 Identities=8% Similarity=-0.028 Sum_probs=182.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCC-----chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCC----cccHhhH
Q 003439 387 VVDMYAKLGIINSACAVFEGLP---VKD-----VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPN----QGTYVSI 454 (820)
Q Consensus 387 li~~y~~~g~~~~A~~~f~~~~---~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~l 454 (820)
....+...|++++|.+.|++.. +.+ ...++.+...|...|++++|+..|++......-.++ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3445566777777777776432 111 234566667777788888888888776541111111 1233444
Q ss_pred HHHhhccCChhHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC----ccccch
Q 003439 455 LPAYSHVGALRQGIKIHARVIKN----CLCFD---VFVATCLVDMYGKCGRIDDAMSLFYQVP----RSS----SVPWNA 519 (820)
Q Consensus 455 l~a~~~~~~~~~a~~i~~~~~~~----g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~----~~~~~~ 519 (820)
...+...|++..+...+...... +.... ...+..+...|...|+++.|...+.... ..+ ...+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 55667778888887777665432 11111 2345566778888899999888887654 111 122444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC--ChhHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEG--VRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP--HLKHYGCM 591 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~l 591 (820)
+...+...++..++...+.+..... .... ...+..+...+...|++++|...+........-.+ ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 5566778888999888888766521 1111 12455566678889999999999877653211111 12445667
Q ss_pred HHHHHHcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---------chH
Q 003439 592 VDLFGRAGHLGMAHNFIQNM-------PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENV---------GYY 654 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~ 654 (820)
...|...|++++|.+.+++. +..|+. .+|..+...+...|+.++|+..+++++++.+... ...
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 88899999999999988765 334443 3788888999999999999999999988654321 112
Q ss_pred HhHHHHhhhcCCcchHHHH
Q 003439 655 VLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 655 ~~l~~~y~~~g~~~~A~~~ 673 (820)
..+...+...++.+++.+-
T Consensus 338 ~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHH
Confidence 2344455666777777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=3.2e-09 Score=109.54 Aligned_cols=228 Identities=10% Similarity=-0.038 Sum_probs=162.7
Q ss_pred HcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhcc--CChhHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCH
Q 003439 424 QNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHV--GALRQGIKIHARVIKNCLCFDVFV-ATCLVDMYGKCGRI 499 (820)
Q Consensus 424 ~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~~-~~~li~~y~~~g~~ 499 (820)
..|++++|+.+|+...+ ..|+... +.....++... ++.+++...+..+++.... +... +..+...+...|..
T Consensus 85 ~~~~~~~al~~~~~~l~---~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 85 SAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHH---hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhcccc
Confidence 34557888888888877 5565443 33444444444 4578888888888876543 3333 34455677788999
Q ss_pred HHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 500 DDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 500 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
++|...++... +.+...|+.+...+.+.|++++|...+++..+ +.|+.. .+...+...+..+++...+....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999887 34556688888899999998888766665554 223322 23334455667777877777766
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 577 EEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 577 ~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
.. -.++...+..++..+...|+.++|.+.+.+. +..|+. .+|..+...+...|+.++|+..++++++++|++..+|
T Consensus 236 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 LG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred Hh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 42 3344556667778888889999999988876 555644 4888899999999999999999999999999888888
Q ss_pred HhHHHHhh
Q 003439 655 VLMSNIYA 662 (820)
Q Consensus 655 ~~l~~~y~ 662 (820)
..|...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=3.3e-09 Score=109.46 Aligned_cols=244 Identities=6% Similarity=-0.090 Sum_probs=176.5
Q ss_pred cCChHHHHHHHHhhhhcCCCCCCcccHh----hHHHH-------hhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 425 NGLASEAIEVFQMMEECNEINPNQGTYV----SILPA-------YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~----~ll~a-------~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
.+..++|++++++..+ ..|+..+.- .++.. +...|.++++..+++.+++... .+...+..+..++
T Consensus 42 ~~~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~ 117 (334)
T d1dcea1 42 GELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 117 (334)
T ss_dssp TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHH
Confidence 3445889999998877 678775531 12222 2334557788888888887653 3555666666666
Q ss_pred HhcC--CHHHHHHHHhhCC---CCCccccchH-HHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 003439 494 GKCG--RIDDAMSLFYQVP---RSSSVPWNAI-ISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVS 566 (820)
Q Consensus 494 ~~~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 566 (820)
...+ ++++|...++++. +++...|... ...+...|.+++|+..++++++ ..|+ ...|..+..++...|+++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHH
Confidence 6655 5889999988875 4455556544 4677778999999999999888 4564 457888888899999888
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 644 (820)
+|...+...... .|+ . ..+...+...+..+++...+... ...++...+..++..+...|+.++|...+.+..
T Consensus 196 ~A~~~~~~~~~~---~~~--~-~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV---LLK--E-LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH---HHH--H-HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh---HHH--H-HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 877665544422 121 1 12334455667777777776654 223344567777888888999999999999999
Q ss_pred ccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 645 EVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 645 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.+|++..++..++++|...|++++|.+.++++.+.
T Consensus 270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998775
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=3.5e-07 Score=92.52 Aligned_cols=180 Identities=9% Similarity=0.047 Sum_probs=141.9
Q ss_pred cCCHHHHHHHHhhCC----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHH
Q 003439 496 CGRIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD--HITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~ 569 (820)
.+..++|..+|++.. +.+...|...+..+...|+.++|..+|+++++. .|. ...|...+..+.+.|++++|.
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHcCChHHHH
Confidence 345678888888753 445566888899999999999999999999984 553 346889999999999999999
Q ss_pred HHHHHhHHhhCCCC-ChhHHHHHHHHH-HHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 570 RYFHMMQEEFGIKP-HLKHYGCMVDLF-GRAGHLGMAHNFIQNM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 570 ~~~~~m~~~~g~~p-~~~~~~~li~~~-~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
++|+.+.+. .| +...|....... ...|+.+.|..+|+.+ . .+.+...|...+..+...|+.+.|+.+|++++.
T Consensus 155 ~i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 155 MIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999998743 33 344554444443 3468999999999987 2 233567999999999999999999999999999
Q ss_pred cCCCCcc----hHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 646 VDSENVG----YYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 646 ~~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..|.++. .|......-...|+.+.+..+.+++.+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8775543 5666666677889999999999988765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6e-07 Score=75.81 Aligned_cols=89 Identities=8% Similarity=0.063 Sum_probs=63.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcch
Q 003439 592 VDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 669 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 669 (820)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45566667777777777665 3333 455777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhC
Q 003439 670 VDEVRSLARDR 680 (820)
Q Consensus 670 A~~~~~~m~~~ 680 (820)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=4.4e-07 Score=85.19 Aligned_cols=106 Identities=7% Similarity=-0.110 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003439 547 PDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALL 624 (820)
Q Consensus 547 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll 624 (820)
|+...+....+.+...|++++|+..|....+. -+.+...|..+..+|.+.|++++|++.|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44445555555555556666666655555432 1123344555555555555555555555544 33443 33555555
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
.+|...|++++|+..++++++++|++...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 555555555555555555555555444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.9e-06 Score=78.69 Aligned_cols=139 Identities=9% Similarity=-0.035 Sum_probs=96.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 568 (820)
...+...|+++.|.+.|+++.+++...|..+..+|...|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34567788999999999988888888888899999999999999999999988 45654 5788888888999999999
Q ss_pred HHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 569 QRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
.+.|+..... .+++.. .|. ..| ...+++ ..++..+..++...|++++|.+.+++++++
T Consensus 90 ~~~~~kAl~~--~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHT--TTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9888877642 122110 000 000 011111 224555666677777777777777777777
Q ss_pred CCCC
Q 003439 647 DSEN 650 (820)
Q Consensus 647 ~p~~ 650 (820)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 6653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.4e-06 Score=78.13 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=67.6
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcch
Q 003439 592 VDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 669 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 669 (820)
...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|++..++..++.+|...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 45666777777777777766 3344 455777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 003439 670 VDEVRSLARDR 680 (820)
Q Consensus 670 A~~~~~~m~~~ 680 (820)
|...+++....
T Consensus 97 A~~~~~~a~~~ 107 (159)
T d1a17a_ 97 ALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88887777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=3.4e-06 Score=70.94 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=85.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
-.+.+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 355677788888888888887743 34 4567888888888888888888888876 3344 5678999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
++++|+..++++++++|+++.++..+.++-+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988888877643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.28 E-value=3.9e-07 Score=76.32 Aligned_cols=88 Identities=10% Similarity=-0.020 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCc
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKW 667 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 667 (820)
.+...+.+.|++++|...|++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788889999999999887 4456 4669999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHH
Q 003439 668 EGVDEVRSLA 677 (820)
Q Consensus 668 ~~A~~~~~~m 677 (820)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=1.4e-06 Score=81.63 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 660 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 660 (820)
|+...+...+..|.+.|++++|++.|+++ ...| +..+|..+..+|...|++++|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44455555566666777777777777654 3333 445666666667777777777777777777777766677777777
Q ss_pred hhhcCCcchHHHHHHHHHh
Q 003439 661 YANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 661 y~~~g~~~~A~~~~~~m~~ 679 (820)
|...|++++|...++++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777766666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=3e-06 Score=78.52 Aligned_cols=88 Identities=16% Similarity=0.007 Sum_probs=81.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHH
Q 003439 592 VDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 671 (820)
...+...|++++|++.|+++. +|+..+|..+...+...|++++|+..|+++++++|+++..|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 456778999999999999874 6788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 003439 672 EVRSLARDR 680 (820)
Q Consensus 672 ~~~~~m~~~ 680 (820)
+.+++..+.
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=8.8e-06 Score=81.02 Aligned_cols=191 Identities=8% Similarity=-0.041 Sum_probs=127.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hhH
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-D----HIT 551 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t 551 (820)
|....++|..+|++++|.+.|.+... .+ ..+|+.+..+|.+.|++++|++.+++..+.-... + ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 33445678888888888888876641 22 2358888899999999999999999876621111 1 235
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------CH-
Q 003439 552 FVSLLTACS-HSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-------DA- 617 (820)
Q Consensus 552 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-------~~- 617 (820)
+..+...|. ..|++++|.+.++...+......+ ..++..+...|.+.|++++|.+.+++. ...| ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666666674 469999999999887643221221 345788899999999999999999886 1111 11
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-----HHhHHHHhhh--cCCcchHHHHHHH
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY-----YVLMSNIYAN--VGKWEGVDEVRSL 676 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~~--~g~~~~A~~~~~~ 676 (820)
..+..++-.+...|+.+.|...++++.+++|..... ...|+.+|.. .+++++|...++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 133445556778899999999999999999864332 3345555554 3456777776653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.1e-05 Score=72.99 Aligned_cols=111 Identities=8% Similarity=-0.063 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIH 630 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 630 (820)
.+....+.+...|++++|+..|..........+..... .......+ ...+|+.+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------EAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------HHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------HHhhhchh-------HHHHHHHHHHHHHhh
Confidence 34445556777777777777777766443222211000 00000000 123556666777778
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|++++|+..++++++++|+++.++..++.+|...|++++|...++.+.+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888777664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=5.2e-06 Score=74.28 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=89.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 631 (820)
..+.|.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.|+++ ...|+ ..+|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345677888888888888887753 34 4567788888888888888888888876 44554 569999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhh--hcCCcchHHHH
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYA--NVGKWEGVDEV 673 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~A~~~ 673 (820)
++++|+..++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988877765543 33445555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.3e-06 Score=73.78 Aligned_cols=132 Identities=8% Similarity=-0.014 Sum_probs=98.4
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 596 (820)
+......+.+.|++++|+..|++.++. -|....+ .+.-......+. ...|+.+..+|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~------------~~~~~~~~~~~~--------~~~~~nla~~y~ 73 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF------------SNEEAQKAQALR--------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC------------CSHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc------------chHHHhhhchhH--------HHHHHHHHHHHH
Confidence 445566788999999999999999884 2221110 000001111111 135677888999
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
+.|++++|++.+++. ...| +..+|..+..++...|++++|+..|+++++++|+++.....+..+....+...+.
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 4556 5669999999999999999999999999999999999999998887776665544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.09 E-value=1.8e-05 Score=69.97 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+|..+...|.+.|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467778888999999999999999999999999999999999999999999999999988765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=5.9e-06 Score=69.77 Aligned_cols=106 Identities=9% Similarity=-0.067 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCCH---HHHHHHH
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGH---LGMAHNFIQNM-PVRPDA---SIWGALL 624 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~---~~eA~~~~~~m-~~~p~~---~~~~~ll 624 (820)
..+++.+...+++++|.+.|+..... .| +..++..+..+|.+.++ +++|+++++++ ...|+. .+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35677778888888888888887743 34 55677778888876554 45688888876 444433 3788899
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
.+|...|++++|++.++++++++|++..+...+..+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999887776665443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=4.1e-06 Score=70.80 Aligned_cols=93 Identities=10% Similarity=-0.019 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCCC--cchHHhHHHH
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH---GNMELGAVASDRLFEVDSEN--VGYYVLMSNI 660 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 660 (820)
...+++.+...+++++|++.|++. ...| +..++..+..++.+. ++.++|+.+++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346778888999999999999987 4445 566888899888764 45567999999999988754 3478899999
Q ss_pred hhhcCCcchHHHHHHHHHhC
Q 003439 661 YANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 661 y~~~g~~~~A~~~~~~m~~~ 680 (820)
|.+.|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=1.9e-05 Score=78.49 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=129.4
Q ss_pred CHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 498 RIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYF 572 (820)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 572 (820)
++++|.++|.+ ....|...|++++|++.|.+..+. +-.|+ ..+|..+..+|...|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46777777654 467889999999999999998773 11222 247888999999999999999999
Q ss_pred HHhHHhhCCCCC----hhHHHHHHHHHHH-cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003439 573 HMMQEEFGIKPH----LKHYGCMVDLFGR-AGHLGMAHNFIQNM-------PVRPD-ASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 573 ~~m~~~~g~~p~----~~~~~~li~~~~~-~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
+...+.+.-..+ ...+..+...|.. .|++++|.+.+++. +..+. ..+|..+...+...|++++|+..
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987653222222 3456666777755 59999999999876 11111 33688889999999999999999
Q ss_pred HHHHhccCCCCcc-------hHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 640 SDRLFEVDSENVG-------YYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 640 ~~~~~~~~p~~~~-------~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++++....|.+.. .+..++..|...|+++.|.+.+++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999998877653 2345666788899999999999887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=2e-05 Score=67.25 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-------HHhHH
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY-------YVLMS 658 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 658 (820)
+-.+.+.|.+.|++++|++.|++. ...| +..+|..+..+|.+.|++++|+..++++++++|++... |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888889999999988876 3444 57799999999999999999999999999999987764 45577
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 003439 659 NIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.++...+++++|.+.+++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 7888889999999999887643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=1.8e-05 Score=71.37 Aligned_cols=64 Identities=8% Similarity=-0.057 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|..+...+.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4477888888999999999999999999999999999999999999999999999999998875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=3.9e-05 Score=69.03 Aligned_cols=93 Identities=6% Similarity=-0.059 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
.|+.+..+|.+.|++++|+..+++. ...| +..+|..+..++...|++++|+..++++++++|++..+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5667788899999999999999886 4444 5669999999999999999999999999999999999999888887777
Q ss_pred CCcch-HHHHHHHHHh
Q 003439 665 GKWEG-VDEVRSLARD 679 (820)
Q Consensus 665 g~~~~-A~~~~~~m~~ 679 (820)
+...+ ..+++..|-+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 65543 4455555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.87 E-value=0.0014 Score=63.20 Aligned_cols=225 Identities=12% Similarity=-0.007 Sum_probs=132.6
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhc----cCChhHHHHHHHHHHHhCCCCchhHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVA 486 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~ 486 (820)
|+..+..+...+.+.+++++|++.|++..+ .| |...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~-~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--------
Confidence 344566666667777788888888877766 33 22222222222222 234444444444444433
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--
Q 003439 487 TCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHG----IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-- 560 (820)
Q Consensus 487 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-- 560 (820)
+...+..+...+. ...+.+.|...+++..+.|.. .....+...+.
T Consensus 69 --------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~ 119 (265)
T d1ouva_ 69 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDG 119 (265)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHC
T ss_pred --------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCC
Confidence 1222222222222 234566777777777665421 12222222222
Q ss_pred --hcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 003439 561 --HSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLGACRI----H 630 (820)
Q Consensus 561 --~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~ 630 (820)
.......+...+..... ..+...+..|...|.. ..+...+...++......+...+..|...+.. .
T Consensus 120 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 120 KVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccc
Confidence 23456666666655442 2345566667777765 34666777777765333466666666666654 5
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHHHhCCC
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 682 (820)
.+.+.|+..|+++.+.. ++..+..|+.+|.+ ..+.++|.+++++..+.|.
T Consensus 196 ~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 196 KNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 68999999999998874 57788899999986 4489999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.82 E-value=9.6e-05 Score=66.32 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 618 SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+|..+..+|...|++++|+..++++++++|++..+|..++.+|...|++++|...++++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677788899999999999999999999999999999999999999999999999998865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.77 E-value=8.5e-05 Score=65.46 Aligned_cols=124 Identities=7% Similarity=-0.099 Sum_probs=87.3
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 596 (820)
+......+.+.|++.+|+..|++.+.. .|..... .-......... .....|+.+..+|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKN--------IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhh--------HHHHHHhhHHHHHH
Confidence 445556677778888888888777762 2211100 00000000000 01246777889999
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
+.|++++|++.+++. ...| +..+|..+..++...|++++|+..|+++++++|++..+...+..+.
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999886 4556 5669999999999999999999999999999999988877776554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=4e-05 Score=69.04 Aligned_cols=82 Identities=6% Similarity=-0.065 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
...|..+..+|.+.|++++|+..++++ .+.|+ ..+|..+..++...|++++|+..++++++++|++..+...|..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456777889999999999999999887 66665 5599999999999999999999999999999999998888877765
Q ss_pred hcCC
Q 003439 663 NVGK 666 (820)
Q Consensus 663 ~~g~ 666 (820)
+...
T Consensus 157 ~l~~ 160 (169)
T d1ihga1 157 KIKA 160 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=6.8e-06 Score=88.72 Aligned_cols=91 Identities=7% Similarity=-0.138 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
.+..+...+.+.|+.++|...+++.- .++ ..++..|+..+...|++++|+..|+++++++|++...|..|+.+|...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ---------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 34444444555555555544433220 111 1244445555555555555555555555555555555555555555555
Q ss_pred CcchHHHHHHHHH
Q 003439 666 KWEGVDEVRSLAR 678 (820)
Q Consensus 666 ~~~~A~~~~~~m~ 678 (820)
+..+|...+.+..
T Consensus 201 ~~~~A~~~y~ral 213 (497)
T d1ya0a1 201 DHLTTIFYYCRSI 213 (497)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.01 Score=58.52 Aligned_cols=277 Identities=11% Similarity=0.089 Sum_probs=156.3
Q ss_pred cHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhc
Q 003439 177 DVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCAR 256 (820)
Q Consensus 177 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (820)
|..--..+.+.+-+.|.++.|..++..+. -|..++..+.+.++++.|++++.+.. +..+|..+..+|..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence 33333445566667888999999987654 48888899999999999999887652 56788888888887
Q ss_pred CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccC---CCCchHHHHHHHHHHhCCChhhHHHHH
Q 003439 257 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM---ERDVVSWNSIIAAYEQSNDPITAHGFF 333 (820)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~ 333 (820)
......+ .+.......+......++..|-..|..++...+++... ..+...++-++..|++.+ +++-++.+
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 7665443 22222333455556778999999999999999998653 346667888999888864 44444444
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch
Q 003439 334 TTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI 413 (820)
Q Consensus 334 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 413 (820)
+.. + +......++..|...+- +..++-.|.+.|.+++|..+.-.-+ +++.
T Consensus 156 ~~~---s---~~y~~~k~~~~c~~~~l-----------------------~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~ 205 (336)
T d1b89a_ 156 ELF---W---SRVNIPKVLRAAEQAHL-----------------------WAELVFLYDKYEEYDNAIITMMNHP-TDAW 205 (336)
T ss_dssp HHH---S---TTSCHHHHHHHHHTTTC-----------------------HHHHHHHHHHTTCHHHHHHHHHHST-TTTC
T ss_pred Hhc---c---ccCCHHHHHHHHHHcCC-----------------------hHHHHHHHHhcCCHHHHHHHHHHcc-hhhh
Confidence 433 1 12233344455543332 3446667777777777765543321 1122
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-----------cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCc
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-----------TYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 482 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-----------t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 482 (820)
.....+..+.+..+.+...++.....+ ..|+.. .-.-++.-+.+.+++...+.+++.....+ +
T Consensus 206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~---~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~ 279 (336)
T d1b89a_ 206 KEGQFKDIITKVANVELYYRAIQFYLE---FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---N 279 (336)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHHH---HCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---C
T ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH---cCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---h
Confidence 223344455555555544444433333 122211 11233444445555555566665554444 3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLF 506 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~ 506 (820)
..+.++|.+.|...++.+.-++..
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHHH
Confidence 356777777777777655544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.55 E-value=0.00014 Score=65.74 Aligned_cols=119 Identities=8% Similarity=-0.055 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003439 554 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNM 633 (820)
Q Consensus 554 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 633 (820)
.........|++++|.+.|.....- .+....- + +...........-++. -....|..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~----~-~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE---WRGPVLD----D-LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG----G-GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc----c-CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 3445678889999999998887743 2321100 0 0000011111111111 1234778899999999999
Q ss_pred hHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh-----CCCCc
Q 003439 634 ELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD-----RGLKK 684 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~~~~ 684 (820)
++|+..++++++++|.+...|..|+.+|...|++++|.+.|+++.+ .|+.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999988743 46644
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.50 E-value=0.00023 Score=58.73 Aligned_cols=86 Identities=8% Similarity=-0.071 Sum_probs=48.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGR 597 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~ 597 (820)
+...+.+.|++++|+..|++.+. ..|+ ..+|..+..++.+.|++++|+..|+...+. .| +...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHH
Confidence 34445556666666666666666 3453 345555666666666666666666655532 33 24455555555555
Q ss_pred cCCHHHHHHHHHh
Q 003439 598 AGHLGMAHNFIQN 610 (820)
Q Consensus 598 ~g~~~eA~~~~~~ 610 (820)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5555555555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=3.4e-05 Score=83.09 Aligned_cols=112 Identities=8% Similarity=-0.075 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA-SIWGALLGAC 627 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~ 627 (820)
..+..+...+.+.|+.++|...+...... .| ...+..+.+++...|++++|...+++. .+.|+. ..|+.|...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 35555566666667776666655544321 11 135566677777777777777777665 445543 4777777777
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
...|+..+|+..|.+++.++|+.+.++..|..++.+..
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777776666665443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.44 E-value=0.016 Score=55.45 Aligned_cols=228 Identities=10% Similarity=-0.081 Sum_probs=129.1
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhcCCC-CCchHHHHHHHHHHH----cCChHHHHHHHHhhhhcCCCCCCcccHhhH
Q 003439 380 DVIIGNAVVDMYAKLGIINSACAVFEGLPV-KDVISWNTLITGYAQ----NGLASEAIEVFQMMEECNEINPNQGTYVSI 454 (820)
Q Consensus 380 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 454 (820)
|+..+..|...+.+.|++++|.+.|+...+ .|..++..|...|.. ..+...|...+..... .+. |.. ...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~-~~~-~~a--~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LNY-SNG--CHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTC-HHH--HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc-ccc-cch--hhcc
Confidence 345667777788889999999999997753 366677677777766 5678888888888766 332 221 1222
Q ss_pred HHH----hhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCCh
Q 003439 455 LPA----YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 530 (820)
Q Consensus 455 l~a----~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 530 (820)
... .....+.+.|...++...+.|... ....+...+.... ......
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~---------------------------~~~~~~ 126 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGK---------------------------VVTRDF 126 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCC---------------------------cccchh
Confidence 112 223456677777777777665321 1122222222100 011233
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHH
Q 003439 531 DKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLG 602 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~ 602 (820)
..|...+.+.... .+...+..|...+.. ..+...+..+++...+. .+......|..+|.. ..+.+
T Consensus 127 ~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 127 KKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchh
Confidence 4444444444432 233444444444443 34455555555554432 234444445555544 45778
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 003439 603 MAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 603 eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 648 (820)
+|...|++....-++..+..|...|.. ..|.++|.+.|+++.+..+
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 888888776323355666666666653 3378888888888877654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.43 E-value=6.1e-05 Score=65.68 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=59.2
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 596 GRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRI----------HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
-|.+.+++|.+.|++. ...| +..+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444555566555554 2333 33355555555443 2446789999999999999999999999999988
Q ss_pred cCC-----------cchHHHHHHHHHhC
Q 003439 664 VGK-----------WEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~-----------~~~A~~~~~~m~~~ 680 (820)
.|+ +++|.+.++++.+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 765 57777888777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=2.1e-05 Score=68.78 Aligned_cols=124 Identities=9% Similarity=-0.019 Sum_probs=71.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 602 (820)
|-+.+.+++|++.|++.++ +.|+. ..+..+..++...+++..+.+- .+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~--------------------------~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDA--------------------------KQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHH--------------------------HHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHH--------------------------HHHHH
Confidence 3445667888888888888 45654 4666666666544333221110 11223
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-----------ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcch
Q 003439 603 MAHNFIQNM-PVRPD-ASIWGALLGACRIHG-----------NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 669 (820)
Q Consensus 603 eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 669 (820)
+|.+.|+++ .+.|+ ..+|..+..+|...| +++.|.+.|+++++++|++..++..|.... +
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------k 131 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------K 131 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------T
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------H
Confidence 333333333 22332 334444444444332 468899999999999999888777776543 5
Q ss_pred HHHHHHHHHhCCC
Q 003439 670 VDEVRSLARDRGL 682 (820)
Q Consensus 670 A~~~~~~m~~~~~ 682 (820)
|.+++.+..++|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 5566666655554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.37 E-value=0.079 Score=51.96 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
.+.+++.+.|...++++.-++.+++-
T Consensus 281 ~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 46677777777777766666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.33 E-value=0.00028 Score=62.24 Aligned_cols=64 Identities=8% Similarity=-0.061 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-----------VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|+.+..+|...|++++|...+++++++.|.. ...+..++.+|...|++++|...++++.+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888888887654321 225677899999999999999999998764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0006 Score=54.05 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM--------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
.+...+.+.|++++|.+.|++. ...++ ..+++.|..++.+.|++++|+..++++++++|+++.++..+..
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 3455555666666665555543 11233 4588899999999999999999999999999999988877654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0016 Score=54.90 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=53.6
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMV 592 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li 592 (820)
.+...|.+.|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|++.++.+.+...-.+. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3455666777777777777777774 443 456666777777777777777777776532111111 12344455
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 003439 593 DLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~ 610 (820)
+.+...+++++|.+.|++
T Consensus 87 ~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.99 E-value=0.0028 Score=55.40 Aligned_cols=94 Identities=13% Similarity=-0.035 Sum_probs=57.9
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCC----------hhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC----
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPH----------LKHYGCMVDLFGRAGHLGMAHNFIQNM--------PVRPD---- 616 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~----------~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~---- 616 (820)
..+.|++++|++.|++..+...-.|+ ...|+.+..+|.+.|++++|.+.+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445555555555555433222221 234556666666666666666655543 12222
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 617 -ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 617 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
..+|..+..+|...|++++|+..|++++++.|+...
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 225677888999999999999999999998775443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0011 Score=52.35 Aligned_cols=61 Identities=8% Similarity=-0.089 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSEN-------VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+-.++..+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4467888999999999999999999876654 345778999999999999999999999876
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.93 E-value=0.0055 Score=54.77 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=43.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHH----hhCCCCChhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQE----EFGIKPHLKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~ 587 (820)
|..+...+...|++++|+..++++++ +.| +...|..++.++...|+.++|++.|+.+.+ +.|+.|...+
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 33455556666666666666666666 345 344666677777777777777776666532 3577776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.85 E-value=0.0011 Score=63.82 Aligned_cols=126 Identities=10% Similarity=-0.025 Sum_probs=89.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHH
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~ 602 (820)
.+.|++++|+..+++.++ ..|+ ...+..+...++..|++++|.+.++...+ +.|+. ..+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 457999999999999998 4675 46888899999999999999999998874 35653 44445555555555555
Q ss_pred HHHHHHHhC--CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 603 MAHNFIQNM--PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 603 eA~~~~~~m--~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
++..-.... ..+|+. ..+......+...|+.++|...++++.++.|+.+..+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 544332221 123332 34444556678889999999999999999998776544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.58 E-value=0.00076 Score=64.92 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=86.8
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 636 (820)
.+.|++++|++.++...+. .| +...+..+..+|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4579999999999998853 45 6789999999999999999999999987 55665 44666666665544444333
Q ss_pred HHHHHHH-hccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 637 AVASDRL-FEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 637 ~~~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.....+. ...+|++...+...+.++...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3322221 1234545556667788899999999999999998775
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=2.4 Score=43.01 Aligned_cols=107 Identities=15% Similarity=0.002 Sum_probs=59.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~ 463 (820)
...-+..+.+.++++.....+..-+ .+...-.....+..+.|+.++|...+...-......|+
T Consensus 75 r~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~---------------- 137 (450)
T d1qsaa1 75 QSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN---------------- 137 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT----------------
T ss_pred HHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch----------------
Confidence 3444566777888877776665432 23443445667777889988888888777652223332
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP 510 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 510 (820)
....++....+.|.. +...+-.-++.....|+...|..+...+.
T Consensus 138 --~c~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~ 181 (450)
T d1qsaa1 138 --ACDKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMP 181 (450)
T ss_dssp --HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCC
Confidence 223334444443322 22333333444455566666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.30 E-value=0.7 Score=36.70 Aligned_cols=139 Identities=11% Similarity=0.054 Sum_probs=87.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 605 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 605 (820)
..|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-.-+.+. .++++....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~vv 76 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 76 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHHH
Confidence 456667777777666653 122233333333333444445555555444333333 244444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCC
Q 003439 606 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683 (820)
Q Consensus 606 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 683 (820)
.-+-.+. .+....+--+....++|.-+.-.+++..+++-+.-+++....++++|.+.|...++-++..++-++|++
T Consensus 77 ~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 77 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 4444442 233344556677788888888888989888866668888999999999999999999999999998874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.16 Score=40.92 Aligned_cols=65 Identities=5% Similarity=-0.043 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCCCc-chHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 616 DASIWGALLGACRIH---GNMELGAVASDRLFEVDSENV-GYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...+.=.+.+++.++ .+.++|+.++++++..+|.+. ..+..|+-.|.+.|++++|.+.++.+.+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 333444444444433 234566666666666665443 34455666666666666666666666544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.99 E-value=0.39 Score=39.56 Aligned_cols=50 Identities=8% Similarity=-0.032 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHHHhCCC
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 682 (820)
.|.++|.+.++++.+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 35667777777776543 45666777777766 3467778888888777664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.33 E-value=2.3 Score=33.72 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=40.8
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 581 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~ 581 (820)
+.-+....+.|.-++-.++++.+.+. -+|++.....+.+||.+.|...++.+++.+.-++ |+
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 33455566677777777777776664 3667777777777777777777777777776654 54
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.64 E-value=0.61 Score=37.42 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 600 HLGMAHNFIQNM-PVRP-DA-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 600 ~~~eA~~~~~~m-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+++++..++++. ...| +. ..|-.|.-+|.+.|+++.|++.++++++++|++..+..
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 344555555554 1233 32 36667788899999999999999999999998765433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=87.88 E-value=2.6 Score=34.15 Aligned_cols=109 Identities=10% Similarity=-0.051 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHc----cCCHHHHH
Q 003439 224 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAK----FGMMRHAL 299 (820)
Q Consensus 224 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~ 299 (820)
++++|++.|++.-+.|.. .....+. .....+.++|...+....+.| +......|-.+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 456677777776665522 2222221 223346667777777776666 33344445555543 34556666
Q ss_pred HHHhccCC-CCchHHHHHHHHHHh----CCChhhHHHHHHHHHHcC
Q 003439 300 RVFDQMME-RDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAG 340 (820)
Q Consensus 300 ~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 340 (820)
+.|+...+ .++.+...|...|.. ..+.++|+.+|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 66665533 344444444444443 335556666666655544
|