Citrus Sinensis ID: 003551

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-
MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSSL
ccccccccccccccccccccHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEEEEccccEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccEEEEEEcccccccHHHHccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHEEEcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
cccHHHccccccccccEEEcHHHHccccHHHcccccHHHHHHHHHccccccccccccccccccccEEEEccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccEcccccccHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHcEEcccccccccHHHHHHHHHHccccccEcccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccEccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccc
misltdicmkplgqdcatQSVLQYFkmdpknfddfggveHVKYCFQHYtstescmsafkgpldpstalggfsgnnysEASAFVVTypvnnavdregnETKKAVAWEKAFVQLAKDEllpmvqsknltlafssESSIEEELKRESTADAITIVISYLVMFAYISltlgdtphlssfyISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQqlelpletRISNALVEVGPSITLASLSEVLAFAVgsfipmpacRVFSMFAALAVLLDFLLQITAFVALIVFDFLRaedkrvdcipclklsssyadsdkgigqrkpGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRiepgleqkivlprdsylQGYFNNisehlrigpplyFVVKNynyssesrqtnqlcsisqcdsNSLLNEIsraslipqssyiakpaaswLDDFLvwispeafgccrkftngsycppddqppccpsgqsscgsagvckdcttcfhhsdllkdrpstiqfkeklpwflnalpsascakgghgaytnsvdlkgyengivqassfrtyhtplnrqiDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIThafsvssgdkNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPvvlsvfgppsrcmlverqeerpsvssl
misltdicmkplgqDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLklsssyadsdkgiGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHafsvssgdkNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRcmlverqeerpsvssl
MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYIsskvllglsgvvlvmlsvlgsvgFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMfaalavlldfllQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYcppddqppccpsgqsscgsAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYlalvllgflhglvflpvvlSVFGPPSRCMLVERQEERPSVSSL
****TDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTL*****************ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSS*****NQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP**************CGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS**********ALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCML*************
MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL**PL*TRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP*******************
MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFS***********ESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYS*********CSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP*************GVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVE***********
MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSS************KPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR****************
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MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query811 2.2.26 [Sep-21-2011]
O356041277 Niemann-Pick C1 protein O yes no 0.938 0.595 0.397 1e-167
P569411277 Niemann-Pick C1 protein O yes no 0.938 0.595 0.403 1e-166
O151181278 Niemann-Pick C1 protein O yes no 0.950 0.603 0.394 1e-166
Q6T3U31331 Niemann-Pick C1-like prot no no 0.956 0.583 0.385 1e-140
Q6T3U41333 Niemann-Pick C1-like prot no no 0.956 0.582 0.372 1e-128
Q9UHC91359 Niemann-Pick C1-like prot no no 0.960 0.573 0.369 1e-128
Q122001170 Niemann-Pick type C-relat yes no 0.858 0.594 0.318 1e-98
Q191271383 Niemann-Pick C1 protein h yes no 0.954 0.559 0.246 8e-74
P343891274 Niemann-Pick C1 protein h no no 0.927 0.590 0.269 3e-69
Q61115 1434 Protein patched homolog 1 no no 0.273 0.154 0.344 5e-29
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2 Back     alignment and function desciption
 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 326/821 (39%), Positives = 501/821 (61%), Gaps = 60/821 (7%)

Query: 2    ISLTDICMKPL---GQDCATQSVLQYFK-----MDPKNFDDF----GGVEHVKYCFQHYT 49
            ++L DIC+ PL    ++C   SVL YF+     +D +  DDF        H  YC +   
Sbjct: 462  VTLQDICVAPLSPYNKNCTIMSVLNYFQNSHAVLDSQVGDDFYIYADYHTHFLYCVRAPA 521

Query: 50   STES-------CMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKA 102
            S          C+  F GP+ P   LGG+   NY+ A+A V+T+PVNN  + +    ++A
Sbjct: 522  SLNDTSLLHGPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTERLQRA 580

Query: 103  VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYI 162
             AWEK F+   K+      ++ NLT++F++E SIE+EL RES +D  T++ISY+VMF YI
Sbjct: 581  WAWEKEFISFVKN-----YKNPNLTISFTAERSIEDELNRESNSDVFTVIISYVVMFLYI 635

Query: 163  SLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVL 222
            SL LG     S   + SK+ LG++G+++V+ SV  S+G FS +G+  TLI++EVIPFLVL
Sbjct: 636  SLALGHIQSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVIPFLVL 695

Query: 223  AVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 280
            AVGVDN+ ILV   +R +   E  L+ ++   L EV P++ L+S SE  AF  G+   MP
Sbjct: 696  AVGVDNIFILVQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGALSSMP 755

Query: 281  ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 340
            A   FS+FA +AVL+DFLLQIT FV+L+  D  R E   +D + C++       +D G G
Sbjct: 756  AVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNHLDILCCVR------GADDGQG 809

Query: 341  QR-KPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRD 399
                   L R+ K   A +L    ++  V+++FV     S+A+  +++ GL+Q + +P D
Sbjct: 810  SHASESYLFRFFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVAVVNKVDIGLDQSLSMPND 869

Query: 400  SYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASL 458
            SY+  YF +++++L  GPP+YFV++  YNYSS   Q N +C    CD++SL+ +I  A+ 
Sbjct: 870  SYVIDYFKSLAQYLHSGPPVYFVLEEGYNYSSRKGQ-NMVCGGMGCDNDSLVQQIFNAAE 928

Query: 459  IPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 518
            +   + +    +SW+DD+  W+SP++  CCR +                     C ++ +
Sbjct: 929  LDTYTRVGFAPSSWIDDYFDWVSPQS-SCCRLYN---------------VTHQFCNASVM 972

Query: 519  CKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGI 578
               C  C   +   K RP   +F + LP FL+  P+  C KGGH AY ++V++ G ++  
Sbjct: 973  DPTCVRCRPLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVG-DDTY 1031

Query: 579  VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ-----MEIFPYSVFYMYFEQYL 633
            + A+ F TYHT L    DY ++M+ AR  +S ++++++       +FPYSVFY+++EQYL
Sbjct: 1032 IGATYFMTYHTILKTSADYTDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYL 1091

Query: 634  DIWRTALINLAIAIGAVFVVCLIT-TCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAV 692
             I    + NL++++G++F+V L+   C  WS+ I+ + + MI+V++ GVM +  I LNAV
Sbjct: 1092 TIIDDTIFNLSVSLGSIFLVTLVVLGCELWSAVIMCITIAMILVNMFGVMWLWGISLNAV 1151

Query: 693  SVVNLVMAVGIAVEFCVHITHAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIV 751
            S+VNLVM+ GI+VEFC HIT AF++S+ G +  R +EAL  MG+SVFSGITLTK  G++V
Sbjct: 1152 SLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSGITLTKFGGIVV 1211

Query: 752  LCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 792
            L F+++++F ++YF+MYLA+VLLG  HGL+FLPV+LS  GP
Sbjct: 1212 LAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1252
Involved in the intracellular trafficking of cholesterol. May play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural and functional integrity of nerve terminals.
Mus musculus (taxid: 10090)
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1 Back     alignment and function description
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2 Back     alignment and function description
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1 PE=1 SV=2 Back     alignment and function description
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2 PE=3 SV=2 Back     alignment and function description
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query811
297745553 1242 unnamed protein product [Vitis vinifera] 0.998 0.652 0.883 0.0
359491908 1309 PREDICTED: niemann-Pick C1 protein-like 0.998 0.618 0.883 0.0
255539230 1235 hedgehog receptor, putative [Ricinus com 0.987 0.648 0.871 0.0
224086046 1274 cholesterol transport protein [Populus t 0.988 0.629 0.854 0.0
449455603 1244 PREDICTED: niemann-Pick C1 protein-like 0.996 0.649 0.848 0.0
297744484 2090 unnamed protein product [Vitis vinifera] 1.0 0.388 0.826 0.0
359474967 1234 PREDICTED: niemann-Pick C1 protein [Viti 1.0 0.657 0.826 0.0
356517933 1283 PREDICTED: niemann-Pick C1 protein-like 0.993 0.628 0.836 0.0
356509590 1257 PREDICTED: niemann-Pick C1 protein-like 0.993 0.641 0.831 0.0
449485264 1296 PREDICTED: niemann-Pick C1 protein-like 0.987 0.618 0.830 0.0
>gi|297745553|emb|CBI40718.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1478 bits (3826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/810 (88%), Positives = 776/810 (95%)

Query: 1    MISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKG 60
            MISLTDICMKPLGQDCATQSVLQYFKMD +N+DD+GGV+HV+YCFQHYTS ++CMSAFK 
Sbjct: 431  MISLTDICMKPLGQDCATQSVLQYFKMDSRNYDDYGGVQHVEYCFQHYTSADTCMSAFKA 490

Query: 61   PLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPM 120
            PLDPSTALGGFSGNNYSEASAF+VTYPVNNA+D+EGNET KAVAWEKAF+Q+ KD+LLPM
Sbjct: 491  PLDPSTALGGFSGNNYSEASAFIVTYPVNNAIDKEGNETGKAVAWEKAFIQIVKDDLLPM 550

Query: 121  VQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSK 180
            +QSKNLTL+FSSESSIEEELKRESTADAITI ISYLVMFAYISLTLGDTP LSSFYISSK
Sbjct: 551  MQSKNLTLSFSSESSIEEELKRESTADAITISISYLVMFAYISLTLGDTPRLSSFYISSK 610

Query: 181  VLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ 240
            + LGL+GV+LVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ 
Sbjct: 611  IFLGLAGVMLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQP 670

Query: 241  LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 300
            LELPLE RISNALVEVGPSITLASL+EVLAFAVG+FIPMPACRVFSMFAALAVLLDFLLQ
Sbjct: 671  LELPLEGRISNALVEVGPSITLASLAEVLAFAVGTFIPMPACRVFSMFAALAVLLDFLLQ 730

Query: 301  ITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 360
            +TAFVALIVFDFLRAED+R+DC PC+K+SSSYADSDKGIGQRKPGLLARYMKEVHA ILS
Sbjct: 731  VTAFVALIVFDFLRAEDRRIDCFPCIKISSSYADSDKGIGQRKPGLLARYMKEVHAPILS 790

Query: 361  LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLY 420
            LWGVK+ VIS+FVAF LASIALCTRIEPGLEQKIVLPRDSYLQGYFNN+SE+LRIGPPLY
Sbjct: 791  LWGVKLVVISVFVAFALASIALCTRIEPGLEQKIVLPRDSYLQGYFNNVSEYLRIGPPLY 850

Query: 421  FVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWI 480
            FVVKNYNYSSESR TNQLCSISQC+S+SLLNEI+RASLIP+SSYIAKPAASWLDDFLVWI
Sbjct: 851  FVVKNYNYSSESRHTNQLCSISQCNSDSLLNEIARASLIPESSYIAKPAASWLDDFLVWI 910

Query: 481  SPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQ 540
            SPEAFGCCRKFTNGSYCPP+DQPPCC S   SC   G+CKDCTTCF HSDL  DRPST Q
Sbjct: 911  SPEAFGCCRKFTNGSYCPPNDQPPCCASEDGSCYLNGLCKDCTTCFRHSDLYNDRPSTAQ 970

Query: 541  FKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNS 600
            F+EKLPWFL ALPSA C+KGGHGAYT+SV+LKG+E+GI+QASSFRTYHTPLN+QIDYVNS
Sbjct: 971  FREKLPWFLAALPSADCSKGGHGAYTSSVELKGFESGIIQASSFRTYHTPLNKQIDYVNS 1030

Query: 601  MRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCS 660
            MRAAREF+SRVSDSL+++IFPYSVFYM+FEQYLDIWRTALINLAIAIGAVF+VCL+ TCS
Sbjct: 1031 MRAAREFTSRVSDSLKIQIFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFIVCLVITCS 1090

Query: 661  FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG 720
             WSSAIILLVL MIVVDLMGVMAIL IQLNA+SVVNLVMAVGIAVEFCVHITHAFSVSSG
Sbjct: 1091 LWSSAIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMAVGIAVEFCVHITHAFSVSSG 1150

Query: 721  DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL 780
            D+NQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL
Sbjct: 1151 DRNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL 1210

Query: 781  VFLPVVLSVFGPPSRCMLVERQEERPSVSS 810
            VFLPVVLS+ GPPSRC+L++++E++PS SS
Sbjct: 1211 VFLPVVLSMCGPPSRCVLIDKREDQPSPSS 1240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491908|ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539230|ref|XP_002510680.1| hedgehog receptor, putative [Ricinus communis] gi|223551381|gb|EEF52867.1| hedgehog receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224086046|ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa] gi|222857242|gb|EEE94789.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455603|ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474967|ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|356517933|ref|XP_003527640.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356509590|ref|XP_003523530.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449485264|ref|XP_004157117.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query811
TAIR|locus:20358781272 AT1G42470 [Arabidopsis thalian 0.882 0.562 0.753 2e-294
UNIPROTKB|F1NQT41278 NPC1 "Uncharacterized protein" 0.908 0.576 0.367 5.3e-127
ZFIN|ZDB-GENE-030131-31611276 npc1 "Niemann-Pick disease, ty 0.906 0.576 0.365 2.3e-126
UNIPROTKB|B0JYK21277 NPC1 "Uncharacterized protein" 0.911 0.578 0.355 1.3e-121
ASPGD|ASPL00000510851271 AN2119 [Emericella nidulans (t 0.590 0.376 0.355 6.5e-119
UNIPROTKB|G3V7K51278 Cdig2 "RCG41239" [Rattus norve 0.908 0.576 0.353 9.8e-119
MGI|MGI:10977121277 Npc1 "Niemann Pick type C1" [M 0.903 0.574 0.349 8.8e-118
UNIPROTKB|F1SBB51277 NPC1 "Niemann-Pick C1 protein" 0.909 0.577 0.358 1.8e-117
UNIPROTKB|P569411277 NPC1 "Niemann-Pick C1 protein" 0.909 0.577 0.358 1.8e-117
UNIPROTKB|Q9JLG31277 NPC1 "Niemann-Pick type C1 pro 0.908 0.577 0.353 7.9e-117
TAIR|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2827 (1000.2 bits), Expect = 2.0e-294, P = 2.0e-294
 Identities = 540/717 (75%), Positives = 612/717 (85%)

Query:     1 MISLTDICMKPLGQDCATQSVLQ-YFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFK 59
             M+SLTDICMKPLG+DCATQSVLQ YFKM P+N+DD+GGV+HVKYCF+H+TSTESC+SAFK
Sbjct:   449 MVSLTDICMKPLGEDCATQSVLQQYFKMKPENYDDYGGVDHVKYCFEHFTSTESCLSAFK 508

Query:    60 GPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLP 119
             GPLDP+TALGGFSGN++SEASAF+VTYPV+N VD +GN+T+KAVAWEKAF+QLAKDELLP
Sbjct:   509 GPLDPTTALGGFSGNSFSEASAFLVTYPVDNFVDNKGNKTEKAVAWEKAFIQLAKDELLP 568

Query:   120 MVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYIXX 179
             MVQ+KNLTL+FSSESSIEEELKRESTAD ITI ISYLVMFAYISLTLGD+P L SFYI  
Sbjct:   569 MVQAKNLTLSFSSESSIEEELKRESTADVITIAISYLVMFAYISLTLGDSPRLKSFYITS 628

Query:   180 XXXXXXXXXXXXXXXXXXXXXFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ 239
                                  FFSA+G+KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ
Sbjct:   629 KVLLGLSGVLLVMLSVLGSVGFFSAVGMKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ 688

Query:   240 QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMXXXXXXXXXXXX 299
             + ELPLE RISNAL+EVGPSITLASL+E+LAFAVG+FI MPA RVFSM            
Sbjct:   689 EQELPLERRISNALMEVGPSITLASLAEILAFAVGAFIKMPAVRVFSMFAALAVLLDFLL 748

Query:   300 QITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATIL 359
             QITAFVALIVFDF R EDKRVDC PC+K S S   ++KG+GQRK GLL RYMKEVHA +L
Sbjct:   749 QITAFVALIVFDFRRTEDKRVDCFPCIKTSKSSISAEKGVGQRKAGLLTRYMKEVHAPVL 808

Query:   360 SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPL 419
             S W VKI VI+ F    +A IAL TRIEPGLEQ+IVLP+DSYLQGYFNNIS +LRIGPPL
Sbjct:   809 SHWIVKIVVIAFFFGLAMAGIALSTRIEPGLEQQIVLPQDSYLQGYFNNISTYLRIGPPL 868

Query:   420 YFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVW 479
             YFV+KNYNYSSESR TNQLCSI++C+ NSLLNEI+RASL P+ SYIAKPAASWLDDFLVW
Sbjct:   869 YFVLKNYNYSSESRHTNQLCSINKCNPNSLLNEIARASLTPELSYIAKPAASWLDDFLVW 928

Query:   480 ISPEAFGCCRKFTNGSYXXXXXXXXXXXXXXXXXXXAGVCKDCTTCFHHSDLLKDRPSTI 539
             +SPEAFGCCRKFTNG++                   + VCKDCTTCF H+DL  DRPST 
Sbjct:   929 LSPEAFGCCRKFTNGTFCPPDDQPPCCPPGQTSCGLSEVCKDCTTCFRHADLSSDRPSTT 988

Query:   540 QFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVN 599
             QFKEKLPWFLNALPSA CAKGGHGAY++SVDL+GY NGI+QASSFRTYHTPLN+Q+D+VN
Sbjct:   989 QFKEKLPWFLNALPSADCAKGGHGAYSSSVDLQGYANGIIQASSFRTYHTPLNKQVDFVN 1048

Query:   600 SMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTC 659
             SMRAA+EFS++VS SL+MEI+PYSVFYM+FEQYLDIW+TALINL+IAI AVFVVCLI TC
Sbjct:  1049 SMRAAQEFSAKVSRSLKMEIYPYSVFYMFFEQYLDIWKTALINLSIAIAAVFVVCLIITC 1108

Query:   660 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS 716
             SFWSSAIILLV+ MI++DL+GVMA+  IQLNA+SVVNL+M+VGIAVEFCVHITHAFS
Sbjct:  1109 SFWSSAIILLVIAMIIIDLLGVMAVFHIQLNALSVVNLIMSVGIAVEFCVHITHAFS 1165
GO:0008158 "hedgehog receptor activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|F1NQT4 NPC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3161 npc1 "Niemann-Pick disease, type C1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYK2 NPC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051085 AN2119 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7K5 Cdig2 "RCG41239" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1097712 Npc1 "Niemann Pick type C1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBB5 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P56941 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9JLG3 NPC1 "Niemann-Pick type C1 protein" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002883001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (1263 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
TIGR009171204 TIGR00917, 2A060601, Niemann-Pick C type protein f 0.0
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 6e-58
pfam02460801 pfam02460, Patched, Patched family 4e-48
TIGR009181145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 3e-35
TIGR009181145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 3e-33
pfam02460801 pfam02460, Patched, Patched family 8e-24
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 9e-10
COG1033 727 COG1033, COG1033, Predicted exporters of the RND s 7e-07
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 1e-06
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 8e-06
TIGR00921 719 TIGR00921, 2A067, The (Largely Archaeal Putative) 2e-05
TIGR03480 862 TIGR03480, HpnN, hopanoid biosynthesis associated 4e-05
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 1e-04
TIGR00833 910 TIGR00833, actII, Transport protein 3e-04
pfam03176332 pfam03176, MMPL, MMPL family 4e-04
TIGR00920 889 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co 0.001
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 0.003
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 0.003
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family Back     alignment and domain information 
 Score = 1013 bits (2621), Expect = 0.0
 Identities = 466/811 (57%), Positives = 590/811 (72%), Gaps = 49/811 (6%)

Query: 2    ISLTDICMKPLGQD-CATQSVLQYF-----KMDPKNFDDFGGVEHVKYCFQHYTSTESCM 55
            I+L DIC  PL    C   S   YF     K+DP+N+DD  GV++VKYCF+ +TS ESC+
Sbjct: 422  ITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPENYDDGFGVDYVKYCFECFTSPESCL 481

Query: 56   SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKD 115
            SAF GP+DP+TALGGFSGNN+SEASAFVVT+PVNN    + ++ +KAVAWEKAF+Q AK+
Sbjct: 482  SAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNN-FVNKTDKLEKAVAWEKAFIQFAKN 540

Query: 116  ELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSF 175
             LLP VQ+K L ++FSSE SIE+ELKRESTAD ITI++SYLVMFAYISL+LG +    S 
Sbjct: 541  YLLPNVQAK-LDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSL 599

Query: 176  YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHA 235
            +I SKVLLG+SGV++V+ SV+GSVG FS IG+K+TLIIMEVIPFLVLAVGVDN+ ILV  
Sbjct: 600  FIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQT 659

Query: 236  VKRQQ-----------LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRV 284
             +R +            EL LE ++  AL EVGPSITLASLSE LAF +G+   MPA R 
Sbjct: 660  YQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRA 719

Query: 285  FSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKP 344
            FS+FA LAV +DFLLQITAFVAL+V DF R ED RVDC PC+K S S   ++KG GQRK 
Sbjct: 720  FSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKE 779

Query: 345  GLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQG 404
            GLL R+ KEV+A  L  W VKI VI+ F    +  IAL TRI+ GL+Q++ LP+DSYLQ 
Sbjct: 780  GLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQI 839

Query: 405  YFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSS 463
            YF +++  L +GPP+YFV+K +YNY+    Q N++C+   C+ +S++N  +        +
Sbjct: 840  YFASLTPLLEVGPPVYFVLKGDYNYTDSESQ-NKVCTGGGCNKDSIVNVFNNL------T 892

Query: 464  YIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP-PDDQPPCCPSGQSSCGSAGVCKDC 522
            YIAKPA+SWLDD+  W SP++  CCRKFTNG++C  PD                     C
Sbjct: 893  YIAKPASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPDPS-------------------C 933

Query: 523  TTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQAS 582
              C   S   + RPST QFKE LP+FLN  PSA CAKGGH AY+++VDL+G+ N I+QAS
Sbjct: 934  FRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQAS 993

Query: 583  SFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALIN 642
             F TYHTPLN Q D++N++RAARE S+ V+ SL+ME+FPYSVFY++FEQYL IW  ALIN
Sbjct: 994  YFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALIN 1053

Query: 643  LAIAIGAVFVVCLI-TTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAV 701
            L I++GA+F+V L+    +  S+  +++ + MIVV+L+G+M +  I LNAVSVVNLVMA 
Sbjct: 1054 LGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAK 1113

Query: 702  GIAVEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVF 760
            GI++EFC HI   FS S    +N R KEALG MG+SVFSGITLTKLVGV+VL FS++E+F
Sbjct: 1114 GISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIF 1173

Query: 761  VVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 791
             VYYF+MYLA+VLLG LHGLVFLPV+LS  G
Sbjct: 1174 QVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|129913 TIGR00833, actII, Transport protein Back     alignment and domain information
>gnl|CDD|217407 pfam03176, MMPL, MMPL family Back     alignment and domain information
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 811
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 100.0
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 100.0
KOG19331201 consensus Cholesterol transport protein (Niemann-P 100.0
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 100.0
KOG1934868 consensus Predicted membrane protein (patched supe 100.0
KOG19351143 consensus Membrane protein Patched/PTCH [Signal tr 100.0
COG1033727 Predicted exporters of the RND superfamily [Genera 100.0
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 100.0
TIGR00833910 actII Transport protein. Characterized members of 100.0
TIGR03480862 HpnN hopanoid biosynthesis associated RND transpor 100.0
PRK106141025 multidrug efflux system subunit MdtC; Provisional 100.0
TIGR009151044 2A0602 The (Largely Gram-negative Bacterial) Hydro 100.0
PRK105031040 multidrug efflux system subunit MdtB; Provisional 100.0
PRK095791017 multidrug efflux protein; Reviewed 100.0
PF008731021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 100.0
COG08411009 AcrB Cation/multidrug efflux pump [Defense mechani 100.0
PRK095771032 multidrug efflux protein; Reviewed 100.0
TIGR009141051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 100.0
PRK105551037 aminoglycoside/multidrug efflux system; Provisiona 100.0
PRK151271049 multidrug efflux system protein AcrB; Provisional 100.0
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 99.96
PRK13024755 bifunctional preprotein translocase subunit SecD/S 99.95
COG36961027 Putative silver efflux pump [Inorganic ion transpo 99.95
TIGR00921 719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 99.95
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 99.95
PRK14726855 bifunctional preprotein translocase subunit SecD/S 99.94
COG1033 727 Predicted exporters of the RND superfamily [Genera 99.93
PRK13023758 bifunctional preprotein translocase subunit SecD/S 99.91
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.89
COG2409937 Predicted drug exporters of the RND superfamily [G 99.86
TIGR03480 862 HpnN hopanoid biosynthesis associated RND transpor 99.86
PRK129111403 bifunctional preprotein translocase subunit SecD/S 99.84
TIGR00833 910 actII Transport protein. Characterized members of 99.83
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.83
COG4258788 Predicted exporter [General function prediction on 99.72
PRK09579 1017 multidrug efflux protein; Reviewed 99.71
PRK10614 1025 multidrug efflux system subunit MdtC; Provisional 99.69
PRK09577 1032 multidrug efflux protein; Reviewed 99.68
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.67
PRK10555 1037 aminoglycoside/multidrug efflux system; Provisiona 99.67
TIGR00915 1044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.67
PRK15127 1049 multidrug efflux system protein AcrB; Provisional 99.67
COG0841 1009 AcrB Cation/multidrug efflux pump [Defense mechani 99.67
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.66
PRK10503 1040 multidrug efflux system subunit MdtB; Provisional 99.65
PF00873 1021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.63
TIGR00917 1204 2A060601 Niemann-Pick C type protein family. The m 99.63
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.6
TIGR00914 1051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.59
PRK13024 755 bifunctional preprotein translocase subunit SecD/S 99.57
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.56
PRK08578292 preprotein translocase subunit SecF; Reviewed 99.55
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.52
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.52
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.51
PRK13023 758 bifunctional preprotein translocase subunit SecD/S 99.47
PRK14726 855 bifunctional preprotein translocase subunit SecD/S 99.46
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 99.46
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.43
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.41
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.36
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 99.35
PRK12911 1403 bifunctional preprotein translocase subunit SecD/S 99.33
PF02355189 SecD_SecF: Protein export membrane protein; InterP 99.33
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 99.33
PRK08578292 preprotein translocase subunit SecF; Reviewed 99.33
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 99.32
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 99.21
PF02355189 SecD_SecF: Protein export membrane protein; InterP 99.19
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 99.19
COG2409 937 Predicted drug exporters of the RND superfamily [G 99.18
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 99.16
COG3696 1027 Putative silver efflux pump [Inorganic ion transpo 99.09
KOG1934 868 consensus Predicted membrane protein (patched supe 99.09
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 98.98
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.93
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.82
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 98.81
KOG3664999 consensus Predicted patched transmembrane receptor 98.8
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 98.78
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 98.73
COG4258 788 Predicted exporter [General function prediction on 98.54
KOG1935 1143 consensus Membrane protein Patched/PTCH [Signal tr 98.39
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 97.85
KOG19331201 consensus Cholesterol transport protein (Niemann-P 87.44
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information 
Probab=100.00  E-value=7.2e-117  Score=1079.51  Aligned_cols=760  Identities=59%  Similarity=0.972  Sum_probs=673.9

Q ss_pred             CCCccccccccCC-CCCccccHhhhhcCCCCCCCCc--------cccccccccccccCCCccccccCCCCCCCCcccCCC
Q 003551            1 MISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDDF--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGF   71 (811)
Q Consensus         1 ~~~~~d~C~~~~~-~~C~~~s~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~lgg~   71 (811)
                      .++++|+|+||.+ +.|.++|+++||+++.++++..        .+.++..+|...+   .+|++.+|+|++++.++||+
T Consensus       421 ~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~~~~~~~~~~~~~~~~~~c~~~p---~~c~~~fg~pl~p~~~lgG~  497 (1204)
T TIGR00917       421 LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPENYDDGFGVDYVKYCFECFTSP---ESCLSAFGGPVDPTTALGGF  497 (1204)
T ss_pred             CCChhccccccCCCCCCccCCHHHHhccChhhcCcccccccccccHHHhhhccccCc---chhcccCCCcCCcceeeCCc
Confidence            3689999999984 6899999999999987666421        2445666775432   46999999999999999999


Q ss_pred             CCCccccceEEEEEEEeccCCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeccccHHHHHhhhcccchHHH
Q 003551           72 SGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI  151 (811)
Q Consensus        72 ~~~~~~~A~a~~l~~~l~~~~~~~~~~~~~~~~we~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~~~d~~~~  151 (811)
                      +++++.+|+|+++||.++|+.++ ++..+.+.+||++|.+.++++..+. ...+++++|.+++++++|+++.+..|++.+
T Consensus       498 ~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~  575 (1204)
T TIGR00917       498 SGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWEKAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITI  575 (1204)
T ss_pred             CCCCcccceEEEEEEEEecCCCC-chhhhHHHHHHHHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHH
Confidence            98899999999999999976433 2335789999999999998864321 123589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCcccccccceehhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceeh
Q 003551          152 VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCI  231 (811)
Q Consensus       152 ~~~~~~~~~~~~~~l~~~~~~~~~~v~sk~~l~~~~v~~~~~s~~~s~gl~~~~g~~~~~i~~~~~pfl~lgigvd~~~~  231 (811)
                      +++|++|++|+++.+++++..++++++||+++|++|++++++|+++++|+++++|+++++++++++|||++||||||+|+
T Consensus       576 ~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifi  655 (1204)
T TIGR00917       576 LVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFI  655 (1204)
T ss_pred             HHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999998776666789999999999999999999999999999999999877899999999999999999


Q ss_pred             HHHHHHHhcc--CC---------CHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 003551          232 LVHAVKRQQL--EL---------PLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ  300 (811)
Q Consensus       232 l~~~~~~~~~--~~---------~~~~~~~~~~~~~g~si~~tslt~~~~F~~~~~~~~~~~~~f~~~~a~~v~~~~~~~  300 (811)
                      ++++|++..+  +.         ++++|++++++++|+||++|++|++++|++++++++|++|.||+++++||+++|+++
T Consensus       656 lv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~  735 (1204)
T TIGR00917       656 LVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQ  735 (1204)
T ss_pred             HHHHHHHhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999987432  22         789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCcceeeccccCCCccCCCCCCCCCCcchHHHHHHhhcccccccccchhhhHHHHHHHHHHHH
Q 003551          301 ITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASI  380 (811)
Q Consensus       301 ~t~~pall~l~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~v~~~f~~~~~~si  380 (811)
                      +|+|||+|+++.||++.+|+||+||.+.++.....++...+.+.+.+.+|++++|+|+++++++|++++++|++++++|+
T Consensus       736 it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si  815 (1204)
T TIGR00917       736 ITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGI  815 (1204)
T ss_pred             HHHHHHHHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHH
Confidence            99999999999999999999999999876432111111123455789999999999999999999999999999999999


Q ss_pred             hhhhccCCCCccccccCCCchhhhhHHHHHhhccCCCCEEEEEe-cCCCChhhhhhhhhhcccccCccchHHHHHHhccC
Q 003551          381 ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLI  459 (811)
Q Consensus       381 ~~~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~~~~~~pv~ivv~-~~~~~~~~~~~~~~~~~~~~~~~sl~~~i~~~~~~  459 (811)
                      ||+++++.|+|+++++|+|||+.+|++.++++++.|+|+|+|++ +.||++++. |+++|+..+|+++++.++++     
T Consensus       816 ~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~~~-q~~lc~~~~c~~~sl~~~~~-----  889 (1204)
T TIGR00917       816 ALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSES-QNKVCTGGGCNKDSIVNVFN-----  889 (1204)
T ss_pred             HHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCHHH-HHHHhcccCCcHHHHHHhhc-----
Confidence            99999999999999999999999999999999999999999998 689988754 56899999999999998655     


Q ss_pred             CCCccccCCCcccHHHHHhhhCcCccccccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCCh
Q 003551          460 PQSSYIAKPAASWLDDFLVWISPEAFGCCRK-FTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPST  538 (811)
Q Consensus       460 ~~~~~i~~~~~~wl~d~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  538 (811)
                       +.+++.+++.+|+|||.+|+++. ..||+. ..++.+|++.+                  ++|..|++...-...+|+.
T Consensus       890 -~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~  949 (1204)
T TIGR00917       890 -NLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTNGTFCNGPD------------------PSCFRCADLSSNAQGRPST  949 (1204)
T ss_pred             -ccchhcCCchHHHHHHHHHhCcc-ccceeecCCCCCcCCCcc------------------ccccccccccccccCCCCH
Confidence             44677888999999999999986 467763 34566665332                  3566666422223458888


Q ss_pred             hhHHhhhHHHHccCCCcccccCCCCCcccccccCCCCCCeEEEEEEEeeccCCCChhHHHHHHHHHHHHHHHhhhhcCcc
Q 003551          539 IQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQME  618 (811)
Q Consensus       539 ~~f~~~l~~~l~~~p~~~~~~gg~~~y~~~v~~~~~~~~~i~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (811)
                      ++|+++|++|++..|+..|++||++.|..+++++..+++.|.++||+++|+++++++|++++++++|++++++++..+++
T Consensus       950 ~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~ 1029 (1204)
T TIGR00917       950 TQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKME 1029 (1204)
T ss_pred             HHHHHHHHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCc
Confidence            99999999999998999999999999999888764445679999999999999999999999999999999987666789


Q ss_pred             cccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 003551          619 IFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNL  697 (811)
Q Consensus       619 ~~~~~~~~~~~~~~~~i~~~~~~~~~la~~~v~iv~~l~~-~s~~~~~~~~~~i~~~~~~~~g~m~l~gi~Ln~~s~i~~  697 (811)
                      ++||+..|+|+|||.++++++++++++++++|++++++++ .+++.++++.+++++++++++|+|++||++||++|++++
T Consensus      1030 vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~L 1109 (1204)
T TIGR00917      1030 VFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNL 1109 (1204)
T ss_pred             cccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHH
Confidence            9999999999999999999999999999999999999998 588999999999999999999999999999999999999


Q ss_pred             HHhhhhcccchhhhhHHhhcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHH
Q 003551          698 VMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGF  776 (811)
Q Consensus       698 ~~~iGi~Vd~~ihi~~~f~~~-~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~~~~f~f~~~~~~i~~g~  776 (811)
                      +|++|++|||+.|+.|+|... .+++++|+.+|++++|+||+.|+++|+++|++||+|+++++|++|||+|+++++++|+
T Consensus      1110 i~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~ 1189 (1204)
T TIGR00917      1110 VMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGA 1189 (1204)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876 4589999999999999999999778999999999999999999999999998899999


Q ss_pred             HHHHHHHHHHHHhhC
Q 003551          777 LHGLVFLPVVLSVFG  791 (811)
Q Consensus       777 ~~~L~llPvll~~~~  791 (811)
                      +|||++|||+|+++|
T Consensus      1190 ~HGLvfLPVlLS~~G 1204 (1204)
T TIGR00917      1190 LHGLVFLPVLLSYIG 1204 (1204)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999987

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms] Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query811
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.6 bits (133), Expect = 6e-08
 Identities = 80/453 (17%), Positives = 138/453 (30%), Gaps = 132/453 (29%)

Query: 103 VAWEKAFVQLAK----DELLPMVQSKNLTLAFS------SESSIEEELKRESTADAITIV 152
           + W    + L      + +L M+Q   L           S+ S   +L+  S    +  +
Sbjct: 184 IFW----LNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 153 I-------SYLVMFAYISLTLGD---TPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF- 201
           +         LV        L +       ++F +S K+LL  +    V   +  +    
Sbjct: 238 LKSKPYENCLLV--------LLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTH 288

Query: 202 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 261
            S      TL   EV   L+  +                 +LP E   +N        ++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQ------------DLPREVLTTNPRR-----LS 331

Query: 262 L--ASLSEVLAFAVGSFIPMPAC----RVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 315
           +   S+ + LA           C     +      L VL     +   F  L VF     
Sbjct: 332 IIAESIRDGLATW--DNWKHVNCDKLTTIIESS--LNVLEPAEYR-KMFDRLSVFP---- 382

Query: 316 EDKRVDCIPCLKLSSSYADSDKGIGQ------RKPGLLARYMKEVHATILSLWGVKIAVI 369
                  IP + LS  + D  K           K  L+ +  KE   +I S+        
Sbjct: 383 PS--AH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------- 431

Query: 370 SLFVAFTLASIALCTRIEPGLEQKIV----LPR--------DSYLQGYF-NNISEHLRIG 416
                     + +    E  L + IV    +P+          YL  YF ++I  HL+  
Sbjct: 432 -------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 417 ---------PPLYFVVKNYNY-SSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIA 466
                      ++    ++ +   + R      S +   S S+LN + +  L     YI 
Sbjct: 485 EHPERMTLFRMVFL---DFRFLEQKIRHD----STAWNASGSILNTLQQ--LKFYKPYIC 535

Query: 467 KPAASW------LDDFLVWISPEAFGCCRKFTN 493
                +      + DFL     E    C K+T+
Sbjct: 536 DNDPKYERLVNAILDFL--PKIEENLICSKYTD 566

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 811
d1iwga7199 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux trans 1e-06
d1iwga8222 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux t 3e-04
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 199 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 637 RTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVN 696
              +  L  AI  VF+V  +   +F ++ I  + + ++++    V+A     +N +++  
Sbjct: 39  HEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFG 98

Query: 697 LVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 756
           +V+A+G+ V+  + +         ++    KEA       +   +    +V   V     
Sbjct: 99  MVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMA 158

Query: 757 TEVFVVYYFQMYLALVLLG-----FLHGLVFLPVVLSVF 790
                        ++ ++       L  L+  P + +  
Sbjct: 159 FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 197
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query811
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.95
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.92
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.9
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.84
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-27  Score=159.26  Aligned_cols=158  Identities=13%  Similarity=0.240  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99899999999999999999999842501378999999999999999999985034416889999976652103021444
Q 003551          633 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT  712 (811)
Q Consensus       633 ~~i~~~~~~~~~~a~~~v~iv~~~~~~s~~~~li~~~~i~~~~i~~~G~m~l~gi~Ln~~s~i~l~i~iGi~Vd~~ihi~  712 (811)
                      ++..++...++.++++.++++++++++|++.+++++++++..+.+++|.|+++|+++|..+...+++++|++|||++|+.
T Consensus        35 ~~si~~~~~~l~ia~~lv~~vl~l~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~i~i~  114 (199)
T d1iwga7          35 KISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVV  114 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99999999999999999999999998601546311001100267778876237883477788878889888423378899


Q ss_pred             HHHHC---C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77660---3-79999999999998558989897789999999863047403---79999999999999999999999999
Q 003551          713 HAFSV---S-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPV  785 (811)
Q Consensus       713 ~~f~~---~-~~~~~~~~~~al~~~g~pv~~~~~ltt~~g~~~L~fs~~~~---~~~~~f~~~~~~i~~g~~~~L~~lPv  785 (811)
                      +++.+   + +.+++|++.++.+++|+|++.++ +||++||.+|++++...   ++.+ +......+.++++++++++|+
T Consensus       115 ~~~~~~~~~~g~~~~eAi~~a~~~~g~~i~~s~-lTt~~~f~~l~~~~~~~~~~~~~~-g~~i~~gv~~s~i~al~llPa  192 (199)
T d1iwga7         115 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA  192 (199)
T ss_dssp             HHHHHHHHHTSCCSHHHHHHGGGTHHHHHHHHH-HHHHHHHTTTTCCCTTSHHHHHHH-HHHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999986699889999998767665788999-999998898830788299999999-999999999999999999999


Q ss_pred             HHHHHCC
Q ss_conf             9885289
Q 003551          786 VLSVFGP  792 (811)
Q Consensus       786 lls~~~p  792 (811)
                      +++++.+
T Consensus       193 ll~~~~K  199 (199)
T d1iwga7         193 LCATMLK  199 (199)
T ss_dssp             HHHHSCC
T ss_pred             HHHHHCC
T ss_conf             9998649
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure