Citrus Sinensis ID: 003531
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 812 | 2.2.26 [Sep-21-2011] | |||||||
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | yes | no | 0.971 | 0.975 | 0.705 | 0.0 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.934 | 0.958 | 0.386 | 1e-165 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.903 | 0.824 | 0.398 | 1e-164 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.944 | 0.880 | 0.369 | 1e-162 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.965 | 0.922 | 0.359 | 1e-160 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.935 | 0.923 | 0.386 | 1e-160 | |
| Q9M9E2 | 866 | Pentatricopeptide repeat- | no | no | 0.897 | 0.841 | 0.380 | 1e-158 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.805 | 0.942 | 0.413 | 1e-158 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.942 | 0.9 | 0.371 | 1e-151 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.947 | 0.913 | 0.354 | 1e-151 |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1206 bits (3120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/789 (70%), Positives = 665/789 (84%)
Query: 24 HKHTLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFC 83
H+H LS+R YIP+ +Y HP+ALLLE C+SLKELR+ILPL+ K+GL +H FQTKLVSLFC
Sbjct: 21 HRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFC 80
Query: 84 KYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTY 143
+Y S+ +AARVFEPI KL+ LYHTMLKG+AK + LD A+ F +RMRYDDV PVVYN+TY
Sbjct: 81 RYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY 140
Query: 144 LLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD 203
LLKVCGD E+R GKEIHG L+ +GFSLDLFAMTG+ NMYAKC Q+ EA K+FDRMPERD
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200
Query: 204 LVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHG 263
LVSWNTIVAG++QNG A +AL++V M EE + FITIVS+LPAV+ + + +GK +HG
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHG 260
Query: 264 YAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEE 323
YAMR+GFDS+VN+STALVDMYAKCG +ETAR +FDGM RNVVSWNSMI AYV+ NP+E
Sbjct: 261 YAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKE 320
Query: 324 AMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLIS 383
AM IFQKMLD+GV+PT+V++M ALHACADLGDLERG F+HKL +L L +VS+ NSLIS
Sbjct: 321 AMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLIS 380
Query: 384 MYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT 443
MY KCK+VD AA +F KLQ +TLVSWNAMILG+AQNGR +ALNYF +MRS+ +KPD+FT
Sbjct: 381 MYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFT 440
Query: 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN 503
VSVI A+AELS+ +AKWIH +V+RSC +KNVFV TAL+DMYAKCGA+ AR +FDMM+
Sbjct: 441 YVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS 500
Query: 504 ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIH 563
ERHVTTWN MIDGYGTHG GKAA+ELF +M +G KPN +TFL ISACSHSGLVE G+
Sbjct: 501 ERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLK 560
Query: 564 YFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH 623
F +K++Y IE MDHYGAMVDLLGRAGRLNEAWDFI +MP++P + V+GAMLGAC+IH
Sbjct: 561 CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIH 620
Query: 624 KNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSL 683
KNV EKAA RLFEL+PD+GGYHVLLANIY AASMW+K+ +VR M ++GL+KTPGCS+
Sbjct: 621 KNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSM 680
Query: 684 VELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSS 743
VE+KNEVHSF+SGST HP SK+IY FLE LI IK AGYVPDTN + VE+ V+E LLS+
Sbjct: 681 VEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLST 740
Query: 744 HSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKN 803
HSEKLAI+FGLLN++ G+TIH+RKNLRVC DCHNATKYISLVTGREI+VRDM RFH FKN
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800
Query: 804 GVCSCGDYW 812
G CSCGDYW
Sbjct: 801 GACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/765 (38%), Positives = 450/765 (58%), Gaps = 6/765 (0%)
Query: 51 TSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDALYHTML 110
TS+ L + II G + TKL ++ A +F + L++ ++
Sbjct: 31 TSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLM 90
Query: 111 KGYAKFASLDDAVSFLIRMRYD-DVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGF 169
+G++ S ++S +R D+ P Y + + + R G+ IHGQ +V+G
Sbjct: 91 RGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGC 150
Query: 170 SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNG-FAELALDLVT 228
+L + +V MY K ++E+A K+FDRMPE+D + WNT+++G+ +N + E
Sbjct: 151 DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRD 210
Query: 229 RMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCG 288
++E R D T++ ILPAVA + LR+G +H A + G S V T + +Y+KCG
Sbjct: 211 LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG 270
Query: 289 RVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALH 348
+++ +F + ++V++N+MI Y G E ++ +F++++ G + T++ +
Sbjct: 271 KIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVP 330
Query: 349 ACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVS 408
G L +H + + S++ +L ++YSK +++ A +F + K+L S
Sbjct: 331 VS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387
Query: 409 WNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVI 468
WNAMI GY QNG +A++ F +M+ P+ T+ ++ A A+L + KW+H LV
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447
Query: 469 RSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVE 528
+ FE +++V TALI MYAKCG++ AR LFD+M +++ TWN MI GYG HG G+ A+
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALN 507
Query: 529 LFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL 588
+F +ML P +TFLC + ACSH+GLV+EG F S+ YG EP + HY MVD+L
Sbjct: 508 IFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567
Query: 589 GRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648
GRAG L A FI+ M IEPG +V+ +LGAC+IHK+ L + +LFELDPD GYHV
Sbjct: 568 GRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHV 627
Query: 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYT 708
LL+NI++A + + A VR +K+ L K PG +L+E+ H F SG HPQ K IY
Sbjct: 628 LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYE 687
Query: 709 FLETLIDEIKAAGYVPDTN-SIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRK 767
LE L +++ AGY P+T ++HDVE+ +E ++ HSE+LAIAFGL+ + PG+ I I K
Sbjct: 688 KLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIK 747
Query: 768 NLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
NLRVC DCH TK IS +T R I+VRD +RFH FK+GVCSCGDYW
Sbjct: 748 NLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 300/753 (39%), Positives = 460/753 (61%), Gaps = 19/753 (2%)
Query: 78 LVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPV 137
LV+L+ K +VF+ I ++ +++++ F + A+ M ++V P
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPS 198
Query: 138 VYNYTYLLKVCGDVG---EIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYK 194
+ ++ C ++ + GK++H + G L+ F + +V MY K G++ +
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKV 257
Query: 195 MFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGS 254
+ RDLV+WNT+++ QN AL+ + M EG D TI S+LPA +++
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317
Query: 255 LRIGKAVHGYAMRAG-FDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIA 313
LR GK +H YA++ G D V +ALVDMY C +V + R VFDGM R + WN+MIA
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 314 AYVEGGNPEEAMRIFQKMLDQ-GVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLG 372
Y + + +EA+ +F M + G+ + T+ + AC G R +H + + L
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 373 TDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKM 432
D + N+L+ MYS+ K+D A IF K++ + LV+WN MI GY + +AL KM
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497
Query: 433 RS-----------KNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTA 481
++ ++KP+S T+++++P+ A LS + K IHA I++ +V V +A
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 557
Query: 482 LIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN 541
L+DMYAKCG + +R +FD + +++V TWNV+I YG HG G+ A++L M+ KPN
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617
Query: 542 DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFI 601
++TF+ +ACSHSG+V+EG+ F +K DYG+EP DHY +VDLLGRAGR+ EA+ +
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLM 677
Query: 602 QKMPIE-PGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMW 660
MP + + ++LGA +IH N+E+GE AA L +L+P+ ++VLLANIY++A +W
Sbjct: 678 NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLW 737
Query: 661 DKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAA 720
DK +VR M+++G++K PGCS +E +EVH F +G + HPQS+++ +LETL + ++
Sbjct: 738 DKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKE 797
Query: 721 GYVPDTNSI-HDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNAT 779
GYVPDT+ + H+VE+ +E LL HSEKLAIAFG+LN+SPG+ I + KNLRVC DCH AT
Sbjct: 798 GYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLAT 857
Query: 780 KYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
K+IS + REII+RD+ RFH FKNG CSCGDYW
Sbjct: 858 KFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1473), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/772 (36%), Positives = 462/772 (59%), Gaps = 5/772 (0%)
Query: 46 LLEVCT---SLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKL 102
+L++C SLK+ + + I +G +KL ++ L +A+RVF+ + +
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159
Query: 103 DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHG 162
++ ++ AK ++ +M V Y ++ + K + + G+++HG
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219
Query: 163 QLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAEL 222
++ +GF +V Y K +++ A K+FD M ERD++SWN+I+ G+ NG AE
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 223 ALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVD 282
L + +M G D TIVS+ A+ + +G+AVH ++A F L+D
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339
Query: 283 MYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT 342
MY+KCG +++A+ VF M R+VVS+ SMIA Y G EA+++F++M ++G+ P T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 343 IMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQ 402
+ L+ CA L+ G VH+ + + LG D+ ++N+L+ MY+KC + A +FS+++
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
Query: 403 GKTLVSWNAMILGYAQNGRVNEALNYF-CKMRSKNIKPDSFTMVSVIPALAELSVIRYAK 461
K ++SWN +I GY++N NEAL+ F + K PD T+ V+PA A LS +
Sbjct: 460 VKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGR 519
Query: 462 WIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHG 521
IH ++R+ + + V +L+DMYAKCGA+ A LFD + + + +W VMI GYG HG
Sbjct: 520 EIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHG 579
Query: 522 LGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY 581
GK A+ LFN+M + + ++I+F+ + ACSHSGLV+EG +F ++ + IEP ++HY
Sbjct: 580 FGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHY 639
Query: 582 GAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDP 641
+VD+L R G L +A+ FI+ MPI P T++GA+L C+IH +V+L EK A ++FEL+P
Sbjct: 640 ACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEP 699
Query: 642 DEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHP 701
+ GY+VL+ANIYA A W+++ ++R + ++GL+K PGCS +E+K V+ F +G + +P
Sbjct: 700 ENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNP 759
Query: 702 QSKRIYTFLETLIDEIKAAGYVPDTN-SIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPG 760
+++ I FL + + GY P T ++ D E+ +E L HSEKLA+A G+++S G
Sbjct: 760 ETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHG 819
Query: 761 STIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
I + KNLRVCGDCH K++S +T REI++RD +RFH FK+G CSC +W
Sbjct: 820 KIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust.
Identities = 310/863 (35%), Positives = 480/863 (55%), Gaps = 79/863 (9%)
Query: 3 SHSQCQLSVFTNSTPTQTLHEHKHTLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPL 62
SH ++S+F+ S P T P I++ C ++ +++ I
Sbjct: 14 SHQYIKVSLFSTSAPEIT--------------PPFIHK---------CKTISQVKLIHQK 50
Query: 63 IIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDALYH--TMLKGYAKFASLD 120
++ G+ +L + L+S + LS A + P +YH ++++ Y +
Sbjct: 51 LLSFGILTLNL-TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCAN 109
Query: 121 DAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVV 180
+ M P Y + ++ K CG++ +R G+ H +V GF ++F +V
Sbjct: 110 KCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALV 169
Query: 181 NMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEE-GRRGDF 239
MY++C + +A K+FD M D+VSWN+I+ +A+ G ++AL++ +RM E G R D
Sbjct: 170 AMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDN 229
Query: 240 ITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDG 299
IT+V++LP A++G+ +GK +H +A+ + + V LVDMYAKCG ++ A VF
Sbjct: 230 ITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSN 289
Query: 300 MKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKM---------------------------- 331
M ++VVSWN+M+A Y + G E+A+R+F+KM
Sbjct: 290 MSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349
Query: 332 -------LDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKL-------GTDVSM 377
L G++P VT++ L CA +G L G +H + + G + +
Sbjct: 350 LGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409
Query: 378 TNSLISMYSKCKKVDRAADIFSKLQGKT--LVSWNAMILGYAQNGRVNEALNYFCKMRSK 435
N LI MY+KCKKVD A +F L K +V+W MI GY+Q+G N+AL +M +
Sbjct: 410 INQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469
Query: 436 N--IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKN---VFVMTALIDMYAKCG 490
+ +P++FT+ + A A L+ +R K IHA +R+ ++N +FV LIDMYAKCG
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRN--QQNAVPLFVSNCLIDMYAKCG 527
Query: 491 AVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAIS 550
++ AR +FD M ++ TW ++ GYG HG G+ A+ +F++M K + +T L +
Sbjct: 528 SISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLY 587
Query: 551 ACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGI 610
ACSHSG++++G+ YF +K +G+ P +HY +VDLLGRAGRLN A I++MP+EP
Sbjct: 588 ACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPP 647
Query: 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670
V+ A L C+IH VELGE AA ++ EL + G + LL+N+YA A W + ++R++M
Sbjct: 648 VVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLM 707
Query: 671 EKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTN-SI 729
KG++K PGCS VE +F+ G HP +K IY L + IK GYVP+T ++
Sbjct: 708 RHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFAL 767
Query: 730 HDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGRE 789
HDV+D +++LL HSEKLA+A+G+L + G+ I I KNLRVCGDCH A Y+S + +
Sbjct: 768 HDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHD 827
Query: 790 IIVRDMHRFHCFKNGVCSCGDYW 812
II+RD RFH FKNG CSC YW
Sbjct: 828 IILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 298/771 (38%), Positives = 465/771 (60%), Gaps = 11/771 (1%)
Query: 46 LLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDAL 105
L CT+L+ + + ++ S KLV+L+C +++ A F+ I ++
Sbjct: 60 LFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYA 119
Query: 106 YHTMLKGYAKFASLDDAVS-FLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQL 164
++ M+ GY + + + + F + M + P + +LK C V + G +IH
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLA 176
Query: 165 IVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELAL 224
+ GF D++ ++++Y++ + A +FD MP RD+ SWN +++G+ Q+G A+ AL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236
Query: 225 DLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMY 284
L + R D +T+VS+L A G G +H Y+++ G +S + VS L+D+Y
Sbjct: 237 TLSNGL----RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292
Query: 285 AKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIM 344
A+ GR+ + VFD M R+++SWNS+I AY P A+ +FQ+M ++P +T++
Sbjct: 293 AEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLI 352
Query: 345 EALHACADLGDLERGIFVHKL-LDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG 403
+ LGD+ V L + D+++ N+++ MY+K VD A +F+ L
Sbjct: 353 SLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPN 412
Query: 404 KTLVSWNAMILGYAQNGRVNEALNYFCKMRSK-NIKPDSFTMVSVIPALAELSVIRYAKW 462
++SWN +I GYAQNG +EA+ + M + I + T VSV+PA ++ +R
Sbjct: 413 TDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMK 472
Query: 463 IHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGL 522
+H ++++ +VFV+T+L DMY KCG + A +LF + + WN +I +G HG
Sbjct: 473 LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGH 532
Query: 523 GKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYG 582
G+ AV LF +ML+ KP+ ITF+ +SACSHSGLV+EG F ++ DYGI P + HYG
Sbjct: 533 GEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYG 592
Query: 583 AMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPD 642
MVD+ GRAG+L A FI+ M ++P +++GA+L AC++H NV+LG+ A+ LFE++P+
Sbjct: 593 CMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPE 652
Query: 643 EGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQ 702
GYHVLL+N+YA+A W+ + ++R+I KGL+KTPG S +E+ N+V FY+G+ HP
Sbjct: 653 HVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPM 712
Query: 703 SKRIYTFLETLIDEIKAAGYVPDTNSI-HDVEDYVQENLLSSHSEKLAIAFGLLNSSPGS 761
+ +Y L L ++K GYVPD + DVED +E++L SHSE+LAIAF L+ + +
Sbjct: 713 YEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKT 772
Query: 762 TIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
TI I KNLRVCGDCH+ TK+IS +T REIIVRD +RFH FKNGVCSCGDYW
Sbjct: 773 TIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/736 (38%), Positives = 450/736 (61%), Gaps = 7/736 (0%)
Query: 78 LVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRY-DDVAP 136
+++F ++ +L DA VF + ++ ++ ++ GYAK D+A+ RM + V P
Sbjct: 135 FLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKP 194
Query: 137 VVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMF 196
VY + +L+ CG + ++ RGKE+H ++ G+ LD+ + ++ MY KCG ++ A +F
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254
Query: 197 DRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLR 256
DRMP RD++SWN +++G+ +NG L+L M D +T+ S++ A +G R
Sbjct: 255 DRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRR 314
Query: 257 IGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYV 316
+G+ +H Y + GF ++V +L MY G A +F M+ +++VSW +MI+ Y
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYE 374
Query: 317 EGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVS 376
P++A+ ++ M V+P +T+ L ACA LGDL+ G+ +HKL + +L + V
Sbjct: 375 YNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVI 434
Query: 377 MTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436
+ N+LI+MYSKCK +D+A DIF + K ++SW ++I G N R EAL + +M+
Sbjct: 435 VANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMK-MT 493
Query: 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTAR 496
++P++ T+ + + A A + + K IHA V+R+ + F+ AL+DMY +CG + TA
Sbjct: 494 LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAW 553
Query: 497 ALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSG 556
+ F+ ++ VT+WN+++ GY G G VELF++M++ +P++ITF+ + CS S
Sbjct: 554 SQFN-SQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQ 612
Query: 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAM 616
+V +G+ YF+ + +DYG+ P + HY +VDLLGRAG L EA FIQKMP+ P V+GA+
Sbjct: 613 MVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGAL 671
Query: 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676
L AC+IH ++LGE +A +FELD GY++LL N+YA W ++AKVR +M++ GL
Sbjct: 672 LNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLT 731
Query: 677 KTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGY--VPDTNSIHDVED 734
GCS VE+K +VH+F S HPQ+K I T LE +++ G + +++S+ + E
Sbjct: 732 VDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETE- 790
Query: 735 YVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRD 794
++ + HSE+ AIAFGL+N+ PG I + KNL +C +CH+ K+IS REI VRD
Sbjct: 791 ISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRD 850
Query: 795 MHRFHCFKNGVCSCGD 810
FH FK+G CSCGD
Sbjct: 851 AEHFHHFKDGECSCGD 866
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 560 bits (1442), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/658 (41%), Positives = 420/658 (63%), Gaps = 4/658 (0%)
Query: 158 KEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQN 217
K+IH +L+V G F +T +++ + G I A ++FD +P + WN I+ G+++N
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 218 GFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVS 277
+ AL + + M D T +L A + + L++G+ VH R GFD+ V V
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 278 TALVDMYAKCGRVETARLVFDGMK--SRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQG 335
L+ +YAKC R+ +AR VF+G+ R +VSW ++++AY + G P EA+ IF +M
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 336 VEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAA 395
V+P V ++ L+A L DL++G +H + ++ L + + SL +MY+KC +V A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 396 DIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELS 455
+F K++ L+ WNAMI GYA+NG EA++ F +M +K+++PD+ ++ S I A A++
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Query: 456 VIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMID 515
+ A+ ++ V RS + +VF+ +ALIDM+AKCG+V AR +FD +R V W+ MI
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIV 397
Query: 516 GYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575
GYG HG + A+ L+ M G PND+TFL + AC+HSG+V EG +F + D+ I
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKIN 456
Query: 576 PVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANR 635
P HY ++DLLGRAG L++A++ I+ MP++PG+TV+GA+L ACK H++VELGE AA +
Sbjct: 457 PQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQ 516
Query: 636 LFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYS 695
LF +DP G++V L+N+YAAA +WD++A+VR M++KGL K GCS VE++ + +F
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRV 576
Query: 696 GSTKHPQSKRIYTFLETLIDEIKAAGYVPDTN-SIHDVEDYVQENLLSSHSEKLAIAFGL 754
G HP+ + I +E + +K G+V + + S+HD+ D E L SHSE++AIA+GL
Sbjct: 577 GDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGL 636
Query: 755 LNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
+++ G+ + I KNLR C +CH ATK IS + REI+VRD +RFH FK+GVCSCGDYW
Sbjct: 637 ISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/785 (37%), Positives = 453/785 (57%), Gaps = 20/785 (2%)
Query: 46 LLEVCTSLKELRR---ILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIP--D 100
LL+ C ++ R + +I+ + + L+SL+ K + A VFE +
Sbjct: 68 LLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFG 127
Query: 101 KLDAL-YHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKE 159
K D + + M+ Y DA+ + + P Y YT +++ C + + G+
Sbjct: 128 KRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRV 187
Query: 160 IHGQLIVNG-FSLDLFAMTGVVNMYAKC-GQIEEAYKMFDRMPERDLVSWNTIVAGFAQN 217
G L+ G F D+ +++M+ K E AYK+FD+M E ++V+W ++ Q
Sbjct: 188 TLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM 247
Query: 218 GFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVS 277
GF A+ M G D T+ S+ A A + +L +GK +H +A+R+G + +V
Sbjct: 248 GFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL--VDDVE 305
Query: 278 TALVDMYAKC---GRVETARLVFDGMKSRNVVSWNSMIAAYVEGGN-PEEAMRIFQKMLD 333
+LVDMYAKC G V+ R VFD M+ +V+SW ++I Y++ N EA+ +F +M+
Sbjct: 306 CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT 365
Query: 334 QG-VEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVD 392
QG VEP + T A AC +L D G V + L ++ S+ NS+ISM+ K +++
Sbjct: 366 QGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRME 425
Query: 393 RAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALA 452
A F L K LVS+N + G +N +A ++ + + +FT S++ +A
Sbjct: 426 DAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA 485
Query: 453 ELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNV 512
+ IR + IH+ V++ N V ALI MY+KCG++ TA +F+ M R+V +W
Sbjct: 486 NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTS 545
Query: 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDY 572
MI G+ HG +E FN+M+E KPN++T++ +SACSH GLV EG +F S+ +D+
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDH 605
Query: 573 GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKA 632
I+P M+HY MVDLL RAG L +A++FI MP + + V+ LGAC++H N ELG+ A
Sbjct: 606 KIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLA 665
Query: 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHS 692
A ++ ELDP+E ++ L+NIYA A W++ ++R M+++ L K GCS +E+ +++H
Sbjct: 666 ARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHK 725
Query: 693 FYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSI-HDV----EDYVQENLLSSHSEK 747
FY G T HP + +IY L+ LI EIK GYVPDT+ + H + ++ +E LL HSEK
Sbjct: 726 FYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEK 785
Query: 748 LAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCS 807
+A+AFGL+++S + + KNLRVCGDCHNA KYIS V+GREI++RD++RFH FK+G CS
Sbjct: 786 IAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCS 845
Query: 808 CGDYW 812
C DYW
Sbjct: 846 CNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 287/809 (35%), Positives = 467/809 (57%), Gaps = 40/809 (4%)
Query: 42 PSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKY---NSLSDAARVFEPI 98
PS+L + C ++ EL+ + K GL + TKLV+ C+ SLS A VFE
Sbjct: 36 PSSL--KNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS 93
Query: 99 PDKLDA-LYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRG 157
+Y+++++GYA ++A+ +RM ++P Y + + L C G
Sbjct: 94 ESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNG 153
Query: 158 KEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQN 217
+IHG ++ G++ DLF +V+ YA+CG+++ A K+FD M ER++VSW +++ G+A+
Sbjct: 154 IQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 218 GFAELALDLVTRM-HEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNV 276
FA+ A+DL RM +E + +T+V ++ A A + L G+ V+ + +G + +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 277 STALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGV 336
+ALVDMY KC ++ A+ +FD + N+ N+M + YV G EA+ +F M+D GV
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGV 333
Query: 337 EPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAAD 396
P ++++ A+ +C+ L ++ G H + + + ++ N+LI MY KC + D A
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393
Query: 397 IFSKLQGKTLVSWNAMILGYAQNGRVN-------------------------------EA 425
IF ++ KT+V+WN+++ GY +NG V+ EA
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453
Query: 426 LNYFCKMRSKN-IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALID 484
+ FC M+S+ + D TM+S+ A L + AKWI+ + ++ + +V + T L+D
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVD 513
Query: 485 MYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDIT 544
M+++CG +A ++F+ + R V+ W I G + A+ELF+ M+E KP+ +
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVA 573
Query: 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM 604
F+ A++ACSH GLV++G F S+ K +G+ P HYG MVDLLGRAG L EA I+ M
Sbjct: 574 FVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633
Query: 605 PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLA 664
P+EP ++ ++L AC++ NVE+ AA ++ L P+ G +VLL+N+YA+A W+ +A
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 693
Query: 665 KVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVP 724
KVR M++KGL+K PG S ++++ + H F SG HP+ I L+ + G+VP
Sbjct: 694 KVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVP 753
Query: 725 D-TNSIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYIS 783
D +N + DV++ + +LS HSEKLA+A+GL++S+ G+TI I KNLRVC DCH+ K+ S
Sbjct: 754 DLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFAS 813
Query: 784 LVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
V REII+RD +RFH + G CSCGD+W
Sbjct: 814 KVYNREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 812 | ||||||
| 225449798 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.967 | 0.925 | 0.774 | 0.0 | |
| 449523792 | 821 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.958 | 0.748 | 0.0 | |
| 449458783 | 821 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.958 | 0.745 | 0.0 | |
| 356515320 | 816 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.959 | 0.719 | 0.0 | |
| 15220337 | 809 | pentatricopeptide repeat-containing prot | 0.971 | 0.975 | 0.705 | 0.0 | |
| 297849508 | 809 | pentatricopeptide repeat-containing prot | 0.971 | 0.975 | 0.705 | 0.0 | |
| 224073070 | 704 | predicted protein [Populus trichocarpa] | 0.855 | 0.987 | 0.784 | 0.0 | |
| 356510389 | 818 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.955 | 0.680 | 0.0 | |
| 357118962 | 900 | PREDICTED: pentatricopeptide repeat-cont | 0.870 | 0.785 | 0.578 | 0.0 | |
| 125595802 | 734 | hypothetical protein OsJ_19868 [Oryza sa | 0.870 | 0.963 | 0.572 | 0.0 |
| >gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1310 bits (3391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/786 (77%), Positives = 699/786 (88%)
Query: 27 TLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYN 86
T S R YIPS +Y+HPSA+LLE+CTS+KEL + +PLIIK+GL +HLFQTKLVSLFCK+
Sbjct: 64 TPSSRTYIPSHVYKHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFG 123
Query: 87 SLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLK 146
SL +AARVF+PI DK+D LYHTMLKGYA+ +SLDDAVSF RMRYD V PVVYN+TYLLK
Sbjct: 124 SLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLK 183
Query: 147 VCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVS 206
VCGD ++R+GKEIH QLIVNGF+ ++FAMTGVVNMYAKC +EEAYKMFDRMPERDLV
Sbjct: 184 VCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVC 243
Query: 207 WNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAM 266
WNTI++G+AQNGF + AL+LV RM EEG+R D ITIVSILPAVA+VGSLRIG+++HGY+M
Sbjct: 244 WNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSM 303
Query: 267 RAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMR 326
RAGF+S VNVSTALVDMY+KCG V TARL+FD M + VVSWNSMI YV+ G+P AM
Sbjct: 304 RAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAME 363
Query: 327 IFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYS 386
IFQKM+D+ VE TNVT+M ALHACADLGD+E+G FVHKLLDQL+LG+DVS+ NSLISMYS
Sbjct: 364 IFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYS 423
Query: 387 KCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVS 446
KCK+VD AA+IF LQ KTLVSWNAMILGYAQNGR+NEA++YFCKM+ +NIKPDSFTMVS
Sbjct: 424 KCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVS 483
Query: 447 VIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH 506
VIPALAELSV+ AKWIH LVIR+C +KNVFV TAL+DMYAKCGAV TAR LFDMM+ERH
Sbjct: 484 VIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERH 543
Query: 507 VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFT 566
VTTWN MIDGYGTHGLGKAA+ELF KM + KPN++TFLC +SACSHSGLVEEG YF
Sbjct: 544 VTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFG 603
Query: 567 SLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNV 626
S+KKDYG+EP MDHYGAMVDLLGRA RLNEAWDFIQKMPIEP I+VFGAMLGAC+IHKNV
Sbjct: 604 SMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNV 663
Query: 627 ELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVEL 686
ELGEKAANR+F+LDPD+GGYHVLLANIYA ASMWDK+A+VRT MEKKG+QKTPG S+VEL
Sbjct: 664 ELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVEL 723
Query: 687 KNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSE 746
+NEVH+FYSG+T HPQ+K+IY FLETL + IKAAGY+PDTNS+HDVED V+E LL+SHSE
Sbjct: 724 QNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSVHDVEDVVKEQLLNSHSE 783
Query: 747 KLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVC 806
KLAIAF LLN+SPG+TIH+RKNLRVCGDCHNATKYISLVT REIIVRDM RFH FK+G C
Sbjct: 784 KLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTC 843
Query: 807 SCGDYW 812
SCGDYW
Sbjct: 844 SCGDYW 849
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1290 bits (3338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/787 (74%), Positives = 702/787 (89%)
Query: 26 HTLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKY 85
HTLS+RA+IPS +Y+HP+A+LLE+CTS+KEL +I+PL+IK+GL ++HLFQTKLVSLF KY
Sbjct: 35 HTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY 94
Query: 86 NSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLL 145
S+++AARVFEPI DKLDALYHTMLKGYAK +SL+ A++FL RMRYDDV PVVYN+TYLL
Sbjct: 95 GSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLL 154
Query: 146 KVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLV 205
KVCGD +++RGKEIHGQLI N F+ ++FAMTGVVNMYAKC QI++AYKMFDRMPERDLV
Sbjct: 155 KVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLV 214
Query: 206 SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYA 265
SWNTI+AGF+QNGFA+ AL+LV RM +EG+R D IT+V++LPA A+VG L +GK++HGYA
Sbjct: 215 SWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYA 274
Query: 266 MRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAM 325
+RAGF +VN+STAL DMY+KCG VETARL+FDGM + VVSWNSM+ YV+ G PE+A+
Sbjct: 275 IRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334
Query: 326 RIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMY 385
+F+KML++G++PT VTIMEALHACADLGDLERG FVHK +DQL LG+D+S+ NSLISMY
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394
Query: 386 SKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMV 445
SKCK+VD A+DIF+ L G+T VSWNAMILGYAQNGRV+EALN F +M+S +KPDSFTMV
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMV 454
Query: 446 SVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER 505
SVIPALAELSV R+AKWIH L+IRSC +KN+FV TAL+DMY+KCGA+ AR LFDM+++R
Sbjct: 455 SVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR 514
Query: 506 HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYF 565
HV TWN MIDGYGTHGLG+AA++LF+KM +G +PNDIT+L ISACSHSGLV+EG+ +F
Sbjct: 515 HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHF 574
Query: 566 TSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKN 625
S+K+DYG+EP MDHYGAMVDLLGRAGR+ EAWDFI+ MPI PGITV+GAMLGACKIHKN
Sbjct: 575 KSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKN 634
Query: 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVE 685
+E+GEKAA +LFEL+PDEGGYHVLLANIYA+ S W K+A+VR MEKKGL+KTPGCS+VE
Sbjct: 635 IEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694
Query: 686 LKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHS 745
L+NEVHSFYSGST HPQSKRIY FLE L+ EIKAAGYVPDTN I DVED VQE LL+SHS
Sbjct: 695 LRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHS 754
Query: 746 EKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGV 805
EKLAIAFGLLN+SPG+TIH+RKNLRVCGDCHNATKYISLVTGREIIVRDM RFH FKNG+
Sbjct: 755 EKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGI 814
Query: 806 CSCGDYW 812
CSCGDYW
Sbjct: 815 CSCGDYW 821
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1285 bits (3326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/787 (74%), Positives = 700/787 (88%)
Query: 26 HTLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKY 85
HTLS+RA+IPS +Y+HP+A+LLE+CTS+KEL +I+PL+IK+GL ++HLFQTKLVSLF KY
Sbjct: 35 HTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY 94
Query: 86 NSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLL 145
S+++AARVFEPI DKLDALYHTMLKGYAK +SL+ A++FL RMRYDDV PVVYN+TYLL
Sbjct: 95 GSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLL 154
Query: 146 KVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLV 205
KVCGD +++RGKEIHGQLI N F+ ++FAMTGVVNMYAKC QI++AYKMFDRMPERDLV
Sbjct: 155 KVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLV 214
Query: 206 SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYA 265
SWNTI+AGF+QNGFA+ AL+LV RM +EG+R D IT+V++LPA A+VG L +GK++HGYA
Sbjct: 215 SWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYA 274
Query: 266 MRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAM 325
+RAGF +VN+STAL DMY+KCG VETARL+FDGM + VVSWNSM+ YV+ G PE+A+
Sbjct: 275 IRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334
Query: 326 RIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMY 385
+F+KML++G++PT VTIMEALHACADLGDLERG FVHK +DQL LG+D+S+ NSLISMY
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394
Query: 386 SKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMV 445
SKCK+VD A+DIF+ L G+T VSWNAMILGYAQNGRV+EALN F +M+S +KPDSFTMV
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMV 454
Query: 446 SVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER 505
SVIPALAELSV R+AKWIH L+IRSC +KN+FV TAL+DMY+KCGA+ AR LFDM+++R
Sbjct: 455 SVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR 514
Query: 506 HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYF 565
HV TWN MIDGYGTHGLG+AA++LF+KM +G +PNDIT+L ISACSHSGLV+EG+ +F
Sbjct: 515 HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHF 574
Query: 566 TSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKN 625
S+K+DYG+EP MDHYGAMVDLLGRAGR+ EAWDFI+ MPI PGITV+GA GACKIHKN
Sbjct: 575 KSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKN 634
Query: 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVE 685
+E+GEKAA +LFEL+PDEGGYHVLLANIYA+ S W K+A+VR MEKKGL+KTPGCS+VE
Sbjct: 635 IEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694
Query: 686 LKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHS 745
L+NEVHSFYSGST HPQSKRIY FLE L+ EIKAAGYVPDTN I DVED VQE LL+SHS
Sbjct: 695 LRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHS 754
Query: 746 EKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGV 805
EKLAIAFGLLN+SPG+TIH+RKNLRVCGDCHNATKYISLVTGREIIVRDM RFH FKNG+
Sbjct: 755 EKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGI 814
Query: 806 CSCGDYW 812
CSCGDYW
Sbjct: 815 CSCGDYW 821
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/783 (71%), Positives = 678/783 (86%)
Query: 30 QRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLS 89
QR +IPS +YRHPSA+LLE+CTSLKEL +ILPLIIK+G ++HLFQTKL+SLFCK+NS++
Sbjct: 34 QRIFIPSHVYRHPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSIT 93
Query: 90 DAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCG 149
+AARVFEP+ KLD LYHTMLKGYAK ++L DAV F RMR D+V PVVY++TYLL++ G
Sbjct: 94 EAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSG 153
Query: 150 DVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNT 209
+ ++RRG+EIHG +I NGF +LFAMT VVN+YAKC QIE+AYKMF+RMP+RDLVSWNT
Sbjct: 154 ENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNT 213
Query: 210 IVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAG 269
+VAG+AQNGFA A+ +V +M E G++ D IT+VS+LPAVA++ +LRIG+++HGYA RAG
Sbjct: 214 VVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAG 273
Query: 270 FDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQ 329
F+ +VNV+TA++D Y KCG V +ARLVF GM SRNVVSWN+MI Y + G EEA F
Sbjct: 274 FEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFL 333
Query: 330 KMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCK 389
KMLD+GVEPTNV++M ALHACA+LGDLERG +VH+LLD+ K+G DVS+ NSLISMYSKCK
Sbjct: 334 KMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCK 393
Query: 390 KVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIP 449
+VD AA +F L+ KT+V+WNAMILGYAQNG VNEALN FC+M+S +IKPDSFT+VSVI
Sbjct: 394 RVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVIT 453
Query: 450 ALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTT 509
ALA+LSV R AKWIH L IR+ +KNVFV TALID +AKCGA+ TAR LFD+M ERHV T
Sbjct: 454 ALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT 513
Query: 510 WNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLK 569
WN MIDGYGT+G G+ A++LFN+M G KPN+ITFL I+ACSHSGLVEEG++YF S+K
Sbjct: 514 WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMK 573
Query: 570 KDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELG 629
++YG+EP MDHYGAMVDLLGRAGRL++AW FIQ MP++PGITV GAMLGAC+IHKNVELG
Sbjct: 574 ENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELG 633
Query: 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNE 689
EK A+ LF+LDPD+GGYHVLLAN+YA+ASMWDK+A+VRT MEKKG+QKTPGCSLVEL+NE
Sbjct: 634 EKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNE 693
Query: 690 VHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSEKLA 749
VH+FYSGST HPQSKRIY +LETL DE+KAAGYVPDTNSIHDVE+ V+E LLSSHSE+LA
Sbjct: 694 VHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSIHDVEEDVKEQLLSSHSERLA 753
Query: 750 IAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCG 809
IAFGLLN+ G+ IHIRKNLRVCGDCH ATKYISLVTGREIIVRD+ RFH FKNG+CSCG
Sbjct: 754 IAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCG 813
Query: 810 DYW 812
DYW
Sbjct: 814 DYW 816
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1206 bits (3120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/789 (70%), Positives = 665/789 (84%)
Query: 24 HKHTLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFC 83
H+H LS+R YIP+ +Y HP+ALLLE C+SLKELR+ILPL+ K+GL +H FQTKLVSLFC
Sbjct: 21 HRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFC 80
Query: 84 KYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTY 143
+Y S+ +AARVFEPI KL+ LYHTMLKG+AK + LD A+ F +RMRYDDV PVVYN+TY
Sbjct: 81 RYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY 140
Query: 144 LLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD 203
LLKVCGD E+R GKEIHG L+ +GFSLDLFAMTG+ NMYAKC Q+ EA K+FDRMPERD
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200
Query: 204 LVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHG 263
LVSWNTIVAG++QNG A +AL++V M EE + FITIVS+LPAV+ + + +GK +HG
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHG 260
Query: 264 YAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEE 323
YAMR+GFDS+VN+STALVDMYAKCG +ETAR +FDGM RNVVSWNSMI AYV+ NP+E
Sbjct: 261 YAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKE 320
Query: 324 AMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLIS 383
AM IFQKMLD+GV+PT+V++M ALHACADLGDLERG F+HKL +L L +VS+ NSLIS
Sbjct: 321 AMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLIS 380
Query: 384 MYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT 443
MY KCK+VD AA +F KLQ +TLVSWNAMILG+AQNGR +ALNYF +MRS+ +KPD+FT
Sbjct: 381 MYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFT 440
Query: 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN 503
VSVI A+AELS+ +AKWIH +V+RSC +KNVFV TAL+DMYAKCGA+ AR +FDMM+
Sbjct: 441 YVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS 500
Query: 504 ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIH 563
ERHVTTWN MIDGYGTHG GKAA+ELF +M +G KPN +TFL ISACSHSGLVE G+
Sbjct: 501 ERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLK 560
Query: 564 YFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH 623
F +K++Y IE MDHYGAMVDLLGRAGRLNEAWDFI +MP++P + V+GAMLGAC+IH
Sbjct: 561 CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIH 620
Query: 624 KNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSL 683
KNV EKAA RLFEL+PD+GGYHVLLANIY AASMW+K+ +VR M ++GL+KTPGCS+
Sbjct: 621 KNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSM 680
Query: 684 VELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSS 743
VE+KNEVHSF+SGST HP SK+IY FLE LI IK AGYVPDTN + VE+ V+E LLS+
Sbjct: 681 VEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLST 740
Query: 744 HSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKN 803
HSEKLAI+FGLLN++ G+TIH+RKNLRVC DCHNATKYISLVTGREI+VRDM RFH FKN
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800
Query: 804 GVCSCGDYW 812
G CSCGDYW
Sbjct: 801 GACSCGDYW 809
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/789 (70%), Positives = 669/789 (84%)
Query: 24 HKHTLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFC 83
H+H LSQR YIP+ +Y HP+ALLLE C+SLKELR ILPLI K+GL +HLFQTKLVSLFC
Sbjct: 21 HRHFLSQRNYIPANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFC 80
Query: 84 KYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTY 143
+Y S+ +AARVFEPI KL+ LY+TMLKG+AK + LD A+ F +RMR D+V PVVYN+TY
Sbjct: 81 RYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTY 140
Query: 144 LLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD 203
LLKVCGD E+R GKEIHG L+ +GFSLDLFAMTG+ NMYAKC Q+ EA K+FDRMPERD
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERD 200
Query: 204 LVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHG 263
LVSWNTIVAG++QNG A +AL++V M EE + FITIVS+LPAV+ + +RIGK +HG
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHG 260
Query: 264 YAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEE 323
YAMRAGFDS+VN++TALVDMYAKCG ++TARL+FDGM RNVVSWNSMI AYV+ NP+E
Sbjct: 261 YAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKE 320
Query: 324 AMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLIS 383
AM IFQKMLD+GV+PT+V++M ALHACADLGDLERG F+HKL +L+L +VS+ NSLIS
Sbjct: 321 AMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLIS 380
Query: 384 MYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT 443
MY KCK+VD AA +F KLQ +T+VSWNAMILG+AQNGR EALNYF +M+++ +KPD+FT
Sbjct: 381 MYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFT 440
Query: 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN 503
VSVI A+AELS+ +AKWIH +V+R+C +KNVFV TAL+DMYAKCGA+ AR +FDMM+
Sbjct: 441 YVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS 500
Query: 504 ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIH 563
ERHVTTWN MIDGYGTHG+GKAA+ELF +M +G +PN +TFL ISACSHSGLVE G+
Sbjct: 501 ERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLK 560
Query: 564 YFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH 623
F +K++Y IEP MDHYGAMVDLLGRAGRLNEAWDFI +MP++P + V+GAMLGAC+IH
Sbjct: 561 CFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIH 620
Query: 624 KNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSL 683
KNV EK A RLFEL+P++GGYHVLLANIY AASMW+K+ +VR M ++GL+KTPGCS+
Sbjct: 621 KNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSM 680
Query: 684 VELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSS 743
VE+KNEVHSF+SGST HP SK+IY FLE LI +IK AGYVPDTN I +ED V+E LLSS
Sbjct: 681 VEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILGLEDDVKEQLLSS 740
Query: 744 HSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKN 803
HSEKLAI+FGLLN++ G+TIH+RKNLRVC DCHNATKYISLVTGREIIVRDM RFH FKN
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKN 800
Query: 804 GVCSCGDYW 812
G CSCGDYW
Sbjct: 801 GACSCGDYW 809
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/704 (78%), Positives = 624/704 (88%)
Query: 109 MLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNG 168
MLKGYAK +SLD A+SF RM++D V PVVYN+TYLLK+CGD +++RGKEIHG +I +G
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 169 FSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVT 228
FS +LFAMTGVVNMYAKC QI +AY MFDRMPERDLV WNT+++G+AQNGFA++AL LV
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 229 RMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCG 288
RM EEG R D ITIVSILPAVA+ LRIG AVHGY +RAGF+S+VNVSTALVDMY+KCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180
Query: 289 RVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALH 348
V AR++FDGM R VVSWNSMI YV+ G+ E AM IFQKMLD+GV+PTNVT+M ALH
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240
Query: 349 ACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVS 408
ACADLGDLERG FVHKL+DQLKL +DVS+ NSLISMYSKCK+VD AADIF L+ KTLVS
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300
Query: 409 WNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVI 468
WNAMILGYAQNG VNEALN FC+M+S+NIKPDSFTMVSVIPALAELS+ R AKWIH LVI
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360
Query: 469 RSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVE 528
R +KNVFVMTAL+DMYAKCGA+ TAR LFDMMN RHV TWN MIDGYGTHGLGK +VE
Sbjct: 361 RRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVE 420
Query: 529 LFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL 588
LF +M +G KPNDITFLCA+SACSHSGLVEEG+ +F S+KKDYGIEP MDHYGAMVDLL
Sbjct: 421 LFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLL 480
Query: 589 GRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648
GRAGRLN+AWDFIQKMPI+PGITV+GAMLGACKIHKNV+LGEKAA +F+L+PD+GGYHV
Sbjct: 481 GRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHV 540
Query: 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYT 708
LLANIYA ASMW K+AKVRTIMEK GLQKTPGCSLVE+ NEVHSFYSG+T HPQSK+IY+
Sbjct: 541 LLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYS 600
Query: 709 FLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKN 768
+LETL+DEI+AAGYVPDTNSIHDVED V+ LL++HSEKLAIAFGLLN+S G+ IHIRKN
Sbjct: 601 YLETLVDEIRAAGYVPDTNSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKN 660
Query: 769 LRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
LRVCGDCHNATKYISLVTGREIIVRDMHRFH FK+GVCSCGDYW
Sbjct: 661 LRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/785 (68%), Positives = 646/785 (82%), Gaps = 3/785 (0%)
Query: 30 QRAYIPSRIY--RHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNS 87
Q IP+R+Y RHPS +LLE CTS KEL +ILP IIK+G ++HLFQTK++SLFCK+ S
Sbjct: 35 QSNSIPTRVYSHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGS 94
Query: 88 LSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKV 147
S+AARVFE + KLD LYH MLKGYAK +SL DA+ F +RM D+V VV +Y LL++
Sbjct: 95 NSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQL 154
Query: 148 CGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSW 207
CG+ ++++G+EIHG +I NGF +LF MT V+++YAKC QI+ AYKMF+RM +DLVSW
Sbjct: 155 CGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSW 214
Query: 208 NTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMR 267
T+VAG+AQNG A+ AL LV +M E G++ D +T+VSILPAVA++ +LRIG+++HGYA R
Sbjct: 215 TTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFR 274
Query: 268 AGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRI 327
+GF+S+VNV+ AL+DMY KCG ARLVF GM+S+ VVSWN+MI + G EEA
Sbjct: 275 SGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFAT 334
Query: 328 FQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSK 387
F KMLD+G PT VT+M L ACA+LGDLERG FVHKLLD+LKL ++VS+ NSLISMYSK
Sbjct: 335 FLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSK 394
Query: 388 CKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSV 447
CK+VD AA IF+ L+ KT V+WNAMILGYAQNG V EALN FC M+S+ IK D FT+V V
Sbjct: 395 CKRVDIAASIFNNLE-KTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGV 453
Query: 448 IPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHV 507
I ALA+ SV R AKWIH L +R+C + NVFV TAL+DMYAKCGA+ TAR LFDMM ERHV
Sbjct: 454 ITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHV 513
Query: 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTS 567
TWN MIDGYGTHG+GK ++LFN+M +G KPNDITFL ISACSHSG VEEG+ F S
Sbjct: 514 ITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKS 573
Query: 568 LKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVE 627
+++DY +EP MDHY AMVDLLGRAG+L++AW+FIQ+MPI+PGI+V GAMLGACKIHKNVE
Sbjct: 574 MQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVE 633
Query: 628 LGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELK 687
LGEKAA +LF+LDPDEGGYHVLLANIYA+ SMWDK+AKVRT ME KGL KTPGCS VEL+
Sbjct: 634 LGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELR 693
Query: 688 NEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSEK 747
NE+H+FYSGST HP+SK+IY FLETL DEIKAAGYVPD +SIHDVE+ V++ LLSSHSE+
Sbjct: 694 NEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEEDVKKQLLSSHSER 753
Query: 748 LAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCS 807
LAIAFGLLN+SPG+T+HIRKNLRVCGDCH+ TKYISLVTGREIIVRD+ RFH FKNG CS
Sbjct: 754 LAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCS 813
Query: 808 CGDYW 812
CGDYW
Sbjct: 814 CGDYW 818
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/709 (57%), Positives = 538/709 (75%), Gaps = 2/709 (0%)
Query: 106 YHTMLKGYAKFASLDDAVSFLIRMR-YDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQL 164
+H L+ A + L A++ M PV+ +T LLK+C ++ G+ +H QL
Sbjct: 192 HHARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQL 251
Query: 165 IVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELAL 224
G S + A T + NMYAKC + +A ++FDRMP RD V+WN +VAG+A+NG AE A+
Sbjct: 252 AARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAV 311
Query: 225 DLVTRMHEE-GRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDM 283
+V RM EE G R D +T+VS+LPA A+ +L + VH +A+R GFD VNVSTA++D+
Sbjct: 312 GMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDV 371
Query: 284 YAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTI 343
Y KCG V++AR VFDGM+ RN VSWN+MI Y E G+ EA+ +F++M+ +GV+ T+V++
Sbjct: 372 YCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSV 431
Query: 344 MEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG 403
+ ALHAC +LG L+ G VH+LL ++ L ++V++ N+LI+MY KCK+ D AA +F +L
Sbjct: 432 LAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGY 491
Query: 404 KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWI 463
KT VSWNAMILG QNG +A+ F +M+ +N+KPDSFT+VS+IPALA++S A+WI
Sbjct: 492 KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWI 551
Query: 464 HALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLG 523
H IR +++V+V+TALIDMYAKCG V AR+LF+ +RHV TWN MI GYG+HG G
Sbjct: 552 HGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSG 611
Query: 524 KAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA 583
K AVELF +M PN+ TFL +SACSH+GLV+EG YF+S+K+DYG+EP M+HYG
Sbjct: 612 KVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGT 671
Query: 584 MVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643
MVDLLGRAG+L+EAW FIQKMP+EPGI+V+GAMLGACK+HKNVEL E++A R+FEL+P+E
Sbjct: 672 MVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEE 731
Query: 644 GGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQS 703
G YHVLLANIYA AS+W +A+VRT MEKKGLQKTPG S+V+LKNE+H+FYSGST H Q+
Sbjct: 732 GVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQA 791
Query: 704 KRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTI 763
K IY L LI+EIKA GYVPDT+SIHDVED V+ LL++HSEKLAIA+GL+ ++PG+TI
Sbjct: 792 KDIYARLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTI 851
Query: 764 HIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
I+KNLRVC DCHNATK ISLVTGREII+RD+ RFH FK+G CSCGDYW
Sbjct: 852 QIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/708 (57%), Positives = 538/708 (75%), Gaps = 1/708 (0%)
Query: 106 YHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLI 165
+H L+ A + L A++ + M PV+ +T LLK+C G++ G+ +H QL
Sbjct: 27 HHARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLA 86
Query: 166 VNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALD 225
G + A T + NMYAKC + +A ++FDRMP RD V+WN +VAG+A+NG A +A++
Sbjct: 87 ARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAME 146
Query: 226 LVTRMHEE-GRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMY 284
+V RM EE G R D IT+VS+LPA AN +L + H +A+R+G + +VNV+TA++D Y
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAY 206
Query: 285 AKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIM 344
KCG + AR+VFD M ++N VSWN+MI Y + G+ EA+ +F +M+++GV+ T+V+++
Sbjct: 207 CKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266
Query: 345 EALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK 404
AL AC +LG L+ G+ VH+LL ++ L ++VS+ N+LI+MYSKCK+VD A+ +F +L +
Sbjct: 267 AALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRR 326
Query: 405 TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIH 464
T VSWNAMILG AQNG +A+ F +M+ +N+KPDSFT+VSVIPALA++S A+WIH
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386
Query: 465 ALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGK 524
IR +++V+V+TALIDMYAKCG V AR LF+ ERHV TWN MI GYG+HG GK
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446
Query: 525 AAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAM 584
AAVELF +M PN+ TFL +SACSH+GLV+EG YFTS+K+DYG+EP M+HYG M
Sbjct: 447 AAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTM 506
Query: 585 VDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG 644
VDLLGRAG+L+EAW FIQKMP++PG++V+GAMLGACK+HKNVEL E++A ++FEL P EG
Sbjct: 507 VDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEG 566
Query: 645 GYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSK 704
YHVLLANIYA ASMW +A+VRT MEK GLQKTPG S+++LKNE+H+FYSGST H Q+K
Sbjct: 567 VYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAK 626
Query: 705 RIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIH 764
IY+ L LI+EIKA GYVPDT+SIHDVED V+ LL++HSEKLAIAFGL+ ++PG+TI
Sbjct: 627 EIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQ 686
Query: 765 IRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
I+KNLRVC DCHNATK ISLVTGREII+RD+ RFH FK+G CSCGDYW
Sbjct: 687 IKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 812 | ||||||
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.971 | 0.975 | 0.705 | 1.09999999981e-314 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.932 | 0.955 | 0.387 | 3.7e-151 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.903 | 0.824 | 0.401 | 7.6e-151 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.895 | 0.839 | 0.383 | 1.6e-150 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.943 | 0.879 | 0.371 | 6.2e-149 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.933 | 0.921 | 0.386 | 7.9e-149 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.942 | 0.9 | 0.373 | 1.6e-141 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.944 | 0.818 | 0.351 | 1.1e-137 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.959 | 0.782 | 0.372 | 1.1e-135 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.945 | 0.870 | 0.346 | 6e-135 |
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3018 (1067.4 bits), Expect = 1.1e-314, P = 1.1e-314
Identities = 557/789 (70%), Positives = 665/789 (84%)
Query: 24 HKHTLSQRAYIPSRIYRHPSALLLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFC 83
H+H LS+R YIP+ +Y HP+ALLLE C+SLKELR+ILPL+ K+GL +H FQTKLVSLFC
Sbjct: 21 HRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFC 80
Query: 84 KYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTY 143
+Y S+ +AARVFEPI KL+ LYHTMLKG+AK + LD A+ F +RMRYDDV PVVYN+TY
Sbjct: 81 RYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY 140
Query: 144 LLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD 203
LLKVCGD E+R GKEIHG L+ +GFSLDLFAMTG+ NMYAKC Q+ EA K+FDRMPERD
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200
Query: 204 LVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHG 263
LVSWNTIVAG++QNG A +AL++V M EE + FITIVS+LPAV+ + + +GK +HG
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHG 260
Query: 264 YAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEE 323
YAMR+GFDS+VN+STALVDMYAKCG +ETAR +FDGM RNVVSWNSMI AYV+ NP+E
Sbjct: 261 YAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKE 320
Query: 324 AMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLIS 383
AM IFQKMLD+GV+PT+V++M ALHACADLGDLERG F+HKL +L L +VS+ NSLIS
Sbjct: 321 AMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLIS 380
Query: 384 MYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT 443
MY KCK+VD AA +F KLQ +TLVSWNAMILG+AQNGR +ALNYF +MRS+ +KPD+FT
Sbjct: 381 MYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFT 440
Query: 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN 503
VSVI A+AELS+ +AKWIH +V+RSC +KNVFV TAL+DMYAKCGA+ AR +FDMM+
Sbjct: 441 YVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS 500
Query: 504 ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIH 563
ERHVTTWN MIDGYGTHG GKAA+ELF +M +G KPN +TFL ISACSHSGLVE G+
Sbjct: 501 ERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLK 560
Query: 564 YFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH 623
F +K++Y IE MDHYGAMVDLLGRAGRLNEAWDFI +MP++P + V+GAMLGAC+IH
Sbjct: 561 CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIH 620
Query: 624 KNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSL 683
KNV EKAA RLFEL+PD+GGYHVLLANIY AASMW+K+ +VR M ++GL+KTPGCS+
Sbjct: 621 KNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSM 680
Query: 684 VELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSS 743
VE+KNEVHSF+SGST HP SK+IY FLE LI IK AGYVPDTN + VE+ V+E LLS+
Sbjct: 681 VEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLST 740
Query: 744 HSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKN 803
HSEKLAI+FGLLN++ G+TIH+RKNLRVC DCHNATKYISLVTGREI+VRDM RFH FKN
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800
Query: 804 GVCSCGDYW 812
G CSCGDYW
Sbjct: 801 GACSCGDYW 809
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
Identities = 297/767 (38%), Positives = 453/767 (59%)
Query: 51 TSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPI--PDKLDALYHT 108
TS+ L + II G + TKL ++ A +F + PD L++
Sbjct: 31 TSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVF--LFNV 88
Query: 109 MLKGYAKFASLDDAVSFLIRMRYD-DVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVN 167
+++G++ S ++S +R D+ P Y + + + R G+ IHGQ +V+
Sbjct: 89 LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148
Query: 168 GFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLV 227
G +L + +V MY K ++E+A K+FDRMPE+D + WNT+++G+ +N ++ +
Sbjct: 149 GCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVF 208
Query: 228 TRM-HEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAK 286
+ +E R D T++ ILPAVA + LR+G +H A + G S V T + +Y+K
Sbjct: 209 RDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSK 268
Query: 287 CGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEA 346
CG+++ +F + ++V++N+MI Y G E ++ +F++++ G + T++
Sbjct: 269 CGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSL 328
Query: 347 LHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTL 406
+ G L +H + + S++ +L ++YSK +++ A +F + K+L
Sbjct: 329 VPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSL 385
Query: 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHAL 466
SWNAMI GY QNG +A++ F +M+ P+ T+ ++ A A+L + KW+H L
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445
Query: 467 VIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAA 526
V + FE +++V TALI MYAKCG++ AR LFD+M +++ TWN MI GYG HG G+ A
Sbjct: 446 VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEA 505
Query: 527 VELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVD 586
+ +F +ML P +TFLC + ACSH+GLV+EG F S+ YG EP + HY MVD
Sbjct: 506 LNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVD 565
Query: 587 LLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646
+LGRAG L A FI+ M IEPG +V+ +LGAC+IHK+ L + +LFELDPD GY
Sbjct: 566 ILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGY 625
Query: 647 HVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRI 706
HVLL+NI++A + + A VR +K+ L K PG +L+E+ H F SG HPQ K I
Sbjct: 626 HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEI 685
Query: 707 YTFLETLIDEIKAAGYVPDTN-SIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHI 765
Y LE L +++ AGY P+T ++HDVE+ +E ++ HSE+LAIAFGL+ + PG+ I I
Sbjct: 686 YEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRI 745
Query: 766 RKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
KNLRVC DCH TK IS +T R I+VRD +RFH FK+GVCSCGDYW
Sbjct: 746 IKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
Identities = 302/753 (40%), Positives = 461/753 (61%)
Query: 78 LVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPV 137
LV+L+ K +VF+ I ++ +++++ F + A+ M ++V P
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPS 198
Query: 138 VYNYTYLLKVCGDVGE---IRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYK 194
+ ++ C ++ + GK++H + G L+ F + +V MY K G++ +
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKV 257
Query: 195 MFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGS 254
+ RDLV+WNT+++ QN AL+ + M EG D TI S+LPA +++
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317
Query: 255 LRIGKAVHGYAMRAG-FDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIA 313
LR GK +H YA++ G D V +ALVDMY C +V + R VFDGM R + WN+MIA
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 314 AYVEGGNPEEAMRIFQKMLDQ-GVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLG 372
Y + + +EA+ +F M + G+ + T+ + AC G R +H + + L
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 373 TDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKM 432
D + N+L+ MYS+ K+D A IF K++ + LV+WN MI GY + +AL KM
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497
Query: 433 R------SK-----NIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTA 481
+ SK ++KP+S T+++++P+ A LS + K IHA I++ +V V +A
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 557
Query: 482 LIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN 541
L+DMYAKCG + +R +FD + +++V TWNV+I YG HG G+ A++L M+ KPN
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617
Query: 542 DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFI 601
++TF+ +ACSHSG+V+EG+ F +K DYG+EP DHY +VDLLGRAGR+ EA+ +
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLM 677
Query: 602 QKMPIEPGIT-VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMW 660
MP + + ++LGA +IH N+E+GE AA L +L+P+ ++VLLANIY++A +W
Sbjct: 678 NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLW 737
Query: 661 DKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAA 720
DK +VR M+++G++K PGCS +E +EVH F +G + HPQS+++ +LETL + ++
Sbjct: 738 DKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKE 797
Query: 721 GYVPDTNSI-HDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNAT 779
GYVPDT+ + H+VE+ +E LL HSEKLAIAFG+LN+SPG+ I + KNLRVC DCH AT
Sbjct: 798 GYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLAT 857
Query: 780 KYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
K+IS + REII+RD+ RFH FKNG CSCGDYW
Sbjct: 858 KFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1469 (522.2 bits), Expect = 1.6e-150, P = 1.6e-150
Identities = 282/736 (38%), Positives = 453/736 (61%)
Query: 79 VSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRY-DDVAPV 137
+++F ++ +L DA VF + ++ ++ ++ GYAK D+A+ RM + V P
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195
Query: 138 VYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFD 197
VY + +L+ CG + ++ RGKE+H ++ G+ LD+ + ++ MY KCG ++ A +FD
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255
Query: 198 RMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRI 257
RMP RD++SWN +++G+ +NG L+L M D +T+ S++ A +G R+
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315
Query: 258 GKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVE 317
G+ +H Y + GF ++V +L MY G A +F M+ +++VSW +MI+ Y
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEY 375
Query: 318 GGNPEEAMRIFQKMLDQ-GVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVS 376
P++A+ + +M+DQ V+P +T+ L ACA LGDL+ G+ +HKL + +L + V
Sbjct: 376 NFLPDKAIDTY-RMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVI 434
Query: 377 MTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436
+ N+LI+MYSKCK +D+A DIF + K ++SW ++I G N R EAL + +M+
Sbjct: 435 VANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKM-T 493
Query: 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTAR 496
++P++ T+ + + A A + + K IHA V+R+ + F+ AL+DMY +CG + TA
Sbjct: 494 LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAW 553
Query: 497 ALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSG 556
+ F+ ++ VT+WN+++ GY G G VELF++M++ +P++ITF+ + CS S
Sbjct: 554 SQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQ 612
Query: 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAM 616
+V +G+ YF+ ++ DYG+ P + HY +VDLLGRAG L EA FIQKMP+ P V+GA+
Sbjct: 613 MVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGAL 671
Query: 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676
L AC+IH ++LGE +A +FELD GY++LL N+YA W ++AKVR +M++ GL
Sbjct: 672 LNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLT 731
Query: 677 KTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGY--VPDTNSIHDVED 734
GCS VE+K +VH+F S HPQ+K I T LE +++ G + +++S+ + E
Sbjct: 732 VDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETE- 790
Query: 735 YVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRD 794
++ + HSE+ AIAFGL+N+ PG I + KNL +C +CH+ K+IS REI VRD
Sbjct: 791 ISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRD 850
Query: 795 MHRFHCFKNGVCSCGD 810
FH FK+G CSCGD
Sbjct: 851 AEHFHHFKDGECSCGD 866
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
Identities = 287/773 (37%), Positives = 466/773 (60%)
Query: 46 LLEVCT---SLKELRRILPLIIKSG-LCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDK 101
+L++C SLK+ + + I +G + D +L +KL ++ L +A+RVF+ + +
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNL-GSKLSLMYTNCGDLKEASRVFDEVKIE 158
Query: 102 LDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIH 161
++ ++ AK ++ +M V Y ++ + K + + G+++H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218
Query: 162 GQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAE 221
G ++ +GF +V Y K +++ A K+FD M ERD++SWN+I+ G+ NG AE
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 278
Query: 222 LALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALV 281
L + +M G D TIVS+ A+ + +G+AVH ++A F L+
Sbjct: 279 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLL 338
Query: 282 DMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNV 341
DMY+KCG +++A+ VF M R+VVS+ SMIA Y G EA+++F++M ++G+ P
Sbjct: 339 DMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398
Query: 342 TIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKL 401
T+ L+ CA L+ G VH+ + + LG D+ ++N+L+ MY+KC + A +FS++
Sbjct: 399 TVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM 458
Query: 402 QGKTLVSWNAMILGYAQNGRVNEALNYF-CKMRSKNIKPDSFTMVSVIPALAELSVIRYA 460
+ K ++SWN +I GY++N NEAL+ F + K PD T+ V+PA A LS
Sbjct: 459 RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG 518
Query: 461 KWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTH 520
+ IH ++R+ + + V +L+DMYAKCGA+ A LFD + + + +W VMI GYG H
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 578
Query: 521 GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDH 580
G GK A+ LFN+M + + ++I+F+ + ACSHSGLV+EG +F ++ + IEP ++H
Sbjct: 579 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 638
Query: 581 YGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELD 640
Y +VD+L R G L +A+ FI+ MPI P T++GA+L C+IH +V+L EK A ++FEL+
Sbjct: 639 YACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE 698
Query: 641 PDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKH 700
P+ GY+VL+ANIYA A W+++ ++R + ++GL+K PGCS +E+K V+ F +G + +
Sbjct: 699 PENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSN 758
Query: 701 PQSKRIYTFLETLIDEIKAAGYVPDTN-SIHDVEDYVQENLLSSHSEKLAIAFGLLNSSP 759
P+++ I FL + + GY P T ++ D E+ +E L HSEKLA+A G+++S
Sbjct: 759 PETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGH 818
Query: 760 GSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
G I + KNLRVCGDCH K++S +T REI++RD +RFH FK+G CSC +W
Sbjct: 819 GKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
Identities = 299/773 (38%), Positives = 466/773 (60%)
Query: 46 LLEVCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDAL 105
L CT+L+ + + ++ S KLV+L+C +++ A F+ I ++
Sbjct: 60 LFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYA 119
Query: 106 YHTMLKGYAKFASLDDAVS-FLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQL 164
++ M+ GY + + + + F + M + P + +LK C V + G +IH
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLA 176
Query: 165 IVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELAL 224
+ GF D++ ++++Y++ + A +FD MP RD+ SWN +++G+ Q+G A+ AL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236
Query: 225 DLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMY 284
L + R D +T+VS+L A G G +H Y+++ G +S + VS L+D+Y
Sbjct: 237 TLSNGL----RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292
Query: 285 AKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIM 344
A+ GR+ + VFD M R+++SWNS+I AY P A+ +FQ+M ++P +T++
Sbjct: 293 AEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLI 352
Query: 345 EALHACADLGDLERGIFVHKLLDQLKLG---TDVSMTNSLISMYSKCKKVDRAADIFSKL 401
+ LGD+ V L+ G D+++ N+++ MY+K VD A +F+ L
Sbjct: 353 SLASILSQLGDIRACRSVQGFT--LRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 402 QGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKN-IKPDSFTMVSVIPALAELSVIRYA 460
++SWN +I GYAQNG +EA+ + M + I + T VSV+PA ++ +R
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470
Query: 461 KWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTH 520
+H ++++ +VFV+T+L DMY KCG + A +LF + + WN +I +G H
Sbjct: 471 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFH 530
Query: 521 GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDH 580
G G+ AV LF +ML+ KP+ ITF+ +SACSHSGLV+EG F ++ DYGI P + H
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKH 590
Query: 581 YGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELD 640
YG MVD+ GRAG+L A FI+ M ++P +++GA+L AC++H NV+LG+ A+ LFE++
Sbjct: 591 YGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 650
Query: 641 PDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKH 700
P+ GYHVLL+N+YA+A W+ + ++R+I KGL+KTPG S +E+ N+V FY+G+ H
Sbjct: 651 PEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTH 710
Query: 701 PQSKRIYTFLETLIDEIKAAGYVPDTNSI-HDVEDYVQENLLSSHSEKLAIAFGLLNSSP 759
P + +Y L L ++K GYVPD + DVED +E++L SHSE+LAIAF L+ +
Sbjct: 711 PMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPA 770
Query: 760 GSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
+TI I KNLRVCGDCH+ TK+IS +T REIIVRD +RFH FKNGVCSCGDYW
Sbjct: 771 KTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
Identities = 293/785 (37%), Positives = 453/785 (57%)
Query: 46 LLEVCTSLKELRR---ILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIP--D 100
LL+ C ++ R + +I+ + + L+SL+ K + A VFE +
Sbjct: 68 LLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFG 127
Query: 101 KLDAL-YHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKE 159
K D + + M+ Y DA+ + + P Y YT +++ C + + G+
Sbjct: 128 KRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRV 187
Query: 160 IHGQLIVNG-FSLDLFAMTGVVNMYAKC-GQIEEAYKMFDRMPERDLVSWNTIVAGFAQN 217
G L+ G F D+ +++M+ K E AYK+FD+M E ++V+W ++ Q
Sbjct: 188 TLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM 247
Query: 218 GFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVS 277
GF A+ M G D T+ S+ A A + +L +GK +H +A+R+G + +V
Sbjct: 248 GFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL--VDDVE 305
Query: 278 TALVDMYAKC---GRVETARLVFDGMKSRNVVSWNSMIAAYVEGGN-PEEAMRIFQKMLD 333
+LVDMYAKC G V+ R VFD M+ +V+SW ++I Y++ N EA+ +F +M+
Sbjct: 306 CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT 365
Query: 334 QG-VEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVD 392
QG VEP + T A AC +L D G V + L ++ S+ NS+ISM+ K +++
Sbjct: 366 QGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRME 425
Query: 393 RAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALA 452
A F L K LVS+N + G +N +A ++ + + +FT S++ +A
Sbjct: 426 DAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA 485
Query: 453 ELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNV 512
+ IR + IH+ V++ N V ALI MY+KCG++ TA +F+ M R+V +W
Sbjct: 486 NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTS 545
Query: 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDY 572
MI G+ HG +E FN+M+E KPN++T++ +SACSH GLV EG +F S+ +D+
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDH 605
Query: 573 GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKA 632
I+P M+HY MVDLL RAG L +A++FI MP + + V+ LGAC++H N ELG+ A
Sbjct: 606 KIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLA 665
Query: 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHS 692
A ++ ELDP+E ++ L+NIYA A W++ ++R M+++ L K GCS +E+ +++H
Sbjct: 666 ARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHK 725
Query: 693 FYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSI-HDVEDY----VQENLLSSHSEK 747
FY G T HP + +IY L+ LI EIK GYVPDT+ + H +E+ +E LL HSEK
Sbjct: 726 FYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEK 785
Query: 748 LAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCS 807
+A+AFGL+++S + + KNLRVCGDCHNA KYIS V+GREI++RD++RFH FK+G CS
Sbjct: 786 IAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCS 845
Query: 808 CGDYW 812
C DYW
Sbjct: 846 CNDYW 850
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
Identities = 273/776 (35%), Positives = 452/776 (58%)
Query: 44 ALLLEVCTSLKEL---RRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPD 100
+L++ C LK+ R+I+ ++KSGL + + L+S+ ++ A +F+ + +
Sbjct: 164 SLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSE 223
Query: 101 KLDALYHTMLKGYAKFASLDDA--VSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGK 158
+ ++++ YA+ ++++ + L+R +D+V + LL V G V + G+
Sbjct: 224 RDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVST--LLSVLGHVDHQKWGR 281
Query: 159 EIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNG 218
IHG ++ GF + ++ MYA G+ EA +F +MP +DL+SWN+++A F +G
Sbjct: 282 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDG 341
Query: 219 FAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVST 278
+ AL L+ M G+ +++T S L A G+ +HG + +G +
Sbjct: 342 RSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGN 401
Query: 279 ALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEP 338
ALV MY K G + +R V M R+VV+WN++I Y E +P++A+ FQ M +GV
Sbjct: 402 ALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSS 461
Query: 339 TNVTIMEALHACADLGDL-ERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADI 397
+T++ L AC GDL ERG +H + +D + NSLI+MY+KC + + D+
Sbjct: 462 NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDL 521
Query: 398 FSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI 457
F+ L + +++WNAM+ A +G E L KMRS + D F+ + A A+L+V+
Sbjct: 522 FNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVL 581
Query: 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGY 517
+ +H L ++ FE + F+ A DMY+KCG +G + R + +WN++I
Sbjct: 582 EEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISAL 641
Query: 518 GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV 577
G HG + F++MLE KP +TF+ ++ACSH GLV++G+ Y+ + +D+G+EP
Sbjct: 642 GRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPA 701
Query: 578 MDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLF 637
++H ++DLLGR+GRL EA FI KMP++P V+ ++L +CKIH N++ G KAA L
Sbjct: 702 IEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLS 761
Query: 638 ELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGS 697
+L+P++ +VL +N++A W+ + VR M K ++K CS V+LK++V SF G
Sbjct: 762 KLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGD 821
Query: 698 TKHPQSKRIYTFLETLIDEIKAAGYVPDTN-SIHDVEDYVQENLLSSHSEKLAIAFGLLN 756
HPQ+ IY LE + IK +GYV DT+ ++ D ++ +E+ L +HSE+LA+A+ L++
Sbjct: 822 RTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMS 881
Query: 757 SSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
+ GST+ I KNLR+C DCH+ K++S V GR I++RD +RFH F+ G+CSC DYW
Sbjct: 882 TPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1329 (472.9 bits), Expect = 1.1e-135, P = 1.1e-135
Identities = 300/806 (37%), Positives = 462/806 (57%)
Query: 29 SQRAYIPSRIYRHPSALLLEVCTSLKE-----LRRILPLIIKSGLCDQHLFQTKLVSLFC 83
S Y SR + L+ SL E L +I+ I KSGL + LVS F
Sbjct: 195 SSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFA 254
Query: 84 KYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMR-YDDVAPVVYNYT 142
K SLS A +VF + + + ++ G + ++A + M DV+P +Y
Sbjct: 255 KSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYV 312
Query: 143 YLLK------VCGDVGEIRRGKEIHGQLIVNGFSLDLFAM-TGVVNMYAKCGQIEEAYKM 195
LL + +VG +++G+E+HG +I G + + G+VNMYAKCG I +A ++
Sbjct: 313 ILLSSFPEYSLAEEVG-LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRV 371
Query: 196 FDRMPERDLVSWNTIVAGFAQNG-FAELALDLVTRMHEEGRRGDFITIVSILPAVANVGS 254
F M ++D VSWN+++ G QNG F E + + G F T++S L + A++
Sbjct: 372 FYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSF-TLISSLSSCASLKW 430
Query: 255 LRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAA 314
++G+ +HG +++ G D V+VS AL+ +YA+ G + R +F M + VSWNS+I A
Sbjct: 431 AKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGA 490
Query: 315 YVEGGNP-EEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGT 373
EA+ F G + +T L A + L E G +H L + +
Sbjct: 491 LARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIAD 550
Query: 374 DVSMTNSLISMYSKCKKVDRAADIFSKL-QGKTLVSWNAMILGYAQNGRVNEALNYFCKM 432
+ + N+LI+ Y KC ++D IFS++ + + V+WN+MI GY N + +AL+ M
Sbjct: 551 EATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFM 610
Query: 433 RSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAV 492
+ DSF +V+ A A ++ + +HA +R+C E +V V +AL+DMY+KCG +
Sbjct: 611 LQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRL 670
Query: 493 GTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKM-LEGPTKPNDITFLCAISA 551
A F+ M R+ +WN MI GY HG G+ A++LF M L+G T P+ +TF+ +SA
Sbjct: 671 DYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSA 730
Query: 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGIT 611
CSH+GL+EEG +F S+ YG+ P ++H+ M D+LGRAG L++ DFI+KMP++P +
Sbjct: 731 CSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVL 790
Query: 612 VFGAMLGAC-KIH-KNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTI 669
++ +LGAC + + + ELG+KAA LF+L+P+ +VLL N+YAA W+ L K R
Sbjct: 791 IWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKK 850
Query: 670 MEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTN-S 728
M+ ++K G S V +K+ VH F +G HP + IY L+ L +++ AGYVP T +
Sbjct: 851 MKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFA 910
Query: 729 IHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIR--KNLRVCGDCHNATKYISLVT 786
++D+E +E +LS HSEKLA+AF +L + ST+ IR KNLRVCGDCH+A KYIS +
Sbjct: 911 LYDLEQENKEEILSYHSEKLAVAF-VLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIE 969
Query: 787 GREIIVRDMHRFHCFKNGVCSCGDYW 812
GR+II+RD +RFH F++G CSC D+W
Sbjct: 970 GRQIILRDSNRFHHFQDGACSCSDFW 995
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| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
Identities = 271/782 (34%), Positives = 452/782 (57%)
Query: 39 YRHPSALLLEVCTSLKELRR---ILPLIIKSGLCDQHLFQ-TKLVSLFCKYNSLSDAARV 94
Y PS +++ C L + + I+ G + LF LV ++ + L+ A +V
Sbjct: 107 YTFPS--VIKACAGLFDAEMGDLVYEQILDMGF-ESDLFVGNALVDMYSRMGLLTRARQV 163
Query: 95 FEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEI 154
F+ +P + +++++ GY+ ++A+ ++ + P + + +L G++ +
Sbjct: 164 FDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVV 223
Query: 155 RRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGF 214
++G+ +HG + +G + + G+V MY K + +A ++FD M RD VS+NT++ G+
Sbjct: 224 KQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGY 283
Query: 215 AQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIV 274
+ E ++ + ++ + D +T+ S+L A ++ L + K ++ Y ++AGF
Sbjct: 284 LKLEMVEESVRMFLENLDQFKP-DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLES 342
Query: 275 NVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQ 334
V L+D+YAKCG + TAR VF+ M+ ++ VSWNS+I+ Y++ G+ EAM++F+ M+
Sbjct: 343 TVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIM 402
Query: 335 GVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGT--DVSMTNSLISMYSKCKKVD 392
+ ++T + + L DL+ G +H + +K G D+S++N+LI MY+KC +V
Sbjct: 403 EEQADHITYLMLISVSTRLADLKFGKGLHS--NGIKSGICIDLSVSNALIDMYAKCGEVG 460
Query: 393 RAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALA 452
+ IFS + V+WN +I + G L +MR + PD T + +P A
Sbjct: 461 DSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCA 520
Query: 453 ELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNV 512
L+ R K IH ++R +E + + ALI+MY+KCG + + +F+ M+ R V TW
Sbjct: 521 SLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTG 580
Query: 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDY 572
MI YG +G G+ A+E F M + P+ + F+ I ACSHSGLV+EG+ F +K Y
Sbjct: 581 MIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHY 640
Query: 573 GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKA 632
I+P+++HY +VDLL R+ ++++A +FIQ MPI+P +++ ++L AC+ ++E E+
Sbjct: 641 KIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERV 700
Query: 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHS 692
+ R+ EL+PD+ GY +L +N YAA WDK++ +R ++ K + K PG S +E+ VH
Sbjct: 701 SRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHV 760
Query: 693 FYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHD--VEDYVQENLLSSHSEKLAI 750
F SG PQS+ IY LE L + GY+PD + E+ + L+ HSE+LAI
Sbjct: 761 FSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAI 820
Query: 751 AFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGD 810
AFGLLN+ PG+ + + KNLRVCGDCH TK IS + GREI+VRD +RFH FK+G CSC D
Sbjct: 821 AFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKD 880
Query: 811 YW 812
W
Sbjct: 881 RW 882
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3E6Q1 | PPR32_ARATH | No assigned EC number | 0.7059 | 0.9716 | 0.9752 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00001706001 | SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (760 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 812 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-172 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-59 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-58 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-40 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 694 bits (1793), Expect = 0.0
Identities = 300/733 (40%), Positives = 461/733 (62%), Gaps = 2/733 (0%)
Query: 78 LVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPV 137
++S+F ++ L A VF +P++ ++ ++ GYAK D+A+ RM + V P
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 138 VYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFD 197
VY + +L+ CG + ++ RG+E+H ++ GF LD+ + ++ MY KCG + A +FD
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 198 RMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRI 257
RMP RD +SWN +++G+ +NG L+L M E D +TI S++ A +G R+
Sbjct: 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 258 GKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVE 317
G+ +HGY ++ GF V+V +L+ MY G A VF M++++ VSW +MI+ Y +
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366
Query: 318 GGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSM 377
G P++A+ + M V P +TI L ACA LGDL+ G+ +H+L ++ L + V +
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426
Query: 378 TNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNI 437
N+LI MYSKCK +D+A ++F + K ++SW ++I G N R EAL +F +M +
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485
Query: 438 KPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARA 497
KP+S T+++ + A A + + K IHA V+R+ + F+ AL+D+Y +CG + A
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545
Query: 498 LFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGL 557
F+ +E+ V +WN+++ GY HG G AVELFN+M+E P+++TF+ + ACS SG+
Sbjct: 546 QFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
Query: 558 VEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAML 617
V +G+ YF S+++ Y I P + HY +VDLLGRAG+L EA++FI KMPI P V+GA+L
Sbjct: 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664
Query: 618 GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQK 677
AC+IH++VELGE AA +FELDP+ GY++LL N+YA A WD++A+VR M + GL
Sbjct: 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 678 TPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQ 737
PGCS VE+K +VH+F + HPQ K I T LE +++KA+G +S D + +
Sbjct: 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSK 784
Query: 738 ENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHR 797
+++ HSE+LAIAFGL+N+ PG I + KNL +C +CHN K+IS + REI VRD +
Sbjct: 785 DDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQ 844
Query: 798 FHCFKNGVCSCGD 810
FH FK+G CSCGD
Sbjct: 845 FHHFKDGECSCGD 857
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 512 bits (1321), Expect = e-172
Identities = 226/573 (39%), Positives = 352/573 (61%), Gaps = 1/573 (0%)
Query: 241 TIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGM 300
T +++ A + S+R KAV+ + +GF+ + ++ M+ KCG + AR +FD M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 301 KSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGI 360
RN+ SW ++I V+ GN EA +F++M + G + T + L A A LG G
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 361 FVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNG 420
+H + + + D ++ +LI MYSKC ++ A +F + KT V+WN+M+ GYA +G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 421 RVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMT 480
EAL + +MR + D FT +I + L+++ +AK HA +IR+ F ++ T
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 481 ALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP 540
AL+D+Y+K G + AR +FD M +++ +WN +I GYG HG G AVE+F +M+ P
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 541 NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDF 600
N +TFL +SAC +SGL E+G F S+ +++ I+P HY M++LLGR G L+EA+
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
Query: 601 IQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMW 660
I++ P +P + ++ A+L AC+IHKN+ELG AA +L+ + P++ +V+L N+Y ++
Sbjct: 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544
Query: 661 DKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAA 720
+ AKV +++KGL P C+ +E+K + HSF+SG HPQS+ IY L+ L+ EI
Sbjct: 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604
Query: 721 GYVPDTNS-IHDVEDYVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNAT 779
GYV + N + DV++ ++ HSEKLAIAFGL+N+S + + I ++ R+C DCH
Sbjct: 605 GYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVI 664
Query: 780 KYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812
K+I+LVT REI+VRD RFH FK G CSCGDYW
Sbjct: 665 KFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (548), Expect = 8e-59
Identities = 119/420 (28%), Positives = 200/420 (47%), Gaps = 1/420 (0%)
Query: 208 NTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMR 267
N+ + +G E AL L+ M E D V++ ++ G V A+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 268 AGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRI 327
+ V + A++ M+ + G + A VF M R++ SWN ++ Y + G +EA+ +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 328 FQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSK 387
+ +ML GV P T L C + DL RG VH + + DV + N+LI+MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 388 CKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSV 447
C V A +F ++ + +SWNAMI GY +NG E L F MR ++ PD T+ SV
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 448 IPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHV 507
I A L R + +H V+++ F +V V +LI MY G+ G A +F M +
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTS 567
+W MI GY +GL A+E + M + P++IT +SAC+ G ++ G+
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK-LHE 413
Query: 568 LKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVE 627
L + G+ + A++++ + +++A + +P + I+ + G ++ E
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 3e-58
Identities = 103/321 (32%), Positives = 173/321 (53%), Gaps = 5/321 (1%)
Query: 46 LLEVCTSLKELR---RILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKL 102
L+E C +LK +R + + SG +++ + K L DA R+F+ +P++
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN 188
Query: 103 DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHG 162
A + T++ G + +A + M D + +L+ +G R G+++H
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248
Query: 163 QLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAEL 222
++ G D F +++MY+KCG IE+A +FD MPE+ V+WN+++AG+A +G++E
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308
Query: 223 ALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVD 282
AL L M + G D T ++ + + L K H +R GF + +TALVD
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 283 MYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT 342
+Y+K GR+E AR VFD M +N++SWN++IA Y G +A+ +F++M+ +GV P +VT
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
Query: 343 IMEALHACADLGDLERG--IF 361
+ L AC G E+G IF
Sbjct: 429 FLAVLSACRYSGLSEQGWEIF 449
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-40
Identities = 89/346 (25%), Positives = 172/346 (49%), Gaps = 3/346 (0%)
Query: 57 RRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKF 116
R + ++K+G L+ ++ S +A +VF + K + M+ GY K
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 117 ASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAM 176
D A+ M D+V+P +L C +G++ G ++H G +
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 177 TGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRR 236
++ MY+KC I++A ++F +PE+D++SW +I+AG N AL +M +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LK 486
Query: 237 GDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLV 296
+ +T+++ L A A +G+L GK +H + +R G + AL+D+Y +CGR+ A
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 297 FDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDL 356
F+ + ++VVSWN ++ YV G A+ +F +M++ GV P VT + L AC+ G +
Sbjct: 547 FNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 357 ERGI-FVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKL 401
+G+ + H + ++ + ++ ++ + + K+ A + +K+
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
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Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-24
Identities = 56/131 (42%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 679 PGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSI-HDVED--- 734
PGC E SG HP SK E L IK G VP+T I HDV+
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 735 ---YVQENLLSSHSEKLAIAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREII 791
++ LL+SH+EK A+A+GLL + I+ R+CGDCH +YI+ TGREII
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTTRI-----IKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 792 VRDMHRFHCFK 802
VRD RFH FK
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 2e-17
Identities = 83/320 (25%), Positives = 139/320 (43%), Gaps = 59/320 (18%)
Query: 322 EEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSL 381
+EA R F K++ PT T + CA D++ + V +L+ + L D + +L
Sbjct: 423 KEAFR-FAKLIR---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 382 ISMYSKCKKVDRAADIFSKLQGK----TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNI 437
IS +K KVD ++F ++ + ++ A+I G A+ G+V +A + MRSKN+
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 438 KPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARA 497
KPD V ALI + GAV RA
Sbjct: 539 KPDRV-----------------------------------VFNALISACGQSGAV--DRA 561
Query: 498 LFDMMNERHVTTWNVMIDGYGTHGLGKA---------AVELFNKMLEGPTKPNDITFLCA 548
FD++ E T + D L KA A E++ + E K + A
Sbjct: 562 -FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 549 ISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP--- 605
+++CS G + + + +KK G++P + A+VD+ G AG L++A++ +Q
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 606 IEPGITVFGAMLGACKIHKN 625
I+ G + +++GAC KN
Sbjct: 680 IKLGTVSYSSLMGACSNAKN 699
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 6e-17
Identities = 68/327 (20%), Positives = 150/327 (45%), Gaps = 19/327 (5%)
Query: 141 YTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP 200
YT L+ C G++ E+ +++ G ++ +++ A+ GQ+ +A+ + M
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 201 ER----DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGR--RGDFITIVSILPAVANVGS 254
+ D V +N +++ Q+G + A D++ M E D IT+ +++ A AN G
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 255 LRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAA 314
+ K V+ V T V+ ++ G + A ++D MK + V +A
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 315 YVE----GGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLK 370
V+ G+ ++A I Q QG++ V+ + AC++ + ++ + +++ + +K
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 371 LGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTL------VSWNAMILGYAQNGRVNE 424
L VS N+LI+ + ++ +A ++ S++ K L ++++ +++ + +
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEM--KRLGLCPNTITYSILLVASERKDDADV 772
Query: 425 ALNYFCKMRSKNIKPDSFTMVSVIPAL 451
L+ + + IKP+ M I L
Sbjct: 773 GLDLLSQAKEDGIKPN-LVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 7/223 (3%)
Query: 404 KTLVSWNAMILGYAQNGRVNEALNYFCKMRSK-NIKPDSFTMVSVIPALAELSVIRYAKW 462
K+ VS + I GR EAL F + + + T +++ A L IR K
Sbjct: 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKA 144
Query: 463 IHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGL 522
++ V S FE + ++M ++ M+ KCG + AR LFD M ER++ +W +I G G
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204
Query: 523 GKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY- 581
+ A LF +M E + TF+ + A + G G + K G+ V D +
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGV--VGDTFV 261
Query: 582 -GAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH 623
A++D+ + G + +A MP E + +ML +H
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALH 303
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 404 KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALA 452
+V++N +I GY + G+V EAL F +M+ + IKP+ +T +I L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 8e-10
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 304 NVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT--IMEALHACAD 352
+VV++N++I Y + G EEA+++F +M +G++P T I+ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL--IDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-09
Identities = 70/378 (18%), Positives = 145/378 (38%), Gaps = 86/378 (22%)
Query: 268 AGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRI 327
AG + + T L+ AK G+V D M +
Sbjct: 466 AGLKADCKLYTTLISTCAKSGKV-------DAM------------------------FEV 494
Query: 328 FQKMLDQGVEPTNVTIMEAL-HACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYS 386
F +M++ GVE NV AL CA G + + + ++ + D + N+LIS
Sbjct: 495 FHEMVNAGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 387 KCKKVDRAADIFSKLQGKTL------VSWNAMILGYAQNGRVNEALNYFCKMRSKNIK-- 438
+ VDRA D+ ++++ +T ++ A++ A G+V+ A + + NIK
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 439 PDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARAL 498
P+ +T + + SC ++ G A ++
Sbjct: 614 PEVYT----------------------IAVNSC---------------SQKGDWDFALSI 636
Query: 499 FDMMNERHVTT----WNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH 554
+D M ++ V ++ ++D G G A E+ + K +++ + ACS+
Sbjct: 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696
Query: 555 SGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP---IEPGIT 611
+ ++ + + +K + P + A++ L +L +A + + +M + P
Sbjct: 697 AKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755
Query: 612 VFGAMLGACKIHKNVELG 629
+ +L A + + ++G
Sbjct: 756 TYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 63/279 (22%), Positives = 112/279 (40%), Gaps = 51/279 (18%)
Query: 44 ALLLEVCTSLKEL---RRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPD 100
++++ + + L L ++ +I++G + T LV L+ K+ + DA VF+ +P
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 101 KLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEI 160
K ++ ++ GY AV RM + VAP + +L C G +G EI
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 161 HGQLIVNGFSLDLFAM--TGVVNMYAKCGQIEEAYKMFDRMPERDLVS-WNTIVAGFAQN 217
Q + + AM ++ + + G ++EAY M R P + V+ W
Sbjct: 449 F-QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA--------- 498
Query: 218 GFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK--AVHGYAMRAGFDSIVN 275
AL R+H+ +L +G+ A Y M G + + N
Sbjct: 499 -----ALLTACRIHK---------------------NLELGRLAAEKLYGM--GPEKLNN 530
Query: 276 VSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAA 314
L+++Y GR A V + +K + + SM A
Sbjct: 531 Y-VVLLNLYNSSGRQAEAAKVVETLKRKGL----SMHPA 564
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 507 VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH 554
V T+N +IDGY G + A++LFN+M + KPN T+ I
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 306 VSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT 339
V++N++I + G EEA+ +F++M ++G+EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDS 441
V++N +I G + GRV EAL F +M+ + I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 306 VSWNSMIAAYVEGGNPEEAMRIFQKMLDQGV 336
V++NS+I+ Y + G EEA+ +F++M ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 80/396 (20%), Positives = 161/396 (40%), Gaps = 68/396 (17%)
Query: 85 YNSLSDAARVFEPIP-----DKLDALYHTMLKGY-AKF-------ASLDDAVSFLIRMRY 131
YN L R+ + I +K L M K Y AKF ++ +A F +R
Sbjct: 377 YNRLLRDGRIKDCIDLLEDMEKRGLL--DMDKIYHAKFFKACKKQRAVKEAFRFAKLIR- 433
Query: 132 DDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEE 191
P + + L+ VC +I + + G D T +++ AK G+++
Sbjct: 434 ---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 192 AYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN 251
+++F M + AG N +H T +++ A
Sbjct: 491 MFEVFHEM----------VNAGVEAN------------VH---------TFGALIDGCAR 519
Query: 252 VGSLRIGKAVHGYA-MRAGF---DSIVNVSTALVDMYAKCGRVETARLVFDGMKSR---- 303
G + KA Y MR+ D +V AL+ + G V+ A V MK+
Sbjct: 520 AGQV--AKAFGAYGIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 304 --NVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIF 361
+ ++ +++ A G + A ++Q + + ++ T A+++C+ GD + +
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 362 VHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIF--SKLQGKTL--VSWNAMILGYA 417
++ + + + D ++L+ + +D+A +I ++ QG L VS+++++ +
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 418 QNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAE 453
+AL + ++S ++P TM ++I AL E
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNI 437
V++N++I GY + G++ EAL F +M+ K +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 474 KNVFVMTALIDMYAKCGAVGTARALFDMMNERHVT----TWNVMIDGY 517
+V LID Y K G V A LF+ M +R + T++++IDG
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 8/34 (23%), Positives = 23/34 (67%)
Query: 305 VVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEP 338
+ ++N+++ A + G+P+ A+ + ++M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 509 TWNVMIDGYGTHGLGKAAVELFNKMLE 535
T+N +I GY G + A+ELF +M E
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 55/228 (24%)
Query: 549 ISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE---AWDFIQKMP 605
IS C+ SG V+ F + + G+E + +GA++D RAG++ + A+ ++
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 606 IEPGITVFGAMLGACKIHKNVELGEKAA-NRLFE-----------LDPDEGGYHVLLANI 653
++P VF A++ AC G+ A +R F+ +DPD L+
Sbjct: 538 VKPDRVVFNALISAC--------GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 654 YAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETL 713
A A D+ +V ++ + ++ TP + V+S Q + F ++
Sbjct: 590 -ANAGQVDRAKEVYQMIHEYNIKGTPEVYTI----AVNS-------CSQKGD-WDFALSI 636
Query: 714 IDEIKAAGYVPDTNSIHDVEDYVQENLLSS------HSEKLAIAFGLL 755
D++K G PD E S+ H+ L AF +L
Sbjct: 637 YDDMKKKGVKPD------------EVFFSALVDVAGHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 172 DLFAMTGVVNMYAKCGQIEEAYKMFDRMPER----DLVSWNTIVAGFAQ 216
D+ +++ Y K G++EEA K+F+ M +R ++ +++ ++ G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 406 LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKP 439
L ++NA++L A+ G + AL +M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 278 TALVDMYAKCGRVETARLVFDGMKSR----NVVSWNSMIAAY 315
L+D Y K G+VE A +F+ MK R NV +++ +I
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 203 DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFIT 241
D+V++NT++ G+ + G E AL L M + G + + T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 812 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.27 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.25 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.91 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.74 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.72 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.68 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.68 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.66 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.4 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.91 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.79 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.73 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.65 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.6 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.43 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.42 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.4 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.29 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.19 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.16 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.14 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.06 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.94 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.82 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.81 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.75 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.71 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.67 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.59 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.54 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.52 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.52 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.5 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.25 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.84 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.82 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.32 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.29 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.26 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.04 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.8 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.15 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.58 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.58 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.37 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.36 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.28 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.98 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.85 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.37 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.98 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.35 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.33 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.05 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.95 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.34 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.89 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.46 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 89.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.93 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.81 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.58 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.53 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.44 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.39 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.98 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.78 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.77 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.73 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.68 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.54 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.45 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.45 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 87.35 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.22 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.1 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.07 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 86.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.88 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.61 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.35 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.32 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.23 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.79 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.79 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.24 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.97 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.58 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.48 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 82.95 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.88 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.86 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.85 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.5 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.34 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 81.27 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.15 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.01 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 80.96 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-148 Score=1317.98 Aligned_cols=769 Identities=40% Similarity=0.756 Sum_probs=754.2
Q ss_pred CCcchHHHHHHhhc---ChHHHHHHHHHHHHhCCCCCchHHH-HHHHHhhcCCChhHHHHhhccCCCCChhHHHHHHHHH
Q 003531 38 IYRHPSALLLEVCT---SLKELRRILPLIIKSGLCDQHLFQT-KLVSLFCKYNSLSDAARVFEPIPDKLDALYHTMLKGY 113 (812)
Q Consensus 38 ~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 113 (812)
|+..++..+++.|. .+..|.++|+.+++.|+. .+..+. .|+++|+++|++++|+++|++|++||+++||+||++|
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~ 162 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHH
Confidence 56667778888886 678899999999999987 566666 9999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 003531 114 AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAY 193 (812)
Q Consensus 114 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 193 (812)
++.|++++|+++|++|...|+.||.+||+.+|++|+..+++..+.++|..+.+.|+.||..++|+||++|+++|++++|.
T Consensus 163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 003531 194 KMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI 273 (812)
Q Consensus 194 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 273 (812)
++|++|++||.++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 003531 274 VNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL 353 (812)
Q Consensus 274 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 353 (812)
..+||+||++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHh
Q 003531 354 GDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMR 433 (812)
Q Consensus 354 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (812)
|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHH
Q 003531 434 SKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVM 513 (812)
Q Consensus 434 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~l 513 (812)
. +++||.+||+++|.+|++.|.++.+.++|..+.+.|+.++..++|+||++|+|+|++++|.++|+.+ .+|+++||+|
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~l 560 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNIL 560 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHH
Confidence 6 5999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
|.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|+|+|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 594 LNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 594 ~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
++||.+++++|+++||..+|++|+++|+.+|+.+.|+.+++++++++|+++++|+.|+++|+..|+|++|.++++.|+++
T Consensus 641 ~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCC-ccccchhhhhhhchhccHHHHHHH
Q 003531 674 GLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNS-IHDVEDYVQENLLSSHSEKLAIAF 752 (812)
Q Consensus 674 g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~-~~~~~~~~~~~~~~~hse~la~~~ 752 (812)
|++|+||+||||+++++|.|++||.+||+.++||++|++|..+|++.||+||+.. + +++|++|+..|++||||||+||
T Consensus 721 g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~ 799 (857)
T PLN03077 721 GLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAF 799 (857)
T ss_pred CCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 6 5588899999999999999999
Q ss_pred ccccCCCCCcEEEEecccccCCchhhhhhhhcccCceEEEecCCcccccccccccCCC
Q 003531 753 GLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGD 810 (812)
Q Consensus 753 ~~~~~~~~~~~~~~~nl~~c~~~h~~~k~~s~~~~r~~~~~d~~~~h~~~~g~csc~~ 810 (812)
|||+||+|+||||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus 800 ~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 800 GLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-125 Score=1093.95 Aligned_cols=612 Identities=38% Similarity=0.654 Sum_probs=605.1
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003531 201 ERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEG-RRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA 279 (812)
Q Consensus 201 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 279 (812)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3677899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHH
Q 003531 280 LVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERG 359 (812)
Q Consensus 280 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 359 (812)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCC
Q 003531 360 IFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKP 439 (812)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 439 (812)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 003531 440 DSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGT 519 (812)
Q Consensus 440 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 519 (812)
|..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWD 599 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 599 (812)
+|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCC
Q 003531 600 FIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTP 679 (812)
Q Consensus 600 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 679 (812)
++++|++.||..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCC-ccccchhhhhhhchhccHHHHHHHccccCC
Q 003531 680 GCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNS-IHDVEDYVQENLLSSHSEKLAIAFGLLNSS 758 (812)
Q Consensus 680 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~-~~~~~~~~~~~~~~~hse~la~~~~~~~~~ 758 (812)
|+|||++++++|.|++||.+||+.++||++|.+|..+|++.||+||+.+ +||+++++|+..|++||||||+|||||+||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCcEEEEecccccCCchhhhhhhhcccCceEEEecCCcccccccccccCCCCC
Q 003531 759 PGSTIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHCFKNGVCSCGDYW 812 (812)
Q Consensus 759 ~~~~~~~~~nl~~c~~~h~~~k~~s~~~~r~~~~~d~~~~h~~~~g~csc~~~w 812 (812)
+|.||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-85 Score=778.08 Aligned_cols=688 Identities=28% Similarity=0.416 Sum_probs=612.4
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 003531 100 DKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGV 179 (812)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L 179 (812)
.+...++|.++++|++.|++++|+.+|+.|...|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHH
Q 003531 180 VNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK 259 (812)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 259 (812)
|++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003531 260 AVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT 339 (812)
Q Consensus 260 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 339 (812)
++|..+++.|+.||..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHc
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQN 419 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 419 (812)
..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003531 420 GRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALF 499 (812)
Q Consensus 420 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 499 (812)
|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh
Q 003531 500 DMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD 579 (812)
Q Consensus 500 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 579 (812)
++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.++.+|++.|.++.|.+++..+.+. |+.++..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce
Confidence 999999999999999999999999999999999986 59999999999999999999999999999999976 9999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCccchhhHhhhhhhc
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFE--LDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~ 657 (812)
++++|+++|+++|++++|.++|+++ .||.++|++|+.+|.++|+.++|.++|++|.+ ..| |..+|..+...|.+.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhc
Confidence 9999999999999999999999999 89999999999999999999999999999987 567 467889999999999
Q ss_pred CCchHHHHHHHHHH-HcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCCc-cccchh
Q 003531 658 SMWDKLAKVRTIME-KKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNSI-HDVEDY 735 (812)
Q Consensus 658 g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~~-~~~~~~ 735 (812)
|++++|.++|+.|. +.|+.++...-. ..+.....-+. +++..+.+++++..||...+ .-+..|
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~--------~lv~~l~r~G~-------~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYA--------CVVDLLGRAGK-------LTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHH--------HHHHHHHhCCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999 567754321100 00000011112 33444455566789997652 222233
Q ss_pred hhhhhchhccHHHH-HHHccccCCCCCcEEEEecccccCCchhhhhhhhcccCceEE-------EecCCccccccccccc
Q 003531 736 VQENLLSSHSEKLA-IAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISLVTGREII-------VRDMHRFHCFKNGVCS 807 (812)
Q Consensus 736 ~~~~~~~~hse~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~k~~s~~~~r~~~-------~~d~~~~h~~~~g~cs 807 (812)
...+-+- --|+.| ..+.+.+...+.-+-+..-....|+..++.+....|..+.+- +--.+..|-|..|.-|
T Consensus 668 ~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 668 RIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 2111110 012222 234555555554433333345688999999998888776321 1113577888777554
Q ss_pred C
Q 003531 808 C 808 (812)
Q Consensus 808 c 808 (812)
-
T Consensus 747 h 747 (857)
T PLN03077 747 H 747 (857)
T ss_pred C
Confidence 3
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-71 Score=638.10 Aligned_cols=474 Identities=27% Similarity=0.439 Sum_probs=458.8
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCC-CCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHH
Q 003531 100 DKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDD-VAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTG 178 (812)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 178 (812)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHH
Q 003531 179 VVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIG 258 (812)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 258 (812)
|+++|+++|++++|+++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 003531 259 KAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEP 338 (812)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 338 (812)
+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 003531 339 TNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQ 418 (812)
Q Consensus 339 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 418 (812)
|..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003531 419 NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIR-SCFEKNVFVMTALIDMYAKCGAVGTARA 497 (812)
Q Consensus 419 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~~A~~ 497 (812)
.|+.++|+++|++|.+.|+.||.+||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHhcC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC
Q 003531 498 LFDMMN-ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575 (812)
Q Consensus 498 ~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 575 (812)
+|++|. +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 999998 78999999999999999999999999999976 5665 568999999999999999999999999876 775
Q ss_pred C
Q 003531 576 P 576 (812)
Q Consensus 576 p 576 (812)
+
T Consensus 561 k 561 (697)
T PLN03081 561 M 561 (697)
T ss_pred c
Confidence 4
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-70 Score=630.64 Aligned_cols=521 Identities=15% Similarity=0.241 Sum_probs=476.0
Q ss_pred chHHH-HHHHHhhcCCChhHHHHhhccCCCCChh-----HHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 003531 72 HLFQT-KLVSLFCKYNSLSDAARVFEPIPDKLDA-----LYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLL 145 (812)
Q Consensus 72 ~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 145 (812)
+.... .++..|+++|++++|+++|+.|+.++.. .++.++.+|.+.|..++|+.+|+.|.. ||..||+.+|
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 33444 8889999999999999999999876544 456677889999999999999999974 9999999999
Q ss_pred HHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCChH
Q 003531 146 KVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP----ERDLVSWNTIVAGFAQNGFAE 221 (812)
Q Consensus 146 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~ 221 (812)
.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999999999999999999999999999999999999998 489999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCChHHHHHHHhc
Q 003531 222 LALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMR--AGFDSIVNVSTALVDMYAKCGRVETARLVFDG 299 (812)
Q Consensus 222 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 299 (812)
+|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 67899999999999999999999999999999
Q ss_pred CCC----CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCCh
Q 003531 300 MKS----RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDV 375 (812)
Q Consensus 300 m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 375 (812)
|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 986 6779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcC----CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHH
Q 003531 376 SMTNSLISMYSKCKKVDRAADIFSKLQ----GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPAL 451 (812)
Q Consensus 376 ~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 451 (812)
.+|++||.+|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999995 5789999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHH
Q 003531 452 AELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYA----KCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAV 527 (812)
Q Consensus 452 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 527 (812)
++.|+++.|.++|..|.+.|+.||..+|++|+.++. +++...++...|+.+...+...| .++|+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~~Al 832 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------TSWAL 832 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------HHHHH
Confidence 999999999999999999999999999999998743 44444444444443333333344 45699
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 003531 528 ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--- 604 (812)
Q Consensus 528 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--- 604 (812)
.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++|++++++. .++|..++++|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 99999999999999999999998777888888888888777644 6777889999999988532 47899999999
Q ss_pred CCCCCHH
Q 003531 605 PIEPGIT 611 (812)
Q Consensus 605 ~~~pd~~ 611 (812)
++.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 6777764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=592.91 Aligned_cols=502 Identities=17% Similarity=0.238 Sum_probs=419.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcch-----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHh
Q 003531 170 SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVS-----WNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVS 244 (812)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 244 (812)
.++...|..++..++++|++++|.++|++|++++.+. ++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4556666666666777777777777777776655443 33445556777777777777776653 67777777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC----CCCchhHHHHHHHHHhCCC
Q 003531 245 ILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMK----SRNVVSWNSMIAAYVEGGN 320 (812)
Q Consensus 245 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 320 (812)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 777777777777777777777777777777777888888888888888888888887 3788888888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhh--cCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 003531 321 PEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQ--LKLGTDVSMTNSLISMYSKCKKVDRAADIF 398 (812)
Q Consensus 321 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (812)
+++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888889989999999999999999999999988876 578889999999999999999999999999
Q ss_pred HhcCCC----CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 003531 399 SKLQGK----TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK 474 (812)
Q Consensus 399 ~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 474 (812)
+.|.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 998765 4588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN----ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAIS 550 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 550 (812)
+..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999985 68999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----hcC-------------------CHHHHHHHHHhC---
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG----RAG-------------------RLNEAWDFIQKM--- 604 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~eA~~~~~~~--- 604 (812)
+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999876 99999999999987633 222 346899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCccchhhHhhhhhhcCCc-hHHHHHHHHHHHcCCccCC
Q 003531 605 PIEPGITVFGAMLGACKIHKNVELGEKAANRLFE-LDPDEGGYHVLLANIYAAASMW-DKLAKVRTIMEKKGLQKTP 679 (812)
Q Consensus 605 ~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~~~~ 679 (812)
++.||..+|+++++.+.+.+..+.+..+++.+.. -.+.+..+|..|.+.+ |++ ++|..+++.|.+.|+.++.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 7899999999999777788888888888877642 2344567888888876 444 5899999999999997554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=348.22 Aligned_cols=611 Identities=13% Similarity=0.089 Sum_probs=274.3
Q ss_pred hhcChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhccCCC--C-ChhHHHHHHHHHHhcCCchHHHHH
Q 003531 49 VCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPD--K-LDALYHTMLKGYAKFASLDDAVSF 125 (812)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 125 (812)
..++.+.|...+..+.+.... ...........+...|++++|...|+...+ + +...+..+...+...|++++|...
T Consensus 239 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 239 EAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 344566666666666554433 111111222333445556666555554321 1 112222333444455555555555
Q ss_pred HHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---C
Q 003531 126 LIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---R 202 (812)
Q Consensus 126 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~ 202 (812)
|.++.... +.+...+..+...+...|+++.|.+.+..+.+.. +.+...++.+...|.+.|++++|.+.|+++.+ .
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 395 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE 395 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 55554432 2223334444444555555555555555554443 33444455555555555555555555554432 1
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003531 203 DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVD 282 (812)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 282 (812)
+...|..+...+...|++++|++.|+.+...... +......++..+.+.|+++.|..++..+.+.. +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 2234444444555555555555555554443211 11222333344444555555555554444321 233344444455
Q ss_pred HHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHH
Q 003531 283 MYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERG 359 (812)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 359 (812)
.|...|+.++|...|+++.+ .+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+.+++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555544332 223334444444445555555555555544432 12233444444444444555555
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 360 IFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG---KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+..
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55544444433 22333344444445555555555555444432 123344444444555555555555554444321
Q ss_pred CCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHH
Q 003531 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVM 513 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~l 513 (812)
+.+...+..+..++...|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...|..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 1122333444444444455555555444444332 22334444444444445555555544444431 233344444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
...|...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..++..|.+.|+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence 44444445555555555444442 233344444444444444444444444444432 11234444444444444444
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
+++|.+.|+++ ...| ++.+++.+++.+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444 1122 33444444444444444 444444444444444444444444444444444444444444444
Q ss_pred Hc
Q 003531 672 KK 673 (812)
Q Consensus 672 ~~ 673 (812)
+.
T Consensus 865 ~~ 866 (899)
T TIGR02917 865 NI 866 (899)
T ss_pred hh
Confidence 43
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=338.52 Aligned_cols=610 Identities=12% Similarity=0.034 Sum_probs=479.2
Q ss_pred HhhcChHHHHHHHHHHHHhCCCCCchHHH-HHHHHhhcCCChhHHHHhhccCCC---CChhHHHHHHHHHHhcCCchHHH
Q 003531 48 EVCTSLKELRRILPLIIKSGLCDQHLFQT-KLVSLFCKYNSLSDAARVFEPIPD---KLDALYHTMLKGYAKFASLDDAV 123 (812)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 123 (812)
..-++.+.|...+..+++..+. +.... .++..+...|++++|...|+.+.. .+...+......+...|++++|+
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPN--NPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 3345888888888888776544 44455 788888889999999988886532 22233333444556788999999
Q ss_pred HHHHHhHhCCCCCCc-chHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC-
Q 003531 124 SFLIRMRYDDVAPVV-YNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE- 201 (812)
Q Consensus 124 ~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~- 201 (812)
..|+++.+.+ |+. ..+..+...+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.+.+
T Consensus 282 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 358 (899)
T TIGR02917 282 ETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGL 358 (899)
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998887754 432 233444556678889999999999888775 45667778888888899999999998887764
Q ss_pred --CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003531 202 --RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA 279 (812)
Q Consensus 202 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 279 (812)
.+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|+.+.|...+..+.+.... .......
T Consensus 359 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 436 (899)
T TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLL 436 (899)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHH
Confidence 345678888888999999999999999887753 223445666777778889999999999888876532 3445566
Q ss_pred HHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 003531 280 LVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDL 356 (812)
Q Consensus 280 li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 356 (812)
++..|.+.|+.++|..+++.+.. .+..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 78888899999999999888764 456788888899999999999999999888753 23344566777788888999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHh
Q 003531 357 ERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMR 433 (812)
Q Consensus 357 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (812)
+.|.++++.+.+.. +.+..++..+...|.+.|+.++|...|+++... +...+..++..|.+.|++++|..+++++.
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999888765 346778888888999999999999999887543 44567788888999999999999999887
Q ss_pred hCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHH
Q 003531 434 SKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTW 510 (812)
Q Consensus 434 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~ 510 (812)
+.. +.+..++..+..++...|+.+.|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++. ..+..+|
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 643 4456678888888889999999999998887764 3456678888888999999999999998876 3457788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGR 590 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 590 (812)
..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+.. ..|+...+..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHH
Confidence 889999999999999999999988864 44566777888888899999999999988874 35666778888889999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHH
Q 003531 591 AGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 591 ~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
.|++++|.+.++++ ...| +..++..+...|...|+.++|...++++++..|+++..+..++.+|...|+ ++|..+++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 99999999888887 3334 667888888888889999999999999999999888889999999999999 88988888
Q ss_pred HHHHc
Q 003531 669 IMEKK 673 (812)
Q Consensus 669 ~m~~~ 673 (812)
++.+.
T Consensus 828 ~~~~~ 832 (899)
T TIGR02917 828 KALKL 832 (899)
T ss_pred HHHhh
Confidence 88765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=243.80 Aligned_cols=105 Identities=63% Similarity=1.046 Sum_probs=96.1
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCC-ccccchhhh--------hhhchhccHHHHH
Q 003531 680 GCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGYVPDTNS-IHDVEDYVQ--------ENLLSSHSEKLAI 750 (812)
Q Consensus 680 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~p~~~~-~~~~~~~~~--------~~~~~~hse~la~ 750 (812)
||||+++ |.|++||.+||+. ++..++...||.|++.. +|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999977 9999999999998 45566778899999988 888877765 5689999999999
Q ss_pred HHccccCCCCCcEEEEecc-cccCCchhhhhhhhcccCceEEEecCCcccccc
Q 003531 751 AFGLLNSSPGSTIHIRKNL-RVCGDCHNATKYISLVTGREIIVRDMHRFHCFK 802 (812)
Q Consensus 751 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~k~~s~~~~r~~~~~d~~~~h~~~ 802 (812)
||||+++ ||+||+ |||+|||+++|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-24 Score=261.93 Aligned_cols=602 Identities=11% Similarity=0.054 Sum_probs=450.6
Q ss_pred cChHHHHHHHHHHHHhCCCCCchHHH-HHHHHhhcCCChhHHHHhhccCCC--CC-hhHH----------------HHHH
Q 003531 51 TSLKELRRILPLIIKSGLCDQHLFQT-KLVSLFCKYNSLSDAARVFEPIPD--KL-DALY----------------HTML 110 (812)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~~-~~~~----------------~~li 110 (812)
.+.+.+++.+..++...+ ++.... .+...+.+.|+.++|.+.++...+ |+ ...+ ..+.
T Consensus 42 ~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred CChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 378899999998876554 455555 888888999999999999987643 22 2222 2334
Q ss_pred HHHHhcCCchHHHHHHHHhHhCCCCCCcc-hHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 003531 111 KGYAKFASLDDAVSFLIRMRYDDVAPVVY-NYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQI 189 (812)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 189 (812)
+.+...|++++|+..|+++.... +|+.. ............++.++|.+.++.+++.. +.+...+..+...+...|+.
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 46888999999999999998653 33332 11122222335689999999999999885 55777888999999999999
Q ss_pred hHHHHHhccCCCCCc------chHH-----------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHH
Q 003531 190 EEAYKMFDRMPERDL------VSWN-----------------TIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSIL 246 (812)
Q Consensus 190 ~~A~~~f~~~~~~~~------~~~~-----------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 246 (812)
++|+..|+++.+... ..|- ..+..+-.....+.|...+.++......|+... ...-
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 999999998754211 1111 111111122234455555555544332333221 1223
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC--CCc---hhHHHH----------
Q 003531 247 PAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS--RNV---VSWNSM---------- 311 (812)
Q Consensus 247 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l---------- 311 (812)
.++...|++++|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 45667899999999999999875 34677888999999999999999999998765 322 223222
Q ss_pred --HHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCC
Q 003531 312 --IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCK 389 (812)
Q Consensus 312 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 389 (812)
...+.+.|++++|...|++.++.. +.+...+..+-..+...|++++|.+.++.+.+... .+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hc
Confidence 345678999999999999999863 23445666777889999999999999999998753 34556667777775 46
Q ss_pred ChHHHHHHHHhcCCCC------------cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhcccc
Q 003531 390 KVDRAADIFSKLQGKT------------LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSV 456 (812)
Q Consensus 390 ~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 456 (812)
+.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999998776432 123555677888999999999999999884 455 4456677788999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChH---------HHHHHHHHHHhCCCH
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER----HVT---------TWNVMIDGYGTHGLG 523 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~~~~~g~~ 523 (812)
.++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988754 334555555666678899999999999988632 111 123456778899999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 003531 524 KAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQ 602 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~ 602 (812)
++|+++++. .+++...+..+...+.+.|++++|+..|+...+ ..| +...+..++.+|...|++++|.+.++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999872 344556777888899999999999999999985 356 68899999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc------chhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 603 KM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG------YHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 603 ~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+. ...| +..++..+..++...|++++|...++++++..|+++. .+..++.++...|++++|...++....
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88 4555 4567888888899999999999999999998776543 566779999999999999999888864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-24 Score=257.65 Aligned_cols=585 Identities=12% Similarity=0.051 Sum_probs=434.0
Q ss_pred HHHHHhhcCCChhHHHHhhccC---CCCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchH------------
Q 003531 77 KLVSLFCKYNSLSDAARVFEPI---PDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNY------------ 141 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~------------ 141 (812)
..+..+...++.+.|++.++++ ...|...+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 5566677888999999888864 33467788889999999999999999999998854 554333
Q ss_pred -----HHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHH
Q 003531 142 -----TYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGV-VNMYAKCGQIEEAYKMFDRMPE--R-DLVSWNTIVA 212 (812)
Q Consensus 142 -----~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L-i~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 212 (812)
..+.+.+...|++++|.+.++.+.+.. +++......+ .......|+.++|++.|+++.+ | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 223345778899999999999998764 3443221111 2222345999999999999875 3 4447888889
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC----------------Ccc---hHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 003531 213 GFAQNGFAELALDLVTRMHEEGRRG----------------DFI---TIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI 273 (812)
Q Consensus 213 ~~~~~g~~~~A~~l~~~m~~~g~~p----------------~~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 273 (812)
.+...|+.++|+..|+++....... +.. .+...+..+........+...+....+....|.
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999987542100 000 011111112222223444555544443333333
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCh-hhH------
Q 003531 274 VNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN-VTI------ 343 (812)
Q Consensus 274 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~------ 343 (812)
.. ...+...+...|++++|...|++..+ .+...+..+...|.+.|++++|+..|++..+....... ..+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 22345667789999999999998765 36778999999999999999999999999876432211 111
Q ss_pred ------HHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHH
Q 003531 344 ------MEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMIL 414 (812)
Q Consensus 344 ------~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~ 414 (812)
...-..+...|++++|...++.+++... .+...+..|...|.+.|++++|++.|++..+. +...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1123456788999999999999998853 45667778999999999999999999998754 3446666777
Q ss_pred HHHHcCChHHHHHHHHHHhhCCCCC--------CcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003531 415 GYAQNGRVNEALNYFCKMRSKNIKP--------DSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMY 486 (812)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 486 (812)
.|. .++.++|+.+++.+....... ....+..+...+...|+.++|.+.++.+++.. +.+..++..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 467899999987764321100 01234445566778999999999999998875 33567788899999
Q ss_pred HhcCCHHHHHHHHHhcC--C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh---------HHHHHHHHHHh
Q 003531 487 AKCGAVGTARALFDMMN--E-RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI---------TFLCAISACSH 554 (812)
Q Consensus 487 ~k~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~ 554 (812)
.+.|++++|...|+++. . .+...+..+...+...|+.++|+..++++......++.. .+..+...+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999875 2 355566666666788999999999999875433222221 23345677889
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003531 555 SGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 555 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
.|+.++|..+++. ..++...+..+.+.+.+.|++++|.+.+++. ...| +...+..++..+...|++++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998761 2336677888999999999999999999998 5566 577999999999999999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
++++++..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999988753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-21 Score=222.73 Aligned_cols=561 Identities=12% Similarity=0.034 Sum_probs=342.0
Q ss_pred hcCCChhHHHHhhccCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHH
Q 003531 83 CKYNSLSDAARVFEPIP---DKLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKE 159 (812)
Q Consensus 83 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 159 (812)
...|++++|+..|+... +.+..++..|.+.|.+.|+.++|+..+++..+. .|+...|..++..+ ++.+.|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 34588889988888653 235667888888999999999999998888875 45555555555333 78888888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHH--------HHhcCChhHHHHHhccCCCCC--cchHHHH-HHHHHhCCChHHHHHHHH
Q 003531 160 IHGQLIVNGFSLDLFAMTGVVNM--------YAKCGQIEEAYKMFDRMPERD--LVSWNTI-VAGFAQNGFAELALDLVT 228 (812)
Q Consensus 160 l~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~~~~l-i~~~~~~g~~~~A~~l~~ 228 (812)
+++++.+.. +.+..++..+... |.+.+...+++. .....++ ....... ...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999888875 4445555555555 777766666666 2222333 3333444 788888999999999999
Q ss_pred HHHHcCCCCCcchHHhHHHHHhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC-----
Q 003531 229 RMHEEGRRGDFITIVSILPAVAN-VGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS----- 302 (812)
Q Consensus 229 ~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----- 302 (812)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++.+++.
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 998875332 2224444455655 355 666665332 3346778888899999999999999998888764
Q ss_pred CCchhHH------------------------------HHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh----------
Q 003531 303 RNVVSWN------------------------------SMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT---------- 342 (812)
Q Consensus 303 ~~~~~~~------------------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---------- 342 (812)
|...+|- .++..+.+.+.++-+.++.. ..|....
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccc
Confidence 2222221 11344455555554443321 1222211
Q ss_pred ------------------------HHHHHHHHhccCChHHHHHHHHHHhhc-C-CCCChhHHHHHHHHHHhCCCh---HH
Q 003531 343 ------------------------IMEALHACADLGDLERGIFVHKLLDQL-K-LGTDVSMTNSLISMYSKCKKV---DR 393 (812)
Q Consensus 343 ------------------------~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~---~~ 393 (812)
...+--.....|+.++|.+++...... + -..+....+-|+..|.+.+.+ .+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 111111123445566666666665542 1 112334445666666666552 22
Q ss_pred HHHH-------------------------HHhcCC---C--CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc
Q 003531 394 AADI-------------------------FSKLQG---K--TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT 443 (812)
Q Consensus 394 A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 443 (812)
+..+ +..... . +...|..+...+.. ++.++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222 111111 1 33445555555555 6667777766666553 355443
Q ss_pred HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH---HHHHHHHhC
Q 003531 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWN---VMIDGYGTH 520 (812)
Q Consensus 444 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~ 520 (812)
...+..++...|+.++|...+..+... +|+...+..+...+.+.|+.++|.+.|+...+.++..++ .+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 333334445677777777777765443 233333455566667777777777777766633222222 222233344
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 003531 521 GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWD 599 (812)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~ 599 (812)
|++++|+..|++.++ ..|+...+..+..++.+.|++++|+..|++... +.| +...++.+...+...|++++|++
T Consensus 590 Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777776 456666677777777777777777777777663 355 56667777777777777777777
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 600 FIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 600 ~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+++. ...| ++..|..+..++...|++++|+..++++++++|++..+....+++.....+++.|.+-+++.-.-
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 77766 4455 45577777777777777777777777777777777777777777777777777776665555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-20 Score=216.08 Aligned_cols=548 Identities=10% Similarity=-0.022 Sum_probs=383.4
Q ss_pred HHHHHHHHH--HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003531 105 LYHTMLKGY--AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNM 182 (812)
Q Consensus 105 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 182 (812)
++--+..+. ...|++++|+..|++..+.. +-+...+..+...+...|+.++|....++.++.. +.|...+..| ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH
Confidence 344444443 33499999999999998854 2235568888899999999999999999999885 3445555554 22
Q ss_pred HHhcCChhHHHHHhccCCC--CC-cchHHHHHHH--------HHhCCChHHHHHHHHHHHHcCCCCCcchHHhH-HHHHh
Q 003531 183 YAKCGQIEEAYKMFDRMPE--RD-LVSWNTIVAG--------FAQNGFAELALDLVTRMHEEGRRGDFITIVSI-LPAVA 250 (812)
Q Consensus 183 y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~ 250 (812)
+ ++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+.
T Consensus 121 i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred h---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 2 899999999999874 43 3344444443 6666 44555444 4443344555555555 88999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHH
Q 003531 251 NVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAK-CGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQ 329 (812)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 329 (812)
..++++.+..++..+.+.+... ......|..+|.. .++ +++..+++...+.|...+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999997443 5556667778888 477 999999876556788999999999999999999999999
Q ss_pred HHHHcCCC-CChhhHHHH------------------------------HHHHhccCChHHHHHHHH--------------
Q 003531 330 KMLDQGVE-PTNVTIMEA------------------------------LHACADLGDLERGIFVHK-------------- 364 (812)
Q Consensus 330 ~m~~~g~~-p~~~t~~~l------------------------------l~a~~~~~~~~~a~~i~~-------------- 364 (812)
++...-.. |+..++.-+ +..+.+.++++.+.++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 98653222 333333222 233334444444443321
Q ss_pred ---------------HHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC--Cc----ccHHHHHHHHHHcCC--
Q 003531 365 ---------------LLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK--TL----VSWNAMILGYAQNGR-- 421 (812)
Q Consensus 365 ---------------~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~----~~~~~li~~~~~~g~-- 421 (812)
.+.+.. +-+....--+.-...+.|+.++|..+|+..-.. +. ..-+-++..|.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 000000 001112222222345677788888888776541 11 223356666666655
Q ss_pred -hHHHHHH----------------------HHHHhh-CCCCCC---cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 003531 422 -VNEALNY----------------------FCKMRS-KNIKPD---SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK 474 (812)
Q Consensus 422 -~~~A~~~----------------------~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 474 (812)
..++..+ +..... .+..|+ ...+..+..++. .+..++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHHHhC--C
Confidence 3333333 111111 112233 333444444444 478888888777766554 4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNE--RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 551 (812)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|.+.|++.++. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 443333445555689999999999998763 55566778888899999999999999999985 45443 33344445
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a 629 (812)
....|++++|...+++..+ +.|+...|..++.++.+.|+.++|...+++. ...| +...+..+..++...|+.++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5667999999999999884 5788889999999999999999999999998 6677 466888888899999999999
Q ss_pred HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=191.83 Aligned_cols=448 Identities=14% Similarity=0.119 Sum_probs=353.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003531 207 WNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAK 286 (812)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 286 (812)
...|..-..+.|++++|++.-...-.++ ..+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555667788888887654433322 1122222222233444445544443333333322 2235677888899999
Q ss_pred CCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH-HhccCChHHHHHH
Q 003531 287 CGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHA-CADLGDLERGIFV 362 (812)
Q Consensus 287 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i 362 (812)
.|++++|...++.+.+ ..+..|.-+..++...|+.+.|.+.|.+.++ +.|+.+...+-+.- ....|.+.+|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998876 3567899999999999999999999998887 46766654433332 3346888899888
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCC
Q 003531 363 HKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKP 439 (812)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 439 (812)
+...++... .-..+|+-|...+-..|++..|...|++...-|+ .+|-.|...|...+.+++|+..|.+... .+|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCC
Confidence 888877642 2356688888889999999999999999876554 5788888999999999999999988776 467
Q ss_pred C-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChHHHHHHHH
Q 003531 440 D-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--ER-HVTTWNVMID 515 (812)
Q Consensus 440 ~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~ 515 (812)
+ .+.+..+...|...|.++.|...+++.+... +.-...|+.|..++-..|++.+|.+.|.+.. .| ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 6 5667777777889999999999999988754 2235679999999999999999999999887 33 4678899999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGR 593 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 593 (812)
.|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..|++.. .|.|+ +..|+.|+..|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 7787 5689999999999999999999999887 58895 7899999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
.+.|.+.+.++ .+.|. ....+.|.+.|.-.|+..+|+..++.++++.||.+.+|-.|+-.+.-..+|.+-.+.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHH
Confidence 99999999888 77775 4588999999999999999999999999999999999999998888888888744333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-20 Score=187.91 Aligned_cols=418 Identities=14% Similarity=0.158 Sum_probs=334.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCCh
Q 003531 245 ILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNP 321 (812)
Q Consensus 245 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 321 (812)
+..-.-+.|++++|++--..+-+.. +.+....-.+-..|....+.+....--....+ .-..+|..+...+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3334455677877776544443322 22222223334556666666654443322222 2346789999999999999
Q ss_pred hHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhCCChHHHHHHHH
Q 003531 322 EEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVS-MTNSLISMYSKCKKVDRAADIFS 399 (812)
Q Consensus 322 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~ 399 (812)
++|+.+++.|++. +|+ ...|..+..++...|+.+.|.+.+...++.+ |+.. +.+-+....-..|++++|...+.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999985 554 4578889999999999999999999888764 4332 33345556667899999999988
Q ss_pred hcCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 003531 400 KLQGKT---LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKN 475 (812)
Q Consensus 400 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 475 (812)
+..+.+ .+.|+.|...+-.+|+..+|++.|++... +.|+ ...|..+-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 766543 37899999999999999999999999987 5676 4567777778888888888888777766543 234
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISA 551 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 551 (812)
..++..+.-.|...|.++-|...|++.. +|+ ...|+.|..++-..|+..+|...|.+.+. +.|+ ....+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 5566667777999999999999999987 454 57999999999999999999999999998 6777 5578899999
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVEL 628 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~ 628 (812)
+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|. ...++.++..|...|++..
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999877 46674 678999999999999999999999988 88897 4589999999999999999
Q ss_pred HHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 629 GEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 629 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
|.+.+.+++..+|.-..++..|+.+|-..|+..+|..-++...+...
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999998887543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-17 Score=189.11 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=194.6
Q ss_pred cCChHHHHHHHHHHhhCC-CCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003531 419 NGRVNEALNYFCKMRSKN-IKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTAR 496 (812)
Q Consensus 419 ~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 496 (812)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++.+++.. +.....|..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777888887777654 2333 3345555555667778888888877777653 223556777888888999999999
Q ss_pred HHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q 003531 497 ALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDY 572 (812)
Q Consensus 497 ~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 572 (812)
..|++.. ..+...|..+...|...|++++|+..|++.++ +.|+ ...+..+..++.+.|++++|+..|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9998776 34577899999999999999999999999998 5565 556777888889999999999999998853
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 573 GIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI-------T-VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 573 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
.| +...++.++.+|...|++++|.+.+++. .+.|+. . .++..+..+...|++++|+..++++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45 5788999999999999999999999886 444431 1 1222222334469999999999999999999
Q ss_pred CccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 643 EGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 643 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+...+..++.+|...|++++|.+.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9889999999999999999999999988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=187.48 Aligned_cols=291 Identities=13% Similarity=0.145 Sum_probs=212.7
Q ss_pred HHHhCCChHHHHHHHHhcCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC---cccHHhHHHHHhccccH
Q 003531 384 MYSKCKKVDRAADIFSKLQGKT---LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD---SFTMVSVIPALAELSVI 457 (812)
Q Consensus 384 ~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 457 (812)
.+...|++++|...|+++.+.+ ..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455566666666666665432 23556666666667777777777766665322111 13345556666666777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC------hHHHHHHHHHHHhCCCHHHHHHH
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--RH------VTTWNVMIDGYGTHGLGKAAVEL 529 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~~ 529 (812)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+.+.|++++|++.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776666542 34566778888888888888888888888763 21 12456677788889999999999
Q ss_pred HHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 530 FNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV--MDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 530 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
|+++.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999884 454 457777888899999999999999998854 343 466888999999999999999999988 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhh--cCCchHHHHHHHHHHHcCCccCCc
Q 003531 606 IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAA--ASMWDKLAKVRTIMEKKGLQKTPG 680 (812)
Q Consensus 606 ~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~ 680 (812)
..|+...+..++..+...|++++|...++++++..|++......+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 577777778888889999999999999999999999876444333333322 569999999999999999988886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-18 Score=183.06 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=209.2
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhCC
Q 003531 314 AYVEGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTD---VSMTNSLISMYSKCK 389 (812)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~~~g 389 (812)
.+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+.+.+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556666666666666654 232 23445555555555566666555555554322111 235667778888888
Q ss_pred ChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHH
Q 003531 390 KVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHAL 466 (812)
Q Consensus 390 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 466 (812)
++++|..+|+++.+. +..+++.++..+.+.|++++|++.|+.+.+.+..++...
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 888888888887653 446778888888888888888888888876432221100
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--
Q 003531 467 VIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-- 541 (812)
Q Consensus 467 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 541 (812)
....+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++.+. .|+
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 248 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL 248 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH
Confidence 011245667778889999999999998763 34567888899999999999999999999984 344
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 003531 542 DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGAC 620 (812)
Q Consensus 542 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~ 620 (812)
..++..+..++...|++++|...++++.+. .|+...+..++..+.+.|++++|.++++++ ...|+...++.++..+
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 456788899999999999999999998854 577677789999999999999999999877 6679999999888876
Q ss_pred Hh---cCCHHHHHHHHHHHhc
Q 003531 621 KI---HKNVELGEKAANRLFE 638 (812)
Q Consensus 621 ~~---~g~~~~a~~~~~~~~~ 638 (812)
.. +|+.+++...++++++
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhccCCccchhHHHHHHHHHH
Confidence 64 5688888888887775
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-15 Score=164.04 Aligned_cols=572 Identities=12% Similarity=0.083 Sum_probs=391.9
Q ss_pred hhHHHHhhccCCC---CChhHHHHHHHHH--HhcCCchHHHHHHHHhHhCC--CCCCcchHHHHHHHhcCcCChHHHHHH
Q 003531 88 LSDAARVFEPIPD---KLDALYHTMLKGY--AKFASLDDAVSFLIRMRYDD--VAPVVYNYTYLLKVCGDVGEIRRGKEI 160 (812)
Q Consensus 88 ~~~A~~~f~~~~~---~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~l 160 (812)
++.|...|..... +|+.. .+..++ ...+++..|+.+|....... .+||.. ..+-.++.+.++.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 5788888876532 23322 233443 34678899999999866532 334442 2223455678888888888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHH---Hhc---CChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 003531 161 HGQLIVNGFSLDLFAMTGVVNMY---AKC---GQIEEAYKMFDRMP---ERDLVSWNTIVAGFAQNGFAELALDLVTRMH 231 (812)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~Li~~y---~~~---g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 231 (812)
|.+.++.. | ...++++..+ ... ..+..+..++...- ..|++..|.|-.-|.-.|++..++.+...+.
T Consensus 222 ~~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 88888764 3 3333333322 122 22344444444432 2577888999999999999999999988887
Q ss_pred HcCCC--CCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC--C-Cch
Q 003531 232 EEGRR--GDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS--R-NVV 306 (812)
Q Consensus 232 ~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~ 306 (812)
..-.. .-...|-.+-+++-..|+++.|...|-...+..-..-+..+-.|..+|.+.|+++.+...|+.+.. | +..
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 64311 112347778888889999999999998887765333344556788999999999999999998875 3 345
Q ss_pred hHHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHH----HHhhcCCCCChhHH
Q 003531 307 SWNSMIAAYVEGG----NPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHK----LLDQLKLGTDVSMT 378 (812)
Q Consensus 307 ~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~----~~~~~g~~~~~~~~ 378 (812)
+...+...|...+ ..++|..++.+..+.- ..|...|..+-..+....-+ .....+. .+...+-.+.+.+.
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5556666666664 3456666666655542 33445566555555444333 2244443 34455666888899
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC-------Cc-----c-cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc-H
Q 003531 379 NSLISMYSKCKKVDRAADIFSKLQGK-------TL-----V-SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT-M 444 (812)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~~~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 444 (812)
|.+...+...|+++.|...|++.... +. + +-..+...+-..++++.|.+.|..+... .|+-++ |
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~y 533 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAY 533 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHH
Confidence 99999999999999999999876533 22 1 1122445556677899999999999875 355332 3
Q ss_pred HhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHh
Q 003531 445 VSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN-----ERHVTTWNVMIDGYGT 519 (812)
Q Consensus 445 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~ 519 (812)
.-++......+.+.+|...+..+.... ..++.+++.+.+.|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 333322233456777777777776643 4566677777888888888888888666554 3466666666665532
Q ss_pred ------------CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003531 520 ------------HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDL 587 (812)
Q Consensus 520 ------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 587 (812)
.+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+. ..-...+|-.++.+
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHC 689 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHH
Confidence 246789999999998842 335667778888889999999999999999875 22345678889999
Q ss_pred HhhcCCHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhh--------
Q 003531 588 LGRAGRLNEAWDFIQKM--P--IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYA-------- 655 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~--~--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-------- 655 (812)
|..+|++-.|.++|+.. . -..+..+..-|..++...|.+.+|...+..+..+.|.++.....++-+..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 99999999999999876 2 23367788899999999999999999999999999999887776665543
Q ss_pred -----------hcCCchHHHHHHHHHHHcCC
Q 003531 656 -----------AASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 656 -----------~~g~~~~a~~~~~~m~~~g~ 675 (812)
..+..++|.++|..|...+-
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33566788888888877543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-16 Score=179.58 Aligned_cols=367 Identities=10% Similarity=-0.020 Sum_probs=283.5
Q ss_pred hCCChHHHHHHHhcCCC------CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHH
Q 003531 286 KCGRVETARLVFDGMKS------RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERG 359 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 359 (812)
|..+++.---+|...++ .+..-...++..+.+.|++++|+.+++..+.....+. ..+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHH
Confidence 55566666666665554 1333455567788899999999999999988644333 3344445666678999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 360 IFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
...++.+.+.. +.+...+..+...+.+.|++++|.+.|++.... +...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998875 335667888889999999999999999987653 45678889999999999999999999887643
Q ss_pred CCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHH
Q 003531 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVM 513 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~l 513 (812)
|+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 443333223345778899999999999887765444445556667788999999999999998773 456788889
Q ss_pred HHHHHhCCCHHH----HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 003531 514 IDGYGTHGLGKA----AVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDL 587 (812)
Q Consensus 514 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 587 (812)
...|.+.|++++ |+..|++.++ ..|+ ...+..+...+...|++++|+..+++..+ ..| +...+..++.+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 999999999986 8999999998 5665 55788899999999999999999999885 456 56778889999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHH
Q 003531 588 LGRAGRLNEAWDFIQKM-PIEPGITVF-GAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAK 665 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~-~~~pd~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 665 (812)
|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++. ...|++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999988 456765444 3456678899999999999999999999864 244556666
Q ss_pred HHHHHHHc
Q 003531 666 VRTIMEKK 673 (812)
Q Consensus 666 ~~~~m~~~ 673 (812)
.+....+.
T Consensus 396 ~~~~~~~~ 403 (656)
T PRK15174 396 ALDGQISA 403 (656)
T ss_pred HHHHHHHh
Confidence 65555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-15 Score=158.99 Aligned_cols=541 Identities=15% Similarity=0.079 Sum_probs=376.1
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHhc--CcCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChhHHHH
Q 003531 119 LDDAVSFLIRMRYDDVAPVVYNYTYLLKVCG--DVGEIRRGKEIHGQLIVNG--FSLDLFAMTGVVNMYAKCGQIEEAYK 194 (812)
Q Consensus 119 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~l~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~ 194 (812)
.+.|...|....+.. |+.. ...+.++|. ..+++..|..+|..++... ..+|+.+.. -.++.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHH
Confidence 367777777766542 3322 233445543 5678999999999876653 455654432 356678899999999
Q ss_pred HhccCCCCCcchHHHHHHHHH------hCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHh
Q 003531 195 MFDRMPERDLVSWNTIVAGFA------QNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRA 268 (812)
Q Consensus 195 ~f~~~~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 268 (812)
.|....+-|...-++++.... ....+..++.++...-... .-|....+.|..-+.-.|+...+..+...+++.
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999888766555555443221 1223455666655544332 235566777888888899999999999888876
Q ss_pred CCCCc--hhHHHHHHHHHHhCCChHHHHHHHhcCCC--CC--chhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCh-h
Q 003531 269 GFDSI--VNVSTALVDMYAKCGRVETARLVFDGMKS--RN--VVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN-V 341 (812)
Q Consensus 269 g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ 341 (812)
..... ...+--+..+|...|++++|...|.+... +| +..+--+.+.|...|+.+.+...|+..... .||. .
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~e 377 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYE 377 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHH
Confidence 53222 23455678899999999999999987765 33 344556788899999999999999999875 4554 4
Q ss_pred hHHHHHHHHhccC----ChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhc--------CCCCcccH
Q 003531 342 TIMEALHACADLG----DLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKL--------QGKTLVSW 409 (812)
Q Consensus 342 t~~~ll~a~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~~~~~ 409 (812)
|...+-..|+..+ ..+.|..+.....+.- ..|...|-.+..+|....- ..+...|... ....+...
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5555555555554 4566666666666554 4466667666666655433 2224444332 22355678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhC---CCCCCc-----ccHH-hHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 003531 410 NAMILGYAQNGRVNEALNYFCKMRSK---NIKPDS-----FTMV-SVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMT 480 (812)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 480 (812)
|.+...+...|++++|...|.+.... ...+|. +|.. .+.......++.+.|.+.+..+++... .-+..|-
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHH
Confidence 88899999999999999999988664 223343 2222 233344566789999999999988641 1222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHh--
Q 003531 481 ALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPNDITFLCAISACSH-- 554 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~-- 554 (812)
.|.-|--..+...+|...+.... +.|+..|+-+...|.....+..|.+-|+...+.- ..+|.....+|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 23222223367778988888776 4677788888888888888888888777665532 23677777777776643
Q ss_pred ----------cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 003531 555 ----------SGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACK 621 (812)
Q Consensus 555 ----------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~ 621 (812)
.+..+.|++.|.+..+ ..| +...-|-++-.++..|++.+|.++|.+. ....+..+|-.+...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 3456788888888774 456 8888899999999999999999999887 22335568999999999
Q ss_pred hcCCHHHHHHHHHHHhcc--CCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 622 IHKNVELGEKAANRLFEL--DPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..|++..|+++|+..++. ..+++.+...|+.++...|+|.+|.+........
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999863 3466788899999999999999999988777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-15 Score=178.07 Aligned_cols=360 Identities=9% Similarity=0.027 Sum_probs=168.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 003531 277 STALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL 353 (812)
Q Consensus 277 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 353 (812)
+..+...+.+.|++++|..+|++... .+...+..++..+...|++++|+..+++..+. .|+...+..+..++...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHC
Confidence 44444444455555555555544321 22334444445555555555555555555443 22221144444444455
Q ss_pred CChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcc--------cHHHHHHHH-----HHcC
Q 003531 354 GDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLV--------SWNAMILGY-----AQNG 420 (812)
Q Consensus 354 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~-----~~~g 420 (812)
|+.+.|...++.+.+.... +..++..+...+.+.|..+.|.+.++.... ++. ....++..+ ...+
T Consensus 130 g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 5555555555555554322 333444455566666666667666665554 211 011111111 1112
Q ss_pred Ch---HHHHHHHHHHhhC-CCCCCcc-cHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003531 421 RV---NEALNYFCKMRSK-NIKPDSF-TMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTA 495 (812)
Q Consensus 421 ~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 495 (812)
++ ++|++.++.+.+. ...|+.. .+... ....+.++...|++++|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDV 256 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHH
Confidence 22 5566666666542 1122211 11000 00001112233555555
Q ss_pred HHHHHhcCCCC---hH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-----hhHHHHHHHHHHhcCcHHHHHHHHH
Q 003531 496 RALFDMMNERH---VT-TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-----DITFLCAISACSHSGLVEEGIHYFT 566 (812)
Q Consensus 496 ~~~~~~m~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~ 566 (812)
.+.|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|++++|.++++
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555554211 10 1111234455555555555555555442 121 1223334444555555555555555
Q ss_pred HHHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003531 567 SLKKDYG----------IEPV---MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEK 631 (812)
Q Consensus 567 ~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~ 631 (812)
.+..... -.|+ ...+..++.++...|++++|++.++++ ...| +...|..+...+...|+.++|+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 5543210 0111 123444555666666666666666665 3333 34455666666666666666666
Q ss_pred HHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 632 AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 632 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++++++++|++...+..++.++...|+|++|..+++.+.+.
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-15 Score=171.46 Aligned_cols=250 Identities=14% Similarity=0.057 Sum_probs=174.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003531 408 SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMY 486 (812)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 486 (812)
.|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555555556666666666555542 233 2244444455555566666666665555543 33456777888888
Q ss_pred HhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHH
Q 003531 487 AKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGI 562 (812)
Q Consensus 487 ~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 562 (812)
...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHH
Confidence 899999999999988763 3566788888899999999999999999987 4554 667888888999999999999
Q ss_pred HHHHHHHHhcCCCCCh-h-------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 003531 563 HYFTSLKKDYGIEPVM-D-------HYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 563 ~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
..|+...+ +.|+. . .++.....+...|++++|.+++++. .+.|+ ...|..++..+...|++++|+..
T Consensus 488 ~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99998774 33421 1 1222223344579999999999886 66674 45788999999999999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+++++++.+..... .....|.+|.++....+++
T Consensus 565 ~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 565 FERAAELARTEGEL--------VQAISYAEATRTQIQVQED 597 (615)
T ss_pred HHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 99999988754331 2333455677666655553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-15 Score=178.68 Aligned_cols=367 Identities=13% Similarity=0.059 Sum_probs=253.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 003531 276 VSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACA 351 (812)
Q Consensus 276 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 351 (812)
...-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++.++. .|+ ......+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 334455566678888888888887764 33445888888888999999999999988765 344 344556666777
Q ss_pred ccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHH
Q 003531 352 DLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNY 428 (812)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 428 (812)
..|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...|..++|++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 8888888888888887773 33444 777777888888888888888877653 334566677777778888888887
Q ss_pred HHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhcCC-
Q 003531 429 FCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAV---GTARALFDMMNE- 504 (812)
Q Consensus 429 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~---~~A~~~~~~m~~- 504 (812)
++.... .|+.. .-+ ....+. ...+. .+.......+++ ++|.+.++.+.+
T Consensus 173 l~~~~~---~p~~~---~~l-------~~~~~~----~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 173 IDDANL---TPAEK---RDL-------EADAAA----ELVRL----------SFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHhCCC---CHHHH---HHH-------HHHHHH----HHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 776543 33310 000 000000 00000 011111222333 667777776652
Q ss_pred ----CChH-H----HHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCC
Q 003531 505 ----RHVT-T----WNVMIDGYGTHGLGKAAVELFNKMLEGPTK-PNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGI 574 (812)
Q Consensus 505 ----~~~~-~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 574 (812)
|+.. . +...+..+...|++++|+..|+++++.+.+ |+.. -..+..++...|++++|+.+|+.+.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 2211 1 111134456779999999999999987532 4322 222577899999999999999998753211
Q ss_pred CC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------C---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 575 EP--VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-------------G---ITVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 575 ~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-------------d---~~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
.+ .......|..++.+.|++++|.++++++ ...| + ...+..+...+...|+.++|+..+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 1355677788899999999999999988 3333 2 12445666778899999999999999
Q ss_pred HhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 636 LFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+++..|+++..+..++.++...|+.++|.+.+++..+..
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999888754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-16 Score=176.19 Aligned_cols=327 Identities=10% Similarity=-0.027 Sum_probs=268.7
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHH
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGY 416 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~ 416 (812)
......++..+.+.|+.+.|..++..+......+... ...++......|++++|...|+++... +...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456667888999999999999999999887655444 444556667799999999999998754 456788889999
Q ss_pred HHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003531 417 AQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTA 495 (812)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 495 (812)
.+.|++++|+..|++.... .|+ ...+..+..++...|+.++|...+..+......+. ..+..+. .+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999874 455 45667778889999999999999998877654333 3333333 47889999999
Q ss_pred HHHHHhcCCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHH----HHHHHH
Q 003531 496 RALFDMMNER----HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEE----GIHYFT 566 (812)
Q Consensus 496 ~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 566 (812)
...++.+.+. +...+..+...+...|++++|+..|+++++. .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987642 3344555677889999999999999999984 454 5577788899999999986 799999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 567 SLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 567 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
+..+ +.| +...+..++.++.+.|++++|...+++. ...|+ ..++..+..++...|++++|+..++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8874 466 6789999999999999999999999988 55664 6678888899999999999999999999999998
Q ss_pred ccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 644 GGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 644 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
+..+..++.++...|++++|...++...+...+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 877777899999999999999999998876443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-14 Score=160.20 Aligned_cols=436 Identities=10% Similarity=0.025 Sum_probs=243.5
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCcc-hHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChH
Q 003531 213 GFAQNGFAELALDLVTRMHEEGRRGDFI-TIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVE 291 (812)
Q Consensus 213 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 291 (812)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++..+ ...+.......++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 456888999999999888774 45442 22266677777788888888777776 111222333333455777778888
Q ss_pred HHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhh
Q 003531 292 TARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQ 368 (812)
Q Consensus 292 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 368 (812)
+|.++|+++.+ .|...+..++..|...++.++|++.++++... .|+...+..++..+...++...|.+.++.+.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888887765 23455666677777778888888888777654 45544553333333334555457777777777
Q ss_pred cCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhH
Q 003531 369 LKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK-TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSV 447 (812)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 447 (812)
.. +.+...+..++....+.|-...|.++.++-+.- +...+.-+ . .+.|.+. ++.+..|+..-
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~----vr~a~~~~~~~---- 260 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQ----VRMAVLPTRSE---- 260 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHH----Hhhcccccccc----
Confidence 64 335666666777777777777777766654421 11111100 0 0001111 11000010000
Q ss_pred HHHHhccccHHHHHHHHHHHHH-hCCCCc-hhH-HHHH---HHHHHhcCCHHHHHHHHHhcCCCC----hHHHHHHHHHH
Q 003531 448 IPALAELSVIRYAKWIHALVIR-SCFEKN-VFV-MTAL---IDMYAKCGAVGTARALFDMMNERH----VTTWNVMIDGY 517 (812)
Q Consensus 448 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~-~~~-~~~l---i~~y~k~g~~~~A~~~~~~m~~~~----~~~~~~li~~~ 517 (812)
-.+-...+.+..-++.+.. .+-.|. ... ..+. +-++.+.|+..++.+.|+.+..+. ..+-.++.++|
T Consensus 261 ---~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 ---TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0000011222222222222 111111 111 1122 233455666677777776666221 22444566666
Q ss_pred HhCCCHHHHHHHHHHHHhCCC-----CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC----------CCCC---hh
Q 003531 518 GTHGLGKAAVELFNKMLEGPT-----KPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYG----------IEPV---MD 579 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~ 579 (812)
...+++++|+.+|+++....- .++......|..++..++++++|..+++.+.+... -.|+ ..
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 667777777777776655321 11222245566666677777777777776664211 0121 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhc
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
.+..++..+...|++.+|++.++++ ...| |..++..+...+...|++.+|+..++.+..++|++..+...++.++...
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 3444566666677777777777766 3444 5556666777777777777777777777777777777777777777777
Q ss_pred CCchHHHHHHHHHHHc
Q 003531 658 SMWDKLAKVRTIMEKK 673 (812)
Q Consensus 658 g~~~~a~~~~~~m~~~ 673 (812)
|+|++|..+.+...+.
T Consensus 498 ~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 498 QEWHQMELLTDDVISR 513 (822)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 7777777666665554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-13 Score=158.55 Aligned_cols=439 Identities=10% Similarity=0.044 Sum_probs=298.6
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhH---HHHHhccC
Q 003531 180 VNMYAKCGQIEEAYKMFDRMPERDLV---SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSI---LPAVANVG 253 (812)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~ 253 (812)
+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 33467889999999999998863333 24488888999999999999999987 3433333333 44677889
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHh--CCChhHHHHHHHHH
Q 003531 254 SLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVE--GGNPEEAMRIFQKM 331 (812)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m 331 (812)
+++.|.++++.+++.... +..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999988643 366667889999999999999999999987444333234445444 56666699999999
Q ss_pred HHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHH
Q 003531 332 LDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWN 410 (812)
Q Consensus 332 ~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 410 (812)
.+. .|+ ...+.....+..+.|-...|.++...-. +..+-.-.... +.+.|.+..+.-..++. +
T Consensus 196 l~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~-~-- 259 (822)
T PRK14574 196 VRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAVLPTR-S-- 259 (822)
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcccccc-c--
Confidence 987 454 5566778888889998888887665522 21111111100 01111111111100000 0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhC-CCCCCc-ccH----HhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003531 411 AMILGYAQNGRVNEALNYFCKMRSK-NIKPDS-FTM----VSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALID 484 (812)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 484 (812)
.-. +---.+.|+.-++.+... +-.|.. .-| .--+-++...++..++...++.+...+.+....+--++.+
T Consensus 260 -~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 260 -ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred -chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 000 000123344444444431 111221 111 1223455666677777777777776665555556777788
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-----------CC--Ch
Q 003531 485 MYAKCGAVGTARALFDMMNER---------HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPT-----------KP--ND 542 (812)
Q Consensus 485 ~y~k~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~ 542 (812)
+|...+++++|..+|..+... +......|.-+|...+++++|..+++++.+.-. .| |-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 888888888888888876421 222346677888888888888888888877311 12 22
Q ss_pred h-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 003531 543 I-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLG 618 (812)
Q Consensus 543 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~ 618 (812)
. .+..++..+.-.|++.+|++.++.+.. ..| |......+.+++...|+..+|++.++.+ .+.|+ ..+...++.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 2 344566778899999999999999974 466 8999999999999999999999999877 56775 456677777
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 619 ACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
+....|++++|..+.+.+++..|+++.+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888899999999999999999998754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-13 Score=133.36 Aligned_cols=330 Identities=17% Similarity=0.191 Sum_probs=216.7
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhc--CcCChHHH-HHHHHHHHHhCCCCChhHHHHH
Q 003531 103 DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCG--DVGEIRRG-KEIHGQLIVNGFSLDLFAMTGV 179 (812)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~l~~~~~~~g~~~~~~~~~~L 179 (812)
+.+=|.|+. +...|.++++.-+|++|+..|+..+...-..|++..+ ...++.-+ ++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 344555554 4567899999999999999998888777666665433 33333322 34455555555 2333333
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHH
Q 003531 180 VNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK 259 (812)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 259 (812)
|.|++.+ -+|+..| +...++..||.|+++--..+.|.++|++-.....+.+..+|+.+|.+-+- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3465544 4444444 55678999999999999999999999999998899999999999987653 3448
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHH----hcCC----CCCchhHHHHHHHHHhCCChhH-HHHHHHH
Q 003531 260 AVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVF----DGMK----SRNVVSWNSMIAAYVEGGNPEE-AMRIFQK 330 (812)
Q Consensus 260 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 330 (812)
++...|+...+.||..++|+++....+.|+++.|++.+ .+|+ +|...+|..+|..+++.+++.+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999999988876643 2222 2455555555555555444422 2233333
Q ss_pred HHHc----CCCC----ChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 003531 331 MLDQ----GVEP----TNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQ 402 (812)
Q Consensus 331 m~~~----g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 402 (812)
++.. .++| |..-|.+.+..|.+..+.+.|.+++..+.... . |-..|.. +
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~---- 395 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------Q---- 395 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------H----
Confidence 3221 1111 12234444455555555555554444332110 0 0000000 0
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC
Q 003531 403 GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE 473 (812)
Q Consensus 403 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 473 (812)
....-|.-+....++....+.-+..|+.|+-.-+-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 -~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 -HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0112244566777888888889999999998888899999999999988888888888888887776643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-11 Score=134.76 Aligned_cols=612 Identities=13% Similarity=0.132 Sum_probs=404.9
Q ss_pred hhcChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhc---cCCCCChhHHHHHHHHHHhcCCchHHHHH
Q 003531 49 VCTSLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFE---PIPDKLDALYHTMLKGYAKFASLDDAVSF 125 (812)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 125 (812)
+-++.++|.+++.++++..+. ....+..|...|-..|+.+.+...+- .+.+.|..-|-.+-.-..+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 446899999999999998765 33333389999999999999987764 44556778899999999999999999999
Q ss_pred HHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHH----HHHHHhcCChhHHHHHhccCCC
Q 003531 126 LIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGV----VNMYAKCGQIEEAYKMFDRMPE 201 (812)
Q Consensus 126 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L----i~~y~~~g~~~~A~~~f~~~~~ 201 (812)
|.+.++.. +++...+--=...|-+.|+...|..-+.++.....+.|..-.-.+ +..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998864 334333334456677899999999999999887643343333334 4445566777889888887764
Q ss_pred -----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----------------------cchHH----hHHHHHh
Q 003531 202 -----RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGD----------------------FITIV----SILPAVA 250 (812)
Q Consensus 202 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------------~~t~~----~ll~a~~ 250 (812)
-+...+|.++..|.+...++.|......+......+| ...|. .+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2344789999999999999999999988877222222 11111 2223345
Q ss_pred ccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChHHHHHHHhcCCC----CCchhHHHHHHHHHhCCChhHH
Q 003531 251 NVGSLRIGKAVHGYAMRAGF--DSIVNVSTALVDMYAKCGRVETARLVFDGMKS----RNVVSWNSMIAAYVEGGNPEEA 324 (812)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A 324 (812)
+....+....+.....+... ..++..+.-+.++|...|++.+|.++|..+.. .+...|--+...|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55666666777777777764 44567888999999999999999999998876 4677899999999999999999
Q ss_pred HHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHh--------hcCCCCChhHHHHHHHHHHhCCChHHHH
Q 003531 325 MRIFQKMLDQGVEPTNV-TIMEALHACADLGDLERGIFVHKLLD--------QLKLGTDVSMTNSLISMYSKCKKVDRAA 395 (812)
Q Consensus 325 ~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 395 (812)
.+.|.+.+.. .|+.. .-.++-..+.+.|+.++|.+++..+. ..+..|+..+..-..+.|.+.|+.++=.
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999875 45543 34455556778899999999988854 2234566666667778888888877644
Q ss_pred HHHHhcCCC--------------------------CcccHHHHHHHHHHcCChHHHHHH------HHHHhhCCCCCCc--
Q 003531 396 DIFSKLQGK--------------------------TLVSWNAMILGYAQNGRVNEALNY------FCKMRSKNIKPDS-- 441 (812)
Q Consensus 396 ~~f~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~g~~p~~-- 441 (812)
.+-..|..+ +......++.+-.+.++.....+- +.--...|+.-+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 433332210 111122233333333332211111 1111112222221
Q ss_pred ccHHhHHHHHhccccHHHHHHHHHHHHHhCC--CCch---hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C---hH
Q 003531 442 FTMVSVIPALAELSVIRYAKWIHALVIRSCF--EKNV---FVMTALIDMYAKCGAVGTARALFDMMNER-----H---VT 508 (812)
Q Consensus 442 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~---~~~~~li~~y~k~g~~~~A~~~~~~m~~~-----~---~~ 508 (812)
.-+.-++.++++.+..++|..+...+..... .++. ..-...+.+....+++..|...++.|... + ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1344556677888888888888777765421 1111 23344555666778888888888877743 3 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMV 585 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 585 (812)
.||...+...+.|+-.--.+++..+.. ..|+. ........-....+.+..|++.+-..-. ..|+ +-+--||+
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHH
Confidence 788777777776665555555555444 23333 2222222333556778888887665553 4565 33333333
Q ss_pred HHHh----------hcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-------
Q 003531 586 DLLG----------RAGRLNEAWDFIQKM-PI-EP--GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG------- 644 (812)
Q Consensus 586 ~~~~----------~~g~~~eA~~~~~~~-~~-~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------- 644 (812)
-++. |.-.+-.++.++++. .+ .+ ...+...++.+|.+.|=+-.|+..|++++++.|.+.
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~ 861 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDN 861 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCc
Confidence 3332 112234455565444 11 12 345778899999999999999999999999976432
Q ss_pred -----cchhhHhhhhhhcCCchHHHHHHHH
Q 003531 645 -----GYHVLLANIYAAASMWDKLAKVRTI 669 (812)
Q Consensus 645 -----~~~~~l~~~~~~~g~~~~a~~~~~~ 669 (812)
.+-..|.-+|...|+..-|.++.+.
T Consensus 862 ~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 862 YDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2445788899999999999888653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-11 Score=123.35 Aligned_cols=483 Identities=15% Similarity=0.095 Sum_probs=308.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHH
Q 003531 151 VGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLV 227 (812)
Q Consensus 151 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 227 (812)
..+.+.|+-++.+..+.- +.+...|. +|++..-++.|.++++...+ .+...|-+-...=-.+|+.+....+.
T Consensus 389 lE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 334444555555555542 33333333 33444455566666555443 34455655444445566665555554
Q ss_pred HH----HHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003531 228 TR----MHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI--VNVSTALVDMYAKCGRVETARLVFDGMK 301 (812)
Q Consensus 228 ~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~ 301 (812)
.+ +...|+..+...|..=..+|-..|..-....+...++..|++.. ..+|+.-.+.+.+.+.++-|+.+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 43 33456666666666666666666666666666666655554332 2345555555555555555555555444
Q ss_pred C---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHH
Q 003531 302 S---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMT 378 (812)
Q Consensus 302 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 378 (812)
+ .+...|...+..--..|..++-..+|++.... - +.....+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-----------------------------------~-pkae~lw 587 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-----------------------------------C-PKAEILW 587 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------------------C-CcchhHH
Confidence 3 23444554444444445555555555555543 2 1122233
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccc
Q 003531 379 NSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELS 455 (812)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 455 (812)
-....-+-..|++..|+.+++..-+. +...|-+-+.....+.++++|..+|.+.... .|+.-.|..-+..---++
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 33334444556666666655554432 2344555566666666666666666666553 344444444444444556
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003531 456 VIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--RH-VTTWNVMIDGYGTHGLGKAAVELFNK 532 (812)
Q Consensus 456 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (812)
..++|.++++..++. ++.-...|-.+.+.|-+.++++.|.+.|..-.+ |+ +..|-.|...--+.|...+|..++++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 666677666666554 233345677788888888999999998887663 44 45788888888888899999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 003531 533 MLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITV 612 (812)
Q Consensus 533 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~ 612 (812)
....+ +-|...|...+..-.+.|+.++|..+..+..++ .+.+...|..-|.+..+.++-..+.+.+++. +-|+.+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphV 819 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHV 819 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchh
Confidence 88753 345778889999999999999999988888765 4457778888888888888888888888877 346666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEE
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLV 684 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 684 (812)
.-+....+.....++.|...|+++++.+|++..++..+-..+...|.-++-.++++...... +.-|-.|.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~ 889 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHH
Confidence 66777778888899999999999999999999999999999999999998888888766542 22345554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=136.49 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=166.7
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 003531 101 KLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVV 180 (812)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 180 (812)
++..+|..||.|+++-...+.|.++|.+......+.+..+||.+|.+-. +..++++..+|+.....||.+++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 4456899999999999999999999999998888999999999998764 344589999999999999999999999
Q ss_pred HHHHhcCChhHHHHHhc----cCC----CCCcchHHHHHHHHHhCCChHH-HHHHHHHHHH----cCCCC----CcchHH
Q 003531 181 NMYAKCGQIEEAYKMFD----RMP----ERDLVSWNTIVAGFAQNGFAEL-ALDLVTRMHE----EGRRG----DFITIV 243 (812)
Q Consensus 181 ~~y~~~g~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p----~~~t~~ 243 (812)
++.++.|+++.|++.+- +|. +|...+|..+|..+.+.+++.+ |..++.+... ..++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999999988876443 333 3666677777777777666533 3333333332 22333 334466
Q ss_pred hHHHHHhccCChHHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCC
Q 003531 244 SILPAVANVGSLRIGKAVHGYAMRAG----FDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGG 319 (812)
Q Consensus 244 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 319 (812)
..+..|.+..+.+.|.++++...... +.++. ....-|..+....++..
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------------------~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------------------HRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 66677777777777777766543211 11110 01122334445555556
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 003531 320 NPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLIS 383 (812)
Q Consensus 320 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 383 (812)
..+.-+..|+.|+-.-.-|+..+...+++|....+.++-..+++..++..|.........-++.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 6666666666666555566666666666666666666666666666666654443333333333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-11 Score=132.93 Aligned_cols=518 Identities=12% Similarity=0.108 Sum_probs=309.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHH
Q 003531 151 VGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP---ERDLVSWNTIVAGFAQNGFAELALDLV 227 (812)
Q Consensus 151 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 227 (812)
.|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+--.. ..|..-|-.+-.-..+.|++++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377777777777777665 4556666777777777777776665443222 244556666666666777777777777
Q ss_pred HHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhCCChHHHHHHHhcCCC-
Q 003531 228 TRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA----LVDMYAKCGRVETARLVFDGMKS- 302 (812)
Q Consensus 228 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~m~~- 302 (812)
.+..+.. +++...+---...|-+.|+...|..-+..+.+...+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7666642 22322333334455666777777766666666544333322222 33445556666777777766554
Q ss_pred ----CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCh----------------------hhH----HHHHHHHhc
Q 003531 303 ----RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN----------------------VTI----MEALHACAD 352 (812)
Q Consensus 303 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~----~~ll~a~~~ 352 (812)
-+...+|.++..|.+...++.|......+......+|. ..| .-+.-+..+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23445778888888888888888888777662212211 111 122233445
Q ss_pred cCChHHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC----CcccHHHHHHHHHHcCChHHHH
Q 003531 353 LGDLERGIFVHKLLDQLK--LGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK----TLVSWNAMILGYAQNGRVNEAL 426 (812)
Q Consensus 353 ~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 426 (812)
....+....+.....+.. +..+...+.-+.++|...|++.+|.++|..+... +...|--+...|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 555566666666666666 4455677888888899999999999999888753 5567888888999999999999
Q ss_pred HHHHHHhhCCCCCCc-ccHHhHHHHHhccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003531 427 NYFCKMRSKNIKPDS-FTMVSVIPALAELSVIRYAKWIHALVI--------RSCFEKNVFVMTALIDMYAKCGAVGTARA 497 (812)
Q Consensus 427 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 497 (812)
+.|...+.. .|+. ..-.+|-..+.+.|+.++|.+.+..+. ..+..|+..+.--..++|.+.|+.++=..
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999888773 4553 233344555677888888888887743 33455666666777788888888777444
Q ss_pred HHHhcCC---------C-----------------ChHHHHHHHHHHHhCCCHHHHH------HHHHHHHhCCCCCCh--h
Q 003531 498 LFDMMNE---------R-----------------HVTTWNVMIDGYGTHGLGKAAV------ELFNKMLEGPTKPND--I 543 (812)
Q Consensus 498 ~~~~m~~---------~-----------------~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p~~--~ 543 (812)
+-..|.. | +..+--.++.+-.+.++..... ..+.--...|+.-+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 3333321 0 0111112222222222211110 011111112222222 1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh----HHHHHHHHHhhcCCHHHHHHHHHhC--C--C--CC-CHHH
Q 003531 544 TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD----HYGAMVDLLGRAGRLNEAWDFIQKM--P--I--EP-GITV 612 (812)
Q Consensus 544 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~eA~~~~~~~--~--~--~p-d~~~ 612 (812)
.|.-++.+..+.+.+++|..+...+...+-+.-+.. .-.+++.+-...+++.+|.+.++.| . + .| -...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 345566677778888888887777765543333332 2334555556777888888877777 1 1 23 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-ccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFELDPDE-GGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
|+...+...++++-.-=.+....+....|++ +......|......|.|..|.+.+...-.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 6666666666666555555666666666666 44455566667777788888776655544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-13 Score=131.67 Aligned_cols=271 Identities=12% Similarity=0.062 Sum_probs=199.1
Q ss_pred HHHhCCChHHHHHHHHhcCCCCcccHHH-----HHHHHHH-cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH
Q 003531 384 MYSKCKKVDRAADIFSKLQGKTLVSWNA-----MILGYAQ-NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI 457 (812)
Q Consensus 384 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 457 (812)
-|.+.|+++.|.++++-...+|..+-.+ -.--|.+ ..++.+|.++-+...... +-|....+.--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3667788888877777766655432221 1112233 235666666555443321 11111111111223346788
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKML 534 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (812)
++|.+.+.+.+...-.-....||. .-.+-+.|++++|++.|-++. ..++...-.+.+.|....++.+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 888888888876554333344442 334677899999999998765 5677778888899999999999999998887
Q ss_pred hCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003531 535 EGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 535 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~ 611 (812)
. +.| |+....-|...|-+.|+-.+|.+.+-.- |..-| +.++...|..-|....-.++|..+|+++ -++|+.+
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7 455 5677888999999999999999887653 45556 8999999999999999999999999998 5799999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCch
Q 003531 612 VFGAMLGACK-IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWD 661 (812)
Q Consensus 612 ~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 661 (812)
-|..|+..|. +.||+..|...++.....-|.|...+-.|..++...|..+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 9999998875 6799999999999999999999999999999998888644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-12 Score=136.73 Aligned_cols=524 Identities=11% Similarity=0.062 Sum_probs=304.9
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 003531 124 SFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD 203 (812)
Q Consensus 124 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 203 (812)
.++..|...|+.|+.+||..+|..||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999888 9999988888888899999999888888877665 677
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHH-HH-------HcCCCCCcchHHhHHHHHhccC-C------hHHHHHHHHHHHHh
Q 003531 204 LVSWNTIVAGFAQNGFAELALDLVTR-MH-------EEGRRGDFITIVSILPAVANVG-S------LRIGKAVHGYAMRA 268 (812)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~ 268 (812)
..+|+.|..+|.+.|+... ++..++ |. ..|+.--..-|...+.+|...- + ...-+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998755 222222 22 1232222222222222221111 0 11122333334443
Q ss_pred CC--CCchhHHHH--HHHHHHh-CCChHHHHHHHhcCCC-CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh
Q 003531 269 GF--DSIVNVSTA--LVDMYAK-CGRVETARLVFDGMKS-RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT 342 (812)
Q Consensus 269 g~--~~~~~~~~~--li~~y~~-~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 342 (812)
+. +........ .+.-... ...+++-..+-....+ ++..++.+.+..-..+|+.+.|..++.+|.+.|++.+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 31 111100000 1111111 1223333333333333 8899999999999999999999999999999999999998
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCh
Q 003531 343 IMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRV 422 (812)
Q Consensus 343 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 422 (812)
|..+|-+ .++......+..-|...|+.|+..++.-.+-...+.|....+.+..+.-..-....+..+..+...+.+.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8888876 8888889999999999999999999987777776666533332221110000111222333321111111
Q ss_pred H-----HHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHH
Q 003531 423 N-----EALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE---KNVFVMTALIDMYAKCGAVGT 494 (812)
Q Consensus 423 ~-----~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~---~~~~~~~~li~~y~k~g~~~~ 494 (812)
+ -....+.+..-.|+.-....| ++..-....|.-+...++.+.+...-.. .++..+.. .
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~------------~ 385 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA------------L 385 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHH------------H
Confidence 1 111222222222332222222 2222223345555566655555332111 12222222 2
Q ss_pred HHHHHHhcCCCChH-HHHHHHHHHHh---CC------------CHHHHHHHHHHHHh----CCCCC-------ChhHHHH
Q 003531 495 ARALFDMMNERHVT-TWNVMIDGYGT---HG------------LGKAAVELFNKMLE----GPTKP-------NDITFLC 547 (812)
Q Consensus 495 A~~~~~~m~~~~~~-~~~~li~~~~~---~g------------~~~~A~~~~~~m~~----~g~~p-------~~~t~~~ 547 (812)
+..+|.+...+... .++ .-.+... .. +...+++-+..+.. .-..| -...-..
T Consensus 386 lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 34444444433221 111 1111111 11 11111111111100 00111 0112345
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHh
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP-----IEPGITVFGAMLGACKI 622 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~~pd~~~~~~ll~~~~~ 622 (812)
++.+|++.-+..+++..-+..... .- ...|..||+.+.+..++++|..+.++.. +.-|..-+..+.+...+
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~--lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDL--LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 566666666666666544333321 11 2679999999999999999999998883 22344566777888889
Q ss_pred cCCHHHHHHHHHHHhc---cCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCcc
Q 003531 623 HKNVELGEKAANRLFE---LDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQK 677 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 677 (812)
++....+..+.++..+ ..|.-......+.|--+..|+.+...+.++.+...|+..
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9989999988887765 334445566677788888999999999999998888754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-10 Score=115.86 Aligned_cols=418 Identities=12% Similarity=0.082 Sum_probs=324.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChh
Q 003531 246 LPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPE 322 (812)
Q Consensus 246 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 322 (812)
-++.....+.+.|+-++..+++.- +.+...| -+|.+..-++.|.+++.+..+ .+...|.+-...--.+|+.+
T Consensus 383 WKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 355556666677888888877753 3333333 345566677888888877665 46778877777777888888
Q ss_pred HHHHHHHHH----HHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhCCChHHHHH
Q 003531 323 EAMRIFQKM----LDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTD--VSMTNSLISMYSKCKKVDRAAD 396 (812)
Q Consensus 323 ~A~~l~~~m----~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~ 396 (812)
...+++.+- ...|+..+...|..=..+|-..|..-.+..|...++..|++.. ..+++.-.+.+.+.+.++-|+.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 888877654 4568888888888888899999999999999999988887543 4567777888999999999999
Q ss_pred HHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC
Q 003531 397 IFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE 473 (812)
Q Consensus 397 ~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 473 (812)
+|....+- +...|...+..--..|..++-..+|++.... ++-....+.......-..|++..|+.++..+.+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 99877653 4467887777777788899999999998875 2333445555555666779999999999998887644
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHH
Q 003531 474 KNVFVMTALIDMYAKCGAVGTARALFDMMN--ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAIS 550 (812)
Q Consensus 474 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 550 (812)
+..+|-+-+..-....+++.|..+|.+.. .+....|.--+...--.+..++|++++++.++ .-|+ .-.|..+..
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhH
Confidence 77888888999999999999999998877 57777887777777778899999999999988 5677 457888888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMP-IEP-GITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-d~~~~~~ll~~~~~~g~~~ 627 (812)
.+.+.++++.|...|..=.+ .-| .+..|-.|.++=-+.|++-.|..++++.. -.| |...|-..+..-.++|+.+
T Consensus 694 i~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 88999999999988876543 234 56778888888889999999999999883 244 6779999999999999999
Q ss_pred HHHHHHHHHhccCCCC------------------------------ccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 628 LGEKAANRLFELDPDE------------------------------GGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
+|..+..++++--|++ +-....++.+++...+++.|++.|.+..+.+.
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999988888755543 33555678889999999999999998877543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-15 Score=151.89 Aligned_cols=253 Identities=18% Similarity=0.127 Sum_probs=113.8
Q ss_pred HHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHH-HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003531 415 GYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIP-ALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVG 493 (812)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 493 (812)
.+.+.|++++|++++++......+|+...|..++. .+...++.+.|...++.+...+.. ++..+..++.. ...++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc
Confidence 34444555555555543332221233333333222 233345555555555555544322 44456666666 6788899
Q ss_pred HHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 494 TARALFDMMN--ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPNDITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 494 ~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
+|.++++..- .++...|..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|+..+++..+
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988887664 3566778888889999999999999999987633 344666788888889999999999999999985
Q ss_pred hcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccch
Q 003531 571 DYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYH 647 (812)
Q Consensus 571 ~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 647 (812)
. .| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+.+|+|+...
T Consensus 175 ~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 L---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp H----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred c---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 4 67 5888999999999999999988888776 1234677899999999999999999999999999999999999
Q ss_pred hhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 648 VLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 648 ~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
..+++++...|+.++|.+++++..+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-11 Score=129.16 Aligned_cols=590 Identities=12% Similarity=0.081 Sum_probs=317.1
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHhhcCCChhHHHHhhccCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCC
Q 003531 59 ILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDK----LDALYHTMLKGYAKFASLDDAVSFLIRMRYDDV 134 (812)
Q Consensus 59 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 134 (812)
.+..+...|+.|+.+.+.+||.-||..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445566788865544458888888888888887 77766432 2345666666666666665543
Q ss_pred CCCcchHHHHHHHhcCcCChHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhcCChh
Q 003531 135 APVVYNYTYLLKVCGDVGEIRR---GKEIHGQLI----VNGF-----------------SLDLFAMTGVVNMYAKCGQIE 190 (812)
Q Consensus 135 ~p~~~t~~~ll~~~~~~~~~~~---a~~l~~~~~----~~g~-----------------~~~~~~~~~Li~~y~~~g~~~ 190 (812)
.|.+.||..|+.+|...||+.. .++.+..+. ..|+ -||.. .++....-.|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 4666677777777777666543 222111111 1111 11111 1122222223334
Q ss_pred HHHHHhccCC----------------------------------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003531 191 EAYKMFDRMP----------------------------------ERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRR 236 (812)
Q Consensus 191 ~A~~~f~~~~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 236 (812)
.+.+++..+| .++..+|.+++..-..+|+.+.|..++.+|.+.|+.
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 4444333332 156777888888888888888888888888888888
Q ss_pred CCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHH
Q 003531 237 GDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYV 316 (812)
Q Consensus 237 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 316 (812)
.+..-|-.+|-+ .++...+..+..-|...|+.|+..|+...+-...+.|....+....+.-.--....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 887777776655 67777888888888888888888888777666666554332222111100001112222222211
Q ss_pred hCCCh-----hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCC---CCChhHHHHHHHHHHhC
Q 003531 317 EGGNP-----EEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKL---GTDVSMTNSLISMYSKC 388 (812)
Q Consensus 317 ~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~~~ 388 (812)
.+.+. .-....+.+..-.|+......|..... ....|.-+...++-..+..-.. ..++..+..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 11111 111112222222233322222222211 1224444455555444432221 11222233333333221
Q ss_pred C----------------------ChHHHHHHHHhcCC----------------CCcccH-----------HHHHHHHHHc
Q 003531 389 K----------------------KVDRAADIFSKLQG----------------KTLVSW-----------NAMILGYAQN 419 (812)
Q Consensus 389 g----------------------~~~~A~~~f~~~~~----------------~~~~~~-----------~~li~~~~~~ 419 (812)
- ......++...... +..+.| +.++..++..
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 1 11111111111110 111122 3344445554
Q ss_pred CChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003531 420 GRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIR--SCFEKNVFVMTALIDMYAKCGAVGTARA 497 (812)
Q Consensus 420 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~~~li~~y~k~g~~~~A~~ 497 (812)
-+..+++..-+..... .-| ..|..++.-|.....++.|..+.+++.. ..+..|...+..+.+...+.+...++..
T Consensus 473 ~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 4555555433332221 111 4578888888888899999988887754 3445677778889999999999999999
Q ss_pred HHHhcCC-----CC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------------------------------C
Q 003531 498 LFDMMNE-----RH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP------------------------------N 541 (812)
Q Consensus 498 ~~~~m~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------------------------~ 541 (812)
++.++.+ ++ ..+.--+.++-+..|+.+.-.++++-+...|+.- .
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~ 629 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPY 629 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCC
Confidence 9988873 22 2244445566667777777766666655444322 1
Q ss_pred hhHHHHHHHHH---------------------HhcCcHHHHHHHHHHHHHhcCC---------------CC---------
Q 003531 542 DITFLCAISAC---------------------SHSGLVEEGIHYFTSLKKDYGI---------------EP--------- 576 (812)
Q Consensus 542 ~~t~~~ll~a~---------------------~~~g~~~~a~~~~~~m~~~~~~---------------~p--------- 576 (812)
+.....+.+.. .+.|++.++..+.+ ..|+ .|
T Consensus 630 P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt~ 705 (1088)
T KOG4318|consen 630 PKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELTH 705 (1088)
T ss_pred hHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHHh
Confidence 11111222211 12222222222111 0011 11
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCcc---chhhH
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHK---NVELGEKAANRLFELDPDEGG---YHVLL 650 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~---~~~~l 650 (812)
+.....-|+..|.+.|+++.|..++.+++..|.......|...++.+. ++-++...-+++-++.|..+. .|.-.
T Consensus 706 ~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~ 785 (1088)
T KOG4318|consen 706 ELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGY 785 (1088)
T ss_pred HhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhh
Confidence 011222366788899999999999999988888888888888877665 455666666777776654433 33333
Q ss_pred hhhhhhcCCchHHHHHHHHHHHcC
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+-+.......+-|.+.+.+..+..
T Consensus 786 a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 786 AFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHcc
Confidence 444444445557788888888763
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-13 Score=139.62 Aligned_cols=275 Identities=15% Similarity=0.042 Sum_probs=218.7
Q ss_pred ChHHHHHHHHhcCCC--Ccc-cHHHHHHHHHHcCChHHHHHHHHHHhhCC-CC-CCcccHHhHHHHHhccccHHHHHHHH
Q 003531 390 KVDRAADIFSKLQGK--TLV-SWNAMILGYAQNGRVNEALNYFCKMRSKN-IK-PDSFTMVSVIPALAELSVIRYAKWIH 464 (812)
Q Consensus 390 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~a~~i~ 464 (812)
+..+|...|..++.. |.. ...-+..+|...+++++|.++|+...+.. .. -+...|.++|.-+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 457888888886543 332 33456778999999999999999988742 11 2455677766544321 111222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 003531 465 A-LVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER---HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP 540 (812)
Q Consensus 465 ~-~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 540 (812)
. .+++. -+..+.+|.++.+.|.-.++.+.|.+.|++..+- ...+|+.+..-+.....+++|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 1 22222 2557889999999999999999999999998853 457888888888899999999999999987 667
Q ss_pred Chh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003531 541 NDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAM 616 (812)
Q Consensus 541 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~l 616 (812)
... .|..+...|.++++++.|+-.|++.. .+.| +.....+++..+.+.|+.|+|+++++++ .++| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 644 78889999999999999999999887 6888 7888889999999999999999999998 5555 55555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 617 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+..+...+++++|+..+|++.++-|+++..|.+++.+|-+.|+.+.|..-|..|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6677788999999999999999999999999999999999999999999888887653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-11 Score=119.86 Aligned_cols=358 Identities=12% Similarity=0.115 Sum_probs=220.3
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhH--HHHHH
Q 003531 271 DSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTI--MEALH 348 (812)
Q Consensus 271 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~ 348 (812)
..|.+..-..--.+-+.|....|+..|......-+..|.+.+...--.-+.+. ...... |...|...+ -.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----~~~l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----LSILVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----HHHHHh-cCcccchHHHHHHHHH
Confidence 33433333333344566777788888777665444445444333222222221 111111 112111111 12334
Q ss_pred HHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHH
Q 003531 349 ACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNY 428 (812)
Q Consensus 349 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 428 (812)
++......+++.+-.......|++.+...-+-...++-...++|+|+.+|+++.+.|+.-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------------------- 296 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL------------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-------------------
Confidence 5555556666766677777777666655555555555555666666666666655433211
Q ss_pred HHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C
Q 003531 429 FCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---R 505 (812)
Q Consensus 429 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~ 505 (812)
-|..||+.+|-+-.....+..--+....+- .+ -+.+...+.+-|+-.++.++|...|++..+ .
T Consensus 297 ----------~dmdlySN~LYv~~~~skLs~LA~~v~~id--Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~ 362 (559)
T KOG1155|consen 297 ----------DDMDLYSNVLYVKNDKSKLSYLAQNVSNID--KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK 362 (559)
T ss_pred ----------hhHHHHhHHHHHHhhhHHHHHHHHHHHHhc--cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc
Confidence 022233333322111111111001111111 11 123344556667777888888888887764 3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 506 HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
....|+.|..-|....+...|++-+++.++ +.| |-..|..+..+|.-.+...-|+-+|++.. .+.| |...|.+
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~a 437 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVA 437 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHH
Confidence 456888888889888888999999999888 555 56688899999999999999999888876 4677 7888999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCccchhhHhhhh
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFE-------LDPDEGGYHVLLANIY 654 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~ 654 (812)
|++.|.+.++++||.+-|++. .-+.+...+..|...+.+.++.++|..++++-++ .+|+-..+-..|+.-+
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 999999999999999998887 2233457888888889999999999999988876 3343344555688888
Q ss_pred hhcCCchHHHHHHHHHH
Q 003531 655 AAASMWDKLAKVRTIME 671 (812)
Q Consensus 655 ~~~g~~~~a~~~~~~m~ 671 (812)
.+.++|++|..+-....
T Consensus 518 ~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVL 534 (559)
T ss_pred HhhcchHHHHHHHHHHh
Confidence 88899999877665443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-10 Score=116.72 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=202.4
Q ss_pred HHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCC-
Q 003531 415 GYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFE--KNVFVMTALIDMYAKCGA- 491 (812)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y~k~g~- 491 (812)
++-...+.+++++-.......|+.-+...-+....+.-...++++|..+|+.+.+...- .|..+|+.++ |.+..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 34444455666666666666555444433333334445566777777777777776321 2555666554 333322
Q ss_pred -HH-HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 492 -VG-TARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 492 -~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
+. -|..++ .+.+--+.|.-.+.+-|.-.++.++|...|++.++ +.|. ...|+.+..-|....+...|++-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 122222 22223344555566777888999999999999999 5666 557888889999999999999999998
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 569 KKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 569 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
+ .+.| |-..|-.|+.+|.-.+...-|+-+|+++ ..+| |...|.+|+..|.+.++.++|++.|.+++.....+..
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 8 5778 8889999999999999999999999999 6778 7889999999999999999999999999999887889
Q ss_pred chhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003531 646 YHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKA 719 (812)
Q Consensus 646 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 719 (812)
+++.|+++|-+.++.++|.+.+++-.+.-. ..+ ...|+..++...|.+-+.+|+.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~----------~eg---------~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSE----------LEG---------EIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hhc---------ccchHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999987766310 000 1145566666667666666553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=134.54 Aligned_cols=265 Identities=16% Similarity=0.159 Sum_probs=207.9
Q ss_pred CChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH-HH
Q 003531 420 GRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF--EKNVFVMTALIDMYAKCGAVGT-AR 496 (812)
Q Consensus 420 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~~-A~ 496 (812)
-+..+|+..|...... +.-.......+..+|...++.++++.+|+.+.+... -.+..+|++.+--+-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568899999985443 333345666778899999999999999999987531 2366677776633332211111 22
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC
Q 003531 497 ALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575 (812)
Q Consensus 497 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 575 (812)
.+.+. ....+.+|-++.+.|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... .
T Consensus 412 ~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 22222 244578999999999999999999999999999 778 57899988888899999999999998765 3
Q ss_pred CChhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhH
Q 003531 576 PVMDHYGA---MVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 576 p~~~~~~~---li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
.|+.+|++ |+-.|.|.++++.|+-.|+++ .+.| +.++.-.++..+.+.|+.|+|+.++++++.++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 45556665 567788999999999999998 7888 566777778889999999999999999999999999999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKA 719 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 719 (812)
+.++...+++++|.+.+++.++. -|+-..++..+.++.++|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHcc
Confidence 99999999999999999999875 24555566666666666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-09 Score=108.44 Aligned_cols=477 Identities=13% Similarity=0.124 Sum_probs=294.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcc-hHHHHHHHHHhCCChHHHHHHHH
Q 003531 152 GEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE--RDLV-SWNTIVAGFAQNGFAELALDLVT 228 (812)
Q Consensus 152 ~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~ 228 (812)
+++..|+.++++.+... ..+...|-..+.+=.++..+..|+.+|+.... |-+. .|---+..=-..|
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg---------- 155 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG---------- 155 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----------
Confidence 34455555666655544 44555566666666666666666666655432 1111 2222222222233
Q ss_pred HHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC--CCCch
Q 003531 229 RMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMK--SRNVV 306 (812)
Q Consensus 229 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~ 306 (812)
++..|+++|..-.+ ..|+...|++.|+.=.+...++.|+.+++... .|++.
T Consensus 156 -------------------------Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 156 -------------------------NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred -------------------------ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence 44444444444332 24555666666666666666666666666543 36666
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHhhcCCCC-ChhHHHHH
Q 003531 307 SWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNV----TIMEALHACADLGDLERGIFVHKLLDQLKLGT-DVSMTNSL 381 (812)
Q Consensus 307 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~L 381 (812)
+|--....=.++|+...|..+|....+. -.|.. .|++...-=.+...++.|.-|++..+..-... ....|..+
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 6666666556666666666666655543 11122 22222222234456677777777776653221 13444445
Q ss_pred HHHHHhCCChHHHHHH--------HHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCc-------cc
Q 003531 382 ISMYSKCKKVDRAADI--------FSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDS-------FT 443 (812)
Q Consensus 382 i~~y~~~g~~~~A~~~--------f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t 443 (812)
...--+.|+.....+. ++.+...|+ .+|--.+..--..|+.+...++|++.+.. ++|-. ..
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH
Confidence 4444455554333322 233333443 57777777777889999999999998875 55521 11
Q ss_pred HHhHHHHH---hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCChHHHHHHH
Q 003531 444 MVSVIPAL---AELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYA----KCGAVGTARALFDMMN--ERHVTTWNVMI 514 (812)
Q Consensus 444 ~~~ll~a~---~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~m~--~~~~~~~~~li 514 (812)
|.-+=-+| ....+++.++++++..++ -++....++.-+--||+ ++.++..|.+++.... .|...++...|
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI 444 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence 21111122 346788899999988887 34445566666655555 6789999999998776 57778888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
..-.+.+.++....++++.++ ..| |..+|......-...|+.+.|..+|+-.+....++--...|.+.||-=...|.
T Consensus 445 elElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 888899999999999999999 455 57788888877788999999999999888653333334567777887789999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc----cCCCCc--cchhhH
Q 003531 594 LNEAWDFIQKM-PIEPGITVFGAMLGACK-----IHK-----------NVELGEKAANRLFE----LDPDEG--GYHVLL 650 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~pd~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~--~~~~~l 650 (812)
++.|..+++++ ...+..-+|-++..--. +.+ +...|..+|+++.. .+|... ..+...
T Consensus 523 ~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw 602 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAW 602 (677)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999988 44555668888765432 344 66788888888865 334221 122233
Q ss_pred hhhhhhcCCchHHHHHHHHHHH
Q 003531 651 ANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
-++-...|.-.+...|-..|.+
T Consensus 603 ~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 603 KNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHHhcCchhhHHHHHHhccH
Confidence 4444566777777777777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-10 Score=117.65 Aligned_cols=255 Identities=13% Similarity=0.047 Sum_probs=189.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 003531 413 ILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAV 492 (812)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 492 (812)
..-+-..+++.+.+++++...+. .++....+..-|..+...|+..+-..+-..+++. .+....+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 33444455566666666555543 2233333333344444444444433333333332 344556677777777778999
Q ss_pred HHHHHHHHhcCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003531 493 GTARALFDMMNERH---VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLK 569 (812)
Q Consensus 493 ~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 569 (812)
++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+-|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998876433 458999999999999999999999888773 33344455666678899999999999998876
Q ss_pred HhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--C---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 570 KDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--P---IEP----GITVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 570 ~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~---~~p----d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
++-| |+..++-++-+....+.+.+|..+|+.. + ..+ -..+|+.|+.+|++.+.+++|+..+++++.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 7888 7888888888888899999999999876 1 111 2346888999999999999999999999999
Q ss_pred CCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 640 DPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 640 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.|.++.+|..+|-+|...|+.+.|...+.+..-.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999877643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=115.86 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=191.5
Q ss_pred HHHHHcCChHHHHHHHHHHhhCCCCCCcccH--HhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003531 414 LGYAQNGRVNEALNYFCKMRSKNIKPDSFTM--VSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491 (812)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 491 (812)
.-|.++|+++.|+++++-+.+..-+.-...- ...+.-.....++..|.++-+..+... .-+......-.+.-.-.|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 4578999999999999888765322221111 122222222345666666655554322 1111111111222334699
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHH---HHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 492 VGTARALFDMMNERHVTTWNVMID---GYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 492 ~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
+++|.+.|.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+......+.+.|....+..+|++++...
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999999888765444433 467789999999999888652 2335567778888999999999999998766
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 569 KKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 569 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
. .+.| |+.+.+-|.++|-+.|+-..|++..-.. ..-| +..+..=|..-|....-.+.|+.+|+++--+.|+.+.
T Consensus 585 ~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 N---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 5 4566 8999999999999999999999876443 3334 3333222444444556678999999999999998776
Q ss_pred chhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 003531 646 YHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLI 714 (812)
Q Consensus 646 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 714 (812)
--..++..+.+.|+++.|..+++.+..+=. .+..|--.. +-++||.--.+.++...+|+++.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkfl------vri~~dlgl~d~key~~klek~e 723 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFL------VRIAGDLGLKDAKEYADKLEKAE 723 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHH------HHHhccccchhHHHHHHHHHHHH
Confidence 677788889999999999999998876421 111221110 12455554555666555555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-10 Score=117.28 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=173.6
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHH
Q 003531 454 LSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELF 530 (812)
Q Consensus 454 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (812)
.|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|+... ..|..+|.--...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46677778888888776544332 25566677999999999999999877 345667777777777788999999999
Q ss_pred HHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003531 531 NKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP 608 (812)
Q Consensus 531 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p 608 (812)
++.+. +.|+ ...|..+..+..+.+.+++++..|++.+++ ++..++.|+.....+...+++++|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 6775 568888888889999999999999999976 4456889999999999999999999999887 5555
Q ss_pred C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 609 G---------ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 609 d---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+ +.+-.+++-.- -.+|+..|+.+++++++++|....+|..|+.+-...|+.++|.++|+....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 33333333332 338999999999999999999999999999999999999999999987654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-10 Score=125.63 Aligned_cols=255 Identities=11% Similarity=0.016 Sum_probs=167.9
Q ss_pred hccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCChHHHHH
Q 003531 351 ADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK---TLVSWNAMILGYAQNGRVNEALN 427 (812)
Q Consensus 351 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 427 (812)
...|+.+.+.+.+..+.+................+...|+.+.|.+.++++.+. ++.....+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 444455555555544443321111112223355677777888888777776653 44566777788888888888888
Q ss_pred HHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---C
Q 003531 428 YFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---E 504 (812)
Q Consensus 428 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~ 504 (812)
++..+.+.+..++. .+..+- ...|..++....+..+.+...++++.++ .
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888776543211 111000 0012222333333344556666666665 3
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
.++..+..+..++...|+.++|.+++++..+ ..||... .++.+....++.+++.+..+...+. .| |...+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 5677888888888889999999998888887 3454422 1233444558888888888888754 44 6677888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELD 640 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 640 (812)
++.++.+.|++++|.+.|+++ ...|+...+..|...+...|+.++|..++++.+.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888999999999999999888 677888888888888889999999999999887754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=126.11 Aligned_cols=275 Identities=9% Similarity=-0.011 Sum_probs=198.6
Q ss_pred CCChHHHHHHHHhcCCC--Cc-ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHH--hHHHHHhccccHHHHHH
Q 003531 388 CKKVDRAADIFSKLQGK--TL-VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMV--SVIPALAELSVIRYAKW 462 (812)
Q Consensus 388 ~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 462 (812)
.|+++.|++.+....+. ++ ..+-.......+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777776655443 12 22222233346778888888888887653 45543332 22345667788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h--------HHHHHHHHHHHhCCCHHHHHHHHH
Q 003531 463 IHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH---V--------TTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 463 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777665 4467778888899999999999998888887421 1 134444444445556667777777
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 003531 532 KMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-G 609 (812)
Q Consensus 532 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d 609 (812)
.+-+. .+.+......+..++...|+.++|...+++..+. .|+.... ++......|+.+++.+.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 3456778888999999999999999999888753 4554322 233334569999999999887 5566 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 610 ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 610 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+.....+...|...|++++|...|+++++.+|++ ..+..|+.++.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888999999999999999999999999964 5678999999999999999999987654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-10 Score=122.38 Aligned_cols=289 Identities=13% Similarity=0.042 Sum_probs=150.9
Q ss_pred hCCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 003531 317 EGGNPEEAMRIFQKMLDQGVEPTNV-TIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAA 395 (812)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 395 (812)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776665543 23322 223333445555666666666666554432222233344466667777777777
Q ss_pred HHHHhcCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC
Q 003531 396 DIFSKLQGK---TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF 472 (812)
Q Consensus 396 ~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 472 (812)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 777776543 344566677777777777777777777776643221 11100000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHH---H
Q 003531 473 EKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITF---L 546 (812)
Q Consensus 473 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 546 (812)
..+..+++.-......+...+.++..+. .+...+..++..+...|+.++|.+++++.++. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112223444445555542 47778888888888888999999888888883 4554321 1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNV 626 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~ 626 (812)
.........++.+.+.+.++...+. .| ..|+.....++++.|.+.|++
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~---~p-----------------------------~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKN---VD-----------------------------DKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHh---CC-----------------------------CChhHHHHHHHHHHHHHcccH
Confidence 1111112234444444444444432 12 111113445555555555555
Q ss_pred HHHHHHHH--HHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 627 ELGEKAAN--RLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 627 ~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
++|.+.++ ++++..|++ ..+.+|+.++.+.|+.++|.+++++.
T Consensus 352 ~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555 344455533 23445555555555555555555544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=123.98 Aligned_cols=250 Identities=13% Similarity=0.011 Sum_probs=172.5
Q ss_pred HcCChHHHHHHHHHHhhCCCCCCccc-HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003531 418 QNGRVNEALNYFCKMRSKNIKPDSFT-MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTAR 496 (812)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 496 (812)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666655443 233222 22333445556777777777766655432333334444577788899999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH---HhcCcHHHHHHHHHHHHH
Q 003531 497 ALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC---SHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 497 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~ 570 (812)
+.++.+.+ .+...+..+...|.+.|++++|.+++.++.+.++.+..........+. ...+..+++.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998873 356678888999999999999999999999986543332211111222 333444444455555554
Q ss_pred hcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 571 DYG--IEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITV---FGAMLGACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 571 ~~~--~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
... ...+...+.+++..+.+.|+.++|.+.+++. ...||... +..........++.+.+.+.+++.++..|+|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 311 1137889999999999999999999999998 54565442 12222223445888999999999999999999
Q ss_pred --cchhhHhhhhhhcCCchHHHHHHHH
Q 003531 645 --GYHVLLANIYAAASMWDKLAKVRTI 669 (812)
Q Consensus 645 --~~~~~l~~~~~~~g~~~~a~~~~~~ 669 (812)
.....++++|.+.|+|++|.+.++.
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8889999999999999999999995
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=133.82 Aligned_cols=251 Identities=15% Similarity=0.145 Sum_probs=104.3
Q ss_pred HHHHHHHhCCChHHHHHHHHhc-C----CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhcc
Q 003531 380 SLISMYSKCKKVDRAADIFSKL-Q----GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAEL 454 (812)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 454 (812)
.+..++.+.|++++|.+++++. . ..|+.-|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466677778888888887432 2 224455666666666777888888888887765422 33444455544 577
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhCCCHHHHHHH
Q 003531 455 SVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN-----ERHVTTWNVMIDGYGTHGLGKAAVEL 529 (812)
Q Consensus 455 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (812)
++.++|..+.....+.. ++...+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776554432 455566777888888899998888888754 35677888888889999999999999
Q ss_pred HHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 003531 530 FNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIE 607 (812)
Q Consensus 530 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 607 (812)
+++.++ ..|+ ......++..+...|+.+++.++++...+.. ..+...+..++.+|...|+.++|+..+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999988 5675 5567788888888999999888888887652 346677888899999999999999999887 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 608 P-GITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 608 p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
| |+.+...+..++.+.|+.++|..+.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 677778888889999999999999888765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-09 Score=105.74 Aligned_cols=414 Identities=12% Similarity=0.106 Sum_probs=286.4
Q ss_pred hCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 003531 286 KCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFV 362 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 362 (812)
..+++..|+.+|+.... +++..|--.+..=.++..+..|..+++..+..-...|..-| --+..=...|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 45667778888887765 56677777777778888888888888887764333333322 222233456888888888
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC--CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC
Q 003531 363 HKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQ--GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD 440 (812)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 440 (812)
|..-.+. .|+...|++.|+.-.+-..++.|+.++++.. .|++.+|--...-=-++|+...|..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 8876654 7888888888888888888888888888754 567777877777777888888888888877653 122
Q ss_pred cccHHhHHHHH----hccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCH---HHHHHH-----HHhcCC---
Q 003531 441 SFTMVSVIPAL----AELSVIRYAKWIHALVIRSCFEK-NVFVMTALIDMYAKCGAV---GTARAL-----FDMMNE--- 504 (812)
Q Consensus 441 ~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~---~~A~~~-----~~~m~~--- 504 (812)
...-..+..++ ......+.|.-++..++..=... ....|..++..--+-|+. +++.-- ++.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22223333333 34567788888888887753222 244555555544455554 333322 222222
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh-------hHHHHHHHHH---HhcCcHHHHHHHHHHHHHhcCC
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND-------ITFLCAISAC---SHSGLVEEGIHYFTSLKKDYGI 574 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~ 574 (812)
-|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=-+| ....+++.+.++|+...+ +
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---l 395 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---L 395 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---h
Confidence 35668888888888889999999999999985 66632 1222222233 457889999999998874 6
Q ss_pred CC-ChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 575 EP-VMDHYGAMVDLL----GRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 575 ~p-~~~~~~~li~~~----~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
.| ...++.-+--+| .|+-++..|.+++-.+ +.-|..-++...+..-.+.++++...+++++.++..|.+..++.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 66 455555554444 4888999999999776 88888889988888888999999999999999999999999999
Q ss_pred hHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 003531 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLET 712 (812)
Q Consensus 649 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 712 (812)
..+.+-...|+++.|+.+|+.+.+......|..-|-. .--|-.....+..+..+|+.|.+
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka----YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKA----YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH----hhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999999999887544445443310 00232233334555556655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-07 Score=98.49 Aligned_cols=525 Identities=13% Similarity=0.164 Sum_probs=269.8
Q ss_pred HHHHHhhcCCChhHHHHhhccC----CC-CChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCc
Q 003531 77 KLVSLFCKYNSLSDAARVFEPI----PD-KLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDV 151 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 151 (812)
.-+....++|++..-++.|+.. |. .....|...+......|.++-++.+|++.++. .|.. -.--|.-++..
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHHHHhc
Confidence 4455566788888888888753 22 23446888888888888888899999888763 3433 45556667788
Q ss_pred CChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---hHHHHHhccCCC--CCc--chHHHHHHHHHhCC
Q 003531 152 GEIRRGKEIHGQLIVNG------FSLDLFAMTGVVNMYAKCGQI---EEAYKMFDRMPE--RDL--VSWNTIVAGFAQNG 218 (812)
Q Consensus 152 ~~~~~a~~l~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g 218 (812)
+++++|.+.+..++... .+.+-..|+-+-+..++.-+. -....+++.+.. +|. ..|++|..-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 88888888887776331 245566777777766654322 223345555543 333 36888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHh
Q 003531 219 FAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFD 298 (812)
Q Consensus 219 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 298 (812)
.++.|.++|++-... ..+..-|+.+.++|+.-.....+..+- .....+..+. ..-+++-...-|+
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~~a~~e 327 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELHMARFE 327 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHHHHHHH
Confidence 999999999887664 223444666666665433222222111 0111111110 0012222333333
Q ss_pred cCCC---------------CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 003531 299 GMKS---------------RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVH 363 (812)
Q Consensus 299 ~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 363 (812)
.+.. .++..|..-+. +..|+..+-...|.+..+. +.|-..
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka---------------------- 382 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA---------------------- 382 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC----------------------
Confidence 3322 12333333222 1234444444455444432 222111
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc-------ccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 364 KLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTL-------VSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 364 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
...-...|..+.+.|-..|+++.|+.+|++...-+- .+|..-...=.++.+++.|+++.++...
T Consensus 383 -------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~-- 453 (835)
T KOG2047|consen 383 -------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH-- 453 (835)
T ss_pred -------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc--
Confidence 011223566777888888888888888887765432 2455555555667778888887776654
Q ss_pred CCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH--
Q 003531 437 IKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMI-- 514 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li-- 514 (812)
.|.... + .+...+..-+++ + ..+..+|+..++.--..|-++....+++++.+--+.|=..++
T Consensus 454 -vP~~~~----~-~~yd~~~pvQ~r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 454 -VPTNPE----L-EYYDNSEPVQAR-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred -CCCchh----h-hhhcCCCcHHHH-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222211 1 111111111110 1 113344555555555555566666666555532111111111
Q ss_pred -HHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH---HhcCcHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHH
Q 003531 515 -DGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISAC---SHSGLVEEGIHYFTSLKKDYGIEPVM--DHYGAMVDL 587 (812)
Q Consensus 515 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~ 587 (812)
.-+-.|.-++++.++|++-+..--.|+.. .|+..|.-+ .....++.|..+|++..+ |.+|.- ..|-...+.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Confidence 11233445556666665555542223322 333333322 122345566666666553 444421 112111222
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccch--hhHhhhhhhcCCch
Q 003531 588 LGRAGRLNEAWDFIQKM--PIEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYH--VLLANIYAAASMWD 661 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~--~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~ 661 (812)
=-+-|....|+++++++ ..++. ...|+..|.--...=-+.....+|+++++.-|++-.-- .-.+++-.+.|..+
T Consensus 596 EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH
Confidence 22445555566666655 22221 22455444332222113345566777777666543322 23456666777777
Q ss_pred HHHHHHHHHHH
Q 003531 662 KLAKVRTIMEK 672 (812)
Q Consensus 662 ~a~~~~~~m~~ 672 (812)
.|+.++..-.+
T Consensus 676 RARaIya~~sq 686 (835)
T KOG2047|consen 676 RARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHhhhh
Confidence 77777655544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-10 Score=112.92 Aligned_cols=198 Identities=13% Similarity=0.037 Sum_probs=166.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788889999999999999998762 356788889999999999999999999999853 3345677788889
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a 629 (812)
+...|++++|.+.++...+..........+..++..+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998864222224567888899999999999999999887 4455 466888888999999999999
Q ss_pred HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
...++++++..|+++..+..++.++...|++++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-08 Score=103.84 Aligned_cols=459 Identities=14% Similarity=0.090 Sum_probs=288.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHh---ccCChHHH-------------------HHHH----HHHHHhC
Q 003531 216 QNGFAELALDLVTRMHEEGRRGDFITIVSILPAVA---NVGSLRIG-------------------KAVH----GYAMRAG 269 (812)
Q Consensus 216 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~~a-------------------~~~~----~~~~~~g 269 (812)
+.+..++++.-+..-...+..-+..++..+...+. ..++.++. .... .++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666665555555555555444332 22233322 2211 1122234
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhH-HH
Q 003531 270 FDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTI-ME 345 (812)
Q Consensus 270 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ 345 (812)
+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|..++++-......|+..+. ..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 567888999999999999999999999998765 45567999999999999999999999987765434544443 33
Q ss_pred HHHHHh-ccCChHHHHHHHHHHhhc--CC--CCChhHHHHHHHHHHhCC-----------ChHHHHHHHHhcCCC---Cc
Q 003531 346 ALHACA-DLGDLERGIFVHKLLDQL--KL--GTDVSMTNSLISMYSKCK-----------KVDRAADIFSKLQGK---TL 406 (812)
Q Consensus 346 ll~a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~~~~~---~~ 406 (812)
.-..|. +.+.++++...-..++.. +. ......+-.+.-+|...- ...++...+++..+. |+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 333343 457777777776666652 11 122334444444443211 123455556665433 33
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHH
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRS-CFEKNVFVMTALIDM 485 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~ 485 (812)
.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+..... |..... ...-++.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhhhhh
Confidence 3333344457778899999999999988765667777777777788888899998888766542 221100 0001111
Q ss_pred HHhcCCHHHHHHHHHhcC------------------------------C-CCh-HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003531 486 YAKCGAVGTARALFDMMN------------------------------E-RHV-TTWNVMIDGYGTHGLGKAAVELFNKM 533 (812)
Q Consensus 486 y~k~g~~~~A~~~~~~m~------------------------------~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 533 (812)
-.+-++.++|......+. + .|. .++..+..-... +.+.+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-c
Confidence 122344444433322221 0 111 122222111111 1111100000 2
Q ss_pred HhCCCCCCh--------hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 534 LEGPTKPND--------ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 534 ~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
...-+.|.. ..|......+...+..++|...+.+.. ++.| ....|...+..+...|+++||.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 222223322 234456667788899999987776665 4566 6778888889999999999999999887
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCc
Q 003531 605 -PIEPG-ITVFGAMLGACKIHKNVELGEK--AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPG 680 (812)
Q Consensus 605 -~~~pd-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 680 (812)
.+.|| +.+..++...+.+.|+...|.. ++..+++++|.++.++..||.++-+.|+.++|...|....+... ..|-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV 789 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPV 789 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCc
Confidence 77886 4588889999999999998888 99999999999999999999999999999999999999887533 3343
Q ss_pred ccE
Q 003531 681 CSL 683 (812)
Q Consensus 681 ~s~ 683 (812)
.+|
T Consensus 790 ~pF 792 (799)
T KOG4162|consen 790 LPF 792 (799)
T ss_pred ccc
Confidence 444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-08 Score=104.01 Aligned_cols=405 Identities=12% Similarity=0.008 Sum_probs=252.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-cchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHh
Q 003531 209 TIVAGFAQNGFAELALDLVTRMHEEGRRGD-FITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSI-VNVSTALVDMYAK 286 (812)
Q Consensus 209 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~ 286 (812)
....-|.++|.+++|++.|....+ ..|| .+-|.....+|...|+|+...+.-...++. .|+ +-.+..-..++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 344567788888889888888877 4677 555666667777888888877776666554 343 3344555566777
Q ss_pred CCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHH--------HHH-c--CCCCChhhHHHHHHHHhccCC
Q 003531 287 CGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQK--------MLD-Q--GVEPTNVTIMEALHACADLGD 355 (812)
Q Consensus 287 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~-~--g~~p~~~t~~~ll~a~~~~~~ 355 (812)
.|++++|+.= +|-..+..++....-.--+.+++++ -.. . .+.|......+.+..+...-.
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 7777777532 2222333333322222223333322 222 1 123443333333332211000
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhC-CChHHHHHHHHhc-------CCCC---c------ccHHHHHHHHHH
Q 003531 356 LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKC-KKVDRAADIFSKL-------QGKT---L------VSWNAMILGYAQ 418 (812)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~~-------~~~~---~------~~~~~li~~~~~ 418 (812)
..+...+-..|...-..+=..|... ..+..|...+.+- ...+ . .+.+.-..-+.-
T Consensus 267 --------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 --------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred --------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0000000011111111111112111 1233333333221 1111 1 111111222345
Q ss_pred cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003531 419 NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARAL 498 (812)
Q Consensus 419 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 498 (812)
.|+.-.|.+-|+..+.....++.. |.-+-.++....+.++....|..+.+.+ +-++.+|..-.+++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 688899999999998865444432 6677778899999999999999998866 33566777778888888999999999
Q ss_pred HHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC
Q 003531 499 FDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575 (812)
Q Consensus 499 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 575 (812)
|++... .++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+..+++++.|.+.|+..+. +.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE 492 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LE 492 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hc
Confidence 998874 35667777777777888999999999999984 444467899999999999999999999998874 44
Q ss_pred CC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 003531 576 PV---------MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 576 p~---------~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
|+ +.+..+++-.-.+ +++.+|.++++++ .+.|. ...+-+|...-.+.|+.++|+++|++...+--
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43 1122222222223 8999999999998 77774 45888899999999999999999999876543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-07 Score=99.75 Aligned_cols=457 Identities=17% Similarity=0.208 Sum_probs=266.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHH----HHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHH
Q 003531 176 MTGVVNMYAKCGQIEEAYKMFDRMPE--RDLVSWNTI----VAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAV 249 (812)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 249 (812)
+..+.+.+.+.|-...|++.+..+.. +.++.-+.+ +-.|.-.-.++++++.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55666778888888888888877763 222211111 234555567888999999999888887777666665555
Q ss_pred hccCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCC----------------
Q 003531 250 ANVGSLRIGKAVHGYAMR-----------AGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS---------------- 302 (812)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------- 302 (812)
...--.+.-.++|+.... .++..|..+.-..|.+-++.|++.+.+++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 443333333444433221 13455666667889999999999998887654321
Q ss_pred ---------------CCchhH------HHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh-------------HHHHHH
Q 003531 303 ---------------RNVVSW------NSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT-------------IMEALH 348 (812)
Q Consensus 303 ---------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------------~~~ll~ 348 (812)
+|.+.| --.|..|.+.=++...-.+...+++- .-+... ...+..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCChHHHHH
Confidence 122221 11344454443333322222222211 111111 112223
Q ss_pred HHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHH-----------------------------------
Q 003531 349 ACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDR----------------------------------- 393 (812)
Q Consensus 349 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----------------------------------- 393 (812)
-+.+.+++..-...++..+..|.. |+.++|+|...|...++-.+
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 334444444455555555566633 66677777666653332111
Q ss_pred -----------------------------HHHHHH-----------hcC------CCCcccHHHHHHHHHHcCChHHHHH
Q 003531 394 -----------------------------AADIFS-----------KLQ------GKTLVSWNAMILGYAQNGRVNEALN 427 (812)
Q Consensus 394 -----------------------------A~~~f~-----------~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 427 (812)
-.+++. ++. ..|+..-+.-+.++...+-..+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 111110 000 0122233344556666667777777
Q ss_pred HHHHHhhCCCCCCccc----HHhH-HHH---------------------------HhccccHHHHHHHHHHHHHhCCCCc
Q 003531 428 YFCKMRSKNIKPDSFT----MVSV-IPA---------------------------LAELSVIRYAKWIHALVIRSCFEKN 475 (812)
Q Consensus 428 ~~~~m~~~g~~p~~~t----~~~l-l~a---------------------------~~~~~~~~~a~~i~~~~~~~~~~~~ 475 (812)
+++++.-. |+.++ ...+ +-. +...+-.++|..+|.. +..+
T Consensus 1006 LLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~n 1077 (1666)
T KOG0985|consen 1006 LLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDMN 1077 (1666)
T ss_pred HHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hccc
Confidence 77776532 21111 1111 111 1111122222222221 1222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS 555 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 555 (812)
....+.||+ .-+.++.|.++-++..+ ...|..+..+-.+.|...+|++-|-+. .|+..|.-++.++++.
T Consensus 1078 ~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1078 VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 222222322 23445555555555443 457999999999999999999887543 3577899999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 556 GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 556 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
|.+++-..++.-..++ .-+|.++ +.|+-+|++.+++.|-++++. .|+..-....+.-|...|.++.|.-+|.
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~- 1218 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS- 1218 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH-
Confidence 9999999988655544 5666544 569999999999999988884 5788888899999999999999998886
Q ss_pred HhccCCCCccchhhHhhhhhhcCCchHHHHHHHH
Q 003531 636 LFELDPDEGGYHVLLANIYAAASMWDKLAKVRTI 669 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 669 (812)
+...|..|+..+...|.++.|...-++
T Consensus 1219 -------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 -------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677788888888888877654433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-08 Score=103.30 Aligned_cols=270 Identities=16% Similarity=0.138 Sum_probs=155.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 003531 307 SWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYS 386 (812)
Q Consensus 307 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 386 (812)
..-.-..-+...+++.+..+++++..+.. ++....+..=|..+...|+...-..+-..+++. .+....+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 33334444555666666666666665541 223333333333444445444443333333333 2335566777777777
Q ss_pred hCCChHHHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHH
Q 003531 387 KCKKVDRAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKW 462 (812)
Q Consensus 387 ~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~ 462 (812)
-.|+..+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+. -|. ..-+..+--
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgm------------- 388 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGM------------- 388 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHH-------------
Confidence 77888888888877654433 57888888888888888888877665442 111 111111111
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhC--C
Q 003531 463 IHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEG--P 537 (812)
Q Consensus 463 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g 537 (812)
-|.+.++++-|.++|.+.. ..|+...+-+.-..-+.+.+.+|..+|+..+.. .
T Consensus 389 ----------------------ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 389 ----------------------EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred ----------------------HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 2444455555555555443 234445555554445556666666666655520 0
Q ss_pred C---CC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003531 538 T---KP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 538 ~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~ 611 (812)
+ ++ -..+++.|..+|.+.+.+++|+..|+.... ..| +..++.+++..|...|+++.|.+.|.+. .+.||..
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 0 11 234566777777777777777777777663 344 6777777777777777777777777776 6677766
Q ss_pred HHHHHHH
Q 003531 612 VFGAMLG 618 (812)
Q Consensus 612 ~~~~ll~ 618 (812)
+...+++
T Consensus 524 ~~~~lL~ 530 (611)
T KOG1173|consen 524 FISELLK 530 (611)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-08 Score=101.82 Aligned_cols=286 Identities=13% Similarity=0.117 Sum_probs=188.8
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 003531 318 GGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADI 397 (812)
Q Consensus 318 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (812)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+....+.+..-+++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766554333 2345555566667777777777777777765566667777777888888888888877
Q ss_pred HHhcC---CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 003531 398 FSKLQ---GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK 474 (812)
Q Consensus 398 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 474 (812)
.+++. .+++.........|.+.|++.+.+.++..|.+.|+--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 76544 45677888888999999999999999999998876444221 111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
...+|+.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 11234444444443344444444555555 34455666677777788888888888888887776666 222335
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~ 630 (812)
+.+-++...-++..+.-.+.++..| ..+.+|+..|.+.+.+.+|.+.|+.. +..|+...|+-+..++-+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5666666666666666555544444 56666777777777777777777665 66677777777777777777777777
Q ss_pred HHHHHHhc
Q 003531 631 KAANRLFE 638 (812)
Q Consensus 631 ~~~~~~~~ 638 (812)
...++.+-
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 77776653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-09 Score=99.32 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=174.4
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCC-CC--ChhHHHHHHHHHHhCCChH
Q 003531 317 EGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKL-GT--DVSMTNSLISMYSKCKKVD 392 (812)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~--~~~~~~~Li~~y~~~g~~~ 392 (812)
-++++++|.++|-+|.+. .|. ..+-.++-+.+.+.|..+.|+++|..+.++.- .. -......|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 357888999999999873 222 22344566677888888999999888876531 11 1233455677788899999
Q ss_pred HHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHH
Q 003531 393 RAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIR 469 (812)
Q Consensus 393 ~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 469 (812)
.|+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.+-.+..+-..
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------ 180 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------ 180 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------
Confidence 99999988877544 345667888888899999998888887765444322111
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH
Q 003531 470 SCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH---VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL 546 (812)
Q Consensus 470 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 546 (812)
..|.-|...+.-..+++.|..++.+..+-| +..=-.+...+...|++++|++.++...+++..--..+..
T Consensus 181 -------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 181 -------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 112333444444556666666666665322 2222334455667777777777777777643222234556
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh---
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFI-QKMPIEPGITVFGAMLGACKI--- 622 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~-~~~~~~pd~~~~~~ll~~~~~--- 622 (812)
.|..+|.+.|+.+++..++..+.+. .+....-..|.+......-.++|...+ +...-+|+...+.-|+..-..
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence 6667777777777777777776643 344444444555444444445555444 334556777776666665432
Q ss_pred cCCHHHHHHHHHHHh
Q 003531 623 HKNVELGEKAANRLF 637 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~ 637 (812)
-|...+....++.++
T Consensus 331 eg~~k~sL~~lr~mv 345 (389)
T COG2956 331 EGRAKESLDLLRDMV 345 (389)
T ss_pred ccchhhhHHHHHHHH
Confidence 233444445555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-11 Score=87.33 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhc
Q 003531 202 RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN 251 (812)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 251 (812)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-07 Score=100.54 Aligned_cols=440 Identities=12% Similarity=0.063 Sum_probs=261.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchH-H
Q 003531 168 GFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITI-V 243 (812)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ 243 (812)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-......|+..+- .
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567899999999999999999999999998653 34457999999999999999999999887655434544443 3
Q ss_pred hHHHHHh-ccCChHHHHHHHHHHHHhC--CC--CchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhC
Q 003531 244 SILPAVA-NVGSLRIGKAVHGYAMRAG--FD--SIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEG 318 (812)
Q Consensus 244 ~ll~a~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 318 (812)
..-+.|. +.+..++|...-..++... .. .....+-.+.-+|...- ....++.- +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HH
Confidence 3334443 3445555555555544411 00 01111111222221100 00000000 11
Q ss_pred CChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 003531 319 GNPEEAMRIFQKMLDQGV-EPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADI 397 (812)
Q Consensus 319 g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (812)
....++++.+++.++.+. .|+..-|.++ -++-.++++.|.+......+.+-..+...|..|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 123466667776665432 3433333333 2445567777777777777776667777777777777777888888877
Q ss_pred HHhcCCCCcccHH---HHHHHHHHcCChHHHHHHHHHHhhC--CCCCCcccHHhHHHHHhccccHHHHHHHHHHHH--Hh
Q 003531 398 FSKLQGKTLVSWN---AMILGYAQNGRVNEALNYFCKMRSK--NIKPDSFTMVSVIPALAELSVIRYAKWIHALVI--RS 470 (812)
Q Consensus 398 f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~ 470 (812)
.+...+.-...++ .-|..-..-++.++|+.....+..- ...|-..+ ++-....+....+. ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcc
Confidence 7655432111111 1122222345666666665555431 00000000 00000000000000 00
Q ss_pred CCCCchhHHHHH---HHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-
Q 003531 471 CFEKNVFVMTAL---IDMYAKCGAVGTARALFDMMNERH------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP- 540 (812)
Q Consensus 471 ~~~~~~~~~~~l---i~~y~k~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 540 (812)
.....+.++..+ +..=.+.-..+..+..+...+.|+ ...|......+...++.++|...+.+... +.|
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l 682 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPL 682 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchh
Confidence 001111222222 221111111122222222222333 23577777888899999999988888876 444
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHH
Q 003531 541 NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWD--FIQKM-PIEP-GITVFGA 615 (812)
Q Consensus 541 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~--~~~~~-~~~p-d~~~~~~ 615 (812)
....|......+...|.+++|.+.|.... -++| ++....+++.++.+.|+-.-|.. ++..+ .+.| +...|..
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 35566666677888999999999998776 5788 68889999999999996655555 88777 6777 6779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
|+..+.+.|+.+.|...|.-++++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999987764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-11 Score=86.18 Aligned_cols=50 Identities=30% Similarity=0.475 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH 554 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 554 (812)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-07 Score=97.90 Aligned_cols=430 Identities=14% Similarity=0.143 Sum_probs=241.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHH--HhC
Q 003531 212 AGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTA--LVDMY--AKC 287 (812)
Q Consensus 212 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y--~~~ 287 (812)
.-+.++|++++|+....++...+ +-|...+..=+-++.+.+.++.|..+... .+. ..+++. +=.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 33445555666666666555543 22223344444444555555555533221 111 011111 12333 367
Q ss_pred CChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHH
Q 003531 288 GRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNV-TIMEALHACADLGDLERGIFVHKLL 366 (812)
Q Consensus 288 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~ 366 (812)
+..++|...++.....+..+-..-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-... .+ ..+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HHH
Confidence 889999999886655555566666778889999999999999997765432211 222222221111 01 011
Q ss_pred hhcCCCCChhHHHH---HHHHHHhCCChHHHHHHHHhc--------CCCCc-----c-----cHHHHHHHHHHcCChHHH
Q 003531 367 DQLKLGTDVSMTNS---LISMYSKCKKVDRAADIFSKL--------QGKTL-----V-----SWNAMILGYAQNGRVNEA 425 (812)
Q Consensus 367 ~~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~~--------~~~~~-----~-----~~~~li~~~~~~g~~~~A 425 (812)
......| ..+|.. ..-.+...|++.+|+++++.. ...|. . .---|.-.+...|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 1222222 222322 234567789999999999876 11111 1 122344567788999999
Q ss_pred HHHHHHHhhCCCCCCcccHHhHHH---HHhccccHHH--HHHHH-----------HHHHHhCCCCchhHHHHHHHHHHhc
Q 003531 426 LNYFCKMRSKNIKPDSFTMVSVIP---ALAELSVIRY--AKWIH-----------ALVIRSCFEKNVFVMTALIDMYAKC 489 (812)
Q Consensus 426 ~~~~~~m~~~g~~p~~~t~~~ll~---a~~~~~~~~~--a~~i~-----------~~~~~~~~~~~~~~~~~li~~y~k~ 489 (812)
.+++...+... .+|........+ +...-.++-. ....+ .......-...+..-++++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999998864 344432222211 1111111111 01111 01111111112333355666665
Q ss_pred CCHHHHHHHHHhcCCCC-hHHHHHHHH-HHH-hCCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCcHHHHHHH
Q 003531 490 GAVGTARALFDMMNERH-VTTWNVMID-GYG-THGLGKAAVELFNKMLEGPTKPND--ITFLCAISACSHSGLVEEGIHY 564 (812)
Q Consensus 490 g~~~~A~~~~~~m~~~~-~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 564 (812)
+..+.+.++....+... ...+.+++. ++. +...+.+|.+++...-+. .|.. +.....+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56677888877777422 233444443 332 233577888888877663 3443 3445556667889999999999
Q ss_pred HH--------HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHH
Q 003531 565 FT--------SLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--------PIEPG-ITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 565 ~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~pd-~~~~~~ll~~~~~~g~~~ 627 (812)
+. .+.+. +.. +.+..+++.++.+.+.-+-|..++.++ .-.+. ..+|.-+...-.++|+.+
T Consensus 399 l~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 44422 333 456677888999888766666665554 21222 224444444456789999
Q ss_pred HHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHH
Q 003531 628 LGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKV 666 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 666 (812)
+|...++++++.+|++....+.+..+|+... .+.|..+
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 9999999999999999999999998887653 3444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-09 Score=119.56 Aligned_cols=242 Identities=12% Similarity=0.010 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHhhCCCCCCcc-cHHhHHHHHh---------ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003531 422 VNEALNYFCKMRSKNIKPDSF-TMVSVIPALA---------ELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491 (812)
Q Consensus 422 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 491 (812)
.++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45666677666653 34432 2222222221 2244677777777777764 3466778888888999999
Q ss_pred HHHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHH
Q 003531 492 VGTARALFDMMN--ER-HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTS 567 (812)
Q Consensus 492 ~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 567 (812)
+++|...|++.. .| +...|..+...|...|++++|+..+++.++ ..|+.. .+..++.++...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999877 34 466888899999999999999999999999 567643 334445567778999999999998
Q ss_pred HHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 568 LKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI-TVFGAMLGACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 568 m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
+.+. ..| +...+..+..+|...|++++|...++++ +..|+. ..++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8754 235 4566788899999999999999999987 555654 45566666677777 478888888776443333
Q ss_pred cchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 645 GYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.....+..+|+-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3334478888899999988887 666654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-08 Score=94.92 Aligned_cols=317 Identities=16% Similarity=0.128 Sum_probs=170.5
Q ss_pred CCChHHHHHHHhcCCC--CCchhHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CChHHHHH
Q 003531 287 CGRVETARLVFDGMKS--RNVVSWNSM-IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL--GDLERGIF 361 (812)
Q Consensus 287 ~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~ 361 (812)
.-.+++|.+++.++.. |+-...|.- .-.|.+..-++-+.+++.--++. -||+ |+..-+.+|..- =+-..+.+
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHH
Confidence 3456778888777664 444455543 34566777777777777766654 3443 333334444322 11122222
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhC-----CChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 362 VHKLLDQLKLGTDVSMTNSLISMYSKC-----KKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 362 i~~~~~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
-.+.+.+.+-..- ..+.-.++. ..-+.|.+++-.+...=+.+--.++--|.++++..+|..+.+++.-
T Consensus 241 E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P-- 313 (557)
T KOG3785|consen 241 EKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP-- 313 (557)
T ss_pred HHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--
Confidence 2222222221110 111112221 2234555555443332223333455567888999999888877642
Q ss_pred CCCCcccHHhHHHHH-----hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH
Q 003531 437 IKPDSFTMVSVIPAL-----AELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWN 511 (812)
Q Consensus 437 ~~p~~~t~~~ll~a~-----~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~ 511 (812)
..|-.+..-.+..+. .....+..|.+.++.+-.++..-|.. .--.
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI------------------------------pGRQ 363 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI------------------------------PGRQ 363 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc------------------------------cchH
Confidence 233333332222221 11122333444444444333332221 1223
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHhh
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYG-AMVDLLGR 590 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~ 590 (812)
+|.+.+.-..++++.+..++....- +.-|...-..+..|.+..|.+.+|+++|-.+... .++ +..+|. .|...|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHh
Confidence 3344444444555555555555443 2223333334677888888888888888766521 222 344444 45678889
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhccCCCCccch
Q 003531 591 AGRLNEAWDFIQKMPIEPGITVFGAML-GACKIHKNVELGEKAANRLFELDPDEGGYH 647 (812)
Q Consensus 591 ~g~~~eA~~~~~~~~~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 647 (812)
+|+.+-|++++-++....+..+...++ +-|.+.+.+--|-++|..+-.++|. ++.+
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 999999999998886444666555555 4599999999999999999999994 5543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-07 Score=93.56 Aligned_cols=365 Identities=13% Similarity=0.061 Sum_probs=235.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCCC-CchhHHHHHHHHHhCC-ChhHH--------------HHHHHHHHHcC--
Q 003531 274 VNVSTALVDMYAKCGRVETARLVFDGMKSR-NVVSWNSMIAAYVEGG-NPEEA--------------MRIFQKMLDQG-- 335 (812)
Q Consensus 274 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g-~~~~A--------------~~l~~~m~~~g-- 335 (812)
...-.-.+..|...++-++|.....+.+.. ...--|.|+.-+.+.| +..++ ++.+.-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 333445566677777788888887777753 3333444444333332 11121 12222222222
Q ss_pred -------------CCCChhhHHHHHHHH--hccCChHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 003531 336 -------------VEPTNVTIMEALHAC--ADLGDLERGIFVHKLLDQL-KLGTDVSMTNSLISMYSKCKKVDRAADIFS 399 (812)
Q Consensus 336 -------------~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 399 (812)
+.|...+....+.++ +..++...+.+.+..+.+. -++.|+....++.+.|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 223333444444443 3345555555555444433 467788889999999999999999999999
Q ss_pred hcCCCCcccHHHH---HHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 003531 400 KLQGKTLVSWNAM---ILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNV 476 (812)
Q Consensus 400 ~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 476 (812)
+...-|+.+...| .-.+.+.|+.++...+...+.... +-....|..-+.......+.+.|..+-+..++... .++
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccc
Confidence 8876666544333 334567888888877777765531 11112222223333455677777777776666542 233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHH-HHH
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMN--E-RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAI-SAC 552 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~ 552 (812)
..+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|++.+|.-+-+...+. +.-+..+...+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 333333455667789999998888765 3 47789999999999999999998888777663 334455555442 233
Q ss_pred H-hcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003531 553 S-HSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 553 ~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a 629 (812)
. ....-++|..++++-. .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|+..++..+.+.+|
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 2333577888887765 46774 566777888888999999999999887 6678988889999999999999999
Q ss_pred HHHHHHHhccCCCCc
Q 003531 630 EKAANRLFELDPDEG 644 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~ 644 (812)
...|..++.++|++.
T Consensus 491 m~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHhcCccch
Confidence 999999999999764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-06 Score=89.86 Aligned_cols=446 Identities=13% Similarity=0.162 Sum_probs=261.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHH
Q 003531 173 LFAMTGVVNMYAKCGQIEEAYKMFDRMPE-----RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILP 247 (812)
Q Consensus 173 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 247 (812)
+.+|-..+....+.|++...+..|+.... .....|...|.-....|-++-++.+|++.++- .|.. -..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 45777788888899999999999987543 34457998898888899999999999999874 3433 555677
Q ss_pred HHhccCChHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhCCChH---HHHHHHhcCCC--CCc--hhHHHHHHH
Q 003531 248 AVANVGSLRIGKAVHGYAMRA------GFDSIVNVSTALVDMYAKCGRVE---TARLVFDGMKS--RNV--VSWNSMIAA 314 (812)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~m~~--~~~--~~~~~li~~ 314 (812)
.++..+++++|.+.+..++.. ..+.+...|.-+-+..++.-+.- ....+++.+.. +|. ..|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 788899999999988887643 12455667777777776654332 34455555554 333 469999999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHH
Q 003531 315 YVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRA 394 (812)
Q Consensus 315 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 394 (812)
|.+.|.+++|.++|++.+.. ..+..-|+.+.++|+.-.....+..+- .....+..+. -.-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 99999999999999998765 334445666666665433222221111 0101111110 00112233
Q ss_pred HHHHHhcCCC---------------CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHH
Q 003531 395 ADIFSKLQGK---------------TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRY 459 (812)
Q Consensus 395 ~~~f~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 459 (812)
..-|+.+..+ ++..|..-+. +..|+..+-...|.+..+. +.|-...
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~---------------- 383 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAV---------------- 383 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCC----------------
Confidence 3334433322 2233432222 2345566666666666553 3332111
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h----HHHHHHHHHHHhCCCHHHHHHHHHH
Q 003531 460 AKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH---V----TTWNVMIDGYGTHGLGKAAVELFNK 532 (812)
Q Consensus 460 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~----~~~~~li~~~~~~g~~~~A~~~~~~ 532 (812)
..-...|..+.+.|-..|+++.|..+|++..+-+ + ..|-.-...-.++.+++.|+++.++
T Consensus 384 -------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 384 -------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred -------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 0112234555556666666666666666555321 1 2343334444455566666666555
Q ss_pred HHhCCCC----------C-------ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH
Q 003531 533 MLEGPTK----------P-------NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLN 595 (812)
Q Consensus 533 m~~~g~~----------p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 595 (812)
.....-. | +...|...+..-...|-++....+|+++..-.-..|.+ .-...-.+-...-++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFE 528 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHH
Confidence 5431101 1 12234445555556677777777888777543334432 222223344566788
Q ss_pred HHHHHHHhC-C-C-CCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCC-c-cchhhHhhhhhhcCCchHHHHH
Q 003531 596 EAWDFIQKM-P-I-EPGIT-VFGAMLGACKI---HKNVELGEKAANRLFELDPDE-G-GYHVLLANIYAAASMWDKLAKV 666 (812)
Q Consensus 596 eA~~~~~~~-~-~-~pd~~-~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~-~-~~~~~l~~~~~~~g~~~~a~~~ 666 (812)
+|.+.+++- + + -|++. +|++.+.-+.+ ...+|.|..+|+++++.-|.. . .+|.+.+..--+-|.-..|..+
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888876 3 2 24443 88888876543 237888999999998877622 2 2344445444555777777777
Q ss_pred HHHHH
Q 003531 667 RTIME 671 (812)
Q Consensus 667 ~~~m~ 671 (812)
++++.
T Consensus 609 yerat 613 (835)
T KOG2047|consen 609 YERAT 613 (835)
T ss_pred HHHHH
Confidence 77654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-08 Score=97.10 Aligned_cols=289 Identities=12% Similarity=0.061 Sum_probs=186.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 003531 217 NGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLV 296 (812)
Q Consensus 217 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 296 (812)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-++...+.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777655554333 2335555566667777777777777777665566677777777778888888888776
Q ss_pred HhcCC---CCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCC
Q 003531 297 FDGMK---SRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGT 373 (812)
Q Consensus 297 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 373 (812)
.+.+. .++.........+|.+.|++.+...++.+|.+.|.--|+..- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 66554 367788888889999999999999999999888765443210 00
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHH
Q 003531 374 DVSMTNSLISMYSKCKKVDRAADIFSKLQG---KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPA 450 (812)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 450 (812)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+- ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 111233333333333333333344454443 24555666777788888888888888888877766661 12223
Q ss_pred HhccccHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHH
Q 003531 451 LAELSVIRYAKWIHALVIR-SCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--ERHVTTWNVMIDGYGTHGLGKAAV 527 (812)
Q Consensus 451 ~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 527 (812)
+.+.++.+.-.+..+...+ .+- ++..+.+|...|.|.+.+.+|.+.|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455555554444444333 333 33667777777888888888888887655 467777777777777777777777
Q ss_pred HHHHHHHhCCCCC
Q 003531 528 ELFNKMLEGPTKP 540 (812)
Q Consensus 528 ~~~~~m~~~g~~p 540 (812)
+.+++.+..-..|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 7777766433333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-09 Score=110.39 Aligned_cols=230 Identities=17% Similarity=0.135 Sum_probs=167.8
Q ss_pred ccHHhHHHHHhccccHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC
Q 003531 442 FTMVSVIPALAELSVIRYAKWIHALVIRS-----CF-EKNV-FVMTALIDMYAKCGAVGTARALFDMMNE--------RH 506 (812)
Q Consensus 442 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~m~~--------~~ 506 (812)
.|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445566666666777766666665543 21 1121 2234566788889999999988887762 12
Q ss_pred ---hHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC--C
Q 003531 507 ---VTTWNVMIDGYGTHGLGKAAVELFNKMLE-----GPTKPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYG--I 574 (812)
Q Consensus 507 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 574 (812)
..+++.|...|...|++++|...+++..+ .|..+.. .-++.+...|...+.+++|..++....+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 34777888889999999988888877654 2222222 2467778889999999999999987765543 2
Q ss_pred CC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc--
Q 003531 575 EP----VMDHYGAMVDLLGRAGRLNEAWDFIQKM---------PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFE-- 638 (812)
Q Consensus 575 ~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 638 (812)
.+ -..+++.|...|...|+++||.++++++ ...+. ...++.|..+|.+.++++.|.++|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2578999999999999999999999887 11232 44677888999999999999999998765
Q ss_pred --cCCCCc---cchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 639 --LDPDEG---GYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 639 --~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
..|+++ .+|..|+.+|...|++++|.++-....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345554 468899999999999999999987775
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-09 Score=96.84 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVD 586 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 586 (812)
+...|.-+|.+.|+...|..-+++.++ ..|+ ..++..+...|.+.|..+.|.+.|+... .+.| +..+.|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 455677889999999999999999999 6676 5589999999999999999999999887 4677 7889999999
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchH
Q 003531 587 LLGRAGRLNEAWDFIQKMPIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDK 662 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 662 (812)
-+|..|++++|...|+++-..|+ ..+|..++....+.|+.+.|+..+++.++++|+.+.....++....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999833332 45888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 003531 663 LAKVRTIMEKKGL 675 (812)
Q Consensus 663 a~~~~~~m~~~g~ 675 (812)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-06 Score=88.45 Aligned_cols=505 Identities=15% Similarity=0.135 Sum_probs=252.5
Q ss_pred cCCChhHHHHhhccCCC-CC-hhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHH
Q 003531 84 KYNSLSDAARVFEPIPD-KL-DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIH 161 (812)
Q Consensus 84 ~~g~~~~A~~~f~~~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~ 161 (812)
..|+++.|...++.... |+ ...|-.+...-...|++.-|.+.| +..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHH
Confidence 34566666666654332 22 223544444444444444443333 3345566666666
Q ss_pred HHHH-------HhC-CCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003531 162 GQLI-------VNG-FSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEE 233 (812)
Q Consensus 162 ~~~~-------~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 233 (812)
+... +.| -..+.+-..+++.+.. .++.+|..+|-+-. . -..-|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn---~--te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN---A--TEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc---c--HHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 5443 112 2233444445554443 45777887775321 1 123455666666777777664422
Q ss_pred CCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC--CCCchhHHHH
Q 003531 234 GRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMK--SRNVVSWNSM 311 (812)
Q Consensus 234 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~l 311 (812)
|.+.-...-.+-++++...|+-+.|-++ ..+..-..+-|..|.|.|..-.|.+.-..=. ..|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 2111111223445556666655554433 1112223456788889888887776543221 2455555556
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhH-HHHHHHHHHhCCC
Q 003531 312 IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSM-TNSLISMYSKCKK 390 (812)
Q Consensus 312 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~~~g~ 390 (812)
..++.+..-+++|-++|+++.. +...+..+.+...+..|.++-.... +..++. -.+-..-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHh
Confidence 6666666667777777766642 1122222322223333333322211 111110 0111122233444
Q ss_pred hHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHh
Q 003531 391 VDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRS 470 (812)
Q Consensus 391 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 470 (812)
++.|...|-+... .---|.+-.....+.+|+.+++.++.+.. -..-|..+..-|+..|+++.|.++|...
T Consensus 722 ~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 4444444432110 01112333444555555555555544321 1223344444555555555555554322
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hHHHHHH--------------------------HHHHHhCCC
Q 003531 471 CFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH--VTTWNVM--------------------------IDGYGTHGL 522 (812)
Q Consensus 471 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~--~~~~~~l--------------------------i~~~~~~g~ 522 (812)
..++--|+||.+.|++++|.++-++...|. +.+|-+- |..|-++|.
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~ 865 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGL 865 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCc
Confidence 123334555555555555555555444332 2233333 334444444
Q ss_pred HHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 003531 523 GKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDF 600 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 600 (812)
.++.+++.++ ..|+ ..|...+..-+...|++.+|...|-+.. -|.+-+++|-..+.+++|.++
T Consensus 866 ~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 866 DDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred chHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHH
Confidence 4444444332 2344 3466667777788888888887665433 366778889899999999988
Q ss_pred HHhCCCC-C---CHHHHHHHH------HHHHhcCCHHHHHHHHH------HHhc-----cCCCCccchhhHhhhhhhcCC
Q 003531 601 IQKMPIE-P---GITVFGAML------GACKIHKNVELGEKAAN------RLFE-----LDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 601 ~~~~~~~-p---d~~~~~~ll------~~~~~~g~~~~a~~~~~------~~~~-----~~p~~~~~~~~l~~~~~~~g~ 659 (812)
-+.-+-. . -...|.--+ ....+||-++.|+..+- -+++ .....++.+..++..+-..|+
T Consensus 931 aktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk 1010 (1636)
T KOG3616|consen 931 AKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGK 1010 (1636)
T ss_pred HhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccc
Confidence 7665311 1 122342222 22345666665554322 2222 122346678888888999999
Q ss_pred chHHHHHHHHHHHc
Q 003531 660 WDKLAKVRTIMEKK 673 (812)
Q Consensus 660 ~~~a~~~~~~m~~~ 673 (812)
+++|.+-+-...+.
T Consensus 1011 ~edaskhyveaikl 1024 (1636)
T KOG3616|consen 1011 FEDASKHYVEAIKL 1024 (1636)
T ss_pred hhhhhHhhHHHhhc
Confidence 99998888777665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-08 Score=115.73 Aligned_cols=211 Identities=12% Similarity=-0.009 Sum_probs=163.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCC
Q 003531 455 SVIRYAKWIHALVIRSCFEKNVFVMTALIDMYA---------KCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGL 522 (812)
Q Consensus 455 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 522 (812)
+++++|...++..++... .+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 356788888888887642 23455655655544 23458899999998873 467788889889999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 003531 523 GKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDF 600 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~ 600 (812)
+++|+..|+++++ ..|+ ...+..+..++...|++++|...+++..+ +.|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5676 55778888899999999999999999884 4664 33344455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 601 IQKM--PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 601 ~~~~--~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
++++ ...|+ +..+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22354 4556777777889999999999999999899988888888888888888 5788877776653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-05 Score=84.05 Aligned_cols=572 Identities=13% Similarity=0.141 Sum_probs=316.0
Q ss_pred HHHHHhhcCCChhHHHHhhccCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCC
Q 003531 77 KLVSLFCKYNSLSDAARVFEPIPD---KLDALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGE 153 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 153 (812)
.-.+.+...|++++|-++-...|+ ++..+-+.+=+.=...|...--+..|..+...| +.|..-=.-+.+.-...|+
T Consensus 365 ~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~R 443 (1666)
T KOG0985|consen 365 RRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGR 443 (1666)
T ss_pred HHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhH
Confidence 444556678999999999888877 566666666666667788888888888888887 4454433344444445555
Q ss_pred hHHHHHHHHHH-----HHhCCC---CC----hh------HHHHHHHHHHhcCChhHHHHHhccCC-CCCcchHHHHHHHH
Q 003531 154 IRRGKEIHGQL-----IVNGFS---LD----LF------AMTGVVNMYAKCGQIEEAYKMFDRMP-ERDLVSWNTIVAGF 214 (812)
Q Consensus 154 ~~~a~~l~~~~-----~~~g~~---~~----~~------~~~~Li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~ 214 (812)
.+.....+.+= .+.|-- .| .. +-+..+.+|+.+|+++.+.-...+.- .|| |-.+|...
T Consensus 444 kqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l 520 (1666)
T KOG0985|consen 444 KQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQL 520 (1666)
T ss_pred HHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHH
Confidence 54444433221 122311 11 01 11334455555555555554443332 133 45566666
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhc----------------cCChHHH---HHHHHHHHHhCCC----
Q 003531 215 AQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN----------------VGSLRIG---KAVHGYAMRAGFD---- 271 (812)
Q Consensus 215 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----------------~~~~~~a---~~~~~~~~~~g~~---- 271 (812)
.+ -.++.+.++...|.+... ....+..+.+.+-. ....+.+ .++++.-...+..
T Consensus 521 ~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADA 597 (1666)
T KOG0985|consen 521 KR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADA 597 (1666)
T ss_pred Hc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHH
Confidence 65 577888888777776322 11222222222222 2222222 1222221111110
Q ss_pred ------CchhHHHHHHHHHHhCCChHHHHHHHhcCCC-CCchhHHHH-----HHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003531 272 ------SIVNVSTALVDMYAKCGRVETARLVFDGMKS-RNVVSWNSM-----IAAYVEGGNPEEAMRIFQKMLDQGVEPT 339 (812)
Q Consensus 272 ------~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 339 (812)
-...-+..+...|.|.|-...|.+.+..+.+ +-++..+.+ +-.|.-.-.++.+++.++.|+..+++-|
T Consensus 598 ILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqN 677 (1666)
T KOG0985|consen 598 ILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQN 677 (1666)
T ss_pred HHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 1111245666778889999999988888765 222222222 2345555678899999999999888888
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhc-----------CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC-----
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQL-----------KLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG----- 403 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----- 403 (812)
..+...+..-|...-..+...++|+..... ++..|+.+.--.|.+-++.|++.+.+++-++-.-
T Consensus 678 lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpEr 757 (1666)
T KOG0985|consen 678 LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPER 757 (1666)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHH
Confidence 777766666555554445555555544322 3556777777789999999999988887654321
Q ss_pred ----------C----------------CcccH------HHHHHHHHHcCChHHHHHHHHHHhhCCCC-----------CC
Q 003531 404 ----------K----------------TLVSW------NAMILGYAQNGRVNEALNYFCKMRSKNIK-----------PD 440 (812)
Q Consensus 404 ----------~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~ 440 (812)
. |.+.| --.|..|.+.=++.+.-.+...+.+-.+. -.
T Consensus 758 vKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~g 837 (1666)
T KOG0985|consen 758 VKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRG 837 (1666)
T ss_pred HHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhc
Confidence 0 11111 12344454443332222222222111100 01
Q ss_pred cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH--------------------------
Q 003531 441 SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGT-------------------------- 494 (812)
Q Consensus 441 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~-------------------------- 494 (812)
.+...-+..-+.+.+++..-...++..+..|. .|+.++|+|...|..+.+-.+
T Consensus 838 q~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 838 QFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred cCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceE
Confidence 11122233344445555555555666666663 466677777766554332111
Q ss_pred --------------------------HHHHHHhc--------C---------------------CCChHHHHHHHHHHHh
Q 003531 495 --------------------------ARALFDMM--------N---------------------ERHVTTWNVMIDGYGT 519 (812)
Q Consensus 495 --------------------------A~~~~~~m--------~---------------------~~~~~~~~~li~~~~~ 519 (812)
|+-+.+++ . ..|+.-...-+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 00000000 0 0122233344556666
Q ss_pred CCCHHHHHHHHHHHHhCCCCC--ChhH------------------HH---------HHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTKP--NDIT------------------FL---------CAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p--~~~t------------------~~---------~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
.+-+.+-++++++.+-..-.- +... |. -+...+...+.++||..+|++.
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-- 1074 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-- 1074 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh--
Confidence 666677777777665321000 0000 00 0122334455566666666532
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhH
Q 003531 571 DYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 571 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
.-+....+.|++ .-|.++.|.++-++.. .+.+|..+..|-.+.|.+.+|+.-|-+ .|||+.|...
T Consensus 1075 ----~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eV 1139 (1666)
T KOG0985|consen 1075 ----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEV 1139 (1666)
T ss_pred ----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHH
Confidence 223333333433 4567777777777663 567899999999999999999988754 4688999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHc
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++..+.|.|++-.++....+++
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999988777765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-08 Score=94.13 Aligned_cols=287 Identities=12% Similarity=0.146 Sum_probs=167.9
Q ss_pred CChHHHHHHHHhcCCCCcccH---HHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcc------cHHhHHHHHhccccHHH
Q 003531 389 KKVDRAADIFSKLQGKTLVSW---NAMILGYAQNGRVNEALNYFCKMRSKNIKPDSF------TMVSVIPALAELSVIRY 459 (812)
Q Consensus 389 g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~~~~~~ 459 (812)
.+.++|.++|-+|.+.|..++ -+|...|-+.|..++|+.+-+.+.++ ||.. ....+..-|...|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 455556666655555444433 23445555556666666555555442 2211 11122223344455555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--------HHHHHHHHHHHhCCCHHHHHHHHH
Q 003531 460 AKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHV--------TTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 460 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
|+.+|..+.+.+ ..-......|+..|-+..++++|.++-+++.+-+. ..|--+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555555554422 11222345566677777777777776665542221 134445555566677888888888
Q ss_pred HHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003531 532 KMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG 609 (812)
Q Consensus 532 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd 609 (812)
+..+ ..|+.+ .=..+.......|+++.|.+.++...+. +..--.++...|..+|...|+.++...++.++ ...++
T Consensus 205 kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 8887 345433 3334556777888888888888877754 22224567777888888888888888888776 44455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhh--hhcCCchHHHHHHHHHHHcCCccCCccc
Q 003531 610 ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIY--AAASMWDKLAKVRTIMEKKGLQKTPGCS 682 (812)
Q Consensus 610 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~s 682 (812)
...-..+...-..+.-.+.|...+.+-+.-.|+--+.|-++.--. +..|++.+..-+.+.|....++..|.+.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 555455555444444456677777777777786444444433322 3456688888788888776666656443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.4e-09 Score=106.13 Aligned_cols=189 Identities=16% Similarity=0.043 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISAC 552 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 552 (812)
..|..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++.|++.++ +.|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 446666777888888888888888776 24567888888888889999999999988887 5675 55777777888
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~ 630 (812)
...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. ...|+...| .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-
Confidence 888999999988888774 3553222222223344567888888888654 223332222 2222334544333
Q ss_pred HHHHHHh-------ccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 631 KAANRLF-------ELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 631 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 4556667788999999999999999999998887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.9e-08 Score=97.58 Aligned_cols=196 Identities=17% Similarity=0.197 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMY 486 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 486 (812)
..+..+...|...|++++|.+.|++..+.. |+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHHH
Confidence 457777788888888888888888776532 32 223344555666
Q ss_pred HhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHH
Q 003531 487 AKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGI 562 (812)
Q Consensus 487 ~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 562 (812)
...|++++|.+.|++.. ..+...+..+...|...|++++|.+.|++.+.....| ....+..+..++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 66677777777766554 2344566667777777777778877777777643222 2335555666777788888888
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 563 HYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 563 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
..+++..+. .| +...+..++..+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888777643 33 4566777778888888888888887776 2233 4556666667777778888888877776655
Q ss_pred CC
Q 003531 640 DP 641 (812)
Q Consensus 640 ~p 641 (812)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 43
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-05 Score=86.43 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=63.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HhcCCC---CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 003531 548 AISACSHSGLVEEGIHYFTSLK---------------KDYGIE---PVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPG 609 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~---------------~~~~~~---p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd 609 (812)
.+.+++....|.+|.++-++.. +.-|-- -++.+ -+-+|++...|++++|++--++-..+|-
T Consensus 1245 aida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdv-iaaidl~ien~qwdk~idtak~qnykpi 1323 (1636)
T KOG3616|consen 1245 AIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDV-IAAIDLMIENDQWDKAIDTAKKQNYKPI 1323 (1636)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhH-HHHHHHHHhcccHHHHHHHHHhcccHHH
Confidence 3567777777777766544331 111110 12222 2457899999999999998888777776
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHhc-cCCCCccchh
Q 003531 610 ITVFGAMLGAC-KIHKNVELGEKAANRLFE-LDPDEGGYHV 648 (812)
Q Consensus 610 ~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~-~~p~~~~~~~ 648 (812)
..-|-++..+. ...|+..+++.++++-=. .+|.|..+|-
T Consensus 1324 l~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk 1364 (1636)
T KOG3616|consen 1324 LDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYK 1364 (1636)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHH
Confidence 66666666664 445788888888776533 4565555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-08 Score=104.38 Aligned_cols=231 Identities=14% Similarity=0.169 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCC----------Cc-ccHHHHHHHHHHcCChHHHHHHHHHHhhC---CCCCCcc
Q 003531 377 MTNSLISMYSKCKKVDRAADIFSKLQGK----------TL-VSWNAMILGYAQNGRVNEALNYFCKMRSK---NIKPDSF 442 (812)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ 442 (812)
+..-|..+|...|+++.|..+|+...+. .+ ...+.+...|...+++++|..+|+++..- ..-++.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h- 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH- 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 3344666677777777777666554321 11 11234555677777777777777776541 111111
Q ss_pred cHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----------CCChH-HHH
Q 003531 443 TMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN----------ERHVT-TWN 511 (812)
Q Consensus 443 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----------~~~~~-~~~ 511 (812)
+.-..+++.|...|.+.|++++|...++... .+.+. -.+
T Consensus 280 ------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 280 ------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred ------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 1123455666677888888887777666544 12333 455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC---CCCCCh----hHHHHHHHHHHhcCcHHHHHHHHHHHHHhc-----CCCC-Ch
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEG---PTKPND----ITFLCAISACSHSGLVEEGIHYFTSLKKDY-----GIEP-VM 578 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~ 578 (812)
.++..+...+++++|..++++..+. -+.++. -++..+...+.+.|++++|.++|++..... +..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788889999999998877542 123333 478899999999999999999999887543 1123 35
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDFIQKM--------PIEPGI-TVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
..++-|...|.+.++.++|.++|.+. +-.|+. .++..|...|...|++|.|+++.++++.
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67888999999999999999888775 344554 4899999999999999999999998874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-06 Score=86.61 Aligned_cols=277 Identities=13% Similarity=0.006 Sum_probs=187.6
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc----HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 003531 405 TLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT----MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMT 480 (812)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 480 (812)
|+.....+...+...|+.++|...|++.+. +.|+.++ |..+ +...|+.+....+...+.... ..+...|-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 666777888888888999999988888765 3344332 2222 245566666665555544321 01111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcC
Q 003531 481 ALIDMYAKCGAVGTARALFDMMNER---HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSG 556 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 556 (812)
.-........+++.|+.+-++..+- ++..+-.-...+.+.|++++|.-.|+..+. +.| +-..|..|+..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 1122233456777888777776643 334444334567788889999888988887 565 4568889999998899
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHHhhcC-CHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 003531 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMV-DLLGRAG-RLNEAWDFIQKM-PIEPGIT-VFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~g-~~~eA~~~~~~~-~~~pd~~-~~~~ll~~~~~~g~~~~a~~~ 632 (812)
...||...-+...+. +..++.+.+.++ +.+.-.- --|+|.+++++. .++|+-. ..+.+...|...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999888877766643 333556665553 3333222 346788888877 6778744 556667778888999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLET 712 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 712 (812)
+++.+...|| ...+..|++++.....+++|...|...... +|+.+...+-+..
T Consensus 461 Le~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHH
Confidence 9999988885 567888999999999999998888777654 6777777666777
Q ss_pred HHHHHH
Q 003531 713 LIDEIK 718 (812)
Q Consensus 713 l~~~m~ 718 (812)
|.++|+
T Consensus 514 lEK~~~ 519 (564)
T KOG1174|consen 514 LEKSDD 519 (564)
T ss_pred HHhccC
Confidence 776665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-06 Score=93.16 Aligned_cols=276 Identities=13% Similarity=0.003 Sum_probs=172.6
Q ss_pred HHHHHHHHhcC---CCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHH
Q 003531 392 DRAADIFSKLQ---GKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVI 468 (812)
Q Consensus 392 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 468 (812)
..|...+.... ..+...||.|.-. ..-|++.-|..-|-+-.... +....+|..+--.|....+++.|.+.+...+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35666666543 3466788877655 55577777776666555432 3346677777767788889999998888776
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----
Q 003531 469 RSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--------ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLE----- 535 (812)
Q Consensus 469 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 535 (812)
... +.+..-|-...-.....|+.-++..+|..-. -++..-|-.-..-..++|+.++-+...++.-.
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 543 2233333333333345677777777776521 25556666666666777776665544443321
Q ss_pred ----CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCC
Q 003531 536 ----GPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA----MVDLLGRAGRLNEAWDFIQKMPIE 607 (812)
Q Consensus 536 ----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~eA~~~~~~~~~~ 607 (812)
.|.+-+...|...+....+.+.+.+|.+...+...-....-+...|+. ....+...|.++.|..-+...+..
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 133445678888888889999988888877765533222334555553 445566678888887777666555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh---hHhhhhhhcCCchHHHHHHHHHH
Q 003531 608 PGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV---LLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 608 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
-|..+-.+-++. .-.|+++.+.+.|++++.+..++...-+ .++......+.-+.|....-+..
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 555555544444 4468899999999999987655444333 34444566677777776544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-07 Score=95.81 Aligned_cols=198 Identities=8% Similarity=-0.051 Sum_probs=131.9
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHH
Q 003531 448 IPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--R-HVTTWNVMIDGYGTHGLGK 524 (812)
Q Consensus 448 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 524 (812)
...+...|+.+.|...+...++.. +.+...|+.+...|...|++++|.+.|++..+ | +..+|..+...+...|+++
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 334444555555555555554433 23567788888999999999999999998863 3 4678888889999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH--HHHHHHH
Q 003531 525 AAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLN--EAWDFIQ 602 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--eA~~~~~ 602 (812)
+|++.|++..+ ..|+..........+...++.++|...|.+.... ..|+...+ .++..+ .|++. ++.+.+.
T Consensus 150 eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~ 222 (296)
T PRK11189 150 LAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVEFY--LGKISEETLMERLK 222 (296)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHHHH--ccCCCHHHHHHHHH
Confidence 99999999998 5676542222233345678899999999765532 34433222 333333 44443 3343333
Q ss_pred hC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-CCccchhhHhhh
Q 003531 603 KM-P----IEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDP-DEGGYHVLLANI 653 (812)
Q Consensus 603 ~~-~----~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~ 653 (812)
+. . ..| ....|..++..+.+.|++++|+..|+++++++| +..+.-..+..+
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 22 1 122 235899999999999999999999999999997 444443334433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-06 Score=80.40 Aligned_cols=215 Identities=14% Similarity=0.113 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcC-------ChHHHHHH
Q 003531 356 LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNG-------RVNEALNY 428 (812)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~ 428 (812)
-+.|.+++--+.+. .| ...-.|+--|.+.+++.+|..+.+++....+.-|-.-.-.++..| ...-|.+.
T Consensus 270 gEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 34555554444332 11 222345666889999999999988877655433322222223333 33445566
Q ss_pred HHHHhhCCCCCCccc-HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 003531 429 FCKMRSKNIKPDSFT-MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--- 504 (812)
Q Consensus 429 ~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--- 504 (812)
|+-.-+++..-|... -.++.+++.-...++........+...-...|...+| +.++++..|+..+|+++|-.+..
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh
Confidence 654444544434222 2233333344445566665555555544444444443 56677777777777777776664
Q ss_pred CChHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHH
Q 003531 505 RHVTTWNVM-IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL-CAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY 581 (812)
Q Consensus 505 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 581 (812)
+|-.+|-++ ...|.++++++-|.+++-++.. +.+..... .+.+-|.+.+.+=-|-+.|+.+. .++|+++.|
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 344555543 3456677777777666544422 11222222 23345566666555555555554 245555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-08 Score=95.27 Aligned_cols=227 Identities=13% Similarity=0.070 Sum_probs=139.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003531 410 NAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKC 489 (812)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 489 (812)
+-|...|.+.|.+.+|.+.|+.-.++ .|-..||..+-.+|.+...++.|..++...++. ++-++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46777888888888888888777665 344445555555555555555555555544433 122333333333344444
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 490 GAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 490 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
++.++|+++|++..+. .|+ .....++...|.-.++.+-|+.+|+++
T Consensus 304 -------------------------------~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 304 -------------------------------EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -------------------------------HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 4445555555554442 222 223333444444445555555555554
Q ss_pred HHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 569 KKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PIEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 569 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
.+- |+. +.+.|+.++-++.-.+++|-++.-|+++ ...|+ ..+|..|.....-.||+..|.+.|+-++..+|++
T Consensus 351 Lqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 432 321 3344444444444455555555555444 12343 4589888888888999999999999999999999
Q ss_pred ccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 644 GGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 644 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
.+.++.|+-+-.+.|+.++|+.++.......
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999887653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-05 Score=79.15 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=52.0
Q ss_pred HHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--hc
Q 003531 111 KGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTG--VVNMYA--KC 186 (812)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~--Li~~y~--~~ 186 (812)
.-+..+|++++|+....++...+ +-|...+..-+-+..+.+.++.|..+.. ..+. ..+++. +=.+|| +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34455566666666666665543 2233334444444555555555553221 1111 011111 223333 34
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003531 187 GQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEE 233 (812)
Q Consensus 187 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 233 (812)
+..++|...++....-+..+...-...+.+.|++++|+++|+.+.+.
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 55555555555333222223333334445555555555555555444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-05 Score=83.76 Aligned_cols=442 Identities=13% Similarity=0.153 Sum_probs=253.9
Q ss_pred CcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHH
Q 003531 150 DVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDL 226 (812)
Q Consensus 150 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 226 (812)
..+.+..+.++.+.+++ +++....+.....-.+...|+.++|......-.. +..+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44556666666666665 3333333333333334556888888877766554 4567899888888888899999999
Q ss_pred HHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcC---CCC
Q 003531 227 VTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGM---KSR 303 (812)
Q Consensus 227 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~ 303 (812)
|+..... .||.... +.-|.-.-.+.|+++.....-... ...
T Consensus 98 y~nAl~~--~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHhc--CCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9988774 3444321 111111111222222222221111 123
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCChhhHHHHH------HHHhccCChHHHHHHHHHHhhcCCCCChh
Q 003531 304 NVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQG-VEPTNVTIMEAL------HACADLGDLERGIFVHKLLDQLKLGTDVS 376 (812)
Q Consensus 304 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 376 (812)
....|..++-++.-.|+...|..++++..+.. -.|+...+.... ......|..+.+.+........ +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 45678888888888888888888888887664 245555443322 2234556666666655443322 111222
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCc--ccHHH-HHHHHHHcCChHHHH-HHHHHHhhCCCCCCcccHHhHHHHHh
Q 003531 377 MTNSLISMYSKCKKVDRAADIFSKLQGKTL--VSWNA-MILGYAQNGRVNEAL-NYFCKMRSKNIKPDSFTMVSVIPALA 452 (812)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~ 452 (812)
.--.-.+.+.+.+++++|..++..+..+++ +-|+- +..++.+-.+.-+++ .+|....+.-.+ ....-..=++...
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLN 299 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhC
Confidence 334456778899999999999999887655 33333 334443333444444 566555443111 1111111111122
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcC--------------CCChHHHHH--
Q 003531 453 ELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVG---T-ARALFDMMN--------------ERHVTTWNV-- 512 (812)
Q Consensus 453 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~---~-A~~~~~~m~--------------~~~~~~~~~-- 512 (812)
...-.+....++....+.|+++ ++..+...|-.-...+ + +..+...+. .|....|+.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 2222333444555566666554 2333333333211111 1 111222111 245556665
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRA 591 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 591 (812)
++..|-..|+++.|+...+..+. -.|+.+ -|..=...+.+.|++++|..++++..+- -.||...-+--+.-..|+
T Consensus 377 laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHc
Confidence 67778899999999999999988 567644 5666678899999999999999988742 234665554567777899
Q ss_pred CCHHHHHHHHHhCC-CCCCH--------HHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 003531 592 GRLNEAWDFIQKMP-IEPGI--------TVFGAML--GACKIHKNVELGEKAANRLF 637 (812)
Q Consensus 592 g~~~eA~~~~~~~~-~~pd~--------~~~~~ll--~~~~~~g~~~~a~~~~~~~~ 637 (812)
.+.++|.++..... ..-+. -.|-.+- .+|.++|++-+|++-|..+.
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 99999998876661 11121 2455443 35778888877777665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.8e-08 Score=92.40 Aligned_cols=240 Identities=12% Similarity=0.039 Sum_probs=174.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC--CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHh-HHHHHhcc
Q 003531 378 TNSLISMYSKCKKVDRAADIFSKLQG--KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVS-VIPALAEL 454 (812)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~ 454 (812)
-+-+...|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+-.+++.|+.+|.+-.+. .|-.+||.. ..+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 36788999999999999999988654 46678999999999999999999999988774 677777743 33445555
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003531 455 SVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKML 534 (812)
Q Consensus 455 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (812)
+..+.+.+++..+.+.. ..++.+..++..+|.-.++++-|+..|++++
T Consensus 304 ~~~~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HhHHHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 56666666665555432 2234444555666777788888888888888
Q ss_pred hCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 003531 535 EGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP--VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-I 610 (812)
Q Consensus 535 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~ 610 (812)
+.|+. +...|..+.-+|.-.+++|-++.-|.+.... --.| -.++|-.+.......|++.-|.+-|+-. ...|+ .
T Consensus 352 qmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 87753 5667777777888888888888877776643 3334 3567777887778888888888888766 33443 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhh
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANI 653 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 653 (812)
..++.|.-.-.+.|+++.|..++..+-...|+-.+....|+-+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 4777777667778888888888888888888766655555433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00014 Score=79.20 Aligned_cols=328 Identities=14% Similarity=0.138 Sum_probs=190.3
Q ss_pred CCCCCchHHH-HHHH--HhhcCCChhHHHHhhccCCCCChhHHHHHHHHHHhcCCchHHHHHHHHhHhC-C-------CC
Q 003531 67 GLCDQHLFQT-KLVS--LFCKYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFLIRMRYD-D-------VA 135 (812)
Q Consensus 67 g~~~~~~~~~-~l~~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-------~~ 135 (812)
|+..-+.... .+++ .|..-|+.+.|.+-...+.. ...|..|.+-|.+..+++-|.-.+..|... | .+
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 3432344444 4543 57788999999888877654 457999999999999999888777777532 1 11
Q ss_pred CCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCC-cchHHHHHHHH
Q 003531 136 PVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERD-LVSWNTIVAGF 214 (812)
Q Consensus 136 p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~ 214 (812)
-+..+=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.+-. ..||.--..-+
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 111332333333457789999999999887764 34566778899999998865433211 12444444445
Q ss_pred HhCCChHHHHHHHHHH----------HHcCC---------CCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 003531 215 AQNGFAELALDLVTRM----------HEEGR---------RGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVN 275 (812)
Q Consensus 215 ~~~g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 275 (812)
-..++.+.|++.|++- ..... .-|...|.---.-+-..|+.+.|..++..+..
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 5567777777777642 11110 11121222222223344555555555554432
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 003531 276 VSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGD 355 (812)
Q Consensus 276 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 355 (812)
|-+++...|-.|+.++|-++-++- .|......+.+-|-..|++.+|...|.+.+ +|...|+.|-..+-
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDM 1008 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCH
Confidence 344555556667777777766543 455666677888888888888888887764 34555554433221
Q ss_pred ---------------hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--------------CCc
Q 003531 356 ---------------LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQG--------------KTL 406 (812)
Q Consensus 356 ---------------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------------~~~ 406 (812)
.-.|-+.|++ .|.. ..--+..|-|.|.+.+|+++--+-.+ .|+
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 1122222221 1111 12234567778887777765322111 133
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHh
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMR 433 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (812)
...+--..-++.+.++++|..++-..+
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444444555666777777777765544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-07 Score=91.09 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCc-hHHHHHHHH
Q 003531 593 RLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMW-DKLAKVRTI 669 (812)
Q Consensus 593 ~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 669 (812)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|+..++++++.+|+++.+...++-+....|+. +.+.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 566666666666 23456667777777777888888888888888888888888888888888888888 556667776
Q ss_pred HHHc
Q 003531 670 MEKK 673 (812)
Q Consensus 670 m~~~ 673 (812)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-07 Score=96.76 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=146.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh--------
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-------- 543 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------- 543 (812)
+...|--|...-...++-..|+..+.+.. ..|....-+|.-.|...|.-.+|++.++.-+... |...
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGEN 395 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCcc
Confidence 44455555555555566666666666555 2455666777777888888888888887765532 1100
Q ss_pred -HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003531 544 -TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGAC 620 (812)
Q Consensus 544 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~ 620 (812)
.+..- ........+....++|-.+....+..+|++++.+|+-+|--.|.+++|.+-|+.+ ..+| |...||-|+...
T Consensus 396 ~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 396 EDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred ccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 00000 1112223344556667777766676688889999999999999999999999998 6788 678999999999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
....+.++|+.+|.+++++.|.-..+.+.|+-.|...|.++||.+.+-.+...
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988777653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00015 Score=77.57 Aligned_cols=441 Identities=9% Similarity=0.052 Sum_probs=273.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 003531 217 NGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLV 296 (812)
Q Consensus 217 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 296 (812)
.+++...+.+.+..... ..-...|....--.+...|+.++|....+..++.. ..+.+.|..+.-.+-...++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45667777777666652 22223344333334556788888888877777644 33456677777777778899999999
Q ss_pred HhcCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHhhcCC-
Q 003531 297 FDGMKS---RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT-NVTIMEALHACADLGDLERGIFVHKLLDQLKL- 371 (812)
Q Consensus 297 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~- 371 (812)
|..... .|...|..+.-.-++.++++.....-.+..+. .|. ...|.....+..-.|+...|..+.+...+...
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 987654 56778888777777888888888888877764 444 44677777788888999999999999888763
Q ss_pred CCChhHHHHHH------HHHHhCCChHHHHHHHHhcCCC--Ccc-cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcc
Q 003531 372 GTDVSMTNSLI------SMYSKCKKVDRAADIFSKLQGK--TLV-SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSF 442 (812)
Q Consensus 372 ~~~~~~~~~Li------~~y~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 442 (812)
.|+...+.-.. ....+.|..++|.+.+...... |-. .-.+....+.+.++.++|..++..++.. .||.+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 45554443222 3346788888898887765543 222 2334566788999999999999999985 58888
Q ss_pred cHHhHHHHHh-c-cccHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcCCCC-hHHHHHHHH
Q 003531 443 TMVSVIPALA-E-LSVIRYAKWIHALVIRSC---FEKNVFVMTALIDMYAKCGAVG-TARALFDMMNERH-VTTWNVMID 515 (812)
Q Consensus 443 t~~~ll~a~~-~-~~~~~~a~~i~~~~~~~~---~~~~~~~~~~li~~y~k~g~~~-~A~~~~~~m~~~~-~~~~~~li~ 515 (812)
-|...+..+. . .+..+....++....+.- ..|-..-.+.+ ...++. ..-+++..+.++. +..+..+.+
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-----NGEELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-----CcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 7777666555 2 233333335555443321 11111111111 011122 2223333333322 223344444
Q ss_pred HHHhCCCHHH----HHHHHHHHHhCC----------CCCChh--HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-h
Q 003531 516 GYGTHGLGKA----AVELFNKMLEGP----------TKPNDI--TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-M 578 (812)
Q Consensus 516 ~~~~~g~~~~----A~~~~~~m~~~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 578 (812)
.|-.-...+- +..+..-+-..| -+|... |+..+...+-+.|+++.|..+++... +..|+ +
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTli 405 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLI 405 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHH
Confidence 4432221111 111111111111 144433 45567778899999999999999887 56775 5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-------cchh-
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDFIQKM-PI-EPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG-------GYHV- 648 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~- 648 (812)
+-|..=..++...|.+++|..++++. .+ .||..+-.--..-..+.++.++|.+++.+.-.-+-+-. -.+.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 67777778899999999999999988 32 34554433344445567889999998887765443110 1122
Q ss_pred -hHhhhhhhcCCchHHHHHHHHHH
Q 003531 649 -LLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 649 -~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
-=|.+|.++|+|.+|.+-|..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 23667888888888877555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-05 Score=76.38 Aligned_cols=306 Identities=11% Similarity=0.092 Sum_probs=178.9
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhHHHHH---HHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH
Q 003531 282 DMYAKCGRVETARLVFDGMKSRNVVSWNSMI---AAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLER 358 (812)
Q Consensus 282 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 358 (812)
..+...|++.+|+.-|....+-|...|-++. ..|...|+...|+.-|...++. +||-..-.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR-------------- 109 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR-------------- 109 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH--------------
Confidence 3344556777777777777766666665553 3566667777776666666653 55532110
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCC
Q 003531 359 GIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIK 438 (812)
Q Consensus 359 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 438 (812)
+ --...+.|.|.++.|..-|+.+...++. -+....++.+.-..++-..+
T Consensus 110 --------i------------QRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l---------- 158 (504)
T KOG0624|consen 110 --------I------------QRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVL---------- 158 (504)
T ss_pred --------H------------HhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHH----------
Confidence 0 0112356777777777777776654331 01111111111111111111
Q ss_pred CCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHH
Q 003531 439 PDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMID 515 (812)
Q Consensus 439 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~ 515 (812)
...+..+...|+...+......+++.. +.|...+..-..+|...|++..|..-+.... +.+....--+-.
T Consensus 159 ------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 159 ------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred ------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 112223344556666666666665543 4567777777888888999988876665544 456666666777
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhH-H---HHH---------HHHHHhcCcHHHHHHHHHHHHHhcCCCCC-----
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPNDIT-F---LCA---------ISACSHSGLVEEGIHYFTSLKKDYGIEPV----- 577 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 577 (812)
.+...|+.+.++...++-++ +.||.-. | ..| +......+.|-++.+..+...+. .|.
T Consensus 232 L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir 306 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIR 306 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCccccee
Confidence 78888999999998888888 6787542 1 111 11223455555666555555432 332
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 578 MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 578 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
...+..+-.++...|++-||++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|+|..+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 223334445566677777777777665 55664 5566666667777777778888888888877766443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=85.57 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=96.2
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 528 ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 528 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
.+|++.++ +.|+. +.....++...|++++|...|+.... +.| +...|..++.++.+.|++++|...++++ .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 55654 44566777888888888888888773 456 6788888888888999999999988887 5
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhh
Q 003531 606 IEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYA 655 (812)
Q Consensus 606 ~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 655 (812)
..| +...|..++.++...|+.++|+..+++++++.|+++..+..++++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 556 66788888888889999999999999999999999888887776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-06 Score=85.46 Aligned_cols=213 Identities=14% Similarity=0.069 Sum_probs=110.9
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH----------HHHHHHHH
Q 003531 447 VIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVT----------TWNVMIDG 516 (812)
Q Consensus 447 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~----------~~~~li~~ 516 (812)
+.++..+..+++.+.+-+...++.. .++.-++....+|...|...+....-+...+..-. ....+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3444444455555555555555544 44444555555666666665555544443321111 12223345
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhhcCCHH
Q 003531 517 YGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVM-DHYGAMVDLLGRAGRLN 595 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~ 595 (812)
|.+.++++.|+..|++.+.....||.. .+....+++....+... -+.|.. .-...=+..+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 556667777777777765544343321 11222233333222221 233321 11111245555666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 596 EAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 596 eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.+....+.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666665 3345 45555555555666666666666666666666666666666666666666666666666655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.7e-06 Score=88.60 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=107.2
Q ss_pred HhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCccc---HHHHHHHHHHc-----CC
Q 003531 350 CADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVS---WNAMILGYAQN-----GR 421 (812)
Q Consensus 350 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~-----g~ 421 (812)
+...|++++|.+.+..-.+. +.....+.......|.+.|+.++|..++..+..+|+.. |..+..+.... ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 34556666666665443322 22234444555566666666666666666666544432 22233332111 13
Q ss_pred hHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 003531 422 VNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI-RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFD 500 (812)
Q Consensus 422 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 500 (812)
.+...++|+++...- |.......+.-.+.....+ ..+..+....++.|+++ +++.|-..|....+.+-..+++.
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 445555666555432 3322222221111111111 22333334444445332 34444444544333333333333
Q ss_pred hcC------------------CCChHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHH
Q 003531 501 MMN------------------ERHVTTW--NVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVE 559 (812)
Q Consensus 501 ~m~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 559 (812)
... .|....| .-+...|...|++++|+++.++.++ ..|+ ...|..-...+-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 221 0112222 2234444455555555555555555 3344 224444455555555555
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 560 EGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
+|.+.++... .+++ |...-+-.+..+.|+|++++|.+.+...
T Consensus 246 ~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 246 EAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 5555555444 2333 4444444444555555555555554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.9e-05 Score=80.73 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 003531 483 IDMYAKCGAVGTARALFDMMN--------------ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCA 548 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 548 (812)
+..|-|.|.+.+|+++--+-. ..|+...+--..-+..+.++++|..++-...+ |...
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~A 1112 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGA 1112 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHH
Confidence 456888888888876532222 13555566666667788888888888776654 3445
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 003531 549 ISACSHSGLVEEGIHYFTSLKKDYGIEPV----MDHYGAMVDLLGRAGRLNEAWDFIQKMP 605 (812)
Q Consensus 549 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~ 605 (812)
+..|...| +.-..++-+.|.-...-.|+ ......+.+.+.++|.+.-|-+-|.+++
T Consensus 1113 lqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1113 LQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 55554433 22223333333221112222 3556677888888888888888887774
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-06 Score=76.57 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISAC 552 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 552 (812)
.++..+...|.+.|..+.|.+.|++.. ..+-...|....-+|..|++++|...|++.+..-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344555555666666666666665544 23344455555555666666666666666665322222 34555555555
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a 629 (812)
.+.|+.+.|.++|++..+ +.| .....-.|.+...+.|++-+|..+++.. ...+...+..-.+..-...||.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 666666666666666553 334 3445555666666666666666666655 2234444444444445556666666
Q ss_pred HHHHHHHhccCCCCc
Q 003531 630 EKAANRLFELDPDEG 644 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~ 644 (812)
-+.-.++...-|...
T Consensus 227 ~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 227 QRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHhCCCcH
Confidence 666666666666443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-05 Score=86.28 Aligned_cols=283 Identities=13% Similarity=0.095 Sum_probs=186.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhC--
Q 003531 312 IAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT-IMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKC-- 388 (812)
Q Consensus 312 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-- 388 (812)
...+...|++++|++.+.+-.. ..+|..+ +......+.+.|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 3456788999999999977544 3556554 44556678899999999999999999973 3555566666665222
Q ss_pred ---CChHHHHHHHHhcCCCCccc--HHHHHHHHHHcCChH-HHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHH
Q 003531 389 ---KKVDRAADIFSKLQGKTLVS--WNAMILGYAQNGRVN-EALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKW 462 (812)
Q Consensus 389 ---g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 462 (812)
.+.+...++++++....+.+ ...+.-.+.....+. .+..++..+...|+++ +|+.+-..|...........
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25677788888876654322 222222222222333 4555667777888654 56666666665555555555
Q ss_pred HHHHHHHh----C----------CCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCH
Q 003531 463 IHALVIRS----C----------FEKNVF--VMTALIDMYAKCGAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLG 523 (812)
Q Consensus 463 i~~~~~~~----~----------~~~~~~--~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~ 523 (812)
++...... + -+|+.. ++.-+...|-..|++++|+++.++.. .|+ +..|..-...|-+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 55544332 1 123443 44556778889999999999999877 354 55788888999999999
Q ss_pred HHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHH--------HHHHHHHhhcCCH
Q 003531 524 KAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY--------GAMVDLLGRAGRL 594 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--------~~li~~~~~~g~~ 594 (812)
.+|.+.+++.... .+ |...=+-....+.+.|++++|.+.+....+. +..|....+ .-.+.+|.|.|++
T Consensus 245 ~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 245 KEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999884 44 4555556677789999999999999887755 434421111 1224555566666
Q ss_pred HHHHHHHHh
Q 003531 595 NEAWDFIQK 603 (812)
Q Consensus 595 ~eA~~~~~~ 603 (812)
..|++.|..
T Consensus 322 ~~ALk~~~~ 330 (517)
T PF12569_consen 322 GLALKRFHA 330 (517)
T ss_pred HHHHHHHHH
Confidence 666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00076 Score=82.26 Aligned_cols=362 Identities=10% Similarity=-0.019 Sum_probs=158.2
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCchh--HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH
Q 003531 281 VDMYAKCGRVETARLVFDGMKSRNVVS--WNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLER 358 (812)
Q Consensus 281 i~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 358 (812)
...|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344556677777766666555432211 111122344556666666665554211111111112222233345566677
Q ss_pred HHHHHHHHhhcCCC------CC--hhHHHHHHHHHHhCCChHHHHHHHHhcCC----CCc----ccHHHHHHHHHHcCCh
Q 003531 359 GIFVHKLLDQLKLG------TD--VSMTNSLISMYSKCKKVDRAADIFSKLQG----KTL----VSWNAMILGYAQNGRV 422 (812)
Q Consensus 359 a~~i~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~ 422 (812)
+...+..+...--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 66666555432100 00 11111222334455566666555554322 111 1223333444455555
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003531 423 NEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF-EKNVFVMTALIDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 423 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 501 (812)
++|...+.+.....-. .|. .........+...+...|++++|...+++
T Consensus 508 ~~A~~~~~~al~~~~~-------------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 508 ARALAMMQQTEQMARQ-------------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHHHHHHHHHHHhh-------------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555554431000 000 00111223333444455555555554443
Q ss_pred cCC-------C----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCC--hhHHHHHHHHHHhcCcHHHHHHHHH
Q 003531 502 MNE-------R----HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGP--TKPN--DITFLCAISACSHSGLVEEGIHYFT 566 (812)
Q Consensus 502 m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~ 566 (812)
... + ....+..+...+...|++++|...+++..... ..+. ...+..+.......|+.++|.+.+.
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 321 0 01123333344445566666666665554321 1111 1223334444555666666666665
Q ss_pred HHHHhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 567 SLKKDYGIEPVMDHY-----GAMVDLLGRAGRLNEAWDFIQKMPI-E-PGI----TVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 567 ~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~~~~-~-pd~----~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
..............+ ......+...|+.++|.+++..... . ... ..+..+..++...|+.++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 554321111000000 0111333445666666666655411 0 111 1123444455566667777776666
Q ss_pred HhccCC------CCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 636 LFELDP------DEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 636 ~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+++... +...++..++.+|...|+.++|...+.+..+.
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 665321 11234556666677777777777666666553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-05 Score=83.32 Aligned_cols=293 Identities=9% Similarity=-0.066 Sum_probs=169.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCccc---HHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcc-cHHh---H
Q 003531 378 TNSLISMYSKCKKVDRAADIFSKLQG---KTLVS---WNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSF-TMVS---V 447 (812)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---l 447 (812)
+..+...|...|+.+.+.+.+..... .+... .......+...|++++|.+++++..+. .|+.. .+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 34444455555666665554444322 12211 222233456678888888888887764 34332 2221 1
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHH
Q 003531 448 IPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGK 524 (812)
Q Consensus 448 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 524 (812)
.......+..+.+.+.... .....+........+...+...|++++|.+.+++..+ .+...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1111123344444444433 1111122333445566678889999999999988773 44667788888899999999
Q ss_pred HHHHHHHHHHhCCC-CCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhhcCCHHHHH
Q 003531 525 AAVELFNKMLEGPT-KPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHY-G--AMVDLLGRAGRLNEAW 598 (812)
Q Consensus 525 ~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~ 598 (812)
+|...+++.+.... .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998887421 1222 235567778888999999999998875321111111111 1 2333334445333333
Q ss_pred HH---HHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---------CCccchhhHhhhhhhcCCchH
Q 003531 599 DF---IQKM-PIEPG---ITVFGAMLGACKIHKNVELGEKAANRLFELDP---------DEGGYHVLLANIYAAASMWDK 662 (812)
Q Consensus 599 ~~---~~~~-~~~pd---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~ 662 (812)
++ .... +..|+ .........++...|+.+.|...++.+....- .........+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 1111 11111 22223455667788899999999988765221 124556778888999999999
Q ss_pred HHHHHHHHHHc
Q 003531 663 LAKVRTIMEKK 673 (812)
Q Consensus 663 a~~~~~~m~~~ 673 (812)
|.+.+......
T Consensus 326 A~~~L~~al~~ 336 (355)
T cd05804 326 ALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-06 Score=86.40 Aligned_cols=179 Identities=11% Similarity=0.025 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh----H
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNE--RH-V---TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI----T 544 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 544 (812)
....+..+...|.+.|++++|...|+++.+ |+ . ..|..+...|.+.|++++|+..++++++ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 344555566666667777777777766552 22 1 3556666666777777777777777766 334322 3
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003531 545 FLCAISACSHS--------GLVEEGIHYFTSLKKDYGIEPVM-DHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGA 615 (812)
Q Consensus 545 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ 615 (812)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHHHH
Confidence 44444444433 5666666666666643 3321 122111111 0010000 0 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888899999999999999987765 468889999999999999999998887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-05 Score=79.17 Aligned_cols=164 Identities=16% Similarity=0.104 Sum_probs=118.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcH
Q 003531 482 LIDMYAKCGAVGTARALFDMMNE--RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLV 558 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 558 (812)
+...|.+.++.+.|...|.+... ++... ..+....++++...+...- +.|... -...-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 44578888999999999987652 22111 2233445666666555544 455432 233346778899999
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 559 EEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT-VFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 559 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~-~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
..|+..|.++++. .| |...|+.-.-+|.+.|.+.+|++-.+.. .+.|+.. .|.--+.++....+++.|...|++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 46 7899999999999999999999877666 5566543 554455666777899999999999
Q ss_pred HhccCCCCccchhhHhhhhhhc
Q 003531 636 LFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
.++.+|++..+...+...+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999888777777666543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-05 Score=84.87 Aligned_cols=450 Identities=14% Similarity=0.070 Sum_probs=219.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCcchHHhHHHH
Q 003531 173 LFAMTGVVNMYAKCGQIEEAYKMFDRMPE---RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGR-RGDFITIVSILPA 248 (812)
Q Consensus 173 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a 248 (812)
...|..|-..|...-+...|.+.|+..-+ .|..+|-.....|+...+++.|..+.-.--+... ..-...+...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45678888888877788888888887665 4556788888888888888888888332222110 0000111111112
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHH---HHHHHhCCChhHHH
Q 003531 249 VANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSM---IAAYVEGGNPEEAM 325 (812)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~ 325 (812)
+-..++...+..-++...+.. +.|...|..|..+|..+|+...|.++|++...-++.+|-.- ...-+.+|.+.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 233344444444444444332 33566677777777777777777777766655333332221 12234566677776
Q ss_pred HHHHHHHHcC------CCCChhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 003531 326 RIFQKMLDQG------VEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFS 399 (812)
Q Consensus 326 ~l~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 399 (812)
..+....... ..--..++..+...+...|-...+..++ +++.+.|.
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~----------------------------eksie~f~ 702 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF----------------------------EKSIESFI 702 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH----------------------------HHHHHHHH
Confidence 6666654320 0000001111111111111111111111 11111111
Q ss_pred hcCC----CCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH---H---HHHHHHHHHHH
Q 003531 400 KLQG----KTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI---R---YAKWIHALVIR 469 (812)
Q Consensus 400 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~ 469 (812)
-... .+...|-.+- +|..+|-+..- . .|+......+..-....+.. + .|-+.+ ...
T Consensus 703 ~~l~h~~~~~~~~Wi~as----------dac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~h 768 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVAS----------DACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAH 768 (1238)
T ss_pred HHHHHhhhhhHHHHHHHh----------HHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHH
Confidence 1110 1111222211 22223322220 0 11111111111101111111 1 000100 001
Q ss_pred hCCCCchhHHHHHHHHHHh----cC----CHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 003531 470 SCFEKNVFVMTALIDMYAK----CG----AVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPT 538 (812)
Q Consensus 470 ~~~~~~~~~~~~li~~y~k----~g----~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (812)
..+..+...|..|+.-|.+ +| +...|...+.+.. ..+...||+|.-. ...|.+.-|...|-+-+.. .
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-e 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-E 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-c
Confidence 1111123333333333322 22 2234555555444 4667778776555 5556666666666555553 2
Q ss_pred CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH
Q 003531 539 KPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-------PIEPGI 610 (812)
Q Consensus 539 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~pd~ 610 (812)
+-+..+|..+.-.|....+++.|.+.|...+ .+.| +...|--........|+.-++..+|..- +-.|+.
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 3346677777777777888888888887665 4566 5555554444555677777777776542 233455
Q ss_pred HHHHHHHHHHHhcCCHHHHHH----------HHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 611 TVFGAMLGACKIHKNVELGEK----------AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
..|..-.--..++|+.+.-+. +.++.++-.|++..+|...+...-+.+.+.+|.+...+.
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555544444555565554333 334445567777777777777777777777776665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-07 Score=80.18 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=103.6
Q ss_pred CCC-C-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 573 GIE-P-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 573 ~~~-p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
++. + +.+..-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|+..|.++..++|+|+.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 444 4 4566667788888999999999999988 5667 6779999999999999999999999999999999999999
Q ss_pred hHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 003531 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIK 718 (812)
Q Consensus 649 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 718 (812)
+++.+|...|+.++|++-|+...... ..+|+..+|.++.+.....+.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887641 136777777777776665554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=83.06 Aligned_cols=145 Identities=9% Similarity=0.087 Sum_probs=108.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAG 592 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 592 (812)
+..|...|+++......+++.. |. . .+...++.+++...++...+ ..| +...|..|+..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 3456777777665444332221 11 0 11225566777777766664 345 7888999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 593 RLNEAWDFIQKM-PIEP-GITVFGAMLGA-CKIHKN--VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 593 ~~~eA~~~~~~~-~~~p-d~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
++++|...+++. .+.| +..+|..+..+ +...|+ .++|..+++++++.+|+++.++..|+..+...|++++|...|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888 5666 56678777776 466676 599999999999999999999999999999999999999999
Q ss_pred HHHHHc
Q 003531 668 TIMEKK 673 (812)
Q Consensus 668 ~~m~~~ 673 (812)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 999875
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.1e-06 Score=84.18 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCH--HHHHHHHHHHHhCCCCC-ChhHHHHHHH
Q 003531 478 VMTALIDMYAKCG-AVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLG--KAAVELFNKMLEGPTKP-NDITFLCAIS 550 (812)
Q Consensus 478 ~~~~li~~y~k~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 550 (812)
+|+....++.+.| .+++++..++++. .++..+|+-....+.+.|+. ++++.+++++++ ..| |..+|.....
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w 150 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQW 150 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 3333334444455 5688888887766 34556777665555566653 678888888888 455 4668888888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRA---GRL----NEAWDFIQKM-PIEP-GITVFGAMLGAC 620 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~----~eA~~~~~~~-~~~p-d~~~~~~ll~~~ 620 (812)
++.+.|+++++++.++++++. .| +...|+....++.+. |.+ +++.++.+++ ...| |...|+.+.+.+
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll 227 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF 227 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 888889999999999998854 44 566777766666554 322 4677777554 6677 677999999998
Q ss_pred Hhc----CCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC------------------CchHHHHHHHHHH
Q 003531 621 KIH----KNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS------------------MWDKLAKVRTIME 671 (812)
Q Consensus 621 ~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 671 (812)
... ++..+|...+.+++..+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 228 KDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 874 44567999999999999999999999999998643 2356777777773
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=79.32 Aligned_cols=98 Identities=11% Similarity=-0.069 Sum_probs=89.0
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 574 IEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 574 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
+.|+ .+..++..+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4565 3556788999999999999999998 5566 6779999999999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHHc
Q 003531 652 NIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 652 ~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++...|++++|...++...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-05 Score=73.06 Aligned_cols=370 Identities=12% Similarity=0.066 Sum_probs=195.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC--CCchhHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--h
Q 003531 277 STALVDMYAKCGRVETARLVFDGMKS--RNVVSWNS-MIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHAC--A 351 (812)
Q Consensus 277 ~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~ 351 (812)
.+.|..+|....++..|-..++++.. |...-|.. -...+.+.+.+..|+++...|.+. |+...-..-+.+. -
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence 34455555566666666666655543 22222221 134455666777777777666532 2221111112221 2
Q ss_pred ccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC----CcccHHHHHHHHHHcCChHHHHH
Q 003531 352 DLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK----TLVSWNAMILGYAQNGRVNEALN 427 (812)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 427 (812)
..+++..+..+.++....| +..+.+-..-...+.|+.+.|.+-|+...+- ....||.-+..| +.|+++.|++
T Consensus 124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk 199 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALK 199 (459)
T ss_pred ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHH
Confidence 3455555555555443222 2333333333455778888888888776542 335666554443 5577888888
Q ss_pred HHHHHhhCCCCCCccc----HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003531 428 YFCKMRSKNIKPDSFT----MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN 503 (812)
Q Consensus 428 ~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 503 (812)
+..+++++|++-.+.. -+-.+. ...+.....++...+ +..+|.-...+.+.|+.+.|.+.+..|+
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 8888888776532111 000000 000111111111111 1223444455778999999999999998
Q ss_pred C-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCC-CC
Q 003531 504 E-----RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE-PV 577 (812)
Q Consensus 504 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~ 577 (812)
. -|++|...+.-.- ..+++.+..+-+.-+++.+. -...||..++-.||+..-++-|-.++.+-... -.. .+
T Consensus 269 PRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~ 345 (459)
T KOG4340|consen 269 PRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLT 345 (459)
T ss_pred CcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhh
Confidence 3 4677766554322 24556666666666666422 24679999999999999999888876532110 000 12
Q ss_pred hhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHH-HHH-HHhcCC----HHHHHHHHHHHhccCCCCccchhhH
Q 003531 578 MDHYGAMVDLLGRA-GRLNEAWDFIQKMPIEPGITVFGAM-LGA-CKIHKN----VELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 578 ~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~pd~~~~~~l-l~~-~~~~g~----~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
...|+ |++++.-+ -..++|++-+..+...- ..-.+.+ +.. -.++.+ ...+++-+++.+++- -......
T Consensus 346 ~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~ 420 (459)
T KOG4340|consen 346 PYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQ 420 (459)
T ss_pred HHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 23333 34555443 36777776665541000 0001111 111 111222 223444455555432 1245677
Q ss_pred hhhhhhcCCchHHHHHHHHHHH
Q 003531 651 ANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+++|++..++.-+.++|+.-.+
T Consensus 421 AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 421 AKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHhhccccccHHHHHHHHHHHh
Confidence 8999999999999999876554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=92.47 Aligned_cols=200 Identities=10% Similarity=0.109 Sum_probs=169.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhH
Q 003531 473 EKNVFVMTALIDMYAKCGAVGTARALFDMMNE--------RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDIT 544 (812)
Q Consensus 473 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 544 (812)
+.+...|-..+......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777778888889999999999998762 23458999999888889888899999999883 223456
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003531 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG---ITVFGAMLGAC 620 (812)
Q Consensus 545 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd---~~~~~~ll~~~ 620 (812)
|..|+..|.+.+..++|.++++.|.++++ -....|...++.+.+...-+.|.++++++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999877 56778999999999999999999999887 33342 33556666667
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
.++|+.+.|..+|+..+.-.|.-...|..++++-.+.|..+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999988663
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-06 Score=78.12 Aligned_cols=154 Identities=9% Similarity=0.152 Sum_probs=119.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHH
Q 003531 483 IDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGI 562 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 562 (812)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++.++.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888887765554433221 01223677788888898888842 335668888999999999999999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003531 563 HYFTSLKKDYGIEP-VMDHYGAMVDLL-GRAGR--LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRL 636 (812)
Q Consensus 563 ~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~--~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~ 636 (812)
..|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 566 788888888874 67787 59999999998 5667 5678888889999999999999999999
Q ss_pred hccCCCCccchh
Q 003531 637 FELDPDEGGYHV 648 (812)
Q Consensus 637 ~~~~p~~~~~~~ 648 (812)
++++|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999986655443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00041 Score=74.38 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=97.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003531 412 MILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491 (812)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 491 (812)
+...+...|++++|.+.+++..+. .|+. ...+..+...|...|+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~--~p~~----------------------------------~~~~~~la~i~~~~g~ 163 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALEL--NPDD----------------------------------AWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCC----------------------------------cHHHHHHHHHHHHcCC
Confidence 344566667777777777766653 2332 2334455555666666
Q ss_pred HHHHHHHHHhcCC-----CCh--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHH-H--HHHHHHHhcCcHHH
Q 003531 492 VGTARALFDMMNE-----RHV--TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITF-L--CAISACSHSGLVEE 560 (812)
Q Consensus 492 ~~~A~~~~~~m~~-----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~ 560 (812)
+++|...+++... ++. ..|..+...+...|++++|+.++++.......+. .... . .++.-....|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 6666666665542 121 2344566667777777777777777654221111 1111 1 22223333343332
Q ss_pred HHHH--HHHHHHhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCH
Q 003531 561 GIHY--FTSLKKDYGI-EPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP--IEP---G------ITVFGAMLGACKIHKNV 626 (812)
Q Consensus 561 a~~~--~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p---d------~~~~~~ll~~~~~~g~~ 626 (812)
+.++ .........- ..........+.++...|+.++|..+++.+. ... . ..+.-....++...|+.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111111000 0011122245566677888888888887761 111 1 11222222346678899
Q ss_pred HHHHHHHHHHhccC
Q 003531 627 ELGEKAANRLFELD 640 (812)
Q Consensus 627 ~~a~~~~~~~~~~~ 640 (812)
+.|...+..++.+-
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=60.21 Aligned_cols=33 Identities=30% Similarity=0.712 Sum_probs=25.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 003531 168 GFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP 200 (812)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 200 (812)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777888888888888888888888777774
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-06 Score=76.39 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=81.9
Q ss_pred CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhH
Q 003531 574 IEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 574 ~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 650 (812)
..| +......++..+.+.|++++|.+.++++ ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 455 4556667777888888888888888776 4445 567888888888888999999999999999999888899999
Q ss_pred hhhhhhcCCchHHHHHHHHHHHc
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998887765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0041 Score=65.46 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003531 423 NEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEK-NVFVMTALIDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 423 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~ 501 (812)
+.....+++....-..--..+|...++...+...+..|+.+|..+.+.+..+ ++.++++++.-|+. ++.+-|.++|+.
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 3444455554442211123456666666666677777777777777766555 67777777766663 566677777765
Q ss_pred cCC--CC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcC--C
Q 003531 502 MNE--RH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND--ITFLCAISACSHSGLVEEGIHYFTSLKKDYG--I 574 (812)
Q Consensus 502 m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 574 (812)
-.+ +| ..--+..+.-+...|+-..|..+|++.+..++.||. ..|..+|.--+.-|++....++-+++...+. .
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~q 506 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQ 506 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhh
Confidence 442 23 333344555556666666777777777766555553 3566666666666776666666665554433 3
Q ss_pred CCChhHHHHHHHHHhhcCCH
Q 003531 575 EPVMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 575 ~p~~~~~~~li~~~~~~g~~ 594 (812)
.|...+-..+++.|.-.+..
T Consensus 507 e~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 507 EYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cCCCChHHHHHHHHhhcccc
Confidence 33333334445555444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-05 Score=90.36 Aligned_cols=137 Identities=6% Similarity=-0.012 Sum_probs=114.8
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 003531 505 RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYG 582 (812)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 582 (812)
.++..+-.|.....+.|.+++|..+++...+ +.||.. .+..+..++.+.+.+++|...+++... ..| +..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 4577888888888999999999999999998 788754 677788899999999999998888874 467 678888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 583 AMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 583 ~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
.+..++.+.|++++|.++|+++ ...|| ...|.++..++...|+.++|..+|+++++...+....
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 8999999999999999999998 33454 6788999999999999999999999999876544433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-07 Score=58.89 Aligned_cols=33 Identities=42% Similarity=0.603 Sum_probs=25.7
Q ss_pred CCCCchhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003531 269 GFDSIVNVSTALVDMYAKCGRVETARLVFDGMK 301 (812)
Q Consensus 269 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 301 (812)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777888888888888888888887774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-05 Score=80.97 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhcccc
Q 003531 377 MTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSV 456 (812)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 456 (812)
+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+.
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa-------- 170 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLA-------- 170 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHH--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHH--------
Confidence 3333445677788888888887664 44556666778888899999999999888764 222 3332222
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKM 533 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (812)
.+.+..+.-.+.+.+|.-+|+++.+ +++.+.|.+..++.+.|++++|.+++++.
T Consensus 171 -----------------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 171 -----------------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp -----------------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred -----------------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2233333333456777777777653 45566677777777778888887777777
Q ss_pred HhCCCCC-ChhHHHHHHHHHHhcCcH-HHHHHHHHHHHHh
Q 003531 534 LEGPTKP-NDITFLCAISACSHSGLV-EEGIHYFTSLKKD 571 (812)
Q Consensus 534 ~~~g~~p-~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 571 (812)
... .| |..|...++.+....|+. +.+.+++..++..
T Consensus 228 l~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 653 34 355666677677777776 5566677776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.2e-05 Score=78.95 Aligned_cols=185 Identities=8% Similarity=0.038 Sum_probs=139.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCc
Q 003531 483 IDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHG-LGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGL 557 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 557 (812)
-..+.+.++.++|..+.+++.+ .+...|+..-..+...| ++++++..++++++. .|+ ..+|......+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 3345566788899999888773 34557777766777777 679999999999984 454 4456666555666665
Q ss_pred H--HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----
Q 003531 558 V--EEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIH---KN---- 625 (812)
Q Consensus 558 ~--~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~---g~---- 625 (812)
. +++..+++.+.+ +.| +..+|+...-++.+.|++++|++.++++ ...| |...|+......... |.
T Consensus 122 ~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 3 677888888874 566 7888999999999999999999999998 5555 677898888776654 22
Q ss_pred HHHHHHHHHHHhccCCCCccchhhHhhhhhhc----CCchHHHHHHHHHHH
Q 003531 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAA----SMWDKLAKVRTIMEK 672 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 672 (812)
.+.++....++++++|+|..++..++.++... ++..+|.+......+
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 25678888899999999999999999999873 445567666655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=78.63 Aligned_cols=180 Identities=13% Similarity=0.009 Sum_probs=126.8
Q ss_pred cccHHhHHHHHhccccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHH
Q 003531 441 SFTMVSVIPALAELSVIRYAKWIHALVIRSCFE-K-NVFVMTALIDMYAKCGAVGTARALFDMMNE--RH-V---TTWNV 512 (812)
Q Consensus 441 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~-~---~~~~~ 512 (812)
...+......+...|+++.|...++.+++.... + ....+..+...|.+.|++++|...|+++.+ |+ . ..|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 445666677788999999999999998875432 1 224667788999999999999999999873 32 2 24566
Q ss_pred HHHHHHhC--------CCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH
Q 003531 513 MIDGYGTH--------GLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA 583 (812)
Q Consensus 513 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 583 (812)
+..++.+. |++++|++.|+++++ ..|+.. ....+..... ... .. ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHHH
Confidence 66666654 789999999999998 456543 2222211100 000 00 011235
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM----PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~----~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
+.+.|.+.|++++|...+++. |-.| ....|..++.++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677888999999999988887 3233 346888999999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-05 Score=74.88 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=103.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG 589 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 589 (812)
..+-..+...|+.+.++.+..+... ..| |.......+....+.|++.+|...|++... .-.+|...|+.++-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 4455566666777776666665443 222 233344466667777777777777777663 23347777777777777
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 590 RAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
+.|++++|..-|.+. .+.| ++.+.+.|.-.+...|+.+.|+.++.++....+.|+.+-..|+-+....|++++|+.+-
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777666 4455 56677777777777777777777777777777777777777777777777777776654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.9e-06 Score=87.40 Aligned_cols=193 Identities=12% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003531 473 EKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC 552 (812)
Q Consensus 473 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 552 (812)
+|--..-..+.+.+.++|-...|..+|+++ ..|--.|..|...|+..+|..+..+-++ -+||+..|..++...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333334444555555556666666555543 3455555555555555555555555554 345555555555554
Q ss_pred HhcCcHHHHHHHHHHHHHh-------------------------cCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 553 SHSGLVEEGIHYFTSLKKD-------------------------YGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~-------------------------~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
...--+++|+++++..... ..+.| ...+|-.++.+..+.++++.|.+.|... .
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 4444455555544433211 12333 3444555555555555555555555554 4
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 606 IEPGI-TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 606 ~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
..||. ..||.+-.+|.++|+..+|...++++++.+-++..++....-+..+.|.|++|.+.+.++.+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 45543 35666666666666666666666666655554455555444455555666666665555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-05 Score=86.04 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=175.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003531 410 NAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKC 489 (812)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 489 (812)
-.+...+...|-...|+.+|++.. .+..++-.|...|+..+|..+....++ -+|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 346778889999999999998764 477788888999999999998887776 478999999999998888
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003531 490 GAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 490 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
.-+++|.++++....+--..|+-+ ...+++++++.+.|+.-.+ +.| ...||..+..+..+.++++.|.+.|...
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 889999999987754422222222 2347999999999998887 445 4668999998999999999999999988
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 003531 569 KKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIE-PGITVFGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 569 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
. .+.| +...||.+-.+|.+.|+..+|...++++ +.. -+..+|...+-....-|+.++|++++.+++++.-
T Consensus 546 v---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 546 V---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred h---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7 4678 6899999999999999999999999998 332 2455888888888899999999999999988654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-05 Score=74.89 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=112.3
Q ss_pred CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003531 538 TKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGA 615 (812)
Q Consensus 538 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ 615 (812)
..|+......+-.++...|+-+.+..+....... ...|......++....+.|++.+|...+++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3454322266677788888888888877765422 2236667777999999999999999999998 44558899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+..+|-+.|+++.|...+.+++++.|+++.++..|+..|.-.|+.++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999887765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=83.79 Aligned_cols=219 Identities=16% Similarity=0.139 Sum_probs=151.8
Q ss_pred HHhCCChHHHHHHHHhcCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHH
Q 003531 385 YSKCKKVDRAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAK 461 (812)
Q Consensus 385 y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 461 (812)
+.+.|++.+|.-.|+....+|+ ..|--|...-..+++-..|+..+++..+ +.|+..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~Nl------------------- 353 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNL------------------- 353 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccH-------------------
Confidence 5677888888888887776554 5788888888888888888888888776 445522
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hHHHHHHH---------HHHHhCCCHHHHHHHHH
Q 003531 462 WIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH-VTTWNVMI---------DGYGTHGLGKAAVELFN 531 (812)
Q Consensus 462 ~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~ 531 (812)
.+.-+|.-.|...|.-.+|.+.|+.-.... ...|..-. ..+.......+..++|-
T Consensus 354 ---------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fL 418 (579)
T KOG1125|consen 354 ---------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFL 418 (579)
T ss_pred ---------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHH
Confidence 222333333444444444444444332000 00000000 11112223344555665
Q ss_pred HHHh-CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 003531 532 KMLE-GPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP 608 (812)
Q Consensus 532 ~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p 608 (812)
++.. .+-++|......|.-.|--.|.+++|+..|+.... ++| |...||-|+..++...+.+||.+.++++ .++|
T Consensus 419 eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 419 EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 5544 44346666777777778889999999999999884 578 7889999999999999999999999998 8899
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 609 GIT-VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 609 d~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
+-+ ++..|+-+|...|.+++|.+.+-.++.+.+.
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 755 8899999999999999999999999988764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00048 Score=66.54 Aligned_cols=237 Identities=10% Similarity=-0.012 Sum_probs=129.1
Q ss_pred hCCChHHHHHHHhcCCC-CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 003531 286 KCGRVETARLVFDGMKS-RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHK 364 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 364 (812)
..+++..++.+.++.+. .+..+-+...-...+.|++++|++-|+...+-+---....|+..+.. .+.++...|.+...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHH
Confidence 34677777777777773 44455555555556778888888888877765333334556555543 35577778888888
Q ss_pred HHhhcCCCCChhHH----HHHHHHHHhCCCh-HHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhC-CCC
Q 003531 365 LLDQLKLGTDVSMT----NSLISMYSKCKKV-DRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSK-NIK 438 (812)
Q Consensus 365 ~~~~~g~~~~~~~~----~~Li~~y~~~g~~-~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 438 (812)
+++++|+...+... +-.++.-. .|+. ..+..- =+..+|.-...+-+.|+++.|.+.+.+|.-+ .-.
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 88777754322211 00000000 0000 000000 0123444445566778888888888777532 234
Q ss_pred CCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChHHHHHH
Q 003531 439 PDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNER-----HVTTWNVM 513 (812)
Q Consensus 439 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~-----~~~~~~~l 513 (812)
.|++|...+.-. -..+++..+.+-+..+...+. -...++..++-.|+|..-++-|-.++.+-..- +...|+.|
T Consensus 275 lDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL 352 (459)
T KOG4340|consen 275 LDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL 352 (459)
T ss_pred CCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH
Confidence 566776544221 122345555555555555543 33456667777899988888888888765432 33344433
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q 003531 514 IDGYGTHGLGKAAVELFNKM 533 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m 533 (812)
=..-...-.+++|++-++.+
T Consensus 353 daLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 22222344566666555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0013 Score=80.26 Aligned_cols=257 Identities=11% Similarity=-0.013 Sum_probs=125.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHhhcCCC-----CChhHHHHHHHH
Q 003531 314 AYVEGGNPEEAMRIFQKMLDQGVEPTN----VTIMEALHACADLGDLERGIFVHKLLDQLKLG-----TDVSMTNSLISM 384 (812)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~~~~Li~~ 384 (812)
.+...|++++|...+++....-...+. .....+...+...|+++.|...+.......-. ........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 345667777777777776553111111 12233334455667777777776665543111 112233445556
Q ss_pred HHhCCChHHHHHHHHhcCCC-------C----cccHHHHHHHHHHcCChHHHHHHHHHHhhCC--CCCC--cccHHhHHH
Q 003531 385 YSKCKKVDRAADIFSKLQGK-------T----LVSWNAMILGYAQNGRVNEALNYFCKMRSKN--IKPD--SFTMVSVIP 449 (812)
Q Consensus 385 y~~~g~~~~A~~~f~~~~~~-------~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~ 449 (812)
+...|+++.|...+++.... + ...+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 67777777777776553320 1 1123334445566678888877777664421 1111 112222333
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCC--chh----HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------HHHHHHHHH
Q 003531 450 ALAELSVIRYAKWIHALVIRSCFEK--NVF----VMTALIDMYAKCGAVGTARALFDMMNERHV-------TTWNVMIDG 516 (812)
Q Consensus 450 a~~~~~~~~~a~~i~~~~~~~~~~~--~~~----~~~~li~~y~k~g~~~~A~~~~~~m~~~~~-------~~~~~li~~ 516 (812)
.....|+.+.|...+..+....-.. ... .....+..+...|+.+.|.+.+.....+.. ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4455566666666655553321000 000 001112333446666666666655442210 112344455
Q ss_pred HHhCCCHHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 517 YGTHGLGKAAVELFNKMLEG----PTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
+...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665442 22221 12344444555566666666666665553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00011 Score=76.18 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=65.6
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhH-HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPNDIT-FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGR 593 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 593 (812)
.+...|++++|+..++.++. -.||..- .......+...++.++|.+.++++.. ..|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 34445555555555555554 2333332 22333344555555555555555542 3343 3333344555555555
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.++|...++.. .-.| |+..|+.|..+|...|+..++..+. +..|+-.|+|++|........
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence 55555555554 1122 4455555555555555544444332 233445556666665555555
Q ss_pred Hc
Q 003531 672 KK 673 (812)
Q Consensus 672 ~~ 673 (812)
++
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 44
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.2e-05 Score=84.27 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=116.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHH
Q 003531 471 CFEKNVFVMTALIDMYAKCGAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFL 546 (812)
Q Consensus 471 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 546 (812)
.+..+...+-.|.......|..++|..+++... .|| ...+..++..+.+.+++++|+..+++.+. ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 345668888889999999999999999999988 354 56788889999999999999999999999 567755 556
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAML 617 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll 617 (812)
.+..++.+.|.+++|..+|+++... .| +...+..+...+-+.|+.++|...|++. ...|....++.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 6677889999999999999999852 34 4788999999999999999999999988 3344444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00036 Score=80.72 Aligned_cols=224 Identities=17% Similarity=0.184 Sum_probs=151.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC-----cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHH
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD-----SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTA 481 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 481 (812)
..|-..|.-..+.++.++|.+++++.... +.+. ...|.++++.--.-|.-+...++|+++.+.. ....+|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 45666666666667777777776666542 2111 1234444444444445555666666665543 23456788
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHH-HHHHHHhc
Q 003531 482 LIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLC-AISACSHS 555 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~-ll~a~~~~ 555 (812)
|...|.+.++.++|-++|+.|.+ .....|...+..+.++++.+.|.+++.+.++. -|. .+-+.+ .+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 89999999999999999999984 35678999999999999999999999999884 444 333332 23344678
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 003531 556 GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PIEPG--ITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 556 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~pd--~~~~~~ll~~~~~~g~~~~a~ 630 (812)
|+.+.|+.+|+.....| +-..+.|+.++++-.+.|..+.+.++|++. .+.|. -..|.-.+..-..|||-+..+
T Consensus 1614 GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99999999999888653 226778999999999999999999999887 34442 235555555555666655555
Q ss_pred HHHHHHh
Q 003531 631 KAANRLF 637 (812)
Q Consensus 631 ~~~~~~~ 637 (812)
.+=.++.
T Consensus 1692 ~VKarA~ 1698 (1710)
T KOG1070|consen 1692 YVKARAK 1698 (1710)
T ss_pred HHHHHHH
Confidence 5544444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00072 Score=66.71 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=172.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH---HHHHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCc
Q 003531 482 LIDMYAKCGAVGTARALFDMMNERHVTTWNVMI---DGYGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGL 557 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 557 (812)
|...+.-.|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+.++ .+||-. .-..-...+.++|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 445566678899999999888877777766654 467888999999999999988 788844 33334456788999
Q ss_pred HHHHHHHHHHHHHhcCCCCC----hhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003531 558 VEEGIHYFTSLKKDYGIEPV----MDHYG------------AMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGA 619 (812)
Q Consensus 558 ~~~a~~~~~~m~~~~~~~p~----~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~ 619 (812)
+++|..-|+...+. .|+ .+++. ..+..+.-.|+...|++++..+ .+.| |+..+..-...
T Consensus 122 le~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 122 LEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred HHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99999999888753 331 12222 2233455678999999999887 6677 66666666666
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCC
Q 003531 620 CKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTK 699 (812)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~ 699 (812)
|...|++..|+.-++.+-++..|+...+.-++.++...|+.+++....+.-.+.+. .
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp-----------------------d 255 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP-----------------------D 255 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc-----------------------c
Confidence 77889999999999999999999999999999999999999999887776665422 1
Q ss_pred CcchHHHHHHHHHHHHHHHHcCcccCCCCccccchhhhhhhchhccHHHHHHHccccCCCC-CcEEEEeccccc
Q 003531 700 HPQSKRIYTFLETLIDEIKAAGYVPDTNSIHDVEDYVQENLLSSHSEKLAIAFGLLNSSPG-STIHIRKNLRVC 772 (812)
Q Consensus 700 ~~~~~~i~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~~nl~~c 772 (812)
|...---|.+|..+.+.+..+.-. .+ -....+.++..-.++.+.|. .+||+----++|
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~-------------ie--~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQA-------------IE--EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------------Hh--hhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 433334455565555554432110 00 02335666666666766665 677664444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.033 Score=62.52 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCchHHHHHHHHh--hcCCChhHHHHhhccCC---CCChhHHHHHHHHHHhcCCchHHHHHH
Q 003531 52 SLKELRRILPLIIKSGLCDQHLFQTKLVSLF--CKYNSLSDAARVFEPIP---DKLDALYHTMLKGYAKFASLDDAVSFL 126 (812)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 126 (812)
++..|.+..+.+.+..+. ..+...+.++ .+.|+.++|..+++... ..|..+...+-..|.+.+..++|+.+|
T Consensus 24 qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345555566666665533 2333444444 48899999998888653 347778888889999999999999999
Q ss_pred HHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----------ChhHHHHHh
Q 003531 127 IRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCG----------QIEEAYKMF 196 (812)
Q Consensus 127 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g----------~~~~A~~~f 196 (812)
++.... -|+......+..++.+.+++..-.+.--++-+. ++.+++.+=+.++.+...- -+.-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 998764 577778888889999988877655554444443 4555555555565554431 123455555
Q ss_pred ccCCCCC-cc-hHH---HHHHHHHhCCChHHHHHHHH-HHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCC
Q 003531 197 DRMPERD-LV-SWN---TIVAGFAQNGFAELALDLVT-RMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGF 270 (812)
Q Consensus 197 ~~~~~~~-~~-~~~---~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 270 (812)
+.+.+.+ .. +-. .-...+...|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-..++..|.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 5555433 11 111 11123345667777777773 333322222333333445555666667666666666666653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0005 Score=71.58 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=89.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~ 627 (812)
.....|.+++|+..++.+.+. .| |+......++.+.+.|+.++|.+.++++ ...|+ ...|-++..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 445667778888888777643 44 5666667778888888888888888777 55665 567777777888888888
Q ss_pred HHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 628 LGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+|+..++....-+|+|+..|..|+..|...|+..++..-+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888888888888888888888888888888888887777666544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-06 Score=53.67 Aligned_cols=35 Identities=37% Similarity=0.604 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 003531 205 VSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDF 239 (812)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 239 (812)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.4e-05 Score=67.28 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=90.0
Q ss_pred HHHHHHhCCCCCCh-hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 003531 529 LFNKMLEGPTKPND-ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P 605 (812)
Q Consensus 529 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 605 (812)
.|++++. ..|+. .....+...+...|++++|.+.|+.+... .| +...+..++..+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 45643 44666777788899999999999888753 34 6788888999999999999999988887 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 606 IEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 606 ~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 455 56788888888999999999999999999999987553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=63.04 Aligned_cols=162 Identities=15% Similarity=0.187 Sum_probs=119.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 003531 480 TALIDMYAKCGAVGTARALFDMMNE--RH---VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH 554 (812)
Q Consensus 480 ~~li~~y~k~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 554 (812)
..++-+...+|+.+.|...++.+.. |+ +.-..+| -+-..|++++|+++++..++.. +-|.+++.-=+...-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3344455567888888888877652 22 2222222 2445788999999999999864 4456777777777777
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHH
Q 003531 555 SGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK---NVELG 629 (812)
Q Consensus 555 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g---~~~~a 629 (812)
.|+--+|++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -+.| ++..+..+...+...| |++.|
T Consensus 133 ~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888888888887764 5668899999999999999999999999988 4566 5667777777755444 78899
Q ss_pred HHHHHHHhccCCCCccc
Q 003531 630 EKAANRLFELDPDEGGY 646 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~ 646 (812)
.+.+++++++.|.+...
T Consensus 211 rkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHhChHhHHH
Confidence 99999999999965433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.7e-06 Score=53.36 Aligned_cols=35 Identities=43% Similarity=0.746 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCc
Q 003531 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDS 441 (812)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 441 (812)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00047 Score=79.29 Aligned_cols=232 Identities=10% Similarity=0.088 Sum_probs=126.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHH
Q 003531 374 DVSMTNSLISMYSKCKKVDRAADIFSKLQGKT---LVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPA 450 (812)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 450 (812)
+...+..|+..|...+++++|.++.+...+.+ +..|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 45556666666666666666666666443322 22333333355555554444433 2221 1
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHH
Q 003531 451 LAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAV 527 (812)
Q Consensus 451 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 527 (812)
.....++.....+...+.+.+ .+...+-.|..+|-+.|+.++|..+++++.+ .|+...|-+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 112222222222333333322 2333555666666666666666666666652 3455666666666666 666666
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 003531 528 ELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMPI 606 (812)
Q Consensus 528 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 606 (812)
+++.+.+.. +...+++.++.+++.++.. ..| +...+--+...... ..+.
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~------------~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLG------------HREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHh------------hhcc
Confidence 666665542 4444566666666666653 233 22222211111111 1111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhh
Q 003531 607 EPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYA 655 (812)
Q Consensus 607 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 655 (812)
..-..+|--+-.-|...++++++..+++.+++.+|+|..+..-|+..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2223345555566778889999999999999999999888887877775
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.6e-05 Score=77.77 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003531 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKI 622 (812)
Q Consensus 545 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~ 622 (812)
..+++..+...+++++|+++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445677777888999999999998854 355 4455788888888888999998887 3344 56666666666888
Q ss_pred cCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 623 HKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.++++.|+.+++++.++.|++...+..|+.+|...|+|++|......+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=65.06 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=84.6
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhh
Q 003531 573 GIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVL 649 (812)
Q Consensus 573 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 649 (812)
|+.+ +.+..-....-+...|++++|..+|+-+ -..| +...|..|...|...|+++.|+..|..+..++++|+.++.+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 5555 2344444556667899999999999887 3344 56688999999999999999999999999999999999999
Q ss_pred HhhhhhhcCCchHHHHHHHHHHH
Q 003531 650 LANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 650 l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
.+..|...|+.++|+..|....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.5e-05 Score=80.06 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003531 550 SACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNV 626 (812)
Q Consensus 550 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~ 626 (812)
..+...|++++|++.|+++.+ +.| +...|..+..+|.+.|++++|+..++++ .+.| +...|..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 344455555555555555553 233 3444555555555555555555555554 3334 233455555555555555
Q ss_pred HHHHHHHHHHhccCCCCccchhh
Q 003531 627 ELGEKAANRLFELDPDEGGYHVL 649 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~~~~ 649 (812)
++|+..++++++++|+++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 55555555555555555444333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00025 Score=74.70 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcC
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSG 556 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 556 (812)
.-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++. .| |......-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666777889999999999999777666777888888888999999999999874 44 4445555566788999
Q ss_pred cHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 003531 557 LVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEP 608 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 608 (812)
+++.|+.+.+++.+ +.| +..+|..|+.+|.+.|++++|+-.++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999998884 577 56799999999999999999999999997554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0021 Score=74.19 Aligned_cols=261 Identities=10% Similarity=0.035 Sum_probs=167.0
Q ss_pred CCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHH
Q 003531 335 GVEPTN-VTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMI 413 (812)
Q Consensus 335 g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 413 (812)
+..|+. ..+..|+..+...++++.+.++.+...+... .....|-.+...|.+.++.+++..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 344544 4678889999999999999999997666542 2334444444477787877766555 233
Q ss_pred HHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 003531 414 LGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVG 493 (812)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 493 (812)
.......++.-...+...|.+. .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3344444453333344445442 2344577788888999999999999999999987 67889999999999999 999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHH-H--------------------HHHHHH
Q 003531 494 TARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITF-L--------------------CAISAC 552 (812)
Q Consensus 494 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~--------------------~ll~a~ 552 (812)
+|.+++.+. +..|...+++.++.++|.++.. ..|+.+.+ . -+-..|
T Consensus 167 KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 167 KAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 999998775 3447777788889999998888 45654433 1 122344
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGR----AGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH-KNV 626 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~-g~~ 626 (812)
....+++++..+++.+. .+.| |.....-+++.|.. .-++++++++ .+ .... .++
T Consensus 234 ~~~~~~~~~i~iLK~iL---~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~---s~--------------l~~~~~~~ 293 (906)
T PRK14720 234 KALEDWDEVIYILKKIL---EHDNKNNKAREELIRFYKEKYKDHSLLEDYLKM---SD--------------IGNNRKPV 293 (906)
T ss_pred hhhhhhhHHHHHHHHHH---hcCCcchhhHHHHHHHHHHHccCcchHHHHHHH---hc--------------cccCCccH
Confidence 44556666666666665 2344 34444444444431 1112222211 11 1122 355
Q ss_pred HHHHHHHHHHhccCCCCccc
Q 003531 627 ELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~ 646 (812)
..++.-|++.+..+|.+...
T Consensus 294 ~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 294 KDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred HHHHHHHHHHeeecCCCEEE
Confidence 67777888888777765443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.1e-05 Score=72.94 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=49.9
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI-TVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~-~~~~~ll~~~~~~g~~~~a~ 630 (812)
+.+++++|+..|...+ .+.| |+.-|..=..+|.+.|.++.|.+-.+.. .+.|.. -.|..|+-+|.-.|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3444444444444444 2344 3444444444555555555555444444 344432 25666666666666666666
Q ss_pred HHHHHHhccCCCCccchhhH
Q 003531 631 KAANRLFELDPDEGGYHVLL 650 (812)
Q Consensus 631 ~~~~~~~~~~p~~~~~~~~l 650 (812)
+.|+++++++|++..+...|
T Consensus 170 ~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhccCCCcHHHHHHH
Confidence 66667777777665444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=7e-05 Score=72.98 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=80.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchH
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDK 662 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 662 (812)
++-+.+.+++++|...+.++ .+.| |++.|..-..+|.+.|.++.|++..+.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 56677899999999999988 7787 677777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 003531 663 LAKVRTIMEKK 673 (812)
Q Consensus 663 a~~~~~~m~~~ 673 (812)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999877664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00027 Score=64.40 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=22.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHH
Q 003531 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 617 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
...+...|++++|+..++.. .-.+-.+..+..+|++|...|++++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344444444444444331 1122223344455555555555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.008 Score=57.81 Aligned_cols=141 Identities=7% Similarity=-0.020 Sum_probs=96.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----h
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLG----R 590 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~ 590 (812)
..|...|++++|++..+.... ......=...+.+..+.+-|.+.++.|.. +. +-.+.+.|..++. -
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN------LEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 346666777777776665211 11111222334455667777777777763 22 2334444444443 3
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHH
Q 003531 591 AGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAK 665 (812)
Q Consensus 591 ~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 665 (812)
.+.+.+|+-+|++| +..|++.+.+-+...+...|++++|+.+++.++..+|+++.+...+.-.-...|+-.++..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 45788899999998 3678888888888888999999999999999999999999998888877778888776643
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.6e-05 Score=50.69 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=30.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 003531 204 LVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRG 237 (812)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 237 (812)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00023 Score=62.34 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003531 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLG 618 (812)
Q Consensus 545 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~ 618 (812)
+..+...+...|++++|...|..+.+.+.-.| ....+..++.++.+.|++++|.+.++++ ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555556666666666666654321111 1334445666666666666666666655 22232 345666666
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 619 ACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 619 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
.+...|+.+.|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 777777777777777777777776544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.8e-05 Score=50.47 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP 540 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 540 (812)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00065 Score=75.09 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=74.7
Q ss_pred CCChHHHHHHHHHHHh--C---CCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhc--------CcHHHHHHHHHHHH
Q 003531 504 ERHVTTWNVMIDGYGT--H---GLGKAAVELFNKMLEGPTKPND-ITFLCAISACSHS--------GLVEEGIHYFTSLK 569 (812)
Q Consensus 504 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 569 (812)
..|...|...+.|... . +...+|..+|++.++ ..|+. ..|..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4667778777777543 2 236789999999998 67874 3444443333211 11222222222221
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 570 KDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 570 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
.......+...|..+.-.....|++++|...++++ .+.|+...|..++..+...|+.++|...+++++.++|.+++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11011123345555544444556666666666555 44555555555555566666666666666666666665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.8e-05 Score=60.48 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC-CchHHHHHHHHHHHc
Q 003531 609 GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS-MWDKLAKVRTIMEKK 673 (812)
Q Consensus 609 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 673 (812)
++.+|..++..+...|++++|+..|+++++++|+++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999887764
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=63.16 Aligned_cols=96 Identities=15% Similarity=-0.003 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhH
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLL 650 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 650 (812)
.++-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999888 33443 3466778888999999999999999999998875 4568899
Q ss_pred hhhhhhcCCchHHHHHHHHHHHcC
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+.+|.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=60.70 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS 658 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 658 (812)
+..++..+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677777777777777765 3344 34566667777777788888888888888888877777778888888888
Q ss_pred CchHHHHHHHHHHH
Q 003531 659 MWDKLAKVRTIMEK 672 (812)
Q Consensus 659 ~~~~a~~~~~~m~~ 672 (812)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888877776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.001 Score=60.50 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC--hhHHHHH
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPND----ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV--MDHYGAM 584 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l 584 (812)
..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+..... .-.|. ....-.|
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 3344444 366777777777777764 2322 23334455667777777777777777754 22222 1233346
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003531 585 VDLLGRAGRLNEAWDFIQKMPIEP-GITVFGAMLGACKIHKNVELGEKAANRLF 637 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 637 (812)
...+...|++++|+..++..+-.+ .+..+..++..+...|+.++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677777788888888877653222 44566667777788888888888877653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0021 Score=61.15 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL-CAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVD 586 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 586 (812)
.|..++-+....|+.+.|...++++... + |...-.. .-..-+...|.+++|+++++...++ +| |..+|.-=+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3444555666789999999999999885 3 5433221 1222346689999999999999865 46 6777776667
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCc---h
Q 003531 587 LLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMW---D 661 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~ 661 (812)
++-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++-+.|-++..+..|++++...|-. +
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 777788777888777666 45669999999999999999999999999999999999999999999999877754 4
Q ss_pred HHHHHHHHHHHc
Q 003531 662 KLAKVRTIMEKK 673 (812)
Q Consensus 662 ~a~~~~~~m~~~ 673 (812)
-|++++.+..+.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 566777766654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.1e-05 Score=63.89 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHH
Q 003531 592 GRLNEAWDFIQKM-PIEP---GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 592 g~~~eA~~~~~~~-~~~p---d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 667 (812)
|++++|+.+++++ ...| +...|..+...+.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1122 344555566666667777777777766 5666655566666677777777777777766
Q ss_pred HH
Q 003531 668 TI 669 (812)
Q Consensus 668 ~~ 669 (812)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=71.18 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=90.5
Q ss_pred CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-C--CHHHHHHHHHHHhccCCCCccchh
Q 003531 575 EP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIH-K--NVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 575 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
+| |.+.|-.|+..|.+.|+++.|..-|.+. .+.| ++.++..+..++..+ | ...++..+++++++++|+|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 56 8999999999999999999999999888 5555 567888888775443 2 578999999999999999999999
Q ss_pred hHhhhhhhcCCchHHHHHHHHHHHcCCccCC
Q 003531 649 LLANIYAAASMWDKLAKVRTIMEKKGLQKTP 679 (812)
Q Consensus 649 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 679 (812)
.|+-.+...|++.+|...|+.|.+......|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987554333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00031 Score=74.37 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=83.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhh
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGR 590 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 590 (812)
....+...|++++|++.|+++++ ..|+ ...|..+..++...|++++|+..++.+.+ +.| +...|..++.+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 34566788999999999999999 4565 56788888899999999999999999884 566 67889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 003531 591 AGRLNEAWDFIQKM-PIEPGITVFGAMLGAC 620 (812)
Q Consensus 591 ~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~ 620 (812)
.|++++|...++++ .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5667544444444333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.01 Score=57.08 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=77.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH----hcCcHH
Q 003531 484 DMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACS----HSGLVE 559 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 559 (812)
..|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|++- -+..|.+.|..++. ..+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 3455666666666665553222222222 22233444556666666666551 23445554444442 234466
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIEPGITVFGAMLGACKIH-KNVELGEKAANRL 636 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~pd~~~~~~ll~~~~~~-g~~~~a~~~~~~~ 636 (812)
+|.-+|++|..+ ..|+..+.+-+.-+....|+++||..+++++ ....|+.+...++-.-... .+.+.-.+...++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 666666666542 3455555555555555666666666666655 2122344443333332223 3445555666666
Q ss_pred hccCCCCc
Q 003531 637 FELDPDEG 644 (812)
Q Consensus 637 ~~~~p~~~ 644 (812)
....|..+
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 66666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.8e-05 Score=56.78 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 616 MLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 616 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+...+...|++++|+..++++++.+|+++.++..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777788888888888888888888888888888888888888888888877654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=7e-05 Score=47.34 Aligned_cols=31 Identities=32% Similarity=0.643 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 003531 205 VSWNTIVAGFAQNGFAELALDLVTRMHEEGR 235 (812)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (812)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=62.36 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 003531 506 HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYG 582 (812)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 582 (812)
....+..+...|...|++++|+..|++.++....++ ...+..+...+.+.|++++|...+.+..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344677777778888888888888888877433332 24677777778888888888888887774 344 456666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCC
Q 003531 583 AMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 583 ~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 659 (812)
.++.+|...|+...|..-++.+ ...++.|...++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777766655433322 122677889999999999976 4444444444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.3e-05 Score=47.26 Aligned_cols=31 Identities=39% Similarity=0.789 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 003531 306 VSWNSMIAAYVEGGNPEEAMRIFQKMLDQGV 336 (812)
Q Consensus 306 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 336 (812)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00036 Score=65.48 Aligned_cols=94 Identities=10% Similarity=-0.165 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
....|..++..+...|++++|...+++. .+.|+ ..+|..+...+...|++++|+..++++++++|+....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455667777777888888888888777 33333 347888888999999999999999999999999888888888
Q ss_pred hhhh-------hcCCchHHHHHHHHH
Q 003531 652 NIYA-------AASMWDKLAKVRTIM 670 (812)
Q Consensus 652 ~~~~-------~~g~~~~a~~~~~~m 670 (812)
.+|. ..|++++|...++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888766666544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0034 Score=63.92 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=74.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcC
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEPG-----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAAS 658 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~-~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 658 (812)
++...+.|++.+|.+.+.+. .+.|+ +..|.....+..+.|+.++|+.-.+++++++|.-...|..-++.|...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999887 55554 3445555566778999999999999999999988888999999999999
Q ss_pred CchHHHHHHHHHHHc
Q 003531 659 MWDKLAKVRTIMEKK 673 (812)
Q Consensus 659 ~~~~a~~~~~~m~~~ 673 (812)
+|++|.+-++...+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0005 Score=64.78 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhh
Q 003531 578 MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLAN 652 (812)
Q Consensus 578 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 652 (812)
...+..++..+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445566666666777777777777665 22222 3567777788888888888888888888888888888888888
Q ss_pred hhhhcCC
Q 003531 653 IYAAASM 659 (812)
Q Consensus 653 ~~~~~g~ 659 (812)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877766
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=54.19 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=50.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
++..+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5567 456888999999999999999999999999999864
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00014 Score=56.27 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
...|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888766654
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.14 Score=52.22 Aligned_cols=241 Identities=17% Similarity=0.129 Sum_probs=161.1
Q ss_pred HcCChHHHHHHHHHHhhCCCCCC--cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003531 418 QNGRVNEALNYFCKMRSKNIKPD--SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTA 495 (812)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 495 (812)
-.|++++|.+-|+-|... |. ..-+..|.-...+.|+.+.+.++-+..-..- +.-.-.+.+++...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357888888888888752 21 1122233333456777777777766655432 12234567788889999999999
Q ss_pred HHHHHhcC-----CCChH--HHHHHHHHHH---hCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHH
Q 003531 496 RALFDMMN-----ERHVT--TWNVMIDGYG---THGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHY 564 (812)
Q Consensus 496 ~~~~~~m~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 564 (812)
+++.+.-. ++|+. .-..|+.+-+ -.-+...|...-.+..+ +.||-+ .-.....++.+.|++.+|-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 99998655 45543 2233333322 23467778777777776 788855 445566788999999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 565 FTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM----PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 565 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
++.+=+ ..|.+.++.. ..+.|.|+.. ++-+++. .++|| ..+..+...+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 998864 4666655533 3445666532 2222222 45675 446666777788899999999999999999
Q ss_pred CCCCccchhhHhhhhhhc-CCchHHHHHHHHHHH
Q 003531 640 DPDEGGYHVLLANIYAAA-SMWDKLAKVRTIMEK 672 (812)
Q Consensus 640 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 672 (812)
.|. ..+|.+|+++-... |+-.+++.+..+..+
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 995 67889999997555 888888777655543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0018 Score=53.39 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=43.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~ 627 (812)
.+...|++++|..+++...+. .| +...+..++..+...|++++|.+.+++. ...| +..+|..+...+...|+.+
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444321 12 2233444444455555555555555443 2222 2345555666666666666
Q ss_pred HHHHHHHHHhccCC
Q 003531 628 LGEKAANRLFELDP 641 (812)
Q Consensus 628 ~a~~~~~~~~~~~p 641 (812)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 67666666666655
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0048 Score=57.80 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 507 VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|+.++|+..++...+ +.| ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44667777777788888888888888876432221 23677777788888888888888877764 344 3455556
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 584 MVDLLG-------RAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 584 li~~~~-------~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
++..+. +.|++++|... +++|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 666665 33333333322 446677788888888854
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0044 Score=63.27 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH-HHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA-CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVD 586 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 586 (812)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998642 2234445544444 3446777779999999988743 46677889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 587 LLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.-=.++|+.+...++.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 32333 249999999999999999999999999998887543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0003 Score=54.56 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK-NVELGEKAANRLFELDP 641 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 641 (812)
++..|..++..+.+.|++++|+..|++. .+.| +..+|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567777888888888888888888777 5556 4568888888899998 79999999999999988
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.28 Score=50.73 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHH
Q 003531 480 TALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVE 559 (812)
Q Consensus 480 ~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 559 (812)
+..|.-+...|+...|.++-.+-.-||-.-|-..+.+|+..+++++-.++... +-.++-|-..+.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566678888888888888888888898999999999998876665432 224578888888888889888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGAC 620 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~ 620 (812)
+|..+...+. +..-+.+|.++|.+.+|.+.--+.. |...+..+..-|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 8888776521 2446778888999888877755542 444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00073 Score=54.80 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTK-PNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEA 597 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA 597 (812)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...| +....-.++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777663211 1233444466666777777777776665 2 1222 223333446666666666666
Q ss_pred HHHHHh
Q 003531 598 WDFIQK 603 (812)
Q Consensus 598 ~~~~~~ 603 (812)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.37 Score=51.40 Aligned_cols=210 Identities=15% Similarity=0.117 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CChHHHHHHHHHHHhCCCHHHHHHHH
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCG---AVGTARALFDMMNE----RHVTTWNVMIDGYGTHGLGKAAVELF 530 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (812)
+++..+++..+..-...+..+|.++.+---..- ..+.....+++... .-..+|-.+++.-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455566665555443445555554443211111 23444455555441 22346777777777777789999999
Q ss_pred HHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CC
Q 003531 531 NKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PI 606 (812)
Q Consensus 531 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~ 606 (812)
.+..+.+..+- .....+++. |--.++.+-|..+|+.=.+.+|-.| .--.+.++-+.+.|+-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999888883 445555554 4456889999999998777765444 44567788899999999999999998 24
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----cchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 607 EPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG----GYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 607 ~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
.|| ..+|..++.--..-||+....++-++....-|.+. ..-.++.+-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 554 45999999999999999999999988876555221 12345666777777776555544444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.55 Score=53.23 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=70.6
Q ss_pred cCCChhHHHHhhccCCC--CChhHHHHHHHHH--HhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHH
Q 003531 84 KYNSLSDAARVFEPIPD--KLDALYHTMLKGY--AKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKE 159 (812)
Q Consensus 84 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 159 (812)
..+++..|....+++.. ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 34566666666655422 332 344445543 4567777777666666544433 55566666666667777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChh----HHHHHhccCCCCCcchHHHH
Q 003531 160 IHGQLIVNGFSLDLFAMTGVVNMYAKCGQIE----EAYKMFDRMPERDLVSWNTI 210 (812)
Q Consensus 160 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~l 210 (812)
++++..... |+......+-.+|.+.+++. .|.+++...+++--.-|+.+
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 777766553 44555556666666655443 35556665555444455543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00063 Score=53.43 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 618 GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 618 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..+...++++.|.++++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778888999999999999999988888888999999999999999988888765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00025 Score=54.85 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=29.1
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~ 611 (812)
..|++++|+++|+.+... .| +...+..++.+|.+.|++++|.++++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 455666666666665543 33 4455555555555555555555555555 3344433
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00011 Score=47.27 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCccchhhHhhhhhhcCCchHHH
Q 003531 632 AANRLFELDPDEGGYHVLLANIYAAASMWDKLA 664 (812)
Q Consensus 632 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 664 (812)
+++++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.027 Score=51.05 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=97.8
Q ss_pred CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-----CCCCH
Q 003531 538 TKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-P-----IEPGI 610 (812)
Q Consensus 538 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-----~~pd~ 610 (812)
..|....-..|..+....|+..||...|++... |+-. |....-.+..+....++..+|...+++. . -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777888888888888888887763 5544 6677777778888888888888888776 2 23443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
-..+...+...|.+++|+..|+.++.--|+ +..-...+..+.++|+.+++..-...+.+
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344667788899999999999999998884 67777788899999999988765554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0076 Score=66.78 Aligned_cols=134 Identities=10% Similarity=-0.000 Sum_probs=99.7
Q ss_pred CCCChhHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHh
Q 003531 538 TKPNDITFLCAISACSHS-----GLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRA--------GRLNEAWDFIQK 603 (812)
Q Consensus 538 ~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~~~~~ 603 (812)
.+.|...|...+.+.... +..++|..+|++..+ ++|+ ...|..+..++... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 456777888888876543 337789999999884 5784 55666554444321 234455555555
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 604 M---P-IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 604 ~---~-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
. + ...++.++.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|...+++......
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 2 223567788777777778999999999999999999 578999999999999999999999998877643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.06 Score=55.20 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C--CHHHHHHHHH---HHHh
Q 003531 556 GLVEEGIHYFTSLKKDYGIEPV----MDHYGAMVDLLGRAGRLNEAWDFIQKMP---IE-P--GITVFGAMLG---ACKI 622 (812)
Q Consensus 556 g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~-p--d~~~~~~ll~---~~~~ 622 (812)
|++++|+++|++....+.-... ...+..++..+.+.|++++|.++|++.. .. | ...+-..++. .+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5555555555554433221111 3345566777888888888888887761 11 1 1111112222 3445
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 003531 623 HKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
.||...|.+.+++....+|.-.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTST
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 6899999999999998888543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.69 Score=50.74 Aligned_cols=201 Identities=13% Similarity=0.108 Sum_probs=113.7
Q ss_pred CCCcchHHHHHHHhcCcCChHHHHHHHHHHHHh-CC--------CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcc
Q 003531 135 APVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVN-GF--------SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLV 205 (812)
Q Consensus 135 ~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g~--------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 205 (812)
.|-+..|..+.......-+++.|+..|-+.... |+ -.+.....+=|.+| .|.+++|++++-.|.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 456666666665555555555555544332111 11 11111222223333 38899999999988887763
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----cchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003531 206 SWNTIVAGFAQNGFAELALDLVTRMHEEGRRGD----FITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALV 281 (812)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 281 (812)
|..+.+-|++-...++++. -|-..| ...|..+-..++....|+.|.+.+.+.-.. ..++
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 5666777777766666542 111111 134555666666666677777666543211 2355
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHH
Q 003531 282 DMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIF 361 (812)
Q Consensus 282 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 361 (812)
++|.+..++++-+.+-..+++ |....-.|...+...|..++|.+.|-+-- .| -..+.+|...+++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655 44455667778888888888877764431 11 134556666667666665
Q ss_pred HHH
Q 003531 362 VHK 364 (812)
Q Consensus 362 i~~ 364 (812)
+-+
T Consensus 900 laq 902 (1189)
T KOG2041|consen 900 LAQ 902 (1189)
T ss_pred HHH
Confidence 543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0038 Score=62.56 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhh
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLAN 652 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 652 (812)
|..-+..+.+.|++++|...|+.. ...|+ +..+.-++.++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555555444 12222 1233445555666666666666666666655553 334444566
Q ss_pred hhhhcCCchHHHHHHHHHHHc
Q 003531 653 IYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 653 ~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+|...|++++|.++++...+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=65.53 Aligned_cols=129 Identities=11% Similarity=0.035 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHH---HHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 003531 544 TFLCAISACSHSGLVEEGIHYFTS---LKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-------PI-EPGIT 611 (812)
Q Consensus 544 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~-~pd~~ 611 (812)
.|..|.+.|.-.|+++.|+..++. +.+.+|-.. ....+..+.+++.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666777889999887764 334555544 3567888888999999999998888765 11 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC----C--CCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELD----P--DEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+..+|.+.|....+++.|+.++.+-+.+. . .....+..|+++|...|..+.|....+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77889999998889999999888766532 1 2245678899999999999988877665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=52.65 Aligned_cols=87 Identities=10% Similarity=-0.064 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEGPTKPND-ITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLG 589 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 589 (812)
++..-+.+.|++++|.++|+-+.. +.|.. .-|..|..+|-..|++++|+..|..... +.| |+..+-.++.++.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHH
Confidence 333444455555555555555555 34432 2334444444555555555555555442 233 3444444455555
Q ss_pred hcCCHHHHHHHHHh
Q 003531 590 RAGRLNEAWDFIQK 603 (812)
Q Consensus 590 ~~g~~~eA~~~~~~ 603 (812)
..|+.++|.+-|+.
T Consensus 115 ~lG~~~~A~~aF~~ 128 (157)
T PRK15363 115 ACDNVCYAIKALKA 128 (157)
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.02 Score=51.88 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-
Q 003531 567 SLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM---PIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPD- 642 (812)
Q Consensus 567 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 642 (812)
+..++..+.|++.+--.|...+.+.|+..||...|++. .+.-|......+..+....++...|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 44445567898888889999999999999999999988 45568889999999999999999999999999999885
Q ss_pred -CccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 643 -EGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 643 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+.....++..|...|++.+|+.-|+.....
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4567788999999999999999999988765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.014 Score=50.44 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=68.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLG 589 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 589 (812)
+..++-..|+.++|+.+|++.+..|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677888999999999999999887665 34677888899999999999999998886643222 2223333455778
Q ss_pred hcCCHHHHHHHHHh
Q 003531 590 RAGRLNEAWDFIQK 603 (812)
Q Consensus 590 ~~g~~~eA~~~~~~ 603 (812)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.89 Score=49.93 Aligned_cols=269 Identities=15% Similarity=0.119 Sum_probs=115.7
Q ss_pred HHHHHhCCChHHHHHHHhcCCCC-----CchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 003531 281 VDMYAKCGRVETARLVFDGMKSR-----NVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGD 355 (812)
Q Consensus 281 i~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 355 (812)
|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..-... ...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 34444555555555544432211 1234555555555555555555555442210 112222222222
Q ss_pred hHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhC
Q 003531 356 LERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSK 435 (812)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (812)
+++-+.+.. .++.+....-.+.+|+.+.|.-++|.+.|-+-..+. +-+..|...+++.+|.++-+...-
T Consensus 838 f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l- 906 (1189)
T KOG2041|consen 838 FGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL- 906 (1189)
T ss_pred hhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc-
Confidence 222221111 223444555556666666666666666554443321 233445555566666655544321
Q ss_pred CCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH---HHHH
Q 003531 436 NIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERHVT---TWNV 512 (812)
Q Consensus 436 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~---~~~~ 512 (812)
|...| +|.- .+-++++ +.. ..--|.++-+.|+.-+|.+++.+|.++... .|.-
T Consensus 907 ---~qv~t---liak--------~aaqll~---~~~-------~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 907 ---PQVQT---LIAK--------QAAQLLA---DAN-------HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred ---hhHHH---HHHH--------HHHHHHh---hcc-------hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 21111 1110 1111111 110 011256677888877777777777632111 1111
Q ss_pred HHHHH----HhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 003531 513 MIDGY----GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL 588 (812)
Q Consensus 513 li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 588 (812)
+=..| .-..+..++++-.++....|...|... +...|...++-.+.+..=+ -..+.|+-.|..--
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrq 1031 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQ 1031 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHH
Confidence 10111 111223344444444444443333221 1223333333333332110 12345555666666
Q ss_pred hhcCCHHHHHHHHHhC
Q 003531 589 GRAGRLNEAWDFIQKM 604 (812)
Q Consensus 589 ~~~g~~~eA~~~~~~~ 604 (812)
...|+.+.|++---.+
T Consensus 1032 l~eg~v~~Al~Tal~L 1047 (1189)
T KOG2041|consen 1032 LFEGRVKDALQTALIL 1047 (1189)
T ss_pred HHhchHHHHHHHHhhh
Confidence 6788888887654333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.66 Score=48.02 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=81.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccH
Q 003531 378 TNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVI 457 (812)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 457 (812)
.+.-|.-+...|+...|.++-.+..-++-.-|-..|.+|+..++|++-.++-.. +-.++-|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667788889999998888888888899999999999999877665432 22457888889999988888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003531 458 RYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 458 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 501 (812)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8887776552 135668889999999988766433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.66 Score=47.57 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-----h-hHHHHHHHHHHhcCcHHHHHHHHHHHHHhc-CCCCC--hhHH
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-----D-ITFLCAISACSHSGLVEEGIHYFTSLKKDY-GIEPV--MDHY 581 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~~ 581 (812)
..+...+.+.|++++|+++|++....-...+ . ..|...+-++...|++..|...|++..... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 4456777888888888888888776432211 1 123334445666788888888888776321 22222 3344
Q ss_pred HHHHHHHhh--cCCHHHHHHHHHhC
Q 003531 582 GAMVDLLGR--AGRLNEAWDFIQKM 604 (812)
Q Consensus 582 ~~li~~~~~--~g~~~eA~~~~~~~ 604 (812)
..|++++-. ...+++|..-|+.+
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccc
Confidence 455555543 33567777777776
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0022 Score=50.25 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchh
Q 003531 586 DLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHV 648 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 648 (812)
.+|.+.+++++|.+.++++ ...| ++..|......+...|+++.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677888888888888887 5566 5567888888889999999999999999999998765543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.009 Score=61.30 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEE
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEV 690 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 690 (812)
.++..|...|.+.+++..|+....++++++|+|.-.++.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 355666667788999999999999999999999999999999999999999999999999875
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003531 691 HSFYSGSTKHPQSKRIYTFLETLIDEIKA 719 (812)
Q Consensus 691 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 719 (812)
.|.++.|...|..|..++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 57778888777777776654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=62.29 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 003531 208 NTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKC 287 (812)
Q Consensus 208 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 287 (812)
.++|+.|.+.|..++++.+++.=...|+-||.+||+.+|+.+.+.|++..|.++...|...+.-.+..++..-+..+.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 35555555555555555555555555555555555555555555555555555555555544444444433333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.29 Score=53.06 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=89.4
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhh
Q 003531 263 GYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVT 342 (812)
Q Consensus 263 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 342 (812)
+.+.+.|-.|+... +.+.++-.|++.+|.++|.+ +|.-..|+++|..|+--
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF-------- 674 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF-------- 674 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH--------
Confidence 34555665565443 34445566888888887754 45556666666665421
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCh
Q 003531 343 IMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRV 422 (812)
Q Consensus 343 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 422 (812)
-..+-+...|+-++-+.+...-.+. .-+..--.+...++...|+.++|..+. ..+|-.
T Consensus 675 --D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~ 732 (1081)
T KOG1538|consen 675 --DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWV 732 (1081)
T ss_pred --HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHH
Confidence 1112222233333222222111110 001111123445566666666665542 333444
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003531 423 NEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMM 502 (812)
Q Consensus 423 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m 502 (812)
+-+.++-+++-. .+..+...+..-+-+...+..|.+||..+-. ..+++++....+++.+|..+-++.
T Consensus 733 d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 733 DMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 444444444322 2233344444444455556666666665532 235677777888888888888877
Q ss_pred CC
Q 003531 503 NE 504 (812)
Q Consensus 503 ~~ 504 (812)
++
T Consensus 800 Pe 801 (1081)
T KOG1538|consen 800 PE 801 (1081)
T ss_pred cc
Confidence 74
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0031 Score=66.19 Aligned_cols=63 Identities=8% Similarity=0.031 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 003531 577 VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGI----TVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 577 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
+...++.++.+|.+.|++++|...|++. .+.|+. ..|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555555666666666666665553 445542 23555555556666666666666666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0019 Score=44.68 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhh
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLAN 652 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 652 (812)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999988877764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.1 Score=51.98 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=38.2
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCccc------HHHHHHHHHHcCChHHHHHHHHHHhhCC
Q 003531 381 LISMYSKCKKVDRAADIFSKLQGKTLVS------WNAMILGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 381 Li~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
....+.+.|++++|.+.|+++....+.+ .-.++.+|.+.+++++|...|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444566788888888888876543321 2235566778888888888888887753
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.019 Score=57.57 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=56.3
Q ss_pred HhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCH
Q 003531 553 SHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG----ITVFGAMLGACKIHKNV 626 (812)
Q Consensus 553 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~ 626 (812)
...|++++|...|+.+.+.|.-.+ ....+-.++..|...|++++|...|+++ ...|+ ...|..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444666666666666665432221 1234555666666666666666666665 11222 33555566667788888
Q ss_pred HHHHHHHHHHhccCCCCc
Q 003531 627 ELGEKAANRLFELDPDEG 644 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~ 644 (812)
+.|...++++++..|+..
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 889999988888888654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.69 Score=45.28 Aligned_cols=194 Identities=18% Similarity=0.140 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMN-----ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAIS 550 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 550 (812)
..........+...+.+..+...+.... ......+..+...+...+++.++.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3455566666777777777777766653 2344556666666777777788888888777643222 122222222
Q ss_pred -HHHhcCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 003531 551 -ACSHSGLVEEGIHYFTSLKKDYGIEP----VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG--ITVFGAMLGACKI 622 (812)
Q Consensus 551 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd--~~~~~~ll~~~~~ 622 (812)
++...|+++++...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888887743 222 3344444445566778888888888776 33333 5677777777888
Q ss_pred cCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 623 HKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.++.+.|...+.++++..|+....+..++..+...|.++++...+....+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888865556667777777667788887777766654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.70 E-value=1 Score=47.17 Aligned_cols=353 Identities=12% Similarity=0.124 Sum_probs=176.4
Q ss_pred HhHHHHHhccCChHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhC
Q 003531 243 VSILPAVANVGSLRIGKAVHGYAMRAGFD----SIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEG 318 (812)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 318 (812)
...+..+...|++.+|+.++..++..-++ -+..+|+.++-++++.=-++ +-+.+...=..-|.-||-.|.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHH
Confidence 34455667788888888887777665443 67778888777776532111 11112211223355566555443
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CChHHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhCCChHHHH
Q 003531 319 GNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADL--GDLERGIFVHKLLDQLKLGTDVS-MTNSLISMYSKCKKVDRAA 395 (812)
Q Consensus 319 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~ 395 (812)
=..-++ ---..+.|....+..++....-. ..+.--.+++..-.+.-+.|+-. +...|+.-+.+ +.+++.
T Consensus 208 i~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 208 IHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 111110 00001233333333343332221 12233334444444444455422 23344444444 333333
Q ss_pred HHHHhc--------CCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHH-------hHHHHHh-ccc---c
Q 003531 396 DIFSKL--------QGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMV-------SVIPALA-ELS---V 456 (812)
Q Consensus 396 ~~f~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~a~~-~~~---~ 456 (812)
.+-+.+ .++=+.++..++...++.++..+|.+.+.-+.. +.|+...-. .+-+..+ .-. +
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tk 357 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTK 357 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHH
Confidence 333222 222345678888888999999999888876654 334432111 1111111 111 1
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHH---HHHhcCC-HHHHHHHHHhcC---CCChHHHHHHH----HHHHh---CCC
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALID---MYAKCGA-VGTARALFDMMN---ERHVTTWNVMI----DGYGT---HGL 522 (812)
Q Consensus 457 ~~~a~~i~~~~~~~~~~~~~~~~~~li~---~y~k~g~-~~~A~~~~~~m~---~~~~~~~~~li----~~~~~---~g~ 522 (812)
+..-..+|+.+....+..-. ...-|+. -+=+.|. -++|.++++.+. .-|...-|... .+|.+ ...
T Consensus 358 lr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 358 LRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22223334444433332211 1111221 1223344 777888887766 23444333322 22322 122
Q ss_pred HHHHHHHHHHHHhCCCCCChh----HHHHHHH--HHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 003531 523 GKAAVELFNKMLEGPTKPNDI----TFLCAIS--ACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE 596 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~----t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 596 (812)
..+-+.+-+-..+.|+.|-.+ .-+.+.. -+...|++.++.-+-.-+. .+.|++.+|..++-.+....+++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 333444444445667777322 2222322 3456788888766554444 478888899888888888889999
Q ss_pred HHHHHHhCCCCCCHHHHHH
Q 003531 597 AWDFIQKMPIEPGITVFGA 615 (812)
Q Consensus 597 A~~~~~~~~~~pd~~~~~~ 615 (812)
|.+++.++| |+..+|++
T Consensus 514 A~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhCC--CchhhHHH
Confidence 999998885 56666655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.026 Score=60.06 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=63.0
Q ss_pred CCCcccHHhHHHHHhccccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHH
Q 003531 438 KPDSFTMVSVIPALAELSVIRYAKWIHALVIRS--CFEKNVFVMTALIDMYAKCGAVGTARALFDMMN----ERHVTTWN 511 (812)
Q Consensus 438 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~~~ 511 (812)
+.+.+.+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..++|.+++..=. -||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555555555555555555554444332 111122233455666666666666665555433 25556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 003531 512 VMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS 555 (812)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 555 (812)
.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666666555555556665555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.21 Score=48.15 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhCC-----CCchhHHHHHH
Q 003531 409 WNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCF-----EKNVFVMTALI 483 (812)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-----~~~~~~~~~li 483 (812)
-+.++..+.-.|.+.-.+.++++.++...+-+......+.+...+.|+.+.+...++.+.+..- ..+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4566666777788888888888888866556667777777777888888888888887766433 33333333334
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHH
Q 003531 484 DMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFL 546 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 546 (812)
..|.-..++.+|...|+++.. .|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 456667788888888887773 4555555544445557888899999998888 556555444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.015 Score=50.19 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=49.9
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CccchhhHhhhhhhc
Q 003531 586 DLLGRAGRLNEAWDFIQKM---PIEPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPD---EGGYHVLLANIYAAA 657 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~---~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 657 (812)
.++-..|+.++|..++++. ++... ...+-.+.+.++..|++++|+.++++.++-.|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3344455555555555544 11111 124445666677777777777777777776666 455556666677777
Q ss_pred CCchHHHHHHHH
Q 003531 658 SMWDKLAKVRTI 669 (812)
Q Consensus 658 g~~~~a~~~~~~ 669 (812)
|+++||.+.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 777777766543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.02 Score=47.57 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhHhCCC-CCCcchHHHHHHHhcCcC--------ChHHHHHHHHHHHHhCCCCChhHH
Q 003531 106 YHTMLKGYAKFASLDDAVSFLIRMRYDDV-APVVYNYTYLLKVCGDVG--------EIRRGKEIHGQLIVNGFSLDLFAM 176 (812)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~l~~~~~~~g~~~~~~~~ 176 (812)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777999999999999999999 999999999999887653 244567788999999999999999
Q ss_pred HHHHHHHHh
Q 003531 177 TGVVNMYAK 185 (812)
Q Consensus 177 ~~Li~~y~~ 185 (812)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.48 Score=51.44 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=7.1
Q ss_pred CcchHHHHHH
Q 003531 203 DLVSWNTIVA 212 (812)
Q Consensus 203 ~~~~~~~li~ 212 (812)
+.++||+...
T Consensus 498 nSV~wNT~~E 507 (1081)
T KOG1538|consen 498 NSVAWNTQCE 507 (1081)
T ss_pred ceEEeecccc
Confidence 6678988653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.18 Score=50.22 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CCh-HH---HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHH
Q 003531 481 ALIDMYAKCGAVGTARALFDMMNE--RHV-TT---WNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISAC 552 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~ 552 (812)
.....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...|++.++. .|+ ...+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344455667888888888888763 322 12 233556677888888888888888873 343 33444444443
Q ss_pred Hh--cC---------------c---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 003531 553 SH--SG---------------L---VEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITV 612 (812)
Q Consensus 553 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~ 612 (812)
+. .+ + ..+|...|+.+++. |-...-..+|...+..+. +...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~---~~la 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLK---DRLA 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHH---HHHH
Confidence 32 11 1 12333444444433 222333344444333331 1010
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 613 F--GAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 613 ~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
- -....-|.+.|++.-|..-++.+++--|+. ..+...+.++|...|..++|..+.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 123344788899999999999999987754 3567788999999999999999887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.9 Score=48.12 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=68.2
Q ss_pred cCCCCCcchHHh-----HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---ChHHHHHHHhcCCC--
Q 003531 233 EGRRGDFITIVS-----ILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCG---RVETARLVFDGMKS-- 302 (812)
Q Consensus 233 ~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~-- 302 (812)
-|+..+..-|.. +++-+...+.+..|.++-..+...-... ..++.....-+.+.. +-+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 455555444433 4455555666666666655543211111 455566666666552 22233344444444
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCC----CCChhhHHHHHHHHhccCChHHHHHHHHHHh
Q 003531 303 RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGV----EPTNVTIMEALHACADLGDLERGIFVHKLLD 367 (812)
Q Consensus 303 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 367 (812)
..-++|..+..-..+.|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...++.-++.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4556777777777788888888777653111110 0111123344455555566555555544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.3 Score=50.99 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=101.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---C----hHHHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 482 LIDMYAKCGAVGTARALFDMMNER---H----VTTWNVMIDGYGT---HGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 482 li~~y~k~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
++-.|-...+++.-.++.+.+... + ...-....-++-+ .|+.++|++++..++...-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333477777777777777777642 1 1122223344555 78888999988886666667777788777765
Q ss_pred HHh---------cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH----HHHHH---Hh-C----CCCCCH
Q 003531 552 CSH---------SGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE----AWDFI---QK-M----PIEPGI 610 (812)
Q Consensus 552 ~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e----A~~~~---~~-~----~~~pd~ 610 (812)
|-. ...+++|+..|.+. +.+.|+..+--.++.++..+|...+ ..++- .. . ...+..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 522 22467777777654 4566766555555555666664222 22222 11 1 123333
Q ss_pred H--HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 611 T--VFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 611 ~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
. ...+++.++...||.+.|.+++++++++.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3 44788999999999999999999999998854
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.012 Score=49.93 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=74.3
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----cchhhHhhhhhhcCC
Q 003531 586 DLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG----GYHVLLANIYAAASM 659 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 659 (812)
-+++..|++++|++.|.+. .+-| .+..||.-..+++.+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567889999999998876 4444 677899999999999999999999999999764332 368888999999999
Q ss_pred chHHHHHHHHHHHcCC
Q 003531 660 WDKLAKVRTIMEKKGL 675 (812)
Q Consensus 660 ~~~a~~~~~~m~~~g~ 675 (812)
-+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999888764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.35 Score=46.69 Aligned_cols=233 Identities=10% Similarity=0.009 Sum_probs=133.9
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHH-hcccc-HH-HHHHHHHHHHHh-CCCCchhHHHHHH
Q 003531 408 SWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPAL-AELSV-IR-YAKWIHALVIRS-CFEKNVFVMTALI 483 (812)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~~~-~~-~a~~i~~~~~~~-~~~~~~~~~~~li 483 (812)
.|+.-+..+++....++|..-+....+-. .||- -|...-..+ .+.|. +. ..+.+|..+.+. |.+ +++|+
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp-----qesLd 143 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP-----QESLD 143 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCC-Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHhcCCc-----HHHHH
Confidence 45555666666666666655544443321 1211 000000000 11221 11 233445555442 322 56666
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--ChH--------HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003531 484 DMYAKCGAVGTARALFDMMNER--HVT--------TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACS 553 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 553 (812)
..|.-..-+++-...|+.-..| .+. .-+.++..+.-+|.+.-.+.++++.++...+-+......+.+.-.
T Consensus 144 Rl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M 223 (366)
T KOG2796|consen 144 RLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM 223 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 6666555555555555544322 222 335566666667788888899999998654556777788888888
Q ss_pred hcCcHHHHHHHHHHHHHhc----CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHH
Q 003531 554 HSGLVEEGIHYFTSLKKDY----GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPI-EP-GITVFGAMLGACKIHKNVE 627 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~-~p-d~~~~~~ll~~~~~~g~~~ 627 (812)
+.|+.+.|..+|+...+.. ++.-..-+...+...|.-++++.+|...+.+.+. .| |++..|.-.-...-.|+..
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 9999999999999776543 2333333344444556667788888888877742 23 3333333322333457888
Q ss_pred HHHHHHHHHhccCCCCccch
Q 003531 628 LGEKAANRLFELDPDEGGYH 647 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~~~~ 647 (812)
.|++..+.+.+..|.....-
T Consensus 304 DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHhccCCccchhh
Confidence 88888888888888654433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.038 Score=45.94 Aligned_cols=79 Identities=10% Similarity=-0.008 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCcchHHhHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 003531 208 NTIVAGFAQNGFAELALDLVTRMHEEGR-RGDFITIVSILPAVANVG--------SLRIGKAVHGYAMRAGFDSIVNVST 278 (812)
Q Consensus 208 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 278 (812)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999987654 2345677888888888999999998
Q ss_pred HHHHHHHh
Q 003531 279 ALVDMYAK 286 (812)
Q Consensus 279 ~li~~y~~ 286 (812)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.081 Score=54.06 Aligned_cols=125 Identities=14% Similarity=0.011 Sum_probs=64.0
Q ss_pred HHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHh
Q 003531 444 MVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAK-CGAVGTARALFDMMN---ERHVTTWNVMIDGYGT 519 (812)
Q Consensus 444 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k-~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 519 (812)
|..++..+-+.+..+.|+.+|..+.+.+ ..+..+|-....+-.+ .++.+.|.++|+... ..+...|...+.-+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4445555555555566666665555332 1122233333333222 344444666666655 3455566666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCh---hHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003531 520 HGLGKAAVELFNKMLEGPTKPND---ITFLCAISACSHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 570 (812)
.|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+++....+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666653 22222 2555555555666666666666666554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.1 Score=55.23 Aligned_cols=142 Identities=8% Similarity=0.092 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHh-CCCCCChh-HHHHHHHHHHh---------cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 003531 522 LGKAAVELFNKMLE-GPTKPNDI-TFLCAISACSH---------SGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLG 589 (812)
Q Consensus 522 ~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 589 (812)
..+.|+.+|.+.+. +.+.|+-. .|..+..++.. .....+|.+.-+... .+.| |+.....++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 35678888998882 23677643 44433332211 223445555555554 5667 7888888888888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhh--HhhhhhhcCCchHHHH
Q 003531 590 RAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVL--LANIYAAASMWDKLAK 665 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~ 665 (812)
-.|+++.|..+|+++ .+.|| +.+|....+.+...|+.++|.+.++++++++|....+-+. ..++|...+ .++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 889999999999998 67786 5588888888899999999999999999999976554333 334566554 455555
Q ss_pred HH
Q 003531 666 VR 667 (812)
Q Consensus 666 ~~ 667 (812)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 54
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.7 Score=45.67 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=58.8
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHH
Q 003531 597 AWDFIQKMPIEP----GITVFGAMLGA--CKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIM 670 (812)
Q Consensus 597 A~~~~~~~~~~p----d~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 670 (812)
-..++++.++.| +..+-|.|..| ...+|++.++.....=+.+..| .+.+|-++|-.+....+++||..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345556666665 34466777777 5689999999999998999999 7999999999999999999999988654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.18 Score=48.84 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh-HHHHHHHH
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD-HYGAMVDL 587 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~ 587 (812)
-.....+.+.|++.+|++.|+++........ ......++.++.+.|++++|...++...+.+.-.|... .+-.++..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 3344556677888888888888877421111 23455667777888888888888888777665555321 11111111
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-----------------chhhH
Q 003531 588 LGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG-----------------YHVLL 650 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l 650 (812)
+... ... .+ ...+..+....|...++.+++.-|+++- .-..+
T Consensus 89 ~~~~--~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 89 YYKQ--IPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHH--HHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--Ccc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 000 00 1122233455666677777776675432 22357
Q ss_pred hhhhhhcCCchHHHHHHHHHHHc
Q 003531 651 ANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 651 ~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+..|.+.|.|..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 88899999999999999998876
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=2.4 Score=47.35 Aligned_cols=135 Identities=13% Similarity=-0.033 Sum_probs=75.1
Q ss_pred hCCCCCCcchHHH-----HHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChhHHHHHhccCCC-
Q 003531 131 YDDVAPVVYNYTY-----LLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCG---QIEEAYKMFDRMPE- 201 (812)
Q Consensus 131 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~- 201 (812)
.-|++.+..-|.. +|+-+...+.+..|.++-..+-..-... ..++.....-+.+.. +.+.+.++=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666555544 3555556667777777665553221122 566777777776653 23333444444444
Q ss_pred -CCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCC----CCCcchHHhHHHHHhccCChHHHHHHHHHHH
Q 003531 202 -RDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGR----RGDFITIVSILPAVANVGSLRIGKAVHGYAM 266 (812)
Q Consensus 202 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 266 (812)
...++|..+.+-.-..|+.+-|..+++.=...+. -.+..-+...+.-+...|+.+...+++-++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5566788887777788888888877653222110 1122334555556666666665555554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.006 Score=48.53 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKM-----PIE---PG-ITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~-----~~~---pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
+|+.++..|.+.|++++|++.+++. ... |+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555554443 011 11 23445555555555555555555555544
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.032 Score=52.53 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHHHh-----cCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcC----------------ChHHHHH
Q 003531 101 KLDALYHTMLKGYAK-----FASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVG----------------EIRRGKE 159 (812)
Q Consensus 101 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~ 159 (812)
+|..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||+.+-+.. ..+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344444444444433 3455555566778888888888888888888876422 2466888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 003531 160 IHGQLIVNGFSLDLFAMTGVVNMYAKCGQ 188 (812)
Q Consensus 160 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 188 (812)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88899999988999888888888866543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.8 Score=44.40 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC-hhHHHHHHHHHHhcCcHH
Q 003531 484 DMYAKCGAVGTARALFDMMNE--RHVTTWNVMIDGYGTHGLGKAAVELFNKMLE-GPTKPN-DITFLCAISACSHSGLVE 559 (812)
Q Consensus 484 ~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~ 559 (812)
..|.+.|++.++-.+++.+-+ |....|.. -.+.+.|+ .++.-+++... ..++|| ......+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 456677777777777776653 44443332 22334443 33333333221 115565 345556666667777777
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGR-AGRLNEAWDFIQKM 604 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~~ 604 (812)
.|..--+... ...|....|..|.+.-.. .|+-.++...+-+.
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 7666554443 456777777777776653 47777777777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.046 Score=57.75 Aligned_cols=117 Identities=8% Similarity=0.010 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003531 557 LVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGR---------AGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK 624 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g 624 (812)
..+.|..+|.+......++|+ ...|..+...+.. .....+|.++.+++ .+.| |+.....++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888755567774 5666666554432 22455677777776 5566 7778888888888888
Q ss_pred CHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 625 NVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+++.|...|+++..++|+.+.++...+.+..-.|+.++|.+..++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998886654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.79 Score=47.37 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=21.1
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCC-----ChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 003531 518 GTHGLGKAAVELFNKMLEGPTKP-----NDITFLCAISACSHSGLVEEGIHYFTS 567 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~ 567 (812)
.++|++.+|.+.|.+.+. +.| +...|.....+..+.|+.++|+.--+.
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 344555555555555444 222 222333333444445555555444433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.063 Score=50.59 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=67.1
Q ss_pred HHHHhc--CCCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc--------------
Q 003531 497 ALFDMM--NERHVTTWNVMIDGYGT-----HGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS-------------- 555 (812)
Q Consensus 497 ~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 555 (812)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666666666643 356666666777777777777777777777655331
Q ss_pred --CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 556 --GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 556 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234668899999985 5999999999999999988764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.46 Score=46.22 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=73.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPT-KP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAG 592 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 592 (812)
..-.+.|++++|.+.|+.+..+.. .| ...+-..++-++-+.+++++|+...++..+.++-.|++. |...+.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs--- 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS--- 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH---
Confidence 334456666666666666665311 01 133455555566666666666666666666655555542 222333333
Q ss_pred CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-----------------cchhhHhhhh
Q 003531 593 RLNEAWDFIQKMP-IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEG-----------------GYHVLLANIY 654 (812)
Q Consensus 593 ~~~eA~~~~~~~~-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l~~~~ 654 (812)
.|...+ ...|. .-...|...+++++.--|+.. +.-..+++.|
T Consensus 118 -------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 118 -------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred -------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 00011 113345555555555556432 2334678889
Q ss_pred hhcCCchHHHHHHHHHHHc
Q 003531 655 AAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 655 ~~~g~~~~a~~~~~~m~~~ 673 (812)
.+.|.|..|..-++.|.+.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 9999999999999999876
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.8 Score=42.29 Aligned_cols=194 Identities=18% Similarity=0.116 Sum_probs=130.4
Q ss_pred HhHHHHHhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-HHHHHHHH-HHHh
Q 003531 445 VSVIPALAELSVIRYAKWIHALVIRS-CFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--RHV-TTWNVMID-GYGT 519 (812)
Q Consensus 445 ~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~-~~~~~li~-~~~~ 519 (812)
......+...+....+...+...... ........+..+...+...+....+.+.+..... ++. ..+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333444444444444444443332 2233444555566666677778888888877663 222 23333333 6888
Q ss_pred CCCHHHHHHHHHHHHhCCCCC----ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCH
Q 003531 520 HGLGKAAVELFNKMLEGPTKP----NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 594 (812)
.|++++|...|++... ..| ....+......+...++.+++...+...... ... ....+..+...+...|.+
T Consensus 143 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 143 LGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred cCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccH
Confidence 9999999999999866 344 2334444555567888999999999988753 223 367788888999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 595 NEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 595 ~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999887 44554 456666666666777899999999999999986
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=4.2 Score=46.15 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=70.3
Q ss_pred HHHHHhhcCCChhHHHHhhccCCCCChhHHHHH---HHHHHhcCCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCC
Q 003531 77 KLVSLFCKYNSLSDAARVFEPIPDKLDALYHTM---LKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGE 153 (812)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 153 (812)
.-+.++.+..-++.|..+-..-..+....-+.+ .+-+-+.|++++|..-|-+-... +.| ..+++-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 456666677777777777654433222222222 23455678888887776665432 122 335555555555
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCC
Q 003531 154 IRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMP 200 (812)
Q Consensus 154 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 200 (812)
+..-...++.+.+.|+ .+...-+.|+.+|.|.++.+.-.+..+...
T Consensus 413 IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5666666777777775 344455678888888888877776666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0085 Score=47.65 Aligned_cols=62 Identities=5% Similarity=0.037 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC---ccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFEL----DPDE---GGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
.+++.+...|...|++++|+..+++++++ .+++ ..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 47888999999999999999999999864 2222 45688999999999999999999988754
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.061 Score=54.89 Aligned_cols=128 Identities=10% Similarity=-0.055 Sum_probs=90.1
Q ss_pred ccHHhHHHHHhccccHHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCC--h
Q 003531 442 FTMVSVIPALAELSVIRYAKWIHALVIR----SCFE-KNVFVMTALIDMYAKCGAVGTARALFDMMN-------ERH--V 507 (812)
Q Consensus 442 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-------~~~--~ 507 (812)
..|..+-+.|.-.|+++.+...|+.-++ .|-. .....+..|.+.+.-.|+++.|.+.|.... .+. .
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666666778899999888875433 2211 234456778888888999999999887644 232 3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh----CC-CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLE----GP-TKPNDITFLCAISACSHSGLVEEGIHYFTSLK 569 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 569 (812)
.+.-+|.+.|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4666788888888889999988876543 11 11234578889999999999999988776544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.08 Score=48.16 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEP--VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a 629 (812)
....|+.+.+.+.+..+...|.-.+ +... ..........++++ -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3455667777777766665442211 2111 12222333333332 122456677778899999999
Q ss_pred HHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 630 EKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.48 Score=45.79 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=99.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHh
Q 003531 483 IDMYAKCGAVGTARALFDMMNE--RH----VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSH 554 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~ 554 (812)
...+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...|++.++. -|+ ...+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3446677999999999988872 22 235666788899999999999999999884 343 2233333333322
Q ss_pred c-------------CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 003531 555 S-------------GLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVF--GAMLGA 619 (812)
Q Consensus 555 ~-------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~--~~ll~~ 619 (812)
- +...+|...|+.+++. |=.....++|...+..+. +...- -.+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 1 1223444455544443 444444555555544431 11111 123455
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCc---cchhhHhhhhhhcCCchHHHH
Q 003531 620 CKIHKNVELGEKAANRLFELDPDEG---GYHVLLANIYAAASMWDKLAK 665 (812)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 665 (812)
|.+.|.+..|..-++.+++.-|+.. .....++..|.+.|..+.+..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8889999999999999999988754 356788889999999885543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.054 Score=57.15 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 542 DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-M---DHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 542 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
...++.+..+|.+.|++++|+..|++..+ +.|+ . ..|..+..+|...|++++|++.++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677788888888888888888877763 5664 2 24777888888888888888887776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.33 Score=48.29 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCC-HHHHH
Q 003531 541 NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAG---RLNEAWDFIQKM-PIEPG-ITVFG 614 (812)
Q Consensus 541 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~pd-~~~~~ 614 (812)
|...|..|..+|...|+.+.|...|....+- .| +++.+..+..++.... ...+|.++|+++ ..+|+ .....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 5667888888888888888888888877653 33 5666666666655332 356788888887 56674 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
-|..++...|++.+|...++.+++..|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 55566888999999999999999877754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=53.66 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=99.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
.+.|.+.|++..|...|++.+.. -+ +...-+.++..... .. -...+..+.-++.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-AL--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-HH--------HHHHhhHHHHHHHhhhh
Confidence 46778888999999888887651 11 11111122222211 11 12356667788889999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHH-HHHHHHH
Q 003531 594 LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKL-AKVRTIM 670 (812)
Q Consensus 594 ~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 670 (812)
+.+|++..++. ...| |+-..---+.+|...|+++.|+..|+++++++|+|-.+..-|+.+-.+....++. +++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877 4555 5556666788899999999999999999999999988888888887777766655 7788888
Q ss_pred HHc
Q 003531 671 EKK 673 (812)
Q Consensus 671 ~~~ 673 (812)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.21 Score=44.06 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.7
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 003531 588 LGRAGRLNEAWDFIQKM----PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 588 ~~~~g~~~eA~~~~~~~----~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
..+.|++++|.+.|+.+ |..| ..-.-..|+.++.+.|+++.|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34556666666666665 3223 2234455677778888888888888888888877654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.79 Score=39.41 Aligned_cols=140 Identities=17% Similarity=0.126 Sum_probs=80.2
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 003531 518 GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEA 597 (812)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 597 (812)
.-.|..++..++..+..... +..-++-++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34677777788777776532 23334444433333334444445555544333322 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 598 WDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 598 ~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
..-+-.+. .+....+.-+++..++|.-++-.+++..+.+.+..+|...+-++++|.+.|...++.++++++=++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44443332 123334555677888899999999999998766567889999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.41 Score=42.27 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhccCCCC
Q 003531 626 VELGEKAANRLFELDPDE 643 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~ 643 (812)
...|...|++++..-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 567888888888888864
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.027 Score=36.13 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
.+|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478889999999999999999999999999963
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.28 E-value=5.8 Score=43.49 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=128.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNER---HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISA 551 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 551 (812)
+..+|..-++.-.+.|+.+...-+|++..-| -...|--.+.-....|+.+-|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5667888888888899999999999888743 2335655555555558888888888777765444445555444555
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAW---DFIQKM-PIEPGITVFGAMLG-----ACK 621 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~pd~~~~~~ll~-----~~~ 621 (812)
+...|+.+.|..+++.+..++ |+ +..-.--+....|.|+++.+. +++... +..-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 678899999999999998763 64 333334466777899999988 665554 22223333333222 144
Q ss_pred hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCC
Q 003531 622 IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 659 (812)
..++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57899999999999999999998888888888766653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.07 Score=52.28 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---ccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 606 IEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE---GGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 606 ~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..||..-| |+.++...|+++.|...|..+.+-.|+. |..+.-|+.+..+.|+.++|..+++...++
T Consensus 176 ~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 176 YTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34566666 6667777777777777777777655544 456777788888888888888888777765
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.039 Score=35.30 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 611 TVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 611 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
.+|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.16 Score=44.44 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 003531 573 GIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM----PIEPGITVFGAMLGACKI 622 (812)
Q Consensus 573 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~pd~~~~~~ll~~~~~ 622 (812)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566666777777777777777777666554 444456677766655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.21 Score=45.34 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHH----HhcCCCCChhH
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLK----KDYGIEPVMDH 580 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 580 (812)
...++..+...|++++|+++.++++. ..| |...|..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566667777777777777776 344 45677777777777777777777776653 34577776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.95 E-value=8.4 Score=43.56 Aligned_cols=95 Identities=12% Similarity=0.211 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCCC-----ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 003531 524 KAAVELFNKMLEGPTKP-----NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAW 598 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 598 (812)
+..+++|.+.-+..+-| ........+..|.+.|-++|-.-++.+|- .++.+|--+.-+.++.++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 45566666655443333 12233344555555566666555555542 12222322333445666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003531 599 DFIQKMPIEPGITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 599 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~ 630 (812)
++.++ +.|...|..|++.+..+-.+-.++
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 66654 458888988888776654444333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.4 Score=40.74 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCCCCccch
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKMP-------IEPGI-TVFGAMLGACKIHKNVELGEKAANRLFE----LDPDEGGYH 647 (812)
Q Consensus 580 ~~~~li~~~~~~g~~~eA~~~~~~~~-------~~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 647 (812)
.|......|.|..+++||-..|.+-. --|+. -.+-+.+-.+....|+..|++.++.-.+ +.|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566677777777766665541 11222 1223333344445677778777777544 345566666
Q ss_pred hhHhhhhhhcCCchHHHHHH
Q 003531 648 VLLANIYAAASMWDKLAKVR 667 (812)
Q Consensus 648 ~~l~~~~~~~g~~~~a~~~~ 667 (812)
..|...| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6666655 456667666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.14 Score=44.74 Aligned_cols=95 Identities=9% Similarity=0.213 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSG 556 (812)
Q Consensus 477 ~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 556 (812)
.++.+++.++++.|+++....+.+..=.-| +.+-...+. --......|+..+..+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 345556666666666666666665432111 111111111 1122346788888899999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003531 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDL 587 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 587 (812)
++..|+++.+...+.|+++-+...|..|..-
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999977788888877653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.41 Score=48.37 Aligned_cols=160 Identities=9% Similarity=0.039 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC---hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCC--CC--ChhH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE-GPTKPN---DITFLCAISACSHSGLVEEGIHYFTSLKKDYGI--EP--VMDH 580 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~ 580 (812)
.|..+..++.+.-++.+++.+-+.-.. .|..|. .....++..|....+.++++++.|+...+--.- +| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444455444444555444333222 122221 112223444445555566666666655432111 11 2345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCccc
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-------PIEPG-----ITVFGAMLGACKIHKNVELGEKAANRLFEL--DPDEGGY 646 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~-------~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~ 646 (812)
|..|...|++..++++|.-+..++ .+..= ..+...|.-+++..|.+-.|.+..+++.++ ...|..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666666666666666655444433 21110 112223334566666666666666666543 2222222
Q ss_pred ----hhhHhhhhhhcCCchHHHHHHH
Q 003531 647 ----HVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 647 ----~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
...++++|...|+.|.|..-++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2356666666666665544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.5 Score=39.28 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=61.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHH
Q 003531 483 IDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVE 559 (812)
Q Consensus 483 i~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 559 (812)
|..+.+.+.......+++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHH
Confidence 3333334444444444444331 12334445555554432 2333444432 123444555677777777777
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRA-GRLNEAWDFIQKMPIEPGITVFGAMLGACK 621 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~ 621 (812)
++..++.++.. +...++.+... ++.+.|.+++.+- .++..|..++..|.
T Consensus 87 ~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 87 EAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 77777765431 22233333333 7778888877763 25667777776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.43 Score=43.22 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=64.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK 624 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g 624 (812)
...-+-+.|++++|..+|.-+.. ..| +..-+..|...+-..|++++|..++..+ -+.+ |+...--....+...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 34445678899999999887763 344 5566777888888888999999888766 1212 3333444556677889
Q ss_pred CHHHHHHHHHHHhccCCC
Q 003531 625 NVELGEKAANRLFELDPD 642 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~ 642 (812)
+.+.|+..|+.+++ .|.
T Consensus 120 ~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 120 KAAKARQCFELVNE-RTE 136 (165)
T ss_pred CHHHHHHHHHHHHh-Ccc
Confidence 99999999988887 343
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.42 E-value=3.4 Score=44.20 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=49.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHHhc
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMP-I-EPGI--TVFGAMLGACKIH 623 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~-~pd~--~~~~~ll~~~~~~ 623 (812)
+..++-+.|+.+||++.|++|.+++.......+...|+..|...+.+.++..++.+-. + -|.. ..|++.+-..+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334445555555555555555442222223344445555555556666555555542 1 1222 2333333222222
Q ss_pred CC---------------HHHHHHHHHHHhccCCCCccc
Q 003531 624 KN---------------VELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 624 g~---------------~~~a~~~~~~~~~~~p~~~~~ 646 (812)
++ ...|.++..++++.+|.-+.+
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 22 234678899999999965543
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.93 Score=48.29 Aligned_cols=191 Identities=12% Similarity=0.098 Sum_probs=99.2
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH--hhcCCHHH
Q 003531 519 THGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL--GRAGRLNE 596 (812)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~e 596 (812)
+..+.+.-+++-++.++ +.||-.+...++ +-.....+.++.++|++..+. |- .. +.... ...|..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~---lg~s~~~~~~g~~-- 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----AS---LGKSQFLQHHGHF-- 246 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hh---hchhhhhhcccch--
Confidence 34556666667777776 667755544333 444556677888888776643 10 00 00000 011111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 597 AWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPD--EGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 597 A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
.+.+.+-...|-..+=..|...+++.|+.++|++.++.+++..|. +..+...|.+.+-..+.+.|+..+..+-.+..
T Consensus 247 -~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 -WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred -hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 111111111222333344555667778888888888888776653 34567777888888888888877776654333
Q ss_pred CccCCcccEEEECCEEEEE-EeCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccCC
Q 003531 675 LQKTPGCSLVELKNEVHSF-YSGSTKHPQ-------SKRIYTFLETLIDEIKAAGYVPDT 726 (812)
Q Consensus 675 ~~~~~~~s~~~~~~~~~~f-~~~~~~~~~-------~~~i~~~l~~l~~~m~~~g~~p~~ 726 (812)
+.|....+|.. ..-.| ..||...|+ +......++-+.+.++...++|+-
T Consensus 326 lpkSAti~YTa---ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 326 LPKSATICYTA---ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred CCchHHHHHHH---HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 32322222210 00000 122332232 122233456677778888888874
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.94 Score=45.41 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHH--H--HHHHhcCcHHHH
Q 003531 489 CGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCA--I--SACSHSGLVEEG 561 (812)
Q Consensus 489 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l--~a~~~~g~~~~a 561 (812)
.|+..+|...++++. ..|..+|+--=.+|..+|+.+.-...+++.+-. ..||...|..+ + -++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 355555555555555 245556666666666666666666666665543 23443222211 1 122445666666
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 562 IHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 562 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
++.-++.. .+.| |.-.-.+....+.-.|+..|+.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 65444433 3444 3333444555555566666666666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.36 Score=52.41 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=83.6
Q ss_pred HHhCCCHHHHHHHHH--HHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 003531 517 YGTHGLGKAAVELFN--KMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 594 (812)
...+|+++++.++.+ ++.. .++ ..-...++.-+.+.|..+.|+++-..-..+ -++..++|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 345677777766664 2221 122 334666777778888888888765433222 3556688999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 595 NEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 595 ~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
+.|.++.++.. +...|..|......+||++.|++++++.- -+..|.-+|...|+.+.-.++-+...++|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998877653 77899999999999999999999998653 45567777888888877777766666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.24 Score=45.70 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=70.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhc
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEPG------ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~-~~~pd------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
++-+.+.|.+++|..-+..+ .+-|. .+.|..-..+..+.+..+.|+....++++++|....+....+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 45566778888888777665 22221 334444455677889999999999999999998888888889999999
Q ss_pred CCchHHHHHHHHHHHcC
Q 003531 658 SMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 658 g~~~~a~~~~~~m~~~g 674 (812)
..+++|..-++++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999998763
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.53 Score=46.29 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN----DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGA 583 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 583 (812)
.|+.-+.. .+.|++.+|...|...++.. |+ ...+.-|..++...|++++|..+|..+.+.++-.| -++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 35566777777777777642 22 22344566777777777777777777777666555 3466666
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 584 li~~~~~~g~~~eA~~~~~~~ 604 (812)
|+..+.+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 666666666666666666555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=7.3 Score=38.21 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=105.3
Q ss_pred HHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh-----
Q 003531 486 YAKCGAVGTARALFDMMNERH------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSH----- 554 (812)
Q Consensus 486 y~k~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----- 554 (812)
-.+.|++++|.+.|+.+.... ..+--.++-++.+.+++++|+..+++.+..-..-...-|...|.+.+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 446799999999999998422 234455667788999999999999999984322223445555555542
Q ss_pred --cCcHH---HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHH
Q 003531 555 --SGLVE---EGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITV--FGAMLGACKIHKNVE 627 (812)
Q Consensus 555 --~g~~~---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~--~~~ll~~~~~~g~~~ 627 (812)
..+.. +|..-|+.++.++ |+ ..--.+|..-+.... |... =.++..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 12222 3333333344332 22 111122222221110 1111 123445688899999
Q ss_pred HHHHHHHHHhccCCCCc---cchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 628 LGEKAANRLFELDPDEG---GYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 628 ~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
-|..-++++++.-|+.+ ..+..+.++|...|..++|.+..+-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999999876544 35667888999999999999988777653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.37 Score=41.19 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=43.0
Q ss_pred HHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-C-CH---HHHHHHHHHHHhcC
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIE-P-GI---TVFGAMLGACKIHK 624 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p-d~---~~~~~ll~~~~~~g 624 (812)
.+..|+++.|++.|.+... +-| .+..||.-..+|--+|+.++|++-+++. .+. | .. ..+-.-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3445555555555554442 233 4455555555555555555555555444 110 1 11 12222233466667
Q ss_pred CHHHHHHHHHHHhccCC
Q 003531 625 NVELGEKAANRLFELDP 641 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p 641 (812)
+.+.|..-|+.+-++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777766666655543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.6 Score=46.51 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=106.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCCh-----hHHHHHHHHHH----hcCcHHHHHHHHHHHHHhcCCCCChh
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPND-----ITFLCAISACS----HSGLVEEGIHYFTSLKKDYGIEPVMD 579 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~ 579 (812)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555666777777777777765532 11111 12333333332 256788899999998865 46554
Q ss_pred HHHH-HHHHHhhcCCHHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccch-hhHh
Q 003531 580 HYGA-MVDLLGRAGRLNEAWDFIQKMP-----I-EPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYH-VLLA 651 (812)
Q Consensus 580 ~~~~-li~~~~~~g~~~eA~~~~~~~~-----~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l~ 651 (812)
.|.. -+..+...|++++|.+.|+++- . +-....+--+.+.+....++++|...+.++.+.+.-....| ...+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4443 3566778899999999999761 1 11334555677788889999999999999999776555544 4567
Q ss_pred hhhhhcCCc-------hHHHHHHHHHHHc
Q 003531 652 NIYAAASMW-------DKLAKVRTIMEKK 673 (812)
Q Consensus 652 ~~~~~~g~~-------~~a~~~~~~m~~~ 673 (812)
-+|...|+. ++|.++++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 777888988 7777777776553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.2 Score=40.17 Aligned_cols=177 Identities=17% Similarity=0.107 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHH
Q 003531 490 GAVGTARALFDMMN--ERH-VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYF 565 (812)
Q Consensus 490 g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 565 (812)
|-..-|+--|.+.. .|+ +..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44444444444433 333 44666666666778888888888887777 4453 334444444555667777777655
Q ss_pred HHHHHhcCCCCChhHHHHH-HHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 566 TSLKKDYGIEPVMDHYGAM-VDLLGRAGRLNEAWDFI-QKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 566 ~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~eA~~~~-~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
...-+ -+|+- -|.+| +..--+.-+..+|..-+ ++.. .-|..-|..-+-.+..-+=-+ +.+++++.+-..++
T Consensus 157 ~~fYQ---~D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQ---DDPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHh---cCCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 44433 23321 12222 11112333555665443 3332 335556665554443322111 22333333322222
Q ss_pred -------ccchhhHhhhhhhcCCchHHHHHHHHHHHcCC
Q 003531 644 -------GGYHVLLANIYAAASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 644 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 675 (812)
.++|.-|+.-|...|..++|..+|+.....++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 46888999999999999999999998876543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=18 Score=41.41 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=47.5
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCccchhhHhhhhhhcCCc
Q 003531 585 VDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFE-LDPDEGGYHVLLANIYAAASMW 660 (812)
Q Consensus 585 i~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~ 660 (812)
+..+....+.+++..+.+..+-. |+..|-.++.-+...++.+.-.+...++++ +..++--.-..+.+++++.+..
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~l 787 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTL 787 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCce
Confidence 34455666777777777777522 788888888888888877766666666654 2222233334556666665543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.36 E-value=5.7 Score=35.56 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhC
Q 003531 346 ALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKC 388 (812)
Q Consensus 346 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 388 (812)
++..+...+........++.+.+.+ ..+....|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3333433444444445555544444 24455566666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.58 Score=45.69 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=79.1
Q ss_pred HHHHhhccCC--CCChhHHHHHHHHHHhc-----CCchHHHHHHHHhHhCCCCCCcchHHHHHHHhcCcCC---------
Q 003531 90 DAARVFEPIP--DKLDALYHTMLKGYAKF-----ASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGE--------- 153 (812)
Q Consensus 90 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--------- 153 (812)
..++.|...+ ++|-.+|-+++..+... +.++=....+..|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 57777888888776553 4555556678889999999999999999998865442
Q ss_pred -------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-hHHHHHhccCC
Q 003531 154 -------IRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQI-EEAYKMFDRMP 200 (812)
Q Consensus 154 -------~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~-~~A~~~f~~~~ 200 (812)
-+-+..++++|...|+-||-.+-..|++++.+.+-. ....++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234677888888888888888888888888776542 23334444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.28 E-value=13 Score=39.35 Aligned_cols=67 Identities=7% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003531 170 SLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLV---SWNTIVAGFAQNGFAELALDLVTRMHEEGRR 236 (812)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 236 (812)
+.|...|-.||.-|...|..++.++++++|..|-.. +|..-|++=....+++....+|.+.....+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 567778888888888888888888888888775443 6777777777777777777777777665444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.04 E-value=2 Score=42.74 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAM---LGACKIHKNV 626 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~pd~~~~~~l---l~~~~~~g~~ 626 (812)
.....|+..+|...|+..... .| +...--.|+.+|...|+.++|..++..+|.+-...-|..+ +....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 445667777777777766643 23 4556666777888888888888888887644333333221 2222222222
Q ss_pred HHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 627 ELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
.+. ..+++-+..+|+|...-..|+..|-..|+.++|...+=.+.++
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 221 2344556788999999999999999999999998776555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.22 Score=49.79 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 003531 548 AISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHK 624 (812)
Q Consensus 548 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g 624 (812)
-.+-|.++|.+++|+..|..-+ .+.| ++..+..-.-+|.+..++..|+.-.+.+ .+... .-.|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567778888888888887665 4566 6777777777888888887777665544 11110 113434444445567
Q ss_pred CHHHHHHHHHHHhccCCCC
Q 003531 625 NVELGEKAANRLFELDPDE 643 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~~ 643 (812)
+.++|.+-++.+++++|++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 8888888888888888874
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.97 E-value=9.9 Score=40.31 Aligned_cols=149 Identities=16% Similarity=0.011 Sum_probs=84.0
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCC--Ch
Q 003531 504 ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP---NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP--VM 578 (812)
Q Consensus 504 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~ 578 (812)
.....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. .+.. +.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 3445688889999999999999999999888744222 2334444555667788889999888877752 1111 11
Q ss_pred hHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCCCccchhhHh
Q 003531 579 DHYGAMVDLLGRAGRLNEAWDF-IQKMPIEPGITVFGAMLGACKIH------KNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 579 ~~~~~li~~~~~~g~~~eA~~~-~~~~~~~pd~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
.....+...+.. ..+..... .......--..++..+..-+... ++.+.+...|+++.++.|+....+..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111100 00000000 00000000011233333333333 7889999999999999998877777777
Q ss_pred hhhh
Q 003531 652 NIYA 655 (812)
Q Consensus 652 ~~~~ 655 (812)
..+.
T Consensus 300 ~~~~ 303 (352)
T PF02259_consen 300 LFND 303 (352)
T ss_pred HHHH
Confidence 6654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.85 E-value=6.1 Score=39.46 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=82.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 593 (812)
......|++.+|..+|+...+. .| +...-..+..++...|+++.|..++..+-.+. -.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 3445677777777777777763 23 23455566677777777777777776654320 01111112234555666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCccchhhHhhhhhhcCCch
Q 003531 594 LNEAWDFIQKMPIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELD--PDEGGYHVLLANIYAAASMWD 661 (812)
Q Consensus 594 ~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~ 661 (812)
..+..++..+..-.| |...-..|...+...|+.+.|...+-.+++.+ -+|...--.|..++...|.-+
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 666566655554455 44455556666777777777777666666533 334445555555555555444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=13 Score=37.95 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003531 475 NVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHG-LGKAAVELFNKMLEGPTKPNDITFLCAISACS 553 (812)
Q Consensus 475 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 553 (812)
+..+-...+.++++.|+.+....+...+..+|...-..-+.++.+.+ +..++...+..++. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444455555555555332223333333444444344444444332 13344444444442 334444445555555
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGA 619 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~ 619 (812)
+.|+. ++...+-...+. ++ .....+.+++.-|.- +|...+.++ .-.||..+-...+.+
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 55552 333333333321 11 122344445555542 344444444 223344444333333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.19 Score=32.08 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888889999999999999988885
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.29 E-value=1 Score=44.11 Aligned_cols=108 Identities=10% Similarity=0.106 Sum_probs=81.7
Q ss_pred HHHHHhcC--CCChHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCc-----------
Q 003531 496 RALFDMMN--ERHVTTWNVMIDGYGTH-----GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGL----------- 557 (812)
Q Consensus 496 ~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------- 557 (812)
+..|.... ++|-.+|-+++..+..+ ++.+-....++.|.+.|+.-|..+|..||+.+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45666666 67888888888887643 5667777788899999999999999999987644322
Q ss_pred -----HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC-HHHHHHHHHhC
Q 003531 558 -----VEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGR-LNEAWDFIQKM 604 (812)
Q Consensus 558 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~eA~~~~~~~ 604 (812)
-+=++.++++|.. +|+.||.++-..|+++++|.|. ..+..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2347889999984 5999999999999999999985 34444444334
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.22 E-value=3.3 Score=45.09 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=82.8
Q ss_pred cCChhHH------HHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHH
Q 003531 186 CGQIEEA------YKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGK 259 (812)
Q Consensus 186 ~g~~~~A------~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 259 (812)
.++++++ .+++..+| ..-.+.+++-+-+.|.++.|+++-++-..
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------------------- 323 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP---KDQGQSIARFLEKKGYPELALQFVTDPDH--------------------------- 323 (443)
T ss_dssp TT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH---------------------------
T ss_pred cCChhhhhhhhhhhhhcccCC---hhHHHHHHHHHHHCCCHHHHHhhcCChHH---------------------------
Confidence 4666663 34443333 23367777777778888888877443221
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003531 260 AVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPT 339 (812)
Q Consensus 260 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 339 (812)
-.+...++|+++.|.++-++.. +...|..|.....+.|+++-|.+.|.+..+
T Consensus 324 --------------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------ 375 (443)
T PF04053_consen 324 --------------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------ 375 (443)
T ss_dssp --------------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------
T ss_pred --------------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------
Confidence 1233447788888888776654 556888888888888888888888877543
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 003531 340 NVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAADIF 398 (812)
Q Consensus 340 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (812)
+..++-.+...|+.+.-.++.+.....| -+|.....+.-.|++++..+++
T Consensus 376 ---~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 376 ---FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred ---ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555666655555555555444 1333333444445555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.98 E-value=11 Score=39.57 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHhCCChHHHHHHHHhcCCC---Cc----ccHHHHHHHHHH---cCChHHHHHHHHHHhhCCCCCCcccHHhHHHHH
Q 003531 383 SMYSKCKKVDRAADIFSKLQGK---TL----VSWNAMILGYAQ---NGRVNEALNYFCKMRSKNIKPDSFTMVSVIPAL 451 (812)
Q Consensus 383 ~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 451 (812)
-.|-...+++.-.++.+.+... ++ ..-....-++-+ .|+.++|++++..+....-.++..||..+...+
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3466666677777777666543 11 111223344555 678888888887765555566666666555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.87 E-value=29 Score=40.01 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=32.5
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccC
Q 003531 203 DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVG 253 (812)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 253 (812)
+...| ++|--+.+.|++++|.++..+... +.......|...+.++....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 34456 467778888999999888855543 34556667788888886653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.4 Score=48.76 Aligned_cols=143 Identities=22% Similarity=0.194 Sum_probs=100.6
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHh----hcCCHHHH
Q 003531 527 VELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVM-----DHYGAMVDLLG----RAGRLNEA 597 (812)
Q Consensus 527 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~----~~g~~~eA 597 (812)
.-+|+-++.. ++| .+..+++...-.|+-+.|++.+....+..++.-.. -.|...+-.+. .....++|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555552 333 34556666777899999999988876544444322 22333333332 24578999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhccCCC----CccchhhHhhhhhhcCCchHHHHHHHHHH
Q 003531 598 WDFIQKM-PIEPGITVFGAMLGA-CKIHKNVELGEKAANRLFELDPD----EGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 598 ~~~~~~~-~~~pd~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.++++.+ ..-|+...|.-.-+- ++..|+.+.|++.++++++...+ ....+.-+++.+.-.++|++|...+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999999 557888888665544 67889999999999998863322 23456788999999999999999999998
Q ss_pred Hc
Q 003531 672 KK 673 (812)
Q Consensus 672 ~~ 673 (812)
+.
T Consensus 333 ~~ 334 (468)
T PF10300_consen 333 KE 334 (468)
T ss_pred hc
Confidence 75
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=15 Score=35.68 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---hh---HHHHHHHH
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN---DI---TFLCAISA 551 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~---t~~~ll~a 551 (812)
.++--..+|..+|..+.|-..+++.- -...+-++++|+++|++...- +.-+ .. .+..+-..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhH
Confidence 45556778889998888777766542 123455677777777776542 1111 11 23334445
Q ss_pred HHhcCcHHHHHHHHHHHHHh---cCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHH
Q 003531 552 CSHSGLVEEGIHYFTSLKKD---YGIEPVM-DHYGAMVDLLGRAGRLNEAWDFIQKM---P--IEP-GITVFGAMLGACK 621 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~---~--~~p-d~~~~~~ll~~~~ 621 (812)
+.+..++++|-..|.+-..- ..--|+. ..|-..|-.+.-..++..|...++.- | ..| |..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 66677777776655432210 0111221 23444555566677899999999884 2 233 5668888888764
Q ss_pred hcCCHHHHHHHHH
Q 003531 622 IHKNVELGEKAAN 634 (812)
Q Consensus 622 ~~g~~~~a~~~~~ 634 (812)
.||.|+...++.
T Consensus 240 -~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 -EGDIEEIKKVLS 251 (308)
T ss_pred -cCCHHHHHHHHc
Confidence 577787777663
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.33 E-value=7.4 Score=39.77 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=66.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCC-C----hhHHHHHHHHHHhcCcHHHHHHHHHHH---HHhcCCCCChhHHHH-
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKP-N----DITFLCAISACSHSGLVEEGIHYFTSL---KKDYGIEPVMDHYGA- 583 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~~~~- 583 (812)
|..++.-.+.++++++.|+...+---.. | -..+..|.+.+.+..++++|.-+..+. .+.+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4445555556666666666655421111 1 224666666666666666666554432 233343332222322
Q ss_pred ----HHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 584 ----MVDLLGRAGRLNEAWDFIQKM-------PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 584 ----li~~~~~~g~~~eA~~~~~~~-------~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
|.-+|-..|++-+|.+..++. +-+| -......+...|+..|+.|.|..-|+++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 223444556665555555443 2222 233455666777777777777777777664
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.21 Score=45.23 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=62.7
Q ss_pred HHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHH
Q 003531 143 YLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAEL 222 (812)
Q Consensus 143 ~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 222 (812)
.+++.+.+.+.......+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777778888888888888877677889999999999999888888888884433 444566777777777777
Q ss_pred HHHHHHHH
Q 003531 223 ALDLVTRM 230 (812)
Q Consensus 223 A~~l~~~m 230 (812)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.95 E-value=4.5 Score=36.63 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=55.8
Q ss_pred HHHhcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACKIHKNVEL 628 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~ 628 (812)
.-...++.+++..++..+. -+.|. .+.-..-+..+.+.|++.+|..+++++ .-.|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3355667777777777776 35663 333334455667788888888888887 233444555677777766544444
Q ss_pred HHHHHHHHhccCCC
Q 003531 629 GEKAANRLFELDPD 642 (812)
Q Consensus 629 a~~~~~~~~~~~p~ 642 (812)
=...++++++..|+
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 45556667776663
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.76 E-value=7.5 Score=37.97 Aligned_cols=260 Identities=15% Similarity=0.203 Sum_probs=149.7
Q ss_pred CCCCChhHHHHHHHHH-HhCCChHHHHHHHHhcCCC-------CcccHHHHHHHHHHcCChHHHHHHHHHHhh---CCCC
Q 003531 370 KLGTDVSMTNSLISMY-SKCKKVDRAADIFSKLQGK-------TLVSWNAMILGYAQNGRVNEALNYFCKMRS---KNIK 438 (812)
Q Consensus 370 g~~~~~~~~~~Li~~y-~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 438 (812)
+.+||+..-|..-+.- .+..++++|..-|+++.+- +..+.-.||..+.+.|++++.++.+.+|.. +.+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444332211 2344677888888776532 123445678888889999999888888754 1122
Q ss_pred --CCcccHHhHHHHHhccccHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 003531 439 --PDSFTMVSVIPALAELSVIRYAKWIHALVIRS-----CFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE------- 504 (812)
Q Consensus 439 --p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~------- 504 (812)
-+..+.++++.-.+...+.+.-..+++.-.+. +-..--.+-+-|...|...|.+.+-.+++.++.+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23456677777666666666555555443321 1111122334566677777888777777776651
Q ss_pred -CC-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCChhHHHHHHHHH-----HhcCcHHHHHHHHHHHHH
Q 003531 505 -RH-------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGP-TKPNDITFLCAISAC-----SHSGLVEEGIHYFTSLKK 570 (812)
Q Consensus 505 -~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~ 570 (812)
.| ...|..-|..|....+-.+-..+|++.+.-. --|. .....++.-| .+.|.+++|..-|-+.-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 2367777888888888888888888876522 2233 3344566666 457788887654444444
Q ss_pred hcCCC--CC---hhHHHHHHHHHhhcCC--HHHHHHHHHhC-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 003531 571 DYGIE--PV---MDHYGAMVDLLGRAGR--LNEAWDFIQKM-PI--EPGITVFGAMLGACKIHKNVELGEKAANRLFELD 640 (812)
Q Consensus 571 ~~~~~--p~---~~~~~~li~~~~~~g~--~~eA~~~~~~~-~~--~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 640 (812)
.|.-. |. .--|-.|.+++.+.|- ++. +++ |. .|.......|+.+|..+ + +..|+++++.+
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~N-d----I~eFE~Il~~~ 329 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQNN-D----IIEFERILKSN 329 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhcc-c----HHHHHHHHHhh
Confidence 44322 21 2235566777777762 111 112 33 34455677888888654 3 34455555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.38 Score=31.26 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
|..|...|...|++++|+.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666777777777766544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.89 E-value=2.2 Score=42.88 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=119.7
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH----HHHHHhhcCCH
Q 003531 519 THGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA----MVDLLGRAGRL 594 (812)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 594 (812)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++... -.||...|.. +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 5667778888888999999999988888887743 3555544443 34455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----ccchhhHhhhhhhcCCchHHHHHHH
Q 003531 595 NEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDE----GGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 595 ~eA~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
++|++.-++. .+.| |.-.-.+........|+.++|.+..++--..--+. +-.|-+.+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999888 6666 55455666777788899999998877654322211 2345577777888899999999998
Q ss_pred HHHHcCCccCCccc
Q 003531 669 IMEKKGLQKTPGCS 682 (812)
Q Consensus 669 ~m~~~g~~~~~~~s 682 (812)
.=.-+.+.|+.+++
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 77666666666644
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=27 Score=35.63 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003531 474 KNVFVMTALIDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISAC 552 (812)
Q Consensus 474 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 552 (812)
++..+-...+.++++.|+.+....+.+.+..+++ .-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3444555556666666664322233333333332 23456666666664 577777766652 34554444444444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=89.15 E-value=3.1 Score=36.11 Aligned_cols=62 Identities=13% Similarity=0.000 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHhc-cCCCC-ccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 612 VFGAMLGACKIH---KNVELGEKAANRLFE-LDPDE-GGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
+--.+.|+.... .+..+++.+++.+++ -.|+. -.....|+-.+++.|+++++.++.+...+.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333445554433 356677888888876 44433 233445666677888888888887777664
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.93 E-value=48 Score=37.88 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhc
Q 003531 173 LFAMTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVAN 251 (812)
Q Consensus 173 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 251 (812)
..++..+|+.+.-.|++++|-...-.|...+..-|-.-+.-+...++......+ +.....+.+...|..+|-.+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 456677788888888888888888888777777777777777766665443322 2221122344456666655544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.3 Score=30.25 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPND 542 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 542 (812)
+|..+...|...|++++|.++|++.++ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 455666666677777777777777666 34543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.58 E-value=45 Score=38.42 Aligned_cols=210 Identities=13% Similarity=0.177 Sum_probs=84.9
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCC---CCchhHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCChhh--HHHH
Q 003531 279 ALVDMYAKCGRVETARLVFDGMKS---RNVVSWNSMIAAYVEGGN-------PEEAMRIFQKMLDQGVEPTNVT--IMEA 346 (812)
Q Consensus 279 ~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t--~~~l 346 (812)
++|--+.+||++++|.++...... +....+-..+..|..+.+ -++...-|++........|.+- .-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 466677789999999888833332 344556666777766532 2344555665554433235442 2223
Q ss_pred HHHHhccCC--------hHHHHHHHHHHhhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcccHHHHH
Q 003531 347 LHACADLGD--------LERGIFVHKLLDQLKLGT-----DVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMI 413 (812)
Q Consensus 347 l~a~~~~~~--------~~~a~~i~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 413 (812)
|..|--... .+.=..+.=.+++..... +..++..|-+...+-| .+.|.. ..++.. ..
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Yf 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---YF 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----------HH
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---HH
Confidence 333322111 122222222222222111 1112211111111111 111211 112222 34
Q ss_pred HHHHHcCChHHHHHHHHHHhhCCCCCCcccHHhHHHHHhccccHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---c
Q 003531 414 LGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSC-FEKNVFVMTALIDMYAK---C 489 (812)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~k---~ 489 (812)
..+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-..-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 456678999999998876 2334566666666665443322222111 2111110 11111346677777775 4
Q ss_pred CCHHHHHHHHHhcC
Q 003531 490 GAVGTARALFDMMN 503 (812)
Q Consensus 490 g~~~~A~~~~~~m~ 503 (812)
.+..+|.++|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67778888776665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.53 E-value=21 Score=35.57 Aligned_cols=55 Identities=15% Similarity=-0.082 Sum_probs=50.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 618 GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 618 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
.+|...|++.+|.++.++++.++|-+...+..|.++|+..|+--+|.+-++++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4688999999999999999999999999999999999999999999888888764
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.9 Score=43.28 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-.--.|-+|.+.|.+..|..-++.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35666778899999999999999999999999888888999999999999999988877665
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.39 E-value=1.8 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=36.5
Q ss_pred hhhHhhhhhhcCCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 003531 647 HVLLANIYAAASMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFLETLIDEIKAAGY 722 (812)
Q Consensus 647 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~ 722 (812)
...|+-.+.+.|++++|.+..+.+.+. +|...+.....+.+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456777889999999999999999875 45555555556667778888773
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.98 E-value=2.5 Score=38.92 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhccCCCCccchhhHhhhhhhcCC----chHHHHHHHHHH
Q 003531 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAASM----WDKLAKVRTIME 671 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 671 (812)
+++|+.-+++++.++|+...++..++++|...|. -.+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4678888889999999999999999999987754 234445555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.94 E-value=3.5 Score=41.34 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCChhHHH
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLE-----GPTKPNDITFL 546 (812)
Q Consensus 476 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 546 (812)
..++..++..+..+|+.+.+.+.++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34566777888888888888888877763 3566888888888888888888888887755 45555544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.78 E-value=71 Score=38.49 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=38.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 003531 515 DGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 594 (812)
.-+...+.+++|.-+|+..-+. --.+.++...|+|++++.+..++.. +-.--..+--.|+.-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccc
Confidence 3334445555555555443221 1234556666666666665554431 1111122224455555566666
Q ss_pred HHHHHHHHhC
Q 003531 595 NEAWDFIQKM 604 (812)
Q Consensus 595 ~eA~~~~~~~ 604 (812)
-||-++..+.
T Consensus 1016 ~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1016 YEAAKILLEY 1025 (1265)
T ss_pred hhHHHHHHHH
Confidence 6666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.77 E-value=34 Score=34.83 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=10.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhC
Q 003531 516 GYGTHGLGKAAVELFNKMLEG 536 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~ 536 (812)
.+.+.++.+++.+.+.+|+..
T Consensus 130 il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHhccCChhHHHHHHHHHHHh
Confidence 333345555555555555553
|
It is also involved in sporulation []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.2 Score=28.28 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 003531 508 TTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN 541 (812)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (812)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777776 4453
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.73 E-value=72 Score=38.46 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=53.5
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCccc--HHhHHHHHhccccHH
Q 003531 381 LISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFT--MVSVIPALAELSVIR 458 (812)
Q Consensus 381 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~ 458 (812)
-.-+|.++|+.++|.+. |..+|++.+|+.+-.+|... -|... -..|..-+...+..-
T Consensus 958 Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 34467788888887654 44567888888887776431 12211 123444444455444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003531 459 YAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNERH 506 (812)
Q Consensus 459 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~ 506 (812)
+|-++..+... . ..-.+..|++...+++|.++-......|
T Consensus 1017 eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1017 EAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred hHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 44444333221 1 1233556777777777777766554433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.4 Score=44.38 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=63.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 003531 514 IDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAG 592 (812)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 592 (812)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..-....... -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 5679999999999999999888 677 9999999999999999998888766655421 123455666654
Q ss_pred -------CHHHHHHHHHhC-CCCCCHH
Q 003531 593 -------RLNEAWDFIQKM-PIEPGIT 611 (812)
Q Consensus 593 -------~~~eA~~~~~~~-~~~pd~~ 611 (812)
+++||.+-.+.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 455555444443 5677643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.54 E-value=5.4 Score=40.03 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCcHHHHHHHHHHHHH----hcCCCCChhHH
Q 003531 507 VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSLKK----DYGIEPVMDHY 581 (812)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 581 (812)
..++..++..+...|+++.+.+.+++++.. .| |...|..++.+|...|+...|+..|+.+.+ +.|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 346677888888889999999999999884 44 678899999999999999999988888765 34666665555
Q ss_pred HHHHHH
Q 003531 582 GAMVDL 587 (812)
Q Consensus 582 ~~li~~ 587 (812)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.2 Score=28.81 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKML 534 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (812)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.45 E-value=15 Score=38.86 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC----CCccchhhHhhhhhhcCCchHHHHHHHHHHHc
Q 003531 609 GITVFGAMLGACKIHKNVELGEKAANRLFELDP----DEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 609 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 673 (812)
...+|..+...++++|+++.|...+.++...++ ..+.....-+.+.+..|+.++|....+...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999998663 24566777799999999999999988877763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.3 Score=46.95 Aligned_cols=87 Identities=17% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHH
Q 003531 586 DLLGRAGRLNEAWDFIQKM-PIEPGITVFGAML-GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKL 663 (812)
Q Consensus 586 ~~~~~~g~~~eA~~~~~~~-~~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 663 (812)
+-+.+.+.++.|..++.++ .+.|+.+++.+.= .++.+.+++..|+.-+.++++++|...-.|+.-+.++.+.+.+.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 4445667778888887776 6788766554443 6788889999999999999999999888999999999999999999
Q ss_pred HHHHHHHHH
Q 003531 664 AKVRTIMEK 672 (812)
Q Consensus 664 ~~~~~~m~~ 672 (812)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888876554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.22 E-value=16 Score=35.18 Aligned_cols=24 Identities=4% Similarity=-0.075 Sum_probs=17.8
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCc
Q 003531 621 KIHKNVELGEKAANRLFELDPDEG 644 (812)
Q Consensus 621 ~~~g~~~~a~~~~~~~~~~~p~~~ 644 (812)
.+.+++.+|+.+|+++....-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 356788999999998877555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.10 E-value=60 Score=36.90 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=91.2
Q ss_pred CHHHHHHHHHhcCCC-ChHHHHHHHHHH----HhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHH
Q 003531 491 AVGTARALFDMMNER-HVTTWNVMIDGY----GTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYF 565 (812)
Q Consensus 491 ~~~~A~~~~~~m~~~-~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 565 (812)
+...|.++|....+. .+.+.-.+...| ....+.+.|..++++.-+.| .|-..--...+..+.. +.++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 455666666655532 222222222222 13346777777777777766 3332222333334444 5566555555
Q ss_pred HHHHHhcCCCCChhHHHHHHHHH-----hh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 003531 566 TSLKKDYGIEPVMDHYGAMVDLL-----GR--AGRLNEAWDFIQKMPIEPGITVFGAMLGACKIH----KNVELGEKAAN 634 (812)
Q Consensus 566 ~~m~~~~~~~p~~~~~~~li~~~-----~~--~g~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~----g~~~~a~~~~~ 634 (812)
..+... |.+--...-..+.+.. .+ ..+.+.+..++.+...+-+......|...|..- .+.+.|...+.
T Consensus 421 ~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 421 LYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred HHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 444432 3322111111111111 11 225566777777764444555555555554432 36778888887
Q ss_pred HHhccCCCCccchhhHhhhhhh----cCCchHHHHHHHHHHHc
Q 003531 635 RLFELDPDEGGYHVLLANIYAA----ASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 635 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 673 (812)
++-+.. +.....|+.++-. .. +..|.++++...+.
T Consensus 500 ~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 500 RASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 777665 5566777777732 23 67888888877664
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.07 E-value=1.7 Score=31.19 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCccc
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPDEGGY 646 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 646 (812)
.+.-++.+.|+++.|.+..+.+++++|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34557899999999999999999999987544
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=86.88 E-value=46 Score=35.33 Aligned_cols=205 Identities=14% Similarity=0.177 Sum_probs=134.3
Q ss_pred cCCHHHHHHHHHhcCC----CChHHHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCcHH
Q 003531 489 CGAVGTARALFDMMNE----RHVTTWNVMIDGY-GTHGLGKAAVELFNKMLEGPTKPN----DITFLCAISACSHSGLVE 559 (812)
Q Consensus 489 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 559 (812)
.|+.++|.+.+..+.. +....+-+|+.+- ....++.+|+++|++..- .-|- +....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5999999999988873 4456777777664 456789999999999876 4553 234444555678899999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHH-HHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003531 560 EGIHYFTSLKKDYGIEPVMDHYG-AMVDLLGRAG---RLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 560 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g---~~~eA~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
++..+-....+.|...|-...|. -++..+.+.+ ..+.-.+++..|.-.--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888777777777777443333 2333443333 4445555666663122345787888888899999999999999
Q ss_pred HhccCCCCccchhhHhhhhhhc-----CCchHHHHHHHHHHHcCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 003531 636 LFELDPDEGGYHVLLANIYAAA-----SMWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSGSTKHPQSKRIYTFL 710 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l 710 (812)
+..+.+. ...-...+.+|... ...+++.+....+-. +..+|.-..+.+..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~------------------------~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR------------------------DKLSERDRALLEAA 337 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh------------------------hhCChhhHHHHHHH
Confidence 9998743 33334444555332 335555544433322 23367777777666
Q ss_pred HHHHHHHHHc
Q 003531 711 ETLIDEIKAA 720 (812)
Q Consensus 711 ~~l~~~m~~~ 720 (812)
..+-.++.+.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 7777776654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.88 E-value=1.1e+02 Score=39.88 Aligned_cols=309 Identities=13% Similarity=0.081 Sum_probs=160.2
Q ss_pred HHHHhccCChHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHh-cCCCCcccHHHHHHHHHHcCChH
Q 003531 347 LHACADLGDLERGIFVHKLLDQLKL--GTDVSMTNSLISMYSKCKKVDRAADIFSK-LQGKTLVSWNAMILGYAQNGRVN 423 (812)
Q Consensus 347 l~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~ 423 (812)
..+..+.+.+.+|...++.-..... ......+-.+...|+..+++|...-+... ...+ +...-|.-....|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHH
Confidence 3344555666666666555210000 11122333444577777777776666552 2222 2333455566778888
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHhHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHHh
Q 003531 424 EALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTAL-IDMYAKCGAVGTARALFDM 501 (812)
Q Consensus 424 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-i~~y~k~g~~~~A~~~~~~ 501 (812)
.|..-|+++.+.+ |+ ..+++.++..-...+.++......+..... ..+...-++.+ +.+-=+.++++.-.....
T Consensus 1467 da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 8999998888753 44 667777777666666666655433333222 12222222222 233345555555555544
Q ss_pred cCCCChHHHHHH-HH-HHHhC--CCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHH----------
Q 003531 502 MNERHVTTWNVM-ID-GYGTH--GLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTS---------- 567 (812)
Q Consensus 502 m~~~~~~~~~~l-i~-~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~---------- 567 (812)
..+..+|.+. +. ...+. .+.-.-.+..+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4455556554 22 22111 11111112333332211111 2233333322222222111
Q ss_pred HHHhcCCCCChhHHH-H--HHHHHhhcCCHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Q 003531 568 LKKDYGIEPVMDHYG-A--MVDLLGRAGRLNEAWDFIQKM-------PIEPG-----ITVFGAMLGACKIHKNVELGEKA 632 (812)
Q Consensus 568 m~~~~~~~p~~~~~~-~--li~~~~~~g~~~eA~~~~~~~-------~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~ 632 (812)
.....+..++..+.+ . ...-+.+.+....+.+-+-.+ ...|+ ..+|......++..|.++.|..+
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111113333211111 0 111222222222233322211 12322 34899999999999999999999
Q ss_pred HHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 633 ANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 633 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
.-++.+..+ +.++.-.+...+..|+-..|..+.+...++.
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999888875 7889999999999999999999999888764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.61 E-value=17 Score=33.46 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHhcCcCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChhHHHHHhccCCCC
Q 003531 124 SFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLD-LFAMTGVVNMYAKCGQIEEAYKMFDRMPER 202 (812)
Q Consensus 124 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 202 (812)
+.++.+.+.+++|+...+..+++.+.+.|.+..-. +++..++-+| ..+...|++.- +....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 44556667778888888888888888888765433 3344444344 33333333322 1222333332233322
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcchHHhHHHHHhccCChHHHHHHHHHHHH
Q 003531 203 DLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMR 267 (812)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 267 (812)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++.....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234667778888888888888887765322 223334556666666665555555555444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.47 E-value=41 Score=34.31 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-C--ChHHHHHHHHHH---HhCCCHHHHHHHHHHHHhCCCCCCh
Q 003531 481 ALIDMYAKCGAVGTARALFDMMNE-R--HVTTWNVMIDGY---GTHGLGKAAVELFNKMLEGPTKPND 542 (812)
Q Consensus 481 ~li~~y~k~g~~~~A~~~~~~m~~-~--~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 542 (812)
.-++...+.++.+++.+++.+|.. . ....+...+..+ .. .....|...+.+++...+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 334555556677777777776652 1 223444444443 33 2345666666666665555544
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.39 E-value=7.3 Score=36.53 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 478 VMTALIDMYAKCGAVGTARALFDMMNERH------VTTWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 478 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777888888888888887776432 23566667777777777777776666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.35 E-value=2.6 Score=39.71 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=47.4
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~ 630 (812)
..|.+.-|+--|.... .+.|+ +.+||.|+--+...|+++.|.+.|+.. .+.|. ..+...-+-++.--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3444444554444433 45553 456666666666666666666666665 44442 112222222334456667777
Q ss_pred HHHHHHhccCCCCc
Q 003531 631 KAANRLFELDPDEG 644 (812)
Q Consensus 631 ~~~~~~~~~~p~~~ 644 (812)
+-+.+..+-+|+||
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 66666666666655
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.32 E-value=79 Score=36.55 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHHhccC---CCCcc-ch-----hhHhhhhhhcCCchHHHHHHHHHH
Q 003531 623 HKNVELGEKAANRLFELD---PDEGG-YH-----VLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 671 (812)
.|+..+........+.+- ||... .+ ..+.+.|...|+.++|...+....
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 566666555555454422 22221 12 245555677788888877776553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.23 E-value=20 Score=36.79 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcC---cHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003531 524 KAAVELFNKMLEGPTKPN-DITFLCAISACSHSG---LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDL 587 (812)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 587 (812)
+.+..+|+.+.+.|+..+ ..-+.+-+-++.... .+..+.++++.+.+. |+++...+|..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 456677777877777764 333444333332221 145677788888766 888877777766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.79 E-value=2.2 Score=38.55 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHH
Q 003531 623 HKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 623 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 672 (812)
+++.+.++.++.-+--+.|..++.-..-++++...|+|.+|.++++.+.+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444455555555554444433
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=83 Score=36.40 Aligned_cols=116 Identities=7% Similarity=0.010 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHhC-CCCCChh--HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 003531 520 HGLGKAAVELFNKMLEG-PTKPNDI--TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNE 596 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 596 (812)
..+.+.|..++.+.... ++.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888876443 2333322 2333332223332255666666554321 1233444444555558888888
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhc
Q 003531 597 AWDFIQKMPIE-PGITVFGA-MLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 597 A~~~~~~~~~~-pd~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
+...|..|+-. -+..-|.- +..+....|+.+.|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888311 11222222 33444557888888888888743
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.35 E-value=35 Score=32.10 Aligned_cols=114 Identities=10% Similarity=0.040 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCCCCChhHH--HHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChhHHHH-----HHHHHhhcCCHHHH
Q 003531 525 AAVELFNKMLEGPTKPNDITF--LCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGA-----MVDLLGRAGRLNEA 597 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~eA 597 (812)
+.....+++....-+....++ ..+..++...|++++|...++..... |.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445555555553211111122 22345667788888888877765522 32233333 44567788999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 003531 598 WDFIQKMPIEP--GITVFGAMLGACKIHKNVELGEKAANRLFELDPDE 643 (812)
Q Consensus 598 ~~~~~~~~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 643 (812)
+..++... .+ ....-..-+..+...|+.++|+..|+++++.++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99988763 12 12223334566888899999999999999887643
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.6 Score=37.44 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcC
Q 003531 622 IHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 622 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 674 (812)
..++.++++.++..+--+.|+.++.-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777778888877777888888887788888888888888888887776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.24 E-value=1.1 Score=28.62 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=14.0
Q ss_pred CC-ChhHHHHHHHHHhhcCCHHHHH
Q 003531 575 EP-VMDHYGAMVDLLGRAGRLNEAW 598 (812)
Q Consensus 575 ~p-~~~~~~~li~~~~~~g~~~eA~ 598 (812)
.| +...|..|+..|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44 4556666666666666666554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.97 E-value=0.69 Score=46.66 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHH
Q 003531 591 AGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRT 668 (812)
Q Consensus 591 ~g~~~eA~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 668 (812)
.|.+++|.+.+... ++.|. ...+..-.+++.+.+....|++-+..+++++||...-|-.-+.+....|.|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 46677777777665 44553 33444555667777888888888888888998888888888888888899999888888
Q ss_pred HHHHcCCcc
Q 003531 669 IMEKKGLQK 677 (812)
Q Consensus 669 ~m~~~g~~~ 677 (812)
...+.++..
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 888777653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.58 E-value=36 Score=31.25 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=71.9
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCChh-HHHH--HHHHHhhcC
Q 003531 517 YGTHGLGKAAVELFNKMLEGPTKPNDI-TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMD-HYGA--MVDLLGRAG 592 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~--li~~~~~~g 592 (812)
+++.|..++|+.-|.++.+.|...=++ .-.-........|+..+|...|+++-++ .-.|.+. -..- -..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456777888888888888766543222 2222333457788888888888887755 2223211 1111 123455677
Q ss_pred CHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 593 RLNEAWDFIQKMP--IEP-GITVFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 593 ~~~eA~~~~~~~~--~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
.+++.....+-+. -.| -...-.+|.-+-.+.|++..|.+.|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777776662 222 223445566666677777777777776654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.48 E-value=18 Score=33.09 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=31.9
Q ss_pred HhCCChHHHHHHHHhcCCCCcccHHHHH-----HHHHHcCChHHHHHHHHHHhhCC
Q 003531 386 SKCKKVDRAADIFSKLQGKTLVSWNAMI-----LGYAQNGRVNEALNYFCKMRSKN 436 (812)
Q Consensus 386 ~~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 436 (812)
++.+..++|..-|..+.+.+--+|-.|. ....+.|+...|...|.+.-...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 4556667777777776665554444332 34566777777777777776543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.95 E-value=83 Score=34.96 Aligned_cols=128 Identities=10% Similarity=0.120 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHhHhCCCCCCcch-HHHHHHHhcCcCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 003531 103 DALYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYN-YTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVN 181 (812)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 181 (812)
...|+.+|..--.....+.+...+..+... -|..+- |.....-=.+.|..+.+..+|++.+.. ++.++..|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 345766666555554555555566666532 243332 222222223566777777777776643 5566667766666
Q ss_pred HHHh-cCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003531 182 MYAK-CGQIEEAYKMFDRMPE------RDLVSWNTIVAGFAQNGFAELALDLVTRMHEE 233 (812)
Q Consensus 182 ~y~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 233 (812)
.... .|+.+..++.|+.... ....-|...|.--..++++.....+|++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5543 4666676677766543 33445777777777777788888888877763
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.88 E-value=11 Score=37.95 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 003531 471 CFEKNVFVMTALIDMYAKCGAVGTARALFDMMN-ERH--------VTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN 541 (812)
Q Consensus 471 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (812)
|...+..+...++..-....+++++...+-++. +|+ ..+|-.++. .-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 444455555666666666778888888887776 222 334444333 3367799999999999999999
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003531 542 DITFLCAISACSHSGLVEEGIHYFTSLKKD 571 (812)
Q Consensus 542 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 571 (812)
..|+..++..+.+.+++.+|.++...|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998887776643
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.86 E-value=2.4 Score=25.62 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
.|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566667777788888888888888877774
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.85 E-value=16 Score=34.33 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCCCCh------hH
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDI--TFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVM------DH 580 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~ 580 (812)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+..+......-..|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 67778889999999999999999999876666543 56778888899999999888887776432211122 22
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM 604 (812)
Q Consensus 581 ~~~li~~~~~~g~~~eA~~~~~~~ 604 (812)
|..|. +...|++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23467888887777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.84 E-value=2.8 Score=26.38 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.67 E-value=2.4 Score=28.21 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFE 638 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 638 (812)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.55 E-value=55 Score=33.62 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh--cC----cHHHHHHHHHHHHHhcCCCC--ChhHHHHH
Q 003531 523 GKAAVELFNKMLEGPTKPNDITFLCAISACSH--SG----LVEEGIHYFTSLKKDYGIEP--VMDHYGAM 584 (812)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p--~~~~~~~l 584 (812)
+++.+.+++.|.+.|++-+..+|.+....... .. ....|..+|+.|++++.+-- +-..+..|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL 147 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHH
Confidence 34557788999999999988887764433332 22 35678899999998866533 33444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.50 E-value=13 Score=34.27 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccCCCCccchhhHhhhhhhcCCchHHHHHHHHHHHcCCc
Q 003531 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 676 (812)
+++|...|+++.+.+|++..+...|- +. ++|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe-~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE-MA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH-HH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH-HH------HhhHHHHHHHHHHHhh
Confidence 57788999999999998755444332 22 4577777777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.34 E-value=54 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=35.8
Q ss_pred hhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH--HHHhc-CCHHHHHHHHHHHhccCCCCcc
Q 003531 589 GRAGRLNEAWDFIQKM---PIEPGITVFGA---MLG--ACKIH-KNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 589 ~~~g~~~eA~~~~~~~---~~~pd~~~~~~---ll~--~~~~~-g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
+..|++.+|.++|++. .+..+..-|.. ++. .|... .|.-.+..++++-.+++|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 4567777788887766 23333333322 222 24444 6778888999999999996544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.32 E-value=20 Score=39.44 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=61.5
Q ss_pred hCCChHHHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 003531 286 KCGRVETARLVFDGMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKL 365 (812)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 365 (812)
+.|+++.|.++..+. .+..-|..|..+....|++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 557777777765443 4566788888888888999888888887654 45566666666666655555444
Q ss_pred HhhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHh
Q 003531 366 LDQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSK 400 (812)
Q Consensus 366 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 400 (812)
..+.|. .|.-.-+|...|+++++.+++-+
T Consensus 718 ~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 444442 12223344555666665555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=81.27 E-value=36 Score=29.69 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q 003531 511 NVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKD 571 (812)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 571 (812)
..-+......|+-++--+++.++.+. -+|++....-+..||.+.|+..++.+++.+.-+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33455556666666666666666542 3556666666666777777777766666666543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.15 E-value=4.7 Score=38.02 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-C---CccchhhHhhhhhhcCCchHH
Q 003531 590 RAGRLNEAWDFIQKMPIEP--GITVFGAMLGACKIHKNVELGEKAANRLFELDP-D---EGGYHVLLANIYAAASMWDKL 663 (812)
Q Consensus 590 ~~g~~~eA~~~~~~~~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~---~~~~~~~l~~~~~~~g~~~~a 663 (812)
|.|+ ++|++.|-++.-.| +....-.-+..|....|.++++.++-+++++.+ + |+..+..|+.+|.+.|++++|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4443 56666666663233 334445556667777888999999998888643 2 467888899999999888887
Q ss_pred H
Q 003531 664 A 664 (812)
Q Consensus 664 ~ 664 (812)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.01 E-value=2.6 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 003531 615 AMLGACKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 615 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455566667777777777777776664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=80.96 E-value=25 Score=31.44 Aligned_cols=85 Identities=16% Similarity=0.069 Sum_probs=43.2
Q ss_pred hcCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPV-MDHYGAMVDLLGRAGRLNEAWDFIQKMPIEP-GITVFGAMLGACKIHKNVELGEK 631 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~ 631 (812)
..++.+++..+++.|. -+.|+ .+.-..-+-.+.+.|+++||..++++..-.+ ....-..|+..|.....-..=..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 3666777777777665 34552 2333333445567777777777777773222 33333445544544322222233
Q ss_pred HHHHHhccCC
Q 003531 632 AANRLFELDP 641 (812)
Q Consensus 632 ~~~~~~~~~p 641 (812)
.+.++++-++
T Consensus 99 ~A~~~le~~~ 108 (153)
T TIGR02561 99 HADEVLARDA 108 (153)
T ss_pred HHHHHHHhCC
Confidence 3344444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 8e-11
Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 7/146 (4%)
Query: 222 LALDLVTRMHEEGRRGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALV 281
+A L + + +L SL + +A G +A A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 282 DMYAKCGRVETARLVFDGMKSR-------NVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQ 334
++ A + + + +N+++ + G +E + + + D
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 335 GVEPTNVTIMEALHACADLGDLERGI 360
G+ P ++ AL I
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTI 220
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.5 bits (150), Expect = 5e-10
Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 307 SWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLL 366
+ + + + A + P + L L+
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 367 DQLKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGK-------TLVSWNAMILGYAQN 419
Q +L + ++ A + G+ TL +NA++LG+A+
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 420 GRVNEALNYFCKMRSKNIKPDSFTMVSVIPALA 452
G E + ++ + PD + + + +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 4e-09
Identities = 18/184 (9%), Positives = 48/184 (26%), Gaps = 7/184 (3%)
Query: 432 MRSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGA 491
R P + ++ + + ++ + A
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 492 VGTARALFDMMNER-------HVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDIT 544
+ A L + + + + +N ++ G+ G K V + + + P+ ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 545 FLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM 604
+ A+ I G++ ++ RA L
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 605 PIEP 608
+ P
Sbjct: 263 SLPP 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 2e-08
Identities = 23/209 (11%), Positives = 57/209 (27%), Gaps = 8/209 (3%)
Query: 106 YHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLI 165
L+ + S A R +P LL+ + + GQ
Sbjct: 60 LTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHS 119
Query: 166 VNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRMPER-------DLVSWNTIVAGFAQNG 218
S + Q+ A+ + + L +N ++ G+A+ G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 219 FAELALDLVTRMHEEGRRGDFITIVSILPAVANVG-SLRIGKAVHGYAMRAGFDSIVNVS 277
+ + ++ + + G D ++ + L + + + G +
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 278 TALVDMYAKCGRVETARLVFDGMKSRNVV 306
L+ + ++ V +
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 9e-05
Identities = 19/156 (12%), Positives = 50/156 (32%), Gaps = 8/156 (5%)
Query: 52 SLKELRRILPLIIKSGLCDQHLFQTKLVSLFCKYNSLSDAARVFEPIPDKLDA------- 104
SL + ++ L Q + L A + +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 105 LYHTMLKGYAKFASLDDAVSFLIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRG-KEIHGQ 163
+Y+ ++ G+A+ + + V L ++ + P + +Y L+ G + + Q
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 164 LIVNGFSLDLFAMTGVVNMYAKCGQIEEAYKMFDRM 199
+ G L +++ + ++ +K+
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 83/555 (14%), Positives = 163/555 (29%), Gaps = 144/555 (25%)
Query: 350 CADLGDLERGIFVHKLLDQ-LKLGTDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVS 408
C D+ D+ + I + +D + VS T L K + F + +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYK 92
Query: 409 WNAMILGYAQNGRVNEALNY-FCKMRSKNIKPDSFTMVSV---------IPALAELSVIR 458
+ + Q Y + R N F +V AL EL +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 459 Y---------AK-WIHALVIRS-----CFEKNVFVMTALIDMYAKCGAVGTARALFDMMN 503
K W+ V S + +F + + + +M+
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--------WLNLKNCNSPETVLEMLQ 203
Query: 504 ERHVT---TWNVMIDGYGTHGLGKAAVEL-FNKMLEGPTKPN------DI---------T 544
+ W D L +++ ++L+ N ++
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 545 FLCAISACSHSGLV---EEGIHYFTSLKKDYGIEPVMDHY------GAMVDLLGRAGRLN 595
C I L+ + + L +DH+ + LL + L+
Sbjct: 264 LSCKI-------LLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LD 312
Query: 596 EAWDFIQKMPIE-----P-GITVFGAML--GACKI----HKNVE-LGEKAANRLFELDPD 642
Q +P E P +++ + G H N + L + L L+P
Sbjct: 313 CR---PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 643 E--GGYHVLL-----ANIYAA--ASMWDKLAK--VRTIMEKKGLQKTPGCSLVELKNE-- 689
E + L A+I + +W + K V ++ K L K SLVE + +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKY---SLVEKQPKES 424
Query: 690 ---VHSFYSGSTKHPQSKRIYTFLETLIDEIKAA-GYVPDTNSIHDVEDYVQENL---LS 742
+ S Y +++ Y +++D + D ++ Y ++ L
Sbjct: 425 TISIPSIYLELKVKLENE--YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 743 S--HSEKLA----------------IAFGLLNSSPGSTIHIRKNLRVCGDCHNATKYISL 784
+ H E++ ++ GS ++ + L+ YI
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK------FYKPYICD 536
Query: 785 VTGR-EIIVRDMHRF 798
+ E +V + F
Sbjct: 537 NDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 1e-09
Identities = 103/751 (13%), Positives = 200/751 (26%), Gaps = 252/751 (33%)
Query: 71 QHL-FQTKLVSLFCKYNSLSDAARVFEP--IPDKLDALYHT--MLKGYAKFASLDDAVSF 125
H+ F+T K D VFE + + D M K +D +
Sbjct: 5 HHMDFETGEHQYQYK-----DILSVFEDAFVDN-FD-CKDVQDMPKSILSKEEIDHIIM- 56
Query: 126 LIRMRYDDVAPVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGFSLDLFAMTGVVNMYAK 185
+ + T L + + +E+ + + ++ Y
Sbjct: 57 ---------SKDAVSGTLRLFWT----LLSKQEEMVQKFVEEVLRIN----------Y-- 91
Query: 186 CGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSI 245
+ K R P + N A V+R+ ++ +
Sbjct: 92 -KFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQP------YLKLRQA 143
Query: 246 LPAVANVGSLRIGK--AVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSR 303
L LR K + G + G T + +V+ D
Sbjct: 144 LL------ELRPAKNVLIDG--V-LGSGK-----TWVALDVCLSYKVQCK---MDFK--- 183
Query: 304 NVVSWNSMIAAYVEGGN---PEEAMRIFQKMLDQGVEPTNVTIMEAL----HACADLGDL 356
+ W ++ N PE + + QK+L Q ++P + + +
Sbjct: 184 --IFWLNL-------KNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 357 ERGIFVHK-------LLDQLK--------------LGT--DVSMTNSLISMYSKCKKVDR 393
R + K +L ++ L T +T+ L + + +D
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 394 AADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAE 453
+ + + K+L+ L E P +S+I
Sbjct: 294 HSMTLTPDEVKSLL---LKYLDCRPQDLPREV----LT-----TNP---RRLSIIAESIR 338
Query: 454 LSVIRYAKWIHAL------VIRSC------------------FEKNVFVMTALIDMYAKC 489
+ + W H +I S F + + T L+ +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--- 395
Query: 490 GAVGTARALFDMMNERHVTTWNVMIDG------YGTHGLGKAAVELFNKMLEGPTKPNDI 543
+ ++N+ H + +++ + LE K +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSI----------YLELKVKLENE 442
Query: 544 TFLCAISACSHSGLVEEGIHYFTSLKKDYG--IEPVMDHYGAMVDLLGRAGRLNEAWDFI 601
L H +V+ HY D I P +D Y
Sbjct: 443 YAL-------HRSIVD---HYNIPKTFDSDDLIPPYLDQY-------------------- 472
Query: 602 QKMPIEPGITVFGAMLGACKIH-KNVELGEKAA--NRLFELDPDEGGYHVLLANIYAAAS 658
F + +G H KN+E E+ +F LD + L I ++
Sbjct: 473 -----------FYSHIGH---HLKNIEHPERMTLFRMVF-LD-----FRFLEQKIRHDST 512
Query: 659 MWDKLAKVRTIMEKKGLQKTPGCSLVELKNEVHSFYSG--STKHPQSKRIYTFLETLIDE 716
W+ + L +LK FY P+ +R+ + ++D
Sbjct: 513 AWNASGSILNT-------------LQQLK-----FYKPYICDNDPKYERL---VNAILDF 551
Query: 717 IKAAGYVPDTNSIHDVE-DYVQENLLSSHSE 746
+ N I D ++ L++
Sbjct: 552 LPKIE----ENLICSKYTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 4e-08
Identities = 66/502 (13%), Positives = 138/502 (27%), Gaps = 161/502 (32%)
Query: 43 SALLLEVCTSLKELRRILPLI--IKSGLCDQH-----LFQTKLVSLFCKYNSLSDAARVF 95
+ + L+VC S K ++ I + C+ + Q L + + S SD +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS--- 220
Query: 96 EPIPDKLDALYHT-----MLKGYAKFASL---DDAV-------SF------LIRMRYDDV 134
I ++ ++ K Y L + V +F L+ R+ V
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 135 APVVYNYTYLLKVCGDVGEIRRGKEIHGQLIVNGF----SLDLFAMTGVVNMYAKCGQI- 189
+ T I L ++ + +
Sbjct: 278 TDFLSAATT--------------THISLDHHSMTLTPDEVKSLLLK--YLDC--RPQDLP 319
Query: 190 EEAYK-------MFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITI 242
E + L +W+ + + D +T + E ++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDN---------WKHVNCDKLTTIIE-------SSL 363
Query: 243 VSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKS 302
+ PA R + + F ++ T L+ +
Sbjct: 364 NVLEPAE-----YR-----KMFDRLSVFPPSAHIPTILLSLI------------------ 395
Query: 303 RNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFV 362
W +I + M + K+ + E I +
Sbjct: 396 -----WFDVI--------KSDVMVVVNKLHKYS--------------LVEKQPKESTISI 428
Query: 363 HKLLDQLKLGTD--VSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGY-AQN 419
+ +LK+ + ++ S++ Y+ K D +D + +G+ +N
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFD--SDDLIPPYLDQYFYSH---IGHHLKN 483
Query: 420 GRVNEALNYFCK-------MRSKNIKPDSFTMVSVIPALAELSVIR-YAKWIHALVIRSC 471
E + F + K I+ DS + L L ++ Y +I +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYI----CDND 538
Query: 472 --FEKNVFVMTALIDMYAKCGA 491
+E+ V A++D K
Sbjct: 539 PKYERLV---NAILDFLPKIEE 557
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 66/460 (14%), Positives = 122/460 (26%), Gaps = 69/460 (15%)
Query: 246 LPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYA-------KCGRVETARLVFD 298
L +A G + +AVH A + +N++ A V A V+ V
Sbjct: 158 LVKIAKRGGVTAMEAVHASR-NALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216
Query: 299 ---GMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALH----ACA 351
G+ VV+ S + + + + G+ P V A+
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH--GLPPDQV---VAIASNIGGKQ 271
Query: 352 DLGDLERGIFVHKLLDQ-LKLGTDVSMT-NSLISMYSKCKKVDRAADIFSK---LQGKTL 406
L ++R + +L Q L D + S + V R + + L +
Sbjct: 272 ALETVQRLL---PVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQV 328
Query: 407 VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYA--KWIH 464
V+ + G V L C+ + PD + A+A + A
Sbjct: 329 VAIASHDGGKQALETVQRLLPVLCQAHG--LTPDQ------VVAIASNGGGKQALETVQR 380
Query: 465 ALVIRSCFEKNVFVMTALIDMYAKCGAVG----TARALFDM-----MNERHVTTWNVMID 515
L + + + A G R L + + V
Sbjct: 381 LL---PVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 437
Query: 516 GYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYG-- 573
G + + + + P + A + ++ + L
Sbjct: 438 GKQALETVQRLLPVLCQTHG--LTPAQVV------AIASHDGGKQALETVQQLLPVLCQA 489
Query: 574 IEPVMDHYGAMVDL---LGRAGRLNEAW-DFIQKMPIEPGITVFGAMLGACKIHKNVELG 629
D A+ + Q + P V A G K + +E
Sbjct: 490 HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGK--QALETV 547
Query: 630 EKAA---NRLFELDPDEGGYHVLLANIYAAASMWDKLAKV 666
++ + L PD+ A +L V
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 587
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 13/147 (8%)
Query: 301 KSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHAC-ADLGDLERG 359
++ + + I K+L+ +P N+ + A + G+ +
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKL 358
Query: 360 IFV-HKLLDQLKLGTDVSMT-NSLISMYSKCKKVDRAADIFSK---LQGKTLVSWNAMIL 414
+ + L+D + ++T ++ Y K+ A FSK + + +W
Sbjct: 359 YLISNDLVD---RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415
Query: 415 GYAQNGRVNEALNYFCKMRSKNIKPDS 441
+A G ++A++ + + + +
Sbjct: 416 SFAIEGEHDQAISAYTT--AARLFQGT 440
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 10/141 (7%)
Query: 308 WNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLD 367
Y N + A +++ L V+ + L + L E V KL
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 368 QLKLGTDVSMTNSL----ISMYSKCKKVDRAADIFSKLQG--KTLVSWNAMILGYAQNGR 421
D + SL ++ S ++ RA D S + G K+ R
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 422 VNEALNYFCKMRSKNIKPDSF 442
+ L K+ I P +
Sbjct: 321 FIDVLAITTKILE--IDPYNL 339
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 54/446 (12%), Positives = 121/446 (27%), Gaps = 64/446 (14%)
Query: 248 AVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCG-------RVETARLVFD-- 298
+A G + +AVH + A + +N++ V A V+ V
Sbjct: 40 KIAKRGGVTAVEAVHAWR-NALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98
Query: 299 -GMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEALH----ACADL 353
G+ + VV+ S + + + + G+ P V A+ L
Sbjct: 99 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPEQV---VAIASHDGGKQAL 153
Query: 354 GDLERGIFVHKLLDQ-LKLGTDVSMT-NSLISMYSKCKKVDRAADIFSK---LQGKTLVS 408
++ + +L Q L + + S + V R + + L + +V+
Sbjct: 154 ETVQALL---PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210
Query: 409 WNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELSVIRYA--KWIHAL 466
+ G V L C+ + + P + A+A + A L
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQ--AHGLTPQQ------VVAIASNGGGKQALETVQRLL 262
Query: 467 VIRSCFEK-------NVFVMTALIDMYAKCGAVGTARALFD---MMNERHVTTWNVMIDG 516
+ V + + V + + + V G
Sbjct: 263 ---PVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
Query: 517 YGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS-GLVEEGIHYFTSLKKDYGIE 575
+ + + + P + + + + V+ + L + +G+
Sbjct: 320 KQALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLL---PVLCQAHGLT 374
Query: 576 PVMDHYGAMVDL---LGRAGRLNEAW-DFIQKMPIEPG-ITVFGAMLGACKIHKNVELGE 630
P + A+ + Q + P + + G + + V+
Sbjct: 375 P--EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432
Query: 631 KAANRLFELDPDEGGYHVLLANIYAA 656
+ L P + A
Sbjct: 433 PVLCQAHGLTPQQVVAIASNGGGRPA 458
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 38/345 (11%), Positives = 86/345 (24%), Gaps = 48/345 (13%)
Query: 284 YAKCGRVETARLVFD---GMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGVEPTN 340
V+ V G+ VV+ S + + + + G+ P
Sbjct: 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQ 207
Query: 341 VTIMEAL-HACADLGDLERGIFVHKLLDQ-LKLGTDVSMT-NSLISMYSKCKKVDRAADI 397
V + + L ++R + +L Q L + S + V R +
Sbjct: 208 VVAIASNGGGKQALETVQRLL---PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 398 FSK---LQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAEL 454
+ L + +V+ + G V L C+ + + P + A+A
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ--AHGLTPQQ------VVAIASN 316
Query: 455 SVIRYA--KWIHALVIRSCFEK-------NVFVMTALIDMYAKCGAVGTARALFDM---M 502
+ A L + V + + V + +
Sbjct: 317 GGGKQALETVQRLL---PVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 503 NERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHS-GLVEEG 561
V G + + + + P + + + + V+
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASHDGGKQALETVQRL 431
Query: 562 IHYFTSLKKDYGIEPVMDHYGAMVDL---LGRAGRLNEAWDFIQK 603
+ L + +G+ P A+ +
Sbjct: 432 L---PVLCQAHGLTP--QQVVAIASNGGGRPALESIVAQLSRPDP 471
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 9/128 (7%)
Query: 279 ALVDMYAKCGRVETARLVFDGM----KSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQ 334
A D + E +++ + + + + + IF+K +
Sbjct: 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163
Query: 335 GVEPTNVTIMEALHACADLGDLERGIFVHKLLDQL--KLGTDVSMTNSLISMYSKCKKVD 392
+V + AL D K+ + K G + I S + +
Sbjct: 164 ARTRHHVYVTAALMEYYCSKDKSVA---FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220
Query: 393 RAADIFSK 400
+F +
Sbjct: 221 NTRVLFER 228
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 23/173 (13%)
Query: 274 VNVSTALVDMYAKCGRVETARLVFD---GMKSRNVVSWNSMIAAYVEGGNPEEAMRIFQK 330
V ++ L M + + + S Y P++A+ + +K
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 331 MLDQGVEPTNVTIMEALHACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKK 390
L+ P N + G + Q+ + N + +
Sbjct: 273 ALE--YIPNNA---YLHC--------QIGCCYRAKVFQVMNLRE----NGMYGKRKLLEL 315
Query: 391 VDRAADIFSK---LQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPD 440
+ A K + + +A + EA YF K SK + P
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 812 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 4e-09
Identities = 51/356 (14%), Positives = 108/356 (30%), Gaps = 13/356 (3%)
Query: 314 AYVEGGNPEEAMRIFQKMLDQGVEPTNVTIMEAL-HACADLGDLERGIFVHKLLDQLKLG 372
+ G+ E A R ++ Q EP N ++ L L+R L +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 373 TDVSMTNSLISMYSKCKKVDRAADIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKM 432
+ +N + + + L+ K + L A + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 433 RSKNIKPDSFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAV 492
+ PD + + S + L + L + L ++ G +
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 493 GTARALFDM---MNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAI 549
A F+ ++ + + + + + AV + + L + A
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 550 SACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQK-MPIE 607
GL++ I + ++ ++P D Y + + L G + EA D + +
Sbjct: 246 -VYYEQGLIDLAIDTY---RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 608 PGITVFGAMLGACKIH-KNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDK 662
P L K N+E + + E+ P+ H LA++ +
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 3e-07
Identities = 47/385 (12%), Positives = 106/385 (27%), Gaps = 16/385 (4%)
Query: 280 LVDMYAKCGRVETARLVFDGM---KSRNVVSWNSMIAAYVEGGNPEEAMRIFQKMLDQGV 336
L + G E A + + N + + + + + + + Q
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-- 62
Query: 337 EPTNVTIMEAL-HACADLGDLERGIFVHKLLDQLKLGTDVSMTNSLISMYSKCKKVDRAA 395
P L + + G L+ I ++ +LK N ++ +
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 396 DIFSKLQGKTLVSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAELS 455
S LQ + LG C +++ +P+ S + +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 456 VIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE---RHVTTWNV 512
+ H + + L ++ + A A + H
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAI-SACSHSGLVEEGIHYFTSLKKD 571
+ Y GL A++ + + +E +P+ C + +A G V E +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN--TAL 298
Query: 572 YGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQK-MPIEPGITVFGAMLGACKIH-KNVELG 629
D + ++ G + EA +K + + P + L + ++
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
Query: 630 EKAANRLFELDPDEGGYHVLLANIY 654
+ P + + N
Sbjct: 359 LMHYKEAIRISPTFADAYSNMGNTL 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 812 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.24 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.98 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.93 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.84 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.36 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.33 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.21 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.16 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.91 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.83 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.62 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.0 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 84.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.07 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 80.26 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8e-22 Score=158.75 Aligned_cols=207 Identities=12% Similarity=0.087 Sum_probs=155.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99985206378999999999982998756499999999991199999999997339---999689999999998579989
Q 003531 448 IPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGK 524 (812)
Q Consensus 448 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 524 (812)
...+...+..+.+...+....+.. +.+...+..+...+...|++++|...|+... ..+...+..+...+...|+++
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (388)
T d1w3ba_ 176 GCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 630102471999999999999849-4649999997155220052999999999857775547999999999999878999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999782999998-36899999999920859999999999888409998755999999998422997999999985
Q 003531 525 AAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQK 603 (812)
Q Consensus 525 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 603 (812)
+|+..|+++.+ +.|+ ...+..+..++...|++++|...++..... .+.+...+..++.++.+.|++++|.+.+++
T Consensus 255 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 330 (388)
T d1w3ba_ 255 LAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999998--49998999999999999748799999999865404--873001015799999987899999999999
Q ss_pred C-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9-9999-997999999999831877899999999853688886304527303210489
Q 003531 604 M-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 604 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 659 (812)
. ...| +..+|..++..+...|++++|...++++++++|+++.++..|+.+|.+.|+
T Consensus 331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9986889899999999999985999999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.7e-21 Score=153.61 Aligned_cols=291 Identities=12% Similarity=0.095 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCC---CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
Q ss_conf 787999998817994899999984278984---11999999999869947999999997528988891327759999852
Q 003531 377 MTNSLISMYSKCKKVDRAADIFSKLQGKTL---VSWNAMILGYAQNGRVNEALNYFCKMRSKNIKPDSFTMVSVIPALAE 453 (812)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 453 (812)
.+..+...|.+.|++++|...+......+. ..+..........+....+........... ................
T Consensus 69 a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 147 (388)
T d1w3ba_ 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf 999999996420002222222221211222222222222222222222222222211122222-2222222222222211
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 06378999999999982998756499999999991199999999997339---999689999999998579989999999
Q 003531 454 LSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELF 530 (812)
Q Consensus 454 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (812)
.+....+........... +.....+..+...+...|..++|...++... ..+...|..+...+...|++++|+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 226 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 000135678888740258-6106899863630102471999999999999849464999999715522005299999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCC
Q ss_conf 9978299999836899999999920859999999999888409998-7559999999984229979999999859--999
Q 003531 531 NKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIE 607 (812)
Q Consensus 531 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~--~~~ 607 (812)
++..... ..+...+..+...+...|++++|...|++..+ +.| +...+..++.++...|++++|.+.++.. ..+
T Consensus 227 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 302 (388)
T d1w3ba_ 227 LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 9857775-54799999999999987899999999999998---4999899999999999974879999999986540487
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999799999999983187789999999985368888630452730321048923899999999876
Q 003531 608 PGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 608 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
.+...+..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|...++++.+.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 300101579999998789999999999999868898999999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.4e-14 Score=107.88 Aligned_cols=120 Identities=13% Similarity=0.019 Sum_probs=66.6
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 208599999999998884099987559999999984229979999999859-9999-99799999999983187789999
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEK 631 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 631 (812)
..+...++...+....+......+...+..++..+.+.|++++|...+++. ...| +...|..++..+...|+++.|..
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 76579999999999999713012221110368888888877550021112222222221110133301221111013788
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999985368888630452730321048923899999999876
Q 003531 632 AANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 632 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
.++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 877899884324999999999999878999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.7e-13 Score=103.13 Aligned_cols=132 Identities=12% Similarity=0.002 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHH
Q ss_conf 7998999999999782999-99836899999999920859999999999888409998-755999999998422997999
Q 003531 520 HGLGKAAVELFNKMLEGPT-KPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEA 597 (812)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA 597 (812)
.+...+|.+.|.+...... .++...+..+...+...|++++|+..++..... .| +...+..++.++.+.|++++|
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHCCCCCCCCHHH
T ss_conf 65799999999999997130122211103688888888775500211122222---222211101333012211110137
Q ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 9999859-9999-9979999999998318778999999998536888863045273032
Q 003531 598 WDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIY 654 (812)
Q Consensus 598 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 654 (812)
.+.++++ ...| +..+|..++.++...|++++|+..+++++++.|++...+..++.++
T Consensus 226 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88877899884324999999999999878999999999999970975700112459999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=5.4e-09 Score=73.14 Aligned_cols=90 Identities=18% Similarity=0.050 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHC------CCCCCCCCHHH
Q ss_conf 99999984229979999999859-9999-----997999999999831877899999999853------68888630452
Q 003531 582 GAMVDLLGRAGRLNEAWDFIQKM-PIEP-----GITVFGAMLGACKIHKNVELGEKAANRLFE------LDPDEGGYHVL 649 (812)
Q Consensus 582 ~~l~~~~~~~g~~~eA~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~ 649 (812)
..++..+...|+.++|...+++. ...| ....+..+...+...|+.+.|...+++++. ..|+....+..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999998604489899999999976224666777889999999987587999999999999887642667479999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 7303210489238999999998
Q 003531 650 LANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 650 l~~~~~~~g~~~~a~~~~~~~~ 671 (812)
++.+|...|++++|.+.+++..
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998789999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.2e-10 Score=82.35 Aligned_cols=170 Identities=11% Similarity=0.125 Sum_probs=86.4
Q ss_pred HHHHHHHHHHCC-CHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 999999999119-9999999997339---99968999999999857998999999999782999998-368999999999
Q 003531 479 MTALIDMYAKCG-AVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACS 553 (812)
Q Consensus 479 ~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 553 (812)
|+....++...| ++++|...++... ..+..+|..+...+...|++++|++.++++++ ..|+ ...|..+...+.
T Consensus 80 ~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~ 157 (315)
T d2h6fa1 80 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQ 157 (315)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHH
T ss_conf 9999999998376799999999999988774226898875888850537889988755543--21004688998877888
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCC
Q ss_conf 20859999999999888409998-75599999999842299------79999999859-9999-9979999999998318
Q 003531 554 HSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGR------LNEAWDFIQKM-PIEP-GITVFGAMLGACKIHK 624 (812)
Q Consensus 554 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 624 (812)
..|++++|+..++.+.+. .| +...|+.+..++.+.+. +++|.+.+.++ ...| +...|..+...+...
T Consensus 158 ~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~- 233 (315)
T d2h6fa1 158 EFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR- 233 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-
T ss_conf 888667899999999987---9744999988999998745631023547767999999984988569999987798862-
Q ss_pred CHHHHHHHHHHHHCCCCCCCCC--HHHHHHHH
Q ss_conf 7789999999985368888630--45273032
Q 003531 625 NVELGEKAANRLFELDPDEGGY--HVLLANIY 654 (812)
Q Consensus 625 ~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~ 654 (812)
..+.+...+++++++.|+.... +..++.+|
T Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 234 GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 71889999999997287757899999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=7.1e-09 Score=72.36 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-C-HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 3789999999999829987564999999999911999999999973399--9-9-6899999999985799899999999
Q 003531 456 VIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMMNE--R-H-VTTWNVMIDGYGTHGLGKAAVELFN 531 (812)
Q Consensus 456 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 531 (812)
..+.+..+++..+....+.+..++...+..+.+.|+.+.|..+|+.+.+ | + ...|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CC
Q ss_conf 9782999998368999999-999208599999999998884099987559999999984229979999999859----99
Q 003531 532 KMLEGPTKPNDITFLCAIS-ACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM----PI 606 (812)
Q Consensus 532 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~----~~ 606 (812)
+++..+ +.+...|..... .....|+.+.|..+|+.+...+ +.+...+...++.+.+.|+.+.|..+|++. +.
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 999808-88679999999999876557789999999999861--003889999999999869868999999999982789
Q ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999--979999999998318778999999998536888863
Q 003531 607 EPG--ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG 645 (812)
Q Consensus 607 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 645 (812)
.|+ ..+|...+..-..+|+.+.+..+.+++.++-|+...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 86899999999999999849999999999999987711022
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1e-08 Score=71.29 Aligned_cols=56 Identities=14% Similarity=-0.006 Sum_probs=20.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999857998999999999782999998---368999999999208599999999998
Q 003531 513 MIDGYGTHGLGKAAVELFNKMLEGPTKPN---DITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
+...+...|++++|...+++........+ ...+..+..++...|++++|...++..
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 277 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 277 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999860448989999999997622466677788999999998758799999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.1e-09 Score=77.79 Aligned_cols=192 Identities=7% Similarity=0.026 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q ss_conf 6499999999991199999999997339--9-99689999999998579-98999999999782999998-368999999
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMN--E-RHVTTWNVMIDGYGTHG-LGKAAVELFNKMLEGPTKPN-DITFLCAIS 550 (812)
Q Consensus 476 ~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 550 (812)
...++.+...+.+.+..++|...++.+. . .+...|+.....+...| ++++|+..+++.++ ..|+ ..+|.....
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_conf 9999999999995886699999999999879887699999999999837679999999999998--87742268988758
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC--
Q ss_conf 99920859999999999888409998-7559999999984229979999999859-9999-99799999999983187--
Q 003531 551 ACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKN-- 625 (812)
Q Consensus 551 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~-- 625 (812)
.+...|++++|+..++.+.+ +.| +...|..++.++.+.|++++|.+.++++ ...| +...|..+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHCCHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 88850537889988755543---210046889988778888886678999999999879744999988999998745631
Q ss_pred ----HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf ----789999999985368888630452730321048923899999999876
Q 003531 626 ----VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 626 ----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
.+.|...+.++++++|++...+..++.++...| .+++...+....+.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_conf 0235477679999999849885699999877988627-18899999999972
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=1.6e-10 Score=83.33 Aligned_cols=168 Identities=8% Similarity=-0.046 Sum_probs=101.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999911999999999973399---99689999999998579989999999997829999983689999999992085
Q 003531 481 ALIDMYAKCGAVGTARALFDMMNE---RHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGL 557 (812)
Q Consensus 481 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 557 (812)
.....+...+..++|...++.+.+ .+...|+.+...+...|++++|...+++... +.|+.. .....+...+.
T Consensus 149 ~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~ 223 (334)
T d1dcea1 149 RRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDP 223 (334)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHCC
T ss_conf 7899987445528999999998871898799999999999982688989998877677--689999---99999988244
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999998884099987559999999984229979999999859-9999-997999999999831877899999999
Q 003531 558 VEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANR 635 (812)
Q Consensus 558 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 635 (812)
.+++...+...... ..+....+..++..+...|+.++|...+.+. +..| +...|..++..+...|+.++|...+++
T Consensus 224 ~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 224 NDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp SCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 14889999988771--8660567887999999986699999999988762913799999999999878999999999999
Q ss_pred HHCCCCCCCCCHHHHHHHHH
Q ss_conf 85368888630452730321
Q 003531 636 LFELDPDEGGYHVLLANIYA 655 (812)
Q Consensus 636 ~~~~~p~~~~~~~~l~~~~~ 655 (812)
+++++|++..+|..|+..+.
T Consensus 302 ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 302 LKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHH
T ss_conf 99879663999999999986
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.2e-09 Score=77.57 Aligned_cols=59 Identities=15% Similarity=-0.026 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 499999999991199999999997339--9-9968999999999857998999999999782
Q 003531 477 FVMTALIDMYAKCGAVGTARALFDMMN--E-RHVTTWNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 477 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
.++..+..+|.+.|++++|...|+++. . .+..+|..+...|...|++++|+..|++.++
T Consensus 72 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 72 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99960042788877788752344689998761111588899999987667999999999986
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=9.5e-08 Score=64.85 Aligned_cols=179 Identities=7% Similarity=-0.023 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999997339----99968999999999857998999999999782999998--3689999999992085999999
Q 003531 490 GAVGTARALFDMMN----ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN--DITFLCAISACSHSGLVEEGIH 563 (812)
Q Consensus 490 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~ 563 (812)
+..++|..+|++.. ..+...|...+..+...|+.+.|..+|++++.. .|. ...|...+..+.+.|+.+.|..
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 245999999999998749987999999999998613389999999999987--157869999999999998278688999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHH-HHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 9999888409998-755999999998-4229979999999859-9-9999979999999998318778999999998536
Q 003531 564 YFTSLKKDYGIEP-VMDHYGAMVDLL-GRAGRLNEAWDFIQKM-P-IEPGITVFGAMLGACKIHKNVELGEKAANRLFEL 639 (812)
Q Consensus 564 ~~~~m~~~~~~~p-~~~~~~~l~~~~-~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 639 (812)
+|+.+.+. .| +...|...+... ...|+.+.|..+++.+ . .+.+...|..++......|+.+.|..++++++..
T Consensus 156 i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 156 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHH---CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999980---888679999999999876557789999999999861003889999999999869868999999999982
Q ss_pred CCCCCC----CHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 888863----0452730321048923899999999876
Q 003531 640 DPDEGG----YHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 640 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
.|.++. .+......-...|+.+.+..+.+.+.+.
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 78986899999999999999849999999999999987
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=5.1e-09 Score=73.31 Aligned_cols=193 Identities=13% Similarity=0.007 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q ss_conf 6499999999991199999999997339---99968999999999857998999999999782999998-3689999999
Q 003531 476 VFVMTALIDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISA 551 (812)
Q Consensus 476 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 551 (812)
..++..+...|.+.|++++|...|++.. ..++.+|+.+..+|...|++++|+..|+++++ +.|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf 999999999999879999999999985434999889996004278887778875234468999--876111158889999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHH----HCCC
Q ss_conf 9920859999999999888409998-7559999999984229979999999859-99999979999999998----3187
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPGITVFGAMLGACK----IHKN 625 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~----~~g~ 625 (812)
+...|++++|...|+...+. .| +......+...+.+.+..+.+..+.... ...+....+.. +..+. ..+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 99876679999999999865---3000788899999998853587899999876403144434557-7888888777778
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 7899999999853688886304527303210489238999999998769
Q 003531 626 VELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 626 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 674 (812)
.+.+...+.......|+....+..++.+|...|++++|...+++.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9999999998664084509999999999998789999999999999839
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=7e-10 Score=79.08 Aligned_cols=208 Identities=6% Similarity=-0.122 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHCC---CCCHHHHHH-HHHHHHHCCCHHHHHHHH
Q ss_conf 7899999999998299875649999999999119--9999999997339---999689999-999998579989999999
Q 003531 457 IRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCG--AVGTARALFDMMN---ERHVTTWNV-MIDGYGTHGLGKAAVELF 530 (812)
Q Consensus 457 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~A~~~~ 530 (812)
++.+...++.+.+.. +.+...+..+...+...+ +.++|...++.+. .++...|.. ....+...+.+++|+..+
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999999999868-8867989886489988430428999999999985592121111057899987445528999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCC
Q ss_conf 99782999998-368999999999208599999999998884099987559999999984229979999999859--999
Q 003531 531 NKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM--PIE 607 (812)
Q Consensus 531 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~--~~~ 607 (812)
++++. ..|+ ...|..+..++...|++++|...+...... .|. .......+...+..+++...+.+. ...
T Consensus 168 ~~~i~--~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~ 239 (334)
T d1dcea1 168 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (334)
T ss_dssp HTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHH--CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 99887--18987999999999999826889899988776776---899---99999999882441488999998877186
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999799999999983187789999999985368888630452730321048923899999999876
Q 003531 608 PGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 608 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
++...+..++..+...++.+.|...+.++++.+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 605678879999999866999999999887629137999999999998789999999999999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=9.1e-07 Score=58.30 Aligned_cols=139 Identities=8% Similarity=-0.053 Sum_probs=93.2
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999119999999999733999968999999999857998999999999782999998-36899999999920859999
Q 003531 483 IDMYAKCGAVGTARALFDMMNERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEG 561 (812)
Q Consensus 483 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 561 (812)
...+...|+++.|.+.|+.+..++...|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999877999999999864898899999999999985891467878999999--8552346678899999854249999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 999999888409998755999999998422997999999985999999-9799999999983187789999999985368
Q 003531 562 IHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELD 640 (812)
Q Consensus 562 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 640 (812)
...|++.... ...+... .+...| .....+ ..++..+...+...|+++.|...+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--CCCCCHH------HHHHHH-----------HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9999999986--7267367------899866-----------54363058899999999999789999999999998369
Q ss_pred CC
Q ss_conf 88
Q 003531 641 PD 642 (812)
Q Consensus 641 p~ 642 (812)
|+
T Consensus 151 ~~ 152 (192)
T d1hh8a_ 151 SE 152 (192)
T ss_dssp CS
T ss_pred CC
T ss_conf 98
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3.5e-06 Score=54.37 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=10.7
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 98318778999999998536888
Q 003531 620 CKIHKNVELGEKAANRLFELDPD 642 (812)
Q Consensus 620 ~~~~g~~~~a~~~~~~~~~~~p~ 642 (812)
+...++.+.|...++++.+++|.
T Consensus 209 ~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 209 QLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 99846599999999999975977
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1.3e-07 Score=63.91 Aligned_cols=111 Identities=7% Similarity=-0.074 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHH
Q ss_conf 9836899999999920859999999999888409998-7559999999984229979999999859-9999-99799999
Q 003531 540 PNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAM 616 (812)
Q Consensus 540 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 616 (812)
|+...+......+...|++++|+..|...... .| +...|..++.+|.+.|++++|...++++ .+.| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 64999999999999869999999999999985---999899998178987410000012478888887188738999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 9999831877899999999853688886304527303
Q 003531 617 LGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANI 653 (812)
Q Consensus 617 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 653 (812)
+.++...|+++.|...++++++++|++...+...+..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999987999999999999987495567989999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=2.6e-07 Score=61.87 Aligned_cols=83 Identities=10% Similarity=-0.097 Sum_probs=28.2
Q ss_pred HHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCH
Q ss_conf 999991199999999997339---99968999999999857998999999999782999998-36899999999920859
Q 003531 483 IDMYAKCGAVGTARALFDMMN---ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLV 558 (812)
Q Consensus 483 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 558 (812)
...|.+.|++++|...|+... ..+...|..+..+|...|++++|+..|++.++ +.|+ ..+|..+..++...|++
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~ 88 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESY 88 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999869999999999999985999899998178987410000012478888887--1887389999999999987999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 003531 559 EEGIHYFTS 567 (812)
Q Consensus 559 ~~a~~~~~~ 567 (812)
++|...|+.
T Consensus 89 ~~A~~~~~~ 97 (201)
T d2c2la1 89 DEAIANLQR 97 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=1.4e-05 Score=50.38 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=10.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999857998999999999782
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLE 535 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (812)
+..+...|...|++++|+..|+++..
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89999999981739999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.2e-06 Score=57.54 Aligned_cols=101 Identities=9% Similarity=0.045 Sum_probs=48.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 999920859999999999888409998-7559999999984229979999999859-9999-997999999999831877
Q 003531 550 SACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNV 626 (812)
Q Consensus 550 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 626 (812)
..+.+.|++++|+..|++..+. .| +...|..++.++...|++++|...++++ ...| +...|..++.++...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 9999958999999986602110---0011333245678887405421288889999987544668779999999994999
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 899999999853688886304527303
Q 003531 627 ELGEKAANRLFELDPDEGGYHVLLANI 653 (812)
Q Consensus 627 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 653 (812)
++|...+++++.++|++...+..+..+
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999998999987299979999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.2e-05 Score=50.85 Aligned_cols=117 Identities=9% Similarity=0.001 Sum_probs=59.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99208599999999998884099987559999999984229979999999859-9999-997999999999831877899
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELG 629 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 629 (812)
+...|++++|++.|..+ .+|+...+..++.++...|++++|.+.|++. .+.| +...|..++.++...|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99877999999999864-----8988999999999999858914678789999998552346678899999854249999
Q ss_pred HHHHHHHHCCCCCC----------------CCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99999985368888----------------630452730321048923899999999876
Q 003531 630 EKAANRLFELDPDE----------------GGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 630 ~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
...++++++..|.+ ..++..++.+|...|++++|.+.+..+.+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999998672673678998665436305889999999999978999999999999836
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.6e-06 Score=56.57 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=38.2
Q ss_pred HHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 99984229979999999859-9999-997999999999831877899999999853688886304527303210489238
Q 003531 585 VDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDK 662 (812)
Q Consensus 585 ~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 662 (812)
+..+.+.|++++|...|+++ ...| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999969999999999998861996013430001101100001121001346777402202677889999998127999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999987
Q 003531 663 LAKVRTIMEK 672 (812)
Q Consensus 663 a~~~~~~~~~ 672 (812)
|...++...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.8e-06 Score=56.25 Aligned_cols=105 Identities=11% Similarity=0.120 Sum_probs=78.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHC
Q ss_conf 999999920859999999999888409998-7559999999984229979999999859-9999-997999999999831
Q 003531 547 CAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIH 623 (812)
Q Consensus 547 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 623 (812)
.-...+...|++++|+..|+...+. .| +...|..++.+|...|++++|...++++ ...| +...|..++..+...
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999999969999999999998861---9960134300011011000011210013467774022026778899999981
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 8778999999998536888863045273032
Q 003531 624 KNVELGEKAANRLFELDPDEGGYHVLLANIY 654 (812)
Q Consensus 624 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 654 (812)
|++++|+..++++++++|+++.++..+.++-
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 2799999999999984989899999999783
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2.3e-06 Score=55.64 Aligned_cols=90 Identities=16% Similarity=0.024 Sum_probs=50.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 999984229979999999859-9999-99799999999983187789999999985368888630452730321048923
Q 003531 584 MVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWD 661 (812)
Q Consensus 584 l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 661 (812)
.+..+.+.|++++|...|+++ ...| +...|..++..+...|+++.|...++++++++|++..++..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999995899999998660211000113332456788874054212888899999875446687799999999949999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 899999999876
Q 003531 662 KLAKVRTIMEKK 673 (812)
Q Consensus 662 ~a~~~~~~~~~~ 673 (812)
+|...+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999989999872
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.2e-05 Score=50.72 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 9999999984229979999999859-9999-9979999999998318778999999998536888863045273032104
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 580 ~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
.|..++.+|.+.|++++|...+++. .+.| +...|..++.++...|+++.|...++++++++|++..+...+..+....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999886421101100000001002231034677799998722299999999999972989899999999999999
Q ss_pred CCCH
Q ss_conf 8923
Q 003531 658 SMWD 661 (812)
Q Consensus 658 g~~~ 661 (812)
+...
T Consensus 144 ~~~~ 147 (170)
T d1p5qa1 144 RRQL 147 (170)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=7.3e-06 Score=52.28 Aligned_cols=62 Identities=8% Similarity=-0.074 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99999999983187789999999985368888630452730321048923899999999876
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
++..+..+|.+.|+++.|+..++++++++|+++.++..++.+|...|++++|...++.+.+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999886421101100000001002231034677799998722299999999999972
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.17 E-value=3.4e-05 Score=47.79 Aligned_cols=60 Identities=7% Similarity=-0.043 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999998318778999999998536888863045273032104892389999999987
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 672 (812)
+..+...+.+.|+++.|+..++++++++|++..+|..++.+|...|++++|...++...+
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 961999999846530111010001000000012467768999996899999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.14 E-value=3.4e-05 Score=47.78 Aligned_cols=81 Identities=9% Similarity=0.031 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 9999999984229979999999859-9999-9979999999998318778999999998536888863045273032104
Q 003531 580 HYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAA 657 (812)
Q Consensus 580 ~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 657 (812)
.|..+..+|.+.|++++|...+++. ...| +...|..++.++...|+++.|...++++++++|++..+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985989899999999999999
Q ss_pred CCC
Q ss_conf 892
Q 003531 658 SMW 660 (812)
Q Consensus 658 g~~ 660 (812)
+..
T Consensus 146 ~~~ 148 (168)
T d1kt1a1 146 KEH 148 (168)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 869
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.6e-06 Score=56.66 Aligned_cols=226 Identities=6% Similarity=-0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999999752898889-13277599998520637899999999998299875649999999999119999999999733
Q 003531 424 EALNYFCKMRSKNIKPD-SFTMVSVIPALAELSVIRYAKWIHALVIRSCFEKNVFVMTALIDMYAKCGAVGTARALFDMM 502 (812)
Q Consensus 424 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 502 (812)
+|.+.|++... ++|+ ...+..+..++...++++++ ++.++... .......-+....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d---p~~a~~~~~e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD---LEYALDKKVEQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC---HHHHHHHTHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987--1999799995199999997629999---99998749---3019998579999999999999999985
Q ss_pred C------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9------99968999999999857998999999999782999998-3689999999992085999999999988840999
Q 003531 503 N------ERHVTTWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIE 575 (812)
Q Consensus 503 ~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 575 (812)
. ......-......+...+.++.|+..+.+... +.|+ ...+..+...+...|+.++|...+......
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 149 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---- 149 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH----
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC----
T ss_conf 616458437999999999999999999999999999878--99113999998579987589999999999988278----
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 87559999999984229979999999859-9999-997999999999831877899999999853688886304527303
Q 003531 576 PVMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANI 653 (812)
Q Consensus 576 p~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 653 (812)
.....+..+++++...|++++|...++++ ...| +...|+.|+..+...|+..+|...+.+++...|..+.++..|+.+
T Consensus 150 ~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999999999999802478999999999987899659999999999986999999999999981799978999999999
Q ss_pred HHHCCCCHHH
Q ss_conf 2104892389
Q 003531 654 YAAASMWDKL 663 (812)
Q Consensus 654 ~~~~g~~~~a 663 (812)
+.+..+..++
T Consensus 230 ~~~~~~~~~~ 239 (497)
T d1ya0a1 230 LSKALESRDE 239 (497)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHHHH
T ss_conf 9875301544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=2.2e-05 Score=49.01 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 559999999984229979999999859-9999-9979999999998318778999999998536888863045273032
Q 003531 578 MDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIY 654 (812)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 654 (812)
...+..++.++.+.|++++|+..++++ .+.| +...|..++.++...|+++.|+..++++++++|++..+...+..++
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999989999986402101366655443100022367776999999804799999999999985989999999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=7e-06 Score=52.36 Aligned_cols=105 Identities=12% Similarity=-0.040 Sum_probs=78.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCH---HHHHHHHHHC-CCCCCH---HHHHHHH
Q ss_conf 9999999920859999999999888409998-755999999998422997---9999999859-999999---7999999
Q 003531 546 LCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRL---NEAWDFIQKM-PIEPGI---TVFGAML 617 (812)
Q Consensus 546 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~---~eA~~~~~~~-~~~p~~---~~~~~ll 617 (812)
..+++.+...+++++|.+.|+..... .| +..++..++.++.+.++. ++|..+++++ ...|+. .+|..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 77988736999999999999998832---999899999999999985126789999999999986069931999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 999831877899999999853688886304527303
Q 003531 618 GACKIHKNVELGEKAANRLFELDPDEGGYHVLLANI 653 (812)
Q Consensus 618 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 653 (812)
.+|...|+++.|+..++++++++|++..+...+..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999997316999999999997690989999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=2.2e-05 Score=49.04 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99799999999983187789999999985368888630452730321048923899999999876
Q 003531 609 GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 609 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
....|..+...+.+.|+++.|+..++++++++|+++.+|..++.+|...|++++|...++.+.+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 39999989999986402101366655443100022367776999999804799999999999985
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.05 E-value=5.6e-06 Score=53.01 Aligned_cols=89 Identities=16% Similarity=-0.022 Sum_probs=69.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99999984229979999999859-9999-997999999999831877899999999853688886304527303210489
Q 003531 582 GAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASM 659 (812)
Q Consensus 582 ~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 659 (812)
-.++..+.+.|++++|...+++. ...| +...|..++..+...|+++.|+..++++++++|++..++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred CHHHHHHHHHH
Q ss_conf 23899999999
Q 003531 660 WDKLAKVRTIM 670 (812)
Q Consensus 660 ~~~a~~~~~~~ 670 (812)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=7.9e-05 Score=45.36 Aligned_cols=62 Identities=5% Similarity=-0.077 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99999999983187789999999985368888630452730321048923899999999876
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
++..+..++...|+++.|+..++++++++|++...+..++.+|...|++++|...+..+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.7e-05 Score=47.53 Aligned_cols=92 Identities=8% Similarity=0.051 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC-------CHHHHH
Q ss_conf 999999984229979999999859-9999-9979999999998318778999999998536888863-------045273
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGG-------YHVLLA 651 (812)
Q Consensus 581 ~~~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 651 (812)
+..++..+.+.|++++|...|++. ...| +...|..+..++...|+++.|+..++++++++|++.. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999985999999999999988496458999868899988186077899999999868012788988999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 032104892389999999987
Q 003531 652 NIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 652 ~~~~~~g~~~~a~~~~~~~~~ 672 (812)
.++...+++++|...+.+...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHH
T ss_conf 999993889999999999984
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=9.5e-06 Score=51.50 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=52.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHH
Q ss_conf 9999984229979999999859-9999-99799999999983---187789999999985368888--630452730321
Q 003531 583 AMVDLLGRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKI---HKNVELGEKAANRLFELDPDE--GGYHVLLANIYA 655 (812)
Q Consensus 583 ~l~~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~ 655 (812)
.++..+...+++++|.+.|++. ...| +..++..+.+++.. .++.+.|+..++++++.+|.+ ..++..|+.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 79887369999999999999988329998999999999999851267899999999999860699319999999999999
Q ss_pred HCCCCHHHHHHHHHHHHC
Q ss_conf 048923899999999876
Q 003531 656 AASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 656 ~~g~~~~a~~~~~~~~~~ 673 (812)
..|++++|.+.++++.+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 973169999999999976
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.93 E-value=1e-04 Score=44.68 Aligned_cols=125 Identities=8% Similarity=-0.042 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999985799899999999978299999836899999999920859999999999888409998755999999998
Q 003531 509 TWNVMIDGYGTHGLGKAAVELFNKMLEGPTKPNDITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLL 588 (812)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 588 (812)
.+......+.+.|++.+|+..|++++.. -|..... .-......... .....|..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCHHHH-----------HHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_conf 9999999999959999999999987760--7300111-----------05778876310--------7889996199999
Q ss_pred HHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 4229979999999859-9999-9979999999998318778999999998536888863045273032
Q 003531 589 GRAGRLNEAWDFIQKM-PIEP-GITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIY 654 (812)
Q Consensus 589 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 654 (812)
.+.|++++|.+.++++ ...| +...|..++.++...|+++.|...++++++++|++..+...+..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98465301110100010000000124677689999968999999999999982989899999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.84 E-value=0.00073 Score=38.93 Aligned_cols=113 Identities=15% Similarity=-0.010 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHH
Q ss_conf 5999999999988840999875599999999842----29979999999859999999799999999983----187789
Q 003531 557 LVEEGIHYFTSLKKDYGIEPVMDHYGAMVDLLGR----AGRLNEAWDFIQKMPIEPGITVFGAMLGACKI----HKNVEL 628 (812)
Q Consensus 557 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 628 (812)
....+...+..... ..+...+..++..+.. ......+..+++......+......+...+.. ..+.+.
T Consensus 125 ~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 125 DFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHH
T ss_conf 15778887555200----11101044555564068874334220001221132322223322113121267654310344
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHH----CCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999853688886304527303210----4892389999999987698
Q 003531 629 GEKAANRLFELDPDEGGYHVLLANIYAA----ASMWDKLAKVRTIMEKKGL 675 (812)
Q Consensus 629 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~ 675 (812)
|+..++++.+.+ ++..+..|+.+|.. ..+.++|.+++++..+.|.
T Consensus 201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 454676653036--8999999999998399976189999999999998769
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=0.00011 Score=44.39 Aligned_cols=128 Identities=15% Similarity=0.036 Sum_probs=90.4
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 9857998999999999782999998-36899999999920859999999999888409998-755999999998422997
Q 003531 517 YGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRL 594 (812)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~ 594 (812)
....|++++|+..+++.++ ..|+ ...+..+...++..|++++|...++...+ +.| +...+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9888899999999999999--7899999999999999987999999999999998---6997389999999999834663
Q ss_pred HHHHHHHHHC--CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 9999999859--99999-9799999999983187789999999985368888630452
Q 003531 595 NEAWDFIQKM--PIEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVL 649 (812)
Q Consensus 595 ~eA~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 649 (812)
+++..-.... ...|+ ...+......+...|+.+.|...++++.++.|+.+.....
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 7899875444203586479999999999996799899999999998339999810015
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.61 E-value=0.00028 Score=41.69 Aligned_cols=82 Identities=10% Similarity=0.015 Sum_probs=33.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 99857998999999999782999998-36899999999920859999999999888409998-75599999999842299
Q 003531 516 GYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGR 593 (812)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~ 593 (812)
.+.+.|++++|+..|++.+. ..|+ ...|..+..++.+.|++++|+..|+...+ +.| +...+..++..|...|+
T Consensus 25 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHCCC
T ss_conf 99987605899998861011--2111100123354564101258774100000111---111000003789999999789
Q ss_pred HHHHHHHHH
Q ss_conf 799999998
Q 003531 594 LNEAWDFIQ 602 (812)
Q Consensus 594 ~~eA~~~~~ 602 (812)
+++|.+.++
T Consensus 100 ~~~A~~~l~ 108 (112)
T d1hxia_ 100 ANAALASLR 108 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=3.4e-05 Score=47.80 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=64.3
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 57998999999999782999998-3689999999992----------0859999999999888409998-7559999999
Q 003531 519 THGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSH----------SGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVD 586 (812)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 586 (812)
+.+.+++|+..|++.++ +.|+ ...+..+..++.. .+.+++|+..|++..+ +.| +...|..++.
T Consensus 9 r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHH
T ss_conf 87369999999999986--18831089999999998762133336778878889999999887---30120587766899
Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 98422997999999985999999979999999998318778999999998536888863045273032104892389999
Q 003531 587 LLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKV 666 (812)
Q Consensus 587 ~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 666 (812)
+|...|++. ++... ..++++.|...++++++++|++..+...|+... .+.++
T Consensus 84 ~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQL 135 (145)
T ss_dssp HHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHH
T ss_pred HHHHCCCCH------------HHHHH---------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-------HHHHH
T ss_conf 998701011------------35788---------988678763121100025988899999999999-------97978
Q ss_pred HHHHHHCCC
Q ss_conf 999987698
Q 003531 667 RTIMEKKGL 675 (812)
Q Consensus 667 ~~~~~~~g~ 675 (812)
+.++.++|+
T Consensus 136 ~~e~~k~~~ 144 (145)
T d1zu2a1 136 HAEAYKQGL 144 (145)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHHC
T ss_conf 999998735
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.50 E-value=0.00053 Score=39.86 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999985799899999999978299999-8368999999999208599999999998
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLEGPTKP-NDITFLCAISACSHSGLVEEGIHYFTSL 568 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 568 (812)
+..+...+...|++++|+..+++++. ..| +...|..++.++...|+..+|++.|+.+
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999887990578999999998--49851999999999999855799999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0015 Score=36.78 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=45.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHH
Q ss_conf 99999999857998999999999782999998-368999999999208599999999998884099987-----559999
Q 003531 510 WNVMIDGYGTHGLGKAAVELFNKMLEGPTKPN-DITFLCAISACSHSGLVEEGIHYFTSLKKDYGIEPV-----MDHYGA 583 (812)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ 583 (812)
+..+...+...|++++|+..|++.++ +.|+ ...+..+..++...|++++|+..++.+.....-.+. ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999985999999999999988--4964589998688999881860778999999998680127889889999999
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q ss_conf 99998422997999999985
Q 003531 584 MVDLLGRAGRLNEAWDFIQK 603 (812)
Q Consensus 584 l~~~~~~~g~~~eA~~~~~~ 603 (812)
++..+...+++++|.+.+++
T Consensus 85 lg~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHH
T ss_conf 99999993889999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.37 E-value=0.00011 Score=44.31 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=61.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 9920859999999999888409998-755999999998422997999999985999999979999999998318778999
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGE 630 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 630 (812)
+.+.+.+++|+..|+...+. .| +...+..++.++...++...+.+ ..+.++.|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHH
T ss_conf 99873699999999999861---88310899999999987621333367----------------------788788899
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCC-----------CHHHHHHHHHHHHC
Q ss_conf 99999853688886304527303210489-----------23899999999876
Q 003531 631 KAANRLFELDPDEGGYHVLLANIYAAASM-----------WDKLAKVRTIMEKK 673 (812)
Q Consensus 631 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~~~~~ 673 (812)
..++++++++|+++.+|..++.+|...|+ +++|.+.+++..+.
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999998873012058776689999870101135788988678763121100025
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.36 E-value=0.00058 Score=39.57 Aligned_cols=29 Identities=7% Similarity=-0.214 Sum_probs=12.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999831877899999999853688
Q 003531 613 FGAMLGACKIHKNVELGEKAANRLFELDP 641 (812)
Q Consensus 613 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 641 (812)
+..++.++...|++++|...+++++++.|
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75269999988888888999999998668
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.33 E-value=0.0029 Score=34.97 Aligned_cols=62 Identities=6% Similarity=-0.149 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-------C----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999999999831877899999999853688-------8----8630452730321048923899999999876
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDP-------D----EGGYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
.|..+..++...|+++.|...+++++++.| + ....+..++.+|...|++++|...+++..+.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999828630015766435530431002455443112787752699999888888889999999986
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=0.0047 Score=33.51 Aligned_cols=60 Identities=10% Similarity=-0.105 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999999831877899999999853688886304527303210489238999999998
Q 003531 612 VFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIME 671 (812)
Q Consensus 612 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 671 (812)
.|..+...+...|+++.|...++++++.+|.+...|..++.+|...|++.+|.+.|+...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999887990578999999998498519999999999998557999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.16 E-value=0.00014 Score=43.65 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=81.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHH
Q ss_conf 9920859999999999888409998-7559999999984229979999999859-99999-9799999999983187789
Q 003531 552 CSHSGLVEEGIHYFTSLKKDYGIEP-VMDHYGAMVDLLGRAGRLNEAWDFIQKM-PIEPG-ITVFGAMLGACKIHKNVEL 628 (812)
Q Consensus 552 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 628 (812)
....|++++|+..+++.++. .| +...+..++.+|+..|++++|...++.. ...|+ ...+..+...+...+..+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 98888999999999999997---899999999999999987999999999999998699738999999999983466378
Q ss_pred HHHHHHHHH-CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 999999985-3688886304527303210489238999999998769
Q 003531 629 GEKAANRLF-ELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKG 674 (812)
Q Consensus 629 a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 674 (812)
+.....+.. ..+|+....+...+..+...|+.++|...+..+.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 99875444203586479999999999996799899999999998339
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.03 E-value=0.0069 Score=32.40 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=11.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999999099903899999999984
Q 003531 308 WNSMIAAYVEGGNPEEAMRIFQKMLDQ 334 (812)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 334 (812)
+..+...+.+.+++++|++.|++..+.
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~ 31 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDL 31 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999877999999999999978
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.91 E-value=0.0088 Score=31.70 Aligned_cols=11 Identities=9% Similarity=0.126 Sum_probs=3.4
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999842299
Q 003531 583 AMVDLLGRAGR 593 (812)
Q Consensus 583 ~l~~~~~~~g~ 593 (812)
++.++|...++
T Consensus 285 al~~lyie~~d 295 (336)
T d1b89a_ 285 SLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHCCCH
T ss_conf 99999867124
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0021 Score=35.80 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC----C----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 999999984229979999999859----9----9999-979999999998318778999999998536888863045273
Q 003531 581 YGAMVDLLGRAGRLNEAWDFIQKM----P----IEPG-ITVFGAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLA 651 (812)
Q Consensus 581 ~~~l~~~~~~~g~~~eA~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 651 (812)
+-.++..+.+.|++++|...++++ + ..++ ..++..++.++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999997799999999999999886530147647899998726888657739888788779886929799999999
Q ss_pred H
Q ss_conf 0
Q 003531 652 N 652 (812)
Q Consensus 652 ~ 652 (812)
.
T Consensus 88 ~ 88 (95)
T d1tjca_ 88 Y 88 (95)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.0046 Score=33.60 Aligned_cols=59 Identities=7% Similarity=-0.149 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999983187789999999985368888-------63045273032104892389999999987
Q 003531 614 GAMLGACKIHKNVELGEKAANRLFELDPDE-------GGYHVLLANIYAAASMWDKLAKVRTIMEK 672 (812)
Q Consensus 614 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 672 (812)
..++..+...|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999779999999999999988653014764789999872688865773988878877988
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.93 E-value=0.033 Score=27.88 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 3999367998526699999448999999998059905899999
Q 003531 84 KYNSLSDAARVFEPIPDKLDALYHTMLKGYAKFASLDDAVSFL 126 (812)
Q Consensus 84 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 126 (812)
+.|.++.|..++..+.. |..++..+.+.+++..|.+++
T Consensus 26 ~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~ 63 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGA 63 (336)
T ss_dssp ---CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHCCC-----HHHHHHHHHHHCCHHHHHHHH
T ss_conf 78779999999986789-----999999997031599999999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.11 Score=24.31 Aligned_cols=63 Identities=6% Similarity=-0.077 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 7999999999831---877899999999853688886-30452730321048923899999999876
Q 003531 611 TVFGAMLGACKIH---KNVELGEKAANRLFELDPDEG-GYHVLLANIYAAASMWDKLAKVRTIMEKK 673 (812)
Q Consensus 611 ~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 673 (812)
.+.-.+.++..+. .+.+.|+.++++++..+|.+. ..+..|+-.|.+.|++++|.+.++.+.+.
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0199999999827968899999999999985495059999999999999873299999999999823
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=84.77 E-value=0.67 Score=19.16 Aligned_cols=15 Identities=7% Similarity=-0.239 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 923899999999876
Q 003531 659 MWDKLAKVRTIMEKK 673 (812)
Q Consensus 659 ~~~~a~~~~~~~~~~ 673 (812)
+.++|.+++++..+.
T Consensus 110 d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 110 NEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 899999999999987
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.07 E-value=0.78 Score=18.70 Aligned_cols=119 Identities=11% Similarity=0.004 Sum_probs=58.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 99999989129946899985429999914199999999937995799999999987699999202985999885349918
Q 003531 177 TGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGRRGDFITIVSILPAVANVGSLR 256 (812)
Q Consensus 177 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 256 (812)
...+..+.+.+++......+...+. +...--....+....|+...|...+...-..|... ....
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p~-~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~-p~~c-------------- 139 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKPG-TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-PNAC-------------- 139 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-CTHH--------------
T ss_pred HHHHHHHHHCCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHH--------------
T ss_conf 9999998765688999976668999-99999999999987598488999999998547878-3589--------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999999958998446998999988807996889999832899990059999999
Q 003531 257 IGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARLVFDGMKSRNVVSWNSMIAA 314 (812)
Q Consensus 257 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 314 (812)
..++....+.|. .+....-.-+......|+...|..+...+...........+..
T Consensus 140 --~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l 194 (450)
T d1qsaa1 140 --DKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISL 194 (450)
T ss_dssp --HHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf --999999874478-9899999999999886981569988751785589999999998
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=80.26 E-value=0.98 Score=18.04 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999999983187789999999985368888630452730321048923899999999876984
Q 003531 614 GAMLGACKIHKNVELGEKAANRLFELDPDEGGYHVLLANIYAAASMWDKLAKVRTIMEKKGLQ 676 (812)
Q Consensus 614 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 676 (812)
+..+....++|.-+.-.++.+.+++.+.-++....-++++|.+.|...++..+..++-++|++
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999998260878999999987537998799999999998852244489999999997599
|