Citrus Sinensis ID: 003442

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------82

MTTSSNAVAIVPCSSFTCLCRSASKLYGEVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLNAIDTRIVENAQTTATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRVQDWPCFLSRALNRLMAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLELNSNPAMRSSFSGKEKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKKTPAIKKCKGPPQTPLTMSQRPLSSALASDGRDFEDSHTSIKSSRHLGSAVKQLTPTDLQSPLVASKNSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRSNSVRNLSSSQQNMQMSSFVRTTDSSLDDSLGRTCIKRHGIASRLTELIKMVKLLFRNTSDTLYSQSSCLPASLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQTPS

ccccccccEEEcccccccccccccccccccEEccccccccEEEcccccccccccccHHHHHHHHHHccccccccccccccccEEcccccEEEccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccEEEccccHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccHHHHccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEEEccccccEEEEEEEEEEEEEEccccccccccccccEEEEEEEEEcccccEEEEEccccccc

ccccccEEEEEccccccEEcHHHHHHHccccEccccccEEEEEEEcccccccccHHHHHHHHHHHHccccEHccccccccccccccccHHHEccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccHcHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHccccccHHHHHccHHHHHHHHHcccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHccccccccHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEHHEHccccccccccccccEEEEEEEEEcccccEEEEEcEEEccc

mttssnavaivpcssftclcrsasklygevkvsglgfgverafvrvsnpccsrrthVATLRYRLNAIDTRIVENaqttatatveipvscyqiigvpnqaeKDEIVKSVMDLKRAEieegytmdafMSRQDVLMDVRDKllfepeyagnirenippkpslkiQWAWLPAALCLLQEVGEEKLVLDIGRAalqhpnakpyahDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSkvslgnmplLSQIEESLEELAPActlellgmphspenaERRRGAIAALRELIRQGldvetscrvqdwpCFLSRALNRLMAAEVvdllpwddlaitrknkkslesqnqrvVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLelnsnpamrssfsgkekkeisgakpsvEMWLKDAVlsvfpdtqdcspslvnffkgekktpaikkckgppqtpltmsqrplssalasdgrdfedshtsikssrhlgsavkqltptdlqsplvasknsngnnvspssaqlerglglqrsKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRSNSVRNLSSSQQNMQMSSfvrttdsslddslgrtcikRHGIASRLTELIKMVKLLFRNtsdtlysqssclpaslstsniavtqrpmpLEEAEALVKQWQAIKaealgpnhevhslsEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQAdiishggvgeIAEIEAVLEEAAELvdesqpknpnyyssyKIRYVLrkkddgtwrfckgdiqtps

mttssnavaivpcssFTCLCRSASKLYGEVKVSGLGFGVERAfvrvsnpccsrrthvatlryRLNAIDTRIVENaqttatatveipvSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEPEyagnirenippkPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIRQgldvetscrvqDWPCFLSRALNRLMAAEVVDLLPWDDLAITRknkkslesqnqrVVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQqlelnsnpamrssfsgkeKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFfkgekktpaikkckgppqtpltmsqRPLSSALASDGRDFEDSHTSIKSSRHLGSAVKQLTPTDLQSPLVAsknsngnnvspssaqlerglGLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRSNSVRNLSSSQQNMQMSsfvrttdsslddsLGRTCIKRHGIASRLTELIKMVKLLFRNTSDTLYSQSSCLPASLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAElvdesqpknpnyyssykirYVLRKKDDGTWrfckgdiqtps

MTTSSNAVAIVPCSSFTCLCRSASKLYGEVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLNAIDTRIVENAQTTATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPllsqieesleelAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRVQDWPCFLSRALNRLMAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLELNSNPAMRSSFSGKEKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKKTPAIKKCKGPPQTPLTMSQRPLSSALASDGRDFEDSHTSIKSSRHLGSAVKQLTPTDLQSPLVASKNSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRSNSVRNLsssqqnmqmssFVRTTDSSLDDSLGRTCIKRHGIASRLTELIKMVKLLFRNTSDTLYSQSSCLPASLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGeiaeieavleeaaelvDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQTPS

******AVAIVPCSSFTCLCRSASKLYGEVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLNAIDTRIVENAQTTATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLEELAPACTLELLG************GAIAALRELIRQGLDVETSCRVQDWPCFLSRALNRLMAAEVVDLLPWDDLAITRKN******QNQRVVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTE*************************************EMWLKDAVLSVFPDTQDCSPSLVNFFK****************************************************************************************GLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGI*******************************LGRTCIKRHGIASRLTELIKMVKLLFRNTSDTLYSQSSCLP*******I************EALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELV********NYYSSYKIRYVLRKKDDGTWRFCKG******

**********VPCSSFTCLCRSASKLYGEVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLNA****************VEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEP*************PSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAAL**********DFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVS****PLLSQIEESLEELAPACTLELLGM*************IAALRELIRQGLDV*****VQDWPCFLSRALNRLMAAEVVDLLPWDDLAITRK*********QRVVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAV***************************GAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEK*****************************************************************************************************************C********************************************RTCIKRHGIASRLTELIKMVK***********************************EEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQA**********IAEIEAVLEEAAELV*********YYSSYKIRYVLRKKDDGTWRFCKGDIQT**

********AIVPCSSFTCLCRSASKLYGEVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLNAIDTRIVENAQTTATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRVQDWPCFLSRALNRLMAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLELNSNPA*****************PSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKKTPAIK*******************************************AVKQLTPTDLQSPLVASK******************GLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRSN**************************DSLGRTCIKRHGIASRLTELIKMVKLLFRNTSDTLYSQSSCLPASLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQTPS

****SNAVAIVPCSSFTCLCRSASKLYGEVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLNAIDTRIVENAQTTATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRVQDWPCFLSRALNRLMAAEVVDLLPWDDLAIT*********QNQRVVIDFNCFYIALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLELNSNPAMRSSFSGKEKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKKTPAIKKCK*****************************************************************************************************************************************RTTDSSLDDSLGRTCIKRHGIASRLTELIKMVKLLFRNTS**********************QRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQ***

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		819	2.2.26 [Sep-21-2011]
Q8VY16		819	Plastid division protein	yes	no	0.894	0.894	0.603	0.0
Q9FIG9		801	Protein ACCUMULATION AND	no	no	0.815	0.833	0.247	9e-33

>sp\|Q8VY16\|CDP1_ARATH Plastid division protein CDP1, chloroplastic OS=Arabidopsis thaliana GN=CDP1 PE=1 SV=2	Back alignment and function desciption

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/757 (60%), Positives = 581/757 (76%), Gaps = 24/757 (3%)

Query: 70  RIVENAQT------TATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMD 123
            +V+NA +       +T+T+E+PV+CYQ+IGV  QAEKDE+VKSV++LK+ + EEGYTM+
Sbjct: 74  HVVDNAPSRTSSLAASTSTIELPVTCYQLIGVSEQAEKDEVVKSVINLKKTDAEEGYTME 133

Query: 124 AFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVL 183
           A  +RQD+LMDVRDKLLFE EYAGN++E I PK  L+I WAWLP ALCLLQEVG+EKLVL
Sbjct: 134 AAAARQDLLMDVRDKLLFESEYAGNLKEKIAPKSPLRIPWAWLPGALCLLQEVGQEKLVL 193

Query: 184 DIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSL 243
           DIGRAAL++ ++KPY HD  LSMALAECAIAK AFE N VSQGFEALARAQ  L+SKV+L
Sbjct: 194 DIGRAALRNLDSKPYIHDIFLSMALAECAIAKAAFEVNKVSQGFEALARAQSFLKSKVTL 253

Query: 244 GNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRV 303
           G + LL+QIEESLEELAP CTL+LLG+P +PENAERRRGAIAALREL+RQGL VE SC++
Sbjct: 254 GKLALLTQIEESLEELAPPCTLDLLGLPRTPENAERRRGAIAALRELLRQGLSVEASCQI 313

Query: 304 QDWPCFLSRALNRLMAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYIALIAHV 363
           QDWPCFLS+A++RL+A E+VDLLPWDDLAITRKNKKSLES NQRVVIDFNCFY+ L+ H+
Sbjct: 314 QDWPCFLSQAISRLLATEIVDLLPWDDLAITRKNKKSLESHNQRVVIDFNCFYMVLLGHI 373

Query: 364 ALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLELNS 423
           A+GFS +Q E I+KAKTIC+CLIASE +DLKFEEAFC FLL QG+EAEA+EKL+QLE NS
Sbjct: 374 AVGFSGKQNETINKAKTICECLIASEGVDLKFEEAFCSFLLKQGSEAEALEKLKQLESNS 433

Query: 424 NPAMRSSFSGKEKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKKTPAIKK 483
           + A+R+S  GKE +  S A PS+E WL ++VL+ FPDT+ CSPSL NFF+ EKK P  KK
Sbjct: 434 DSAVRNSILGKESRSTS-ATPSLEAWLMESVLANFPDTRGCSPSLANFFRAEKKYPENKK 492

Query: 484 CKGPPQTPLTMSQRPLSSALASDGRDFEDSHTSIKSSRHLGSAVKQLTPTDLQSPLVASK 543
              P       +QRPLS+               + SS+HL +AV+QLTPTDLQSP+V++K
Sbjct: 493 MGSPSIMNHKTNQRPLSTT------------QFVNSSQHLYTAVEQLTPTDLQSPVVSAK 540

Query: 544 NSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRS 603
           N++  + S  S QL+R LG+ ++K+W+ WL+  + I R++  A+LGC +F ++KLSGIRS
Sbjct: 541 NNDETSASMPSVQLKRNLGVHKNKIWDEWLSQSSLIGRVSVVALLGCTVFFSLKLSGIRS 600

Query: 604 NSVRNLS---SSQQNMQMSSFVRTTDSSLDDSLGRTCIKRHGIASRLTELIKMVKLLFRN 660
             ++++    S++ + +  SF+  T+S  +       + R+GI   +  LI M+K+    
Sbjct: 601 GRLQSMPISVSARPHSESDSFLWKTESG-NFRKNLDSVNRNGIVGNIKVLIDMLKMHCGE 659

Query: 661 TSDTLYSQSSCLPA-SLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSE 719
             D LY +SS   A SLS S   + +RPM  EEAE LV+QW+ +KAEALGP H+V+SLSE
Sbjct: 660 HPDALYLKSSGQSATSLSHSASELHKRPMDTEEAEELVRQWENVKAEALGPTHQVYSLSE 719

Query: 720 ALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAEL 779
            LDESMLVQW+ LA  A+A+SCYWRFVLL L ++QA I   G  GE AEIEA+LEEAAEL
Sbjct: 720 VLDESMLVQWQTLAQTAEAKSCYWRFVLLHLEVLQAHIFEDGIAGEAAEIEALLEEAAEL 779

Query: 780 VDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQ 816
           VDESQPKN  YYS+YKIRY+L+K++DG W+FC+ DIQ
Sbjct: 780 VDESQPKNAKYYSTYKIRYILKKQEDGLWKFCQSDIQ 816

Component of the plastid division machinery required for PDV1 localization to constriction sites. Involved in chloroplast division site placement. Seems to inhibit FtsZ assembly, functioning as an antagonistic regulator of FtsZ dynamics against ARC6.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FIG9\|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		819
224125646		742	predicted protein [Populus trichocarpa]	0.901	0.994	0.683	0.0
225457506		822	PREDICTED: plastid division protein CDP1	0.892	0.889	0.685	0.0
224120520		886	predicted protein [Populus trichocarpa]	0.962	0.889	0.618	0.0
356561814		812	PREDICTED: plastid division protein CDP1	0.958	0.966	0.588	0.0
356529422		812	PREDICTED: plastid division protein CDP1	0.975	0.983	0.578	0.0
255546906		788	conserved hypothetical protein [Ricinus	0.893	0.928	0.639	0.0
22331175		819	ARC6H-like protein [Arabidopsis thaliana	0.894	0.894	0.603	0.0
297830564		835	hypothetical protein ARALYDRAFT_318673 [	0.893	0.876	0.598	0.0
18377660		819	unknown protein [Arabidopsis thaliana]	0.894	0.894	0.602	0.0
357499725		821	hypothetical protein MTR_6g077830 [Medic	0.909	0.907	0.603	0.0

>gi\|224125646\|ref\|XP_002329683.1\| predicted protein [Populus trichocarpa] gi\|222870591\|gb\|EEF07722.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1038 bits (2683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/742 (68%), Positives = 603/742 (81%), Gaps = 4/742 (0%)

Query: 78  TATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRD 137
           T+TATVEIPV+CYQ++GVP++AEKDEIV+SVM LK AE+EEGYTMDA MSRQD+LMDVRD
Sbjct: 2   TSTATVEIPVTCYQLVGVPDKAEKDEIVRSVMQLKNAEVEEGYTMDAVMSRQDLLMDVRD 61

Query: 138 KLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKP 197
           KLLFEPEYAGN+R+ IPPK SL+I  AWLP ALCLLQEVGE+KLVLDIG+AALQHP+AKP
Sbjct: 62  KLLFEPEYAGNVRDKIPPKSSLRIPLAWLPGALCLLQEVGEDKLVLDIGQAALQHPDAKP 121

Query: 198 YAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLE 257
           Y HD LLSMALAECAIAK+ FE+N VS GFEALARAQCLLRSK+SLG M LLSQIEESLE
Sbjct: 122 YVHDVLLSMALAECAIAKIGFERNKVSFGFEALARAQCLLRSKISLGKMALLSQIEESLE 181

Query: 258 ELAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRVQDWPCFLSRALNRL 317
           ELAPACTLELLG PHSPENAERRRGAIAALREL+RQGLD+ETSCRVQDWP FLS+ALNRL
Sbjct: 182 ELAPACTLELLGTPHSPENAERRRGAIAALRELLRQGLDLETSCRVQDWPSFLSQALNRL 241

Query: 318 MAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYIALIAHVALGFSSRQIELISK 377
           MA E+VDLLPWDDL + RKNKKSLESQNQRVVIDFNCFY+ L+AH+ALGFSS+Q ELI+K
Sbjct: 242 MATEIVDLLPWDDLVLIRKNKKSLESQNQRVVIDFNCFYVVLLAHIALGFSSKQTELINK 301

Query: 378 AKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLELNSNPAMRSSFSGKEKK 437
           AKTIC+CLIASESIDLKFEEAFCLFLLGQG + +AVEKLQQL+ NSNPA ++   GKE K
Sbjct: 302 AKTICECLIASESIDLKFEEAFCLFLLGQGNQDQAVEKLQQLQSNSNPAAQNLVPGKEIK 361

Query: 438 EISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKKTPAIKKCKGPPQTPLTMSQR 497
           ++SG KPS+E WLKD+VL VF DT+DCSPSLVNFF GEK+    KK + P Q   TMS R
Sbjct: 362 DVSGVKPSLETWLKDSVLLVFSDTRDCSPSLVNFFGGEKRVIGSKKSRVPAQATPTMSHR 421

Query: 498 PLSSALASDGRDFEDSHTSIKSSRHLGSAVKQLTPTDLQSPLVASKNSNGNNVSPSSAQL 557
           PLS  +A    D  +S   + SS+H  SAVKQL+PTDLQS L+ ++N +G+N +  S QL
Sbjct: 422 PLSD-IAMKRMDSGESRRYMNSSQHFRSAVKQLSPTDLQSSLILTENGSGSNSNEPSVQL 480

Query: 558 ERGLGLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRSNSVR---NLSSSQQ 614
           +R +G    + WESWL   + + +I+F AVLGCI+F+  K+SG+    +R   NL S + 
Sbjct: 481 KREIGAHNRRTWESWLQHADVVRKISFVAVLGCIVFITFKMSGMGLRRIRVASNLMSDRT 540

Query: 615 NMQMSSFVRTTDSSLDDSLGRTCIKRHGIASRLTELIKMVKLLFRNTSDTLYSQSSCLPA 674
           ++  SS    TDS LD ++    I+  GI  R+ +L+ M+K+ + N  DT   QSS L A
Sbjct: 541 SIGTSSLAWKTDSFLDRNVHPVYIRGSGITGRMRKLLSMLKMQYGNQLDTKKLQSSRLAA 600

Query: 675 SLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALAD 734
           S+S S   V+++ MP+EEAEALV  WQAIKAEALGP ++VHSLSE LDESML QW+ LA+
Sbjct: 601 SISPSMETVSRKQMPVEEAEALVNHWQAIKAEALGPWYQVHSLSEVLDESMLAQWQDLAE 660

Query: 735 AAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSY 794
           AAKA+SCYWRFVLLQL+I++ADI S G   EIAEIE +LEEAAELVDESQ KNPNYYS+Y
Sbjct: 661 AAKAQSCYWRFVLLQLSILRADIFSDGYGLEIAEIEVLLEEAAELVDESQQKNPNYYSTY 720

Query: 795 KIRYVLRKKDDGTWRFCKGDIQ 816
           K  YVL+++DDG+WRFC+ DIQ
Sbjct: 721 KTLYVLKRQDDGSWRFCESDIQ 742

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225457506\|ref\|XP_002269313.1\| PREDICTED: plastid division protein CDP1, chloroplastic [Vitis vinifera] gi\|296087989\|emb\|CBI35272.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224120520\|ref\|XP_002318349.1\| predicted protein [Populus trichocarpa] gi\|222859022\|gb\|EEE96569.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356561814\|ref\|XP_003549173.1\| PREDICTED: plastid division protein CDP1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|356529422\|ref\|XP_003533291.1\| PREDICTED: plastid division protein CDP1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|255546906\|ref\|XP_002514511.1\| conserved hypothetical protein [Ricinus communis] gi\|223546410\|gb\|EEF47911.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi|22331175|ref|NP_188549.2| ARC6H-like protein [Arabidopsis thaliana] gi|327507743|sp|Q8VY16.2|CDP1_ARATH RecName: Full=Plastid division protein CDP1, chloroplastic; AltName: Full=ARC6-homolog protein; AltName: Full=Protein CHLOROPLAST DIVISION SITE POSITIONING 1; Short=AtCDP1; AltName: Full=Protein PARALOG OF ARC6; Flags: Precursor gi|332642682|gb|AEE76203.1| ARC6H-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297830564\|ref\|XP_002883164.1\| hypothetical protein ARALYDRAFT_318673 [Arabidopsis lyrata subsp. lyrata] gi\|297329004\|gb\|EFH59423.1\| hypothetical protein ARALYDRAFT_318673 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18377660\|gb\|AAL66980.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357499725\|ref\|XP_003620151.1\| hypothetical protein MTR_6g077830 [Medicago truncatula] gi\|355495166\|gb\|AES76369.1\| hypothetical protein MTR_6g077830 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		819
TAIR\|locus:2094143		819	PARC6 "paralog of ARC6" [Arabi	0.967	0.967	0.545	8.3e-225
TAIR\|locus:2162341		801	ARC6 "AT5G42480" [Arabidopsis	0.466	0.476	0.244	2.4e-23
UNIPROTKB\|Q55559		714	sll0169 "Sll0169 protein" [Syn	0.597	0.684	0.234	2.7e-09

TAIR\|locus:2094143 PARC6 "paralog of ARC6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
 Identities = 449/823 (54%), Positives = 573/823 (69%)

Query:    10 IVPCSSFTCLC--RSASKLYG--EVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLN 65
             ++P S   C    RS S +    E+++SGL   V            S R      R RLN
Sbjct:     9 VLPSSCLLCGISNRSTSFVVDRPELQISGL-LVVRSESGEFFGSGLSLRRFQREGRRRLN 67

Query:    66 AID--TRIVENAQT------TATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIE 117
             A      +V+NA +       +T+T+E+PV+CYQ+IGV  QAEKDE+VKSV++LK+ + E
Sbjct:    68 AAGGGIHVVDNAPSRTSSLAASTSTIELPVTCYQLIGVSEQAEKDEVVKSVINLKKTDAE 127

Query:   118 EGYTMDAFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVG 177
             EGYTM+A  +RQD+LMDVRDKLLFE EYAGN++E I PK  L+I WAWLP ALCLLQEVG
Sbjct:   128 EGYTMEAAAARQDLLMDVRDKLLFESEYAGNLKEKIAPKSPLRIPWAWLPGALCLLQEVG 187

Query:   178 EEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237
             +EKLVLDIGRAAL++ ++KPY HD  LSMALAECAIAK AFE N VSQGFEALARAQ  L
Sbjct:   188 QEKLVLDIGRAALRNLDSKPYIHDIFLSMALAECAIAKAAFEVNKVSQGFEALARAQSFL 247

Query:   238 RSKVSLGNMPXXXXXXXXXXXXAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDV 297
             +SKV+LG +             AP CTL+LLG+P +PENAERRRGAIAALREL+RQGL V
Sbjct:   248 KSKVTLGKLALLTQIEESLEELAPPCTLDLLGLPRTPENAERRRGAIAALRELLRQGLSV 307

Query:   298 ETSCRVQDWPCFLSRALNRLMAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYI 357
             E SC++QDWPCFLS+A++RL+A E+VDLLPWDDLAITRKNKKSLES NQRVVIDFNCFY+
Sbjct:   308 EASCQIQDWPCFLSQAISRLLATEIVDLLPWDDLAITRKNKKSLESHNQRVVIDFNCFYM 367

Query:   358 ALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQ 417
              L+ H+A+GFS +Q E I+KAKTIC+CLIASE +DLKFEEAFC FLL QG+EAEA+EKL+
Sbjct:   368 VLLGHIAVGFSGKQNETINKAKTICECLIASEGVDLKFEEAFCSFLLKQGSEAEALEKLK 427

Query:   418 QLELNSNPAMRSSFSGKEKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKK 477
             QLE NS+ A+R+S  GKE +  S A PS+E WL ++VL+ FPDT+ CSPSL NFF+ EKK
Sbjct:   428 QLESNSDSAVRNSILGKESRSTS-ATPSLEAWLMESVLANFPDTRGCSPSLANFFRAEKK 486

Query:   478 TPAIKKCKGPPQTPLTMSQRPLSSALASDGRDFEDSHTSIKSSRHLGSAVKQLTPTDLQS 537
              P  KK   P       +QRPLS+        F      + SS+HL +AV+QLTPTDLQS
Sbjct:   487 YPENKKMGSPSIMNHKTNQRPLSTT------QF------VNSSQHLYTAVEQLTPTDLQS 534

Query:   538 PLVASKNSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVK 597
             P+V++KN++  + S  S QL+R LG+ ++K+W+ WL+  + I R++  A+LGC +F ++K
Sbjct:   535 PVVSAKNNDETSASMPSVQLKRNLGVHKNKIWDEWLSQSSLIGRVSVVALLGCTVFFSLK 594

Query:   598 LSGIRSNSVRNLXXXXXX---XXXXXFVRTTDSSLDDSLGRTCIKRHGIASRLTELIKMV 654
             LSGIRS  ++++              F+  T+S  +       + R+GI   +  LI M+
Sbjct:   595 LSGIRSGRLQSMPISVSARPHSESDSFLWKTESG-NFRKNLDSVNRNGIVGNIKVLIDML 653

Query:   655 KLLFRNTSDTLYSQSSCLPA-SLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHE 713
             K+      D LY +SS   A SLS S   + +RPM  EEAE LV+QW+ +KAEALGP H+
Sbjct:   654 KMHCGEHPDALYLKSSGQSATSLSHSASELHKRPMDTEEAEELVRQWENVKAEALGPTHQ 713

Query:   714 VHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGXXXXXXXXX 773
             V+SLSE LDESMLVQW+ LA  A+A+SCYWRFVLL L ++QA I   G  G         
Sbjct:   714 VYSLSEVLDESMLVQWQTLAQTAEAKSCYWRFVLLHLEVLQAHIFEDGIAGEAAEIEALL 773

Query:   774 XXXXXXXDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQ 816
                    DESQPKN  YYS+YKIRY+L+K++DG W+FC+ DIQ
Sbjct:   774 EEAAELVDESQPKNAKYYSTYKIRYILKKQEDGLWKFCQSDIQ 816

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0043572 "plastid fission" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009528 "plastid inner membrane" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0043621 "protein self-association" evidence=IPI

TAIR\|locus:2162341 ARC6 "AT5G42480" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q55559 sll0169 "Sll0169 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY16	CDP1_ARATH	No assigned EC number	0.6036	0.8949	0.8949	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		819
pfam13355		117	pfam13355, DUF4101, Protein of unknown function (D	3e-31

>gnl\|CDD\|222068 pfam13355, DUF4101, Protein of unknown function (DUF4101)	Back alignment and domain information

 Score =  117 bits (296), Expect = 3e-31
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 693 AEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTI 752
           AE LV+ W   KA+ALGP H++ SLSE L   +L +W   A   KA   Y+ +   QL I
Sbjct: 1   AEQLVQTWLDAKAQALGPPHDIDSLSEVLTGPLLSRWRDRAQWLKANGSYYTYD-HQLKI 59

Query: 753 VQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPN-YYSSYKIRYVLRKKDDGTWRFC 811
              ++ S       AE+EA + E+A+L D  Q  N   Y  + ++RY+L  +D+G W+  
Sbjct: 60  ESVEVFSQS--PNRAEVEATVTESAQLYDNGQIDNETSYDDTLRVRYIL-VRDNGQWKIA 116

This is a family of uncharacterized proteins, and is sometimes found in combination with pfam00226. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		819
PF13355		117	DUF4101: Protein of unknown function (DUF4101)	100.0
PF00226		64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	97.58
PRK14292		371	chaperone protein DnaJ; Provisional	97.3
smart00271		60	DnaJ DnaJ molecular chaperone homology domain.	97.23
cd06257		55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	97.18
PRK14298		377	chaperone protein DnaJ; Provisional	96.99
PRK14293		374	chaperone protein DnaJ; Provisional	96.84
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	96.83
PRK14295		389	chaperone protein DnaJ; Provisional	96.81
PRK14284		391	chaperone protein DnaJ; Provisional	96.72
PRK14285		365	chaperone protein DnaJ; Provisional	96.66
PRK14299		291	chaperone protein DnaJ; Provisional	96.65
PRK14288		369	chaperone protein DnaJ; Provisional	96.64
PRK14286		372	chaperone protein DnaJ; Provisional	96.57
PRK14282		369	chaperone protein DnaJ; Provisional	96.57
PRK14300		372	chaperone protein DnaJ; Provisional	96.52
PRK14281		397	chaperone protein DnaJ; Provisional	96.52
PRK14297		380	chaperone protein DnaJ; Provisional	96.51
PRK14278		378	chaperone protein DnaJ; Provisional	96.5
TIGR02349		354	DnaJ_bact chaperone protein DnaJ. This model repre	96.49
PRK14290		365	chaperone protein DnaJ; Provisional	96.47
PRK14294		366	chaperone protein DnaJ; Provisional	96.44
PRK14277		386	chaperone protein DnaJ; Provisional	96.41
PRK14301		373	chaperone protein DnaJ; Provisional	96.38
PRK14276		380	chaperone protein DnaJ; Provisional	96.35
PRK14279		392	chaperone protein DnaJ; Provisional	96.34
PRK10767		371	chaperone protein DnaJ; Provisional	96.24
PRK14296		372	chaperone protein DnaJ; Provisional	96.16
PRK14287		371	chaperone protein DnaJ; Provisional	96.07
PRK14280		376	chaperone protein DnaJ; Provisional	96.06
PRK14291		382	chaperone protein DnaJ; Provisional	96.01
KOG0715		288	consensus Molecular chaperone (DnaJ superfamily) [	95.73
PRK10266		306	curved DNA-binding protein CbpA; Provisional	95.67
PTZ00037		421	DnaJ_C chaperone protein; Provisional	95.64
PRK14289		386	chaperone protein DnaJ; Provisional	95.45
PRK14283		378	chaperone protein DnaJ; Provisional	95.45
PRK03578		176	hscB co-chaperone HscB; Provisional	95.35
TIGR03835		871	termin_org_DnaJ terminal organelle assembly protei	95.23
PRK05014		171	hscB co-chaperone HscB; Provisional	95.19
KOG0713		336	consensus Molecular chaperone (DnaJ superfamily) [	94.66
PRK00294		173	hscB co-chaperone HscB; Provisional	94.24
PTZ00100		116	DnaJ chaperone protein; Provisional	94.19
COG2214		237	CbpA DnaJ-class molecular chaperone [Posttranslati	94.17
PF04280		147	Tim44: Tim44-like domain; InterPro: IPR007379 Tim4	93.99
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	93.57
PTZ00341		1136	Ring-infected erythrocyte surface antigen; Provisi	92.75
KOG0691		296	consensus Molecular chaperone (DnaJ superfamily) [	92.66
PRK01356		166	hscB co-chaperone HscB; Provisional	92.04
KOG0717		508	consensus Molecular chaperone (DnaJ superfamily) [	91.45
KOG0568		342	consensus Molecular chaperone (DnaJ superfamily) [	91.19
PHA03102		153	Small T antigen; Reviewed	90.61
KOG0716		279	consensus Molecular chaperone (DnaJ superfamily) [	90.11
PF12870		111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	88.32
PRK01773		173	hscB co-chaperone HscB; Provisional	87.99
KOG0718		546	consensus Molecular chaperone (DnaJ superfamily) [	87.94
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	86.88
PF12883		120	DUF3828: Protein of unknown function (DUF3828); In	86.56
KOG0712		337	consensus Molecular chaperone (DnaJ superfamily) [	85.73
KOG0720		490	consensus Molecular chaperone (DnaJ superfamily) [	84.02
PRK13616		591	lipoprotein LpqB; Provisional	81.88

>PF13355 DUF4101: Protein of unknown function (DUF4101)	Back alignment and domain information

Probab=100.00  E-value=1.9e-35  Score=277.50  Aligned_cols=116  Identities=40%  Similarity=0.737  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEEEEE
Q 003442          693 AEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAV  772 (819)
Q Consensus       693 Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~  772 (819)
                      |++||++||++||+||||+|++++|++||+|+||++|++++++++++||||+|+ |+++|++|+++.+  +|++|+|+|+
T Consensus         1 A~~lv~~Wl~~Ka~alg~~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~-~~~~I~sv~~~~~--~~~ra~v~a~   77 (117)
T PF13355_consen    1 AEQLVQRWLSAKAQALGPPHDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYD-HKLKIDSVEVFSD--SPNRATVEAT   77 (117)
T ss_pred             CHHHHHHHHHHHHHHhCCCcchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEe-eeeEEEEEEEcCC--CCCeEEEEEE
Confidence            789999999999999999999999999999999999999999999999999999 9999999999854  5899999999


Q ss_pred             EEEeEEecccCCCCC-CCCccceEEEEEEEEcCCCceeEee
Q 003442          773 LEEAAELVDESQPKN-PNYYSSYKIRYVLRKKDDGTWRFCK  812 (819)
Q Consensus       773 V~E~a~Lyd~~~~~~-~Sy~~ty~vRY~L~r~~dG~WKI~~  812 (819)
                      |+|+++||++|++.+ +||++||+|||+|+|++ |+|||+|
T Consensus        78 v~E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~-~~WkI~d  117 (117)
T PF13355_consen   78 VTESAQLYDNGQPDNNPSYDSTLRVRYELVRQN-GQWKITD  117 (117)
T ss_pred             EEEEEEEEeCCccccCCCCCCcEEEEEEEEEcC-CEEEecC
Confidence            999999999999885 69999999999999985 6899986

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>PRK14292 chaperone protein DnaJ; Provisional	Back alignment and domain information

>smart00271 DnaJ DnaJ molecular chaperone homology domain	Back alignment and domain information

>cd06257 DnaJ DnaJ domain or J-domain	Back alignment and domain information

>PRK14298 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14293 chaperone protein DnaJ; Provisional	Back alignment and domain information

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14295 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14284 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14285 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14299 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14288 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14286 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14282 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14300 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14281 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14297 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14278 chaperone protein DnaJ; Provisional	Back alignment and domain information

>TIGR02349 DnaJ_bact chaperone protein DnaJ	Back alignment and domain information

>PRK14290 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14294 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14277 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14301 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14276 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14279 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10767 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14296 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14287 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14280 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14291 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10266 curved DNA-binding protein CbpA; Provisional	Back alignment and domain information

>PTZ00037 DnaJ_C chaperone protein; Provisional	Back alignment and domain information

>PRK14289 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14283 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK03578 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ	Back alignment and domain information

>PRK05014 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK00294 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PTZ00100 DnaJ chaperone protein; Provisional	Back alignment and domain information

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional	Back alignment and domain information

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK01356 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA03102 Small T antigen; Reviewed	Back alignment and domain information

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria	Back alignment and domain information

>PRK01773 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function	Back alignment and domain information

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13616 lipoprotein LpqB; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		819
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 75.7 bits (185), Expect = 4e-14
 Identities = 106/678 (15%), Positives = 205/678 (30%), Gaps = 181/678 (26%)

Query: 109 MDLKRAEIEEGYT------MDAFMSRQDVLMDVRDKL---LFEPEYAGNIRENIPPKPSL 159
           MD +  E +  Y        DAF+   D   DV+D     L + E      ++I      
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEI-----DHIIMSKDA 60

Query: 160 KIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAEC---AIAKV 216
                 L   L   QE   +K V +     L+  N   Y   FL+S    E    ++   
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEE----VLR-IN---Y--KFLMSPIKTEQRQPSMMTR 110

Query: 217 AFEK-----NNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLEELAPACTLELLGMP 271
            + +      N +Q F           +K ++  +    ++ ++L EL PA  + + G+ 
Sbjct: 111 MYIEQRDRLYNDNQVF-----------AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 272 --------------HSPE-------------NAERRRGAIAALRELIRQGLD------VE 298
                         +  +             N       +  L++L+ Q +D       +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSD 218

Query: 299 TSCRVQDWPCFLSRALNRLMAAEVV--DLLPWDDLAITRKNKKSLESQNQRVVIDFNCFY 356
            S  ++     +   L RL+ ++     LL   ++    +N K+  +       + +C  
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----QNAKAWNA------FNLSC-- 266

Query: 357 IALIAHVALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVE-- 414
                         +I L ++ K + D L A+ +  +  +           T  E     
Sbjct: 267 --------------KILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSLL 307

Query: 415 ------KLQQL---ELNSNPAMRSSFSGKEKKEISGAK--PSVEMWLKDAVLSVF----- 458
                 + Q L    L +NP   S  +   +  ++       V       ++        
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 459 -PDTQDCSPSLVNFFKGEK---KTPAIKKCKGPPQTPLTMSQRPLSSALASDGRDFEDSH 514
             + +     L  F           ++          + +  +    +L    +  ++S 
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKEST 425

Query: 515 TSIKSSRHLGSAVKQLTPTDLQSPLVAS----KNSNGNNVSPSSAQLERGLGLQRSKVWE 570
            SI  S +L   VK      L   +V      K  + +++ P              + + 
Sbjct: 426 ISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP----------PYLDQYFY 474

Query: 571 SWLA----GRNGIERIA-FAAVLGCIMFLAVKLSGIRSNSVRNLSSSQQNMQMSSFVRTT 625
           S +          ER+  F  V     FL  K+     ++  N S S             
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGS-----------IL 521

Query: 626 DSSLDDSLGRTCI-KRHGIASRLTELIKMVKLLFRNTSDTLYSQSSCL-PASLSTSNIAV 683
           ++       +  I        RL   I     L +   + + S+ + L   +L   + A+
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSKYTDLLRIALMAEDEAI 579

Query: 684 TQRPMPLEEAEALVKQWQ 701
                  EEA    KQ Q
Sbjct: 580 ------FEEAH---KQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		819
2och_A		73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	97.67
2dn9_A		79	DNAJ homolog subfamily A member 3; J-domain, TID1,	97.65
2ctp_A		78	DNAJ homolog subfamily B member 12; J-domain, chap	97.59
2ej7_A		82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	97.49
2yua_A		99	Williams-beuren syndrome chromosome region 18 prot	97.48
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	97.48
2ctr_A		88	DNAJ homolog subfamily B member 9; J-domain, chape	97.4
1hdj_A		77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	97.36
2dmx_A		92	DNAJ homolog subfamily B member 8; DNAJ J domain,	97.34
2o37_A		92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	97.29
2lgw_A		99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	97.27
1wjz_A		94	1700030A21RIK protein; J-domain, DNAJ like protein	97.24
2ctq_A		112	DNAJ homolog subfamily C member 12; J-domain, chap	97.22
1bq0_A		103	DNAJ, HSP40; chaperone, heat shock, protein foldin	97.2
2ctw_A		109	DNAJ homolog subfamily C member 5; J-domain, chape	97.16
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	97.05
2qsa_A		109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	97.04
3apq_A		210	DNAJ homolog subfamily C member 10; thioredoxin fo	96.72
2l6l_A		155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	96.61
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	96.52
2ys8_A		90	RAB-related GTP-binding protein RABJ; DNAJ domain,	96.26
2guz_A		71	Mitochondrial import inner membrane translocase su	96.14
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	96.13
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	95.53
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	95.38
1faf_A		79	Large T antigen; J domain, HPD motif, anti-paralle	95.35
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	95.31
1iur_A		88	KIAA0730 protein; DNAJ like domain, riken structur	95.05
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	94.19
3apo_A		780	DNAJ homolog subfamily C member 10; PDI family, th	93.95
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	92.99
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	92.05
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	91.32
2guz_B		65	Mitochondrial import inner membrane translocase su	91.15
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	81.78

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A	Back alignment and structure

Probab=97.67  E-value=4.6e-05  Score=64.65  Aligned_cols=64  Identities=13%  Similarity=0.134  Sum_probs=49.2

Q ss_pred             eeeccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442           82 TVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN  148 (819)
Q Consensus        82 ~m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~  148 (819)
                      .|.-+.|||+||||++.++.++|.+||..+..+- |+.+-..   ..+-+.|..||+.|.+   |..|+..
T Consensus         3 ~m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~   70 (73)
T 2och_A            3 AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQG   70 (73)
T ss_dssp             ---CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            4677899999999999999999999997776554 6654332   3466789999999998   7788853

PyMOL of 2och

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}	Back alignment and structure

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}	Back alignment and structure

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1	Back alignment and structure

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A	Back alignment and structure

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}	Back alignment and structure

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}	Back alignment and structure

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}	Back alignment and structure

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1	Back alignment and structure

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A	Back alignment and structure

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C	Back alignment and structure

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J	Back alignment and structure

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A	Back alignment and structure

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		819
d1hdja_		77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1xbla_		75	DnaJ chaperone, N-terminal (J) domain {Escherichia	97.91
d1wjza_		94	CSL-type zinc finger-containing protein 3 (J-domai	97.44
d1fpoa1		76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	97.22
d1gh6a_		114	Large T antigen, the N-terminal J domain {Simian v	96.26
d1fafa_		79	Large T antigen, the N-terminal J domain {Murine p	96.07
d1iura_		88	Hypothetical protein KIAA0730 {Human (Homo sapiens	95.3
d1nz6a_		98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	94.19
d3d9ra1		132	Uncharacterized protein ECA1476 {Pectobacterium at	87.51

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.8e-06  Score=71.45  Aligned_cols=62  Identities=13%  Similarity=0.094  Sum_probs=50.6

Q ss_pred             cchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcccc
Q 003442           88 SCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNIR  150 (819)
Q Consensus        88 D~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l~  150 (819)
                      |||+||||++.++.++|.+||..+...- |+. +.......+-+.|..|++.|.+   |..|+.-..
T Consensus         4 dyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~-~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~   69 (77)
T d1hdja_           4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDK-NKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTT-CCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             ChHHHcCCCCCcCHHHHHHHHHHHHHHhcccc-ccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence            8999999999999999999998877776 553 3344456778899999999998   788986443

PyMOL of d1hdja_

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}	Back information, alignment and structure

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}	Back information, alignment and structure