Citrus Sinensis ID: 003584
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 809 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.907 | 0.845 | 0.373 | 1e-159 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.918 | 0.698 | 0.383 | 1e-159 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.908 | 0.825 | 0.382 | 1e-157 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.918 | 0.918 | 0.387 | 1e-155 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.936 | 0.765 | 0.376 | 1e-154 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.909 | 0.865 | 0.382 | 1e-153 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.943 | 0.924 | 0.363 | 1e-152 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.901 | 0.836 | 0.386 | 1e-150 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.835 | 0.860 | 0.385 | 1e-149 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.915 | 0.771 | 0.369 | 1e-147 |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust.
Identities = 277/742 (37%), Positives = 446/742 (60%), Gaps = 8/742 (1%)
Query: 71 NTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYR 130
+++ Y ++ +K+F+E +N TW++LI GY+ ++ E LF +MQ EG +
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQ 191
Query: 131 PSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYL 190
P+ +T L + + +G+ RG Q H +K D V L+++Y KC + +A L
Sbjct: 192 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 251
Query: 191 FKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSA 250
F + K+ V W +MI+GY+ NG +A+ F MR+ V ++ +F S++ CA +
Sbjct: 252 FDK-TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKE 310
Query: 251 RDFGAQVHGCILSSGFEANVYVQSALIDMYAKC-GDLDSARRLLEYSEIDNEVSWNSMIV 309
F Q+H ++ GF + +++AL+ Y+KC LD+ R E + N VSW +MI
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMIS 370
Query: 310 GFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG 369
GF + +EA+ LF +M + ++ ++FTY +L + + + VH+ +VKT +E
Sbjct: 371 GFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA----LPVISPSEVHAQVVKTNYER 426
Query: 370 YKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMR 429
V AL+D Y K G ++ A VF+ + DKD+++W++++ G A G E A+K F ++
Sbjct: 427 SSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486
Query: 430 ISGICPDHVVVSSILSACAELTV-LEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCI 488
GI P+ SSIL+ CA + G+Q H +KS SSL V ++L+ +YAK G I
Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNI 546
Query: 489 NDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFAC 548
A VF +D+++W ++I G AQ+G+ +AL + +M R K D +TF+G+ AC
Sbjct: 547 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAAC 606
Query: 549 SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATV 608
+HAGL E YF+ M + I P +H +CM+DL R+G+L +A +++ M +T+
Sbjct: 607 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTI 666
Query: 609 WKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668
W+ +L+ACRVH ELG AA + ++P ++ YV LSNMY+ +G W++ A+VRKLM
Sbjct: 667 WRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNE 726
Query: 669 RGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHN 728
R ++KEPG SW+E ++ + F++ DR HPL+ IY K++++ +K+ GY PD ++ L +
Sbjct: 727 RNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQD 786
Query: 729 VEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHII 788
+++E KE LA HSE+LA+AFGL+ P+G+P+ I KNLRVCGDCH +K I+ + R I+
Sbjct: 787 IDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIV 846
Query: 789 LRDSNRFHHFKA-GNCSCGDYW 809
+RDSNRFHHF + G CSCGD+W
Sbjct: 847 VRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/744 (38%), Positives = 440/744 (59%), Gaps = 1/744 (0%)
Query: 66 DGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQ 125
D + N +++ Y + G L A+ +F+ ++ T+++LI G S G +A ELF +M
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 126 LEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIF 185
L+G P TL +++ CS G L RG+Q H Y K F N + L+++YAKC I
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI- 440
Query: 186 EAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTAC 245
E + + + +N V W M+ Y + FR M++E + NQ+T+PSIL C
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500
Query: 246 AAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWN 305
+ + G Q+H I+ + F+ N YV S LIDMYAK G LD+A +L + VSW
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560
Query: 306 SMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKT 365
+MI G+ + F +AL+ F++M R I+ D+ + ++ A L + +H+ +
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620
Query: 366 GFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYF 425
GF NAL+ +Y++ G ++ +++ F + D I+W +L++G G+ EEAL+ F
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 426 SDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKC 485
M GI ++ S + A +E ++ G+QVHAV K+G S V N+L+ +YAKC
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 486 GCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545
G I+DA + F + T++ ++W A+I +++G G EAL +DQM+ +P+++T VG+L
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800
Query: 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPD 605
ACSH GL + YFESM+ YG+ P P+HY C++D+L R+G L AK + +M +PD
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 860
Query: 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665
A VW+ LLSAC VH ++E+GE AA++L ELEP ++ YV LSN+Y+ + KW+ R+
Sbjct: 861 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQK 920
Query: 666 MKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFA 725
MK +G++KEPG SW+E + +H F D+ HPL +I+ ++ E GYV D
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSL 980
Query: 726 LHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLR 785
L+ ++ E K+ + HSEKLA++FGLL+LP PI + KNLRVC DCH +K++S V R
Sbjct: 981 LNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNR 1040
Query: 786 HIILRDSNRFHHFKAGNCSCGDYW 809
II+RD+ RFHHF+ G CSC DYW
Sbjct: 1041 EIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 556 bits (1434), Expect = e-157, Method: Compositional matrix adjust.
Identities = 290/758 (38%), Positives = 447/758 (58%), Gaps = 23/758 (3%)
Query: 71 NTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYR 130
NT++ Y G K+F+ +N +W+SLI ++ A E F M E
Sbjct: 137 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196
Query: 131 PSQYTLDNVLRLCS---LKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEA 187
PS +TL +V+ CS + L G+Q H Y ++ +LN+F++ LV MY K + +
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASS 255
Query: 188 EYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAA 247
+ L F G++ V W T+++ QN +A+E R+M +EGVE ++FT S+L AC+
Sbjct: 256 KVLLGSF-GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSH 314
Query: 248 VSARDFGAQVHGCILSSG-FEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVS-WN 305
+ G ++H L +G + N +V SAL+DMY C + S RR+ + D ++ WN
Sbjct: 315 LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD-GMFDRKIGLWN 373
Query: 306 SMIVGFARQGFHKEALSLFKKMH-ARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364
+MI G+++ KEAL LF M + + + T V+ + + +++H +VK
Sbjct: 374 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK 433
Query: 365 TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKY 424
G + +FV N L+DMY++ G +D A +F M+D+D+++W ++ITG + +E+AL
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 493
Query: 425 FSDM------------RISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSL 472
M R+S + P+ + + +IL +CA L+ L G+++HA +K+ + +
Sbjct: 494 LHKMQNLERKVSKGASRVS-LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 552
Query: 473 SVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLAR 532
+V ++LV +YAKCGC+ + +VFD + ++VITW +IM +G G+EA+ M+ +
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQ 612
Query: 533 GTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592
G KP+ +TF+ + ACSH+G+ + F M YG++P DHYAC++DLLGR+G++ E
Sbjct: 613 GVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKE 672
Query: 593 AKALLDQMVGE-PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651
A L++ M + A W +LL A R+H +LE+GE AA NL +LEP A YV L+N+YS
Sbjct: 673 AYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYS 732
Query: 652 TAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIML 711
+AG W+ A VR+ MK +G+RKEPGCSW+E +VH F++ D HP + ++ +
Sbjct: 733 SAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWE 792
Query: 712 LIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGD 771
+++ GYVPD + LHNVEE+ KEI L HSEKLA+AFG+L G IR+ KNLRVC D
Sbjct: 793 RMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCND 852
Query: 772 CHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
CH A K+IS + R IILRD RFH FK G CSCGDYW
Sbjct: 853 CHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust.
Identities = 289/745 (38%), Positives = 436/745 (58%), Gaps = 2/745 (0%)
Query: 65 RDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQM 124
++ F +++ + G + EA ++F K + +++ G++ +A + F +M
Sbjct: 67 QEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRM 126
Query: 125 QLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCI 184
+ + P Y +L++C + L+ G++ HG +K+ F L+ F +TGL +MYAKC+ +
Sbjct: 127 RYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQV 186
Query: 185 FEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTA 244
EA +F P+ ++ V+W T++ GYSQNG A+E + M E ++ + T S+L A
Sbjct: 187 NEARKVFDRMPE-RDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245
Query: 245 CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSW 304
+A+ G ++HG + SGF++ V + +AL+DMYAKCG L++AR+L + N VSW
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305
Query: 305 NSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364
NSMI + + KEA+ +F+KM +K D + L+ A DL + +H L V+
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365
Query: 365 TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKY 424
G + V N+LI MY K +D A +F +Q + ++SW ++I G A +G +AL Y
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425
Query: 425 FSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAK 484
FS MR + PD S+++A AEL++ + +H V ++S ++ V +LV +YAK
Sbjct: 426 FSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAK 485
Query: 485 CGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL 544
CG I A +FD M R V TW A+I G +G GK AL+ +++M KP+ +TF+ +
Sbjct: 486 CGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSV 545
Query: 545 LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604
+ ACSH+GL E F M + Y I+ DHY M+DLLGR+G+L EA + QM +P
Sbjct: 546 ISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKP 605
Query: 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRK 664
V+ A+L AC++H ++ E+AA LFEL P + +V L+N+Y A WE +VR
Sbjct: 606 AVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRV 665
Query: 665 LMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNF 724
M +G+RK PGCS VE ++VH F S HP IY+ +++++ IKEAGYVPD N
Sbjct: 666 SMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNL 725
Query: 725 ALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYL 784
L VE + KE L+ HSEKLA++FGLL G I + KNLRVC DCH A KYIS V
Sbjct: 726 VL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTG 784
Query: 785 RHIILRDSNRFHHFKAGNCSCGDYW 809
R I++RD RFHHFK G CSCGDYW
Sbjct: 785 REIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/799 (37%), Positives = 448/799 (56%), Gaps = 41/799 (5%)
Query: 50 GEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLF----------NETPFK--- 96
G++ E LFE+M RD WN M+ AY G EA L NE +
Sbjct: 194 GKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLA 253
Query: 97 -------------------NFFTWSSLIY---GYSNY---GLDIEAFELFWQMQLEGYRP 131
+ + S +I+ G S Y G + F M
Sbjct: 254 RISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVEC 313
Query: 132 SQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLF 191
Q T +L L G+Q H A+K DL V L++MY K + A +F
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 192 KMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAV-SA 250
+ ++ ++W ++I G +QNG +A+ F + G++ +Q+T S+L A +++
Sbjct: 374 DNMSE-RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEG 432
Query: 251 RDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVG 310
QVH + ++ +V +ALID Y++ + A L E D V+WN+M+ G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFD-LVAWNAMMAG 491
Query: 311 FARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370
+ + + L LF MH + + DDFT +V +N K VH+ +K+G++
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLD 551
Query: 371 KFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRI 430
+V++ ++DMY K G++ A F+ + D ++WT++I+GC +G E A FS MR+
Sbjct: 552 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRL 611
Query: 431 SGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIND 490
G+ PD ++++ A + LT LE G+Q+HA LK + V SLV +YAKCG I+D
Sbjct: 612 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDD 671
Query: 491 ANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH 550
A +F + ++ W A+++G AQ+G+GKE LQ + QM + G KPD +TF+G+L ACSH
Sbjct: 672 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSH 731
Query: 551 AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWK 610
+GL A + SM YGIKP +HY+C+ D LGR+G + +A+ L++ M E A++++
Sbjct: 732 SGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYR 791
Query: 611 ALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670
LL+ACRV GD E G+R A L ELEP+++ YV LSNMY+ A KW++ R +MK
Sbjct: 792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851
Query: 671 IRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVE 730
++K+PG SW+E +++HIF+ +DR + IY K+ +++ IK+ GYVP+ +F L +VE
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVE 911
Query: 731 EEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILR 790
EE KE L YHSEKLAVAFGLL+ P PIR+ KNLRVCGDCH AMKYI+ VY R I+LR
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLR 971
Query: 791 DSNRFHHFKAGNCSCGDYW 809
D+NRFH FK G CSCGDYW
Sbjct: 972 DANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/787 (38%), Positives = 439/787 (55%), Gaps = 51/787 (6%)
Query: 73 MIAAYANSGRLREAKKLFNETPFKN--FFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYR 130
+I+ Y + G L A L P + + W+SLI Y + G + LF M +
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 131 PSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYL 190
P YT V + C ++ GE H ++ T F N FV LV MY++C+ + +A +
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184
Query: 191 FKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVE-GVESNQFTFPSILTACAAVS 249
F + V+W ++I Y++ G A+E F M E G + T ++L CA++
Sbjct: 185 FDEM-SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243
Query: 250 ARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIV 309
G Q+H ++S N++V + L+DMYAKCG +D A + + + VSWN+M+
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303
Query: 310 GFARQGFHKEALSLFKKMHARDIKIDDFTYP----------------------------- 340
G+++ G ++A+ LF+KM IK+D T+
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363
Query: 341 ------SVLNCFASNIDLNNAKSVHSLIVK-------TGFEGYKFVNNALIDMYAKQGNL 387
SVL+ AS L + K +H +K G V N LIDMYAK +
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV 423
Query: 388 DCAFMVFNLM--QDKDVISWTSLITGCAYHGSYEEALKYFSDM--RISGICPDHVVVSSI 443
D A +F+ + +++DV++WT +I G + HG +AL+ S+M P+ +S
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483
Query: 444 LSACAELTVLEFGQQVHAVFLKSG-GCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD 502
L ACA L L G+Q+HA L++ L V N L+ +YAKCG I+DA VFD+M ++
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543
Query: 503 VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFE 562
+TWT+L+ G +G G+EAL +D+M G K D +T + +L+ACSH+G+ + YF
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603
Query: 563 SMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDL 622
M V+G+ PGP+HYAC++DLLGR+G+L A L+++M EP VW A LS CR+HG +
Sbjct: 604 RMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKV 663
Query: 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVET 682
ELGE AA + EL + Y LSN+Y+ AG+W+D R+R LM+ +G++K PGCSWVE
Sbjct: 664 ELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723
Query: 683 NSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHS 742
F D+ HP +IY + + M IK+ GYVP+ FALH+V++E K+ L HS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783
Query: 743 EKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGN 802
EKLA+A+G+LT PQGA IRI KNLRVCGDCHTA Y+S + IILRDS+RFHHFK G+
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGS 843
Query: 803 CSCGDYW 809
CSC YW
Sbjct: 844 CSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1393), Expect = e-152, Method: Compositional matrix adjust.
Identities = 280/771 (36%), Positives = 441/771 (57%), Gaps = 8/771 (1%)
Query: 45 DFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSL 104
D G++ A +++++M ++ + NTMI+ + +G + A+ LF+ P + TW+ L
Sbjct: 57 DLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTIL 116
Query: 105 IYGYSNYGLDIEAFELFWQM--QLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKT 162
+ Y+ EAF+LF QM P T +L C+ Q H +A+K
Sbjct: 117 MGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKL 176
Query: 163 CFDLNAFVVTG--LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAI 220
FD N F+ L+ Y + + + A LF+ P+ K+ V + T+ITGY ++G ++I
Sbjct: 177 GFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE-KDSVTFNTLITGYEKDGLYTESI 235
Query: 221 ECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMY 280
F MR G + + FTF +L A + G Q+H +++GF + V + ++D Y
Sbjct: 236 HLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFY 295
Query: 281 AKCGDLDSARRLL-EYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTY 339
+K + R L E E+D VS+N +I +++ ++ +L F++M +F +
Sbjct: 296 SKHDRVLETRMLFDEMPELDF-VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPF 354
Query: 340 PSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD 399
++L+ A+ L + +H + + V N+L+DMYAK + A ++F +
Sbjct: 355 ATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQ 414
Query: 400 KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQV 459
+ +SWT+LI+G G + LK F+ MR S + D +++L A A L G+Q+
Sbjct: 415 RTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQL 474
Query: 460 HAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKG 519
HA ++SG ++ + LV +YAKCG I DA +VF+ M R+ ++W ALI A NG G
Sbjct: 475 HAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDG 534
Query: 520 KEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYAC 579
+ A+ + +M+ G +PD ++ +G+L ACSH G E YF++M +YGI P HYAC
Sbjct: 535 EAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYAC 594
Query: 580 MIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPM- 638
M+DLLGR+G+ EA+ L+D+M EPD +W ++L+ACR+H + L ERAA LF +E +
Sbjct: 595 MLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLR 654
Query: 639 NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPL 698
+A YV +SN+Y+ AG+WE V+K M+ RGI+K P SWVE N ++H+F S D+ HP
Sbjct: 655 DAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPN 714
Query: 699 RTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGA 758
+I KI+E+ I+ GY PD + + +V+E+ K L YHSE+LAVAF L++ P+G
Sbjct: 715 GDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGC 774
Query: 759 PIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
PI + KNLR C DCH A+K IS + R I +RD++RFHHF G CSCGDYW
Sbjct: 775 PIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/737 (38%), Positives = 424/737 (57%), Gaps = 8/737 (1%)
Query: 77 YANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTL 136
Y N G L+EA ++F+E + W+ L+ + G + LF +M G YT
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Query: 137 DNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD 196
V + S + GEQ HG+ +K+ F V LV Y K + + A +F +
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE 258
Query: 197 GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQ 256
++ ++W ++I GY NG K + F M V G+E + T S+ CA G
Sbjct: 259 -RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317
Query: 257 VHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGF 316
VH + + F + L+DMY+KCGDLDSA+ + + VS+ SMI G+AR+G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 317 HKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNA 376
EA+ LF++M I D +T +VLNC A L+ K VH I + FV+NA
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 437
Query: 377 LIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFS----DMRISG 432
L+DMYAK G++ A +VF+ M+ KD+ISW ++I G + + EAL F+ + R S
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS- 496
Query: 433 ICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDAN 492
PD V+ +L ACA L+ + G+++H +++G S V NSLV +YAKCG + A+
Sbjct: 497 --PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAH 554
Query: 493 RVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAG 552
+FD + ++D+++WT +I G +G GKEA+ ++QM G + D I+FV LL+ACSH+G
Sbjct: 555 MLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSG 614
Query: 553 LAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKAL 612
L + +F M I+P +HYAC++D+L R+G LI+A ++ M PDAT+W AL
Sbjct: 615 LVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGAL 674
Query: 613 LSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIR 672
L CR+H D++L E+ A +FELEP N YV ++N+Y+ A KWE R+RK + RG+R
Sbjct: 675 LCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLR 734
Query: 673 KEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEE 732
K PGCSW+E +V+IF++ D +P +I + + ++ + E GY P +AL + EE
Sbjct: 735 KNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEM 794
Query: 733 GKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDS 792
KE L HSEKLA+A G+++ G IR+ KNLRVCGDCH K++S + R I+LRDS
Sbjct: 795 EKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDS 854
Query: 793 NRFHHFKAGNCSCGDYW 809
NRFH FK G+CSC +W
Sbjct: 855 NRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 303/786 (38%), Positives = 426/786 (54%), Gaps = 110/786 (13%)
Query: 131 PSQYTLDNVLRLCSLKGLLQR----------GEQFHGYAIKTCFDLNAFVVTGLVDMYAK 180
P +L +L LC+ LLQ+ + H IK+ + +++ L+++Y+K
Sbjct: 4 PVPLSLSTLLELCT--NLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSK 61
Query: 181 CKCIFEAEYLFKMFP------------------------------DGKNHVAWTTMITGY 210
A LF P ++ V+WTTMI GY
Sbjct: 62 TGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGY 121
Query: 211 SQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANV 270
G KAI DM EG+E QFT ++L + AA + G +VH I+ G NV
Sbjct: 122 KNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNV 181
Query: 271 YVQSALIDMYAKCGD-------------------------------LDSARRLLEYSEID 299
V ++L++MYAKCGD +D A E
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241
Query: 300 NEVSWNSMIVGFARQGFHKEALSLFKKMHARD--IKIDDFTYPSVLNCFASNIDLNNAKS 357
+ V+WNSMI GF ++G+ AL +F KM RD + D FT SVL+ A+ L K
Sbjct: 242 DIVTWNSMISGFNQRGYDLRALDIFSKM-LRDSLLSPDRFTLASVLSACANLEKLCIGKQ 300
Query: 358 VHSLIVKTGFEGYKFVNNALIDMYA---------------------------------KQ 384
+HS IV TGF+ V NALI MY+ K
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360
Query: 385 GNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSIL 444
G+++ A +F ++D+DV++WT++I G HGSY EA+ F M G P+ ++++L
Sbjct: 361 GDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAML 420
Query: 445 SACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH-TRDV 503
S + L L G+Q+H +KSG S+SV N+L+ +YAK G I A+R FD + RD
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480
Query: 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFES 563
++WT++I+ AQ+G +EAL+ ++ ML G +PD+IT+VG+ AC+HAGL R YF+
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540
Query: 564 MDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLE 623
M V I P HYACM+DL GR+G L EA+ +++M EPD W +LLSACRVH +++
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNID 600
Query: 624 LGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETN 683
LG+ AA L LEP N+ Y L+N+YS GKWE+AA++RK MK ++KE G SW+E
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660
Query: 684 SQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSE 743
+VH+F ED HP + +IY + +I IK+ GYVPD LH++EEE KE L +HSE
Sbjct: 661 HKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720
Query: 744 KLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNC 803
KLA+AFGL++ P +RI KNLRVC DCHTA+K+IS + R II+RD+ RFHHFK G C
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFC 780
Query: 804 SCGDYW 809
SC DYW
Sbjct: 781 SCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/746 (36%), Positives = 435/746 (58%), Gaps = 5/746 (0%)
Query: 67 GFTWNTMIAAYANSGRLREAKKLFNETPFK-NFFTWSSLIYGYSNYGLDIEAFELFWQMQ 125
GF N +++ YA + L A++LF+ K + W+S++ YS G +E ELF +M
Sbjct: 217 GFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMH 276
Query: 126 LEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKT-CFDLNAFVVTGLVDMYAKCKCI 184
+ G P+ YT+ + L C + G++ H +K+ +V L+ MY +C +
Sbjct: 277 MTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKM 336
Query: 185 FEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTA 244
+AE + + + + V W ++I GY QN +A+E F DM G +S++ + SI+ A
Sbjct: 337 PQAERILRQM-NNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395
Query: 245 CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSW 304
+S G ++H ++ G+++N+ V + LIDMY+KC R + +SW
Sbjct: 396 SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISW 455
Query: 305 NSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364
++I G+A+ H EAL LF+ + + ++ID+ S+L + + K +H I++
Sbjct: 456 TTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILR 515
Query: 365 TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKY 424
G + N L+D+Y K N+ A VF ++ KDV+SWTS+I+ A +G+ EA++
Sbjct: 516 KGLLD-TVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVEL 574
Query: 425 FSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAK 484
F M +G+ D V + ILSA A L+ L G+++H L+ G C S+ ++V +YA
Sbjct: 575 FRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYAC 634
Query: 485 CGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL 544
CG + A VFD + + ++ +T++I +G GK A++ +D+M PD+I+F+ L
Sbjct: 635 CGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLAL 694
Query: 545 LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604
L+ACSHAGL + R + + M+ Y ++P P+HY C++D+LGR+ ++EA + M EP
Sbjct: 695 LYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEP 754
Query: 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRK 664
A VW ALL+ACR H + E+GE AA L ELEP N V +SN+++ G+W D +VR
Sbjct: 755 TAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRA 814
Query: 665 LMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIML-LIKEAGYVPDMN 723
MK+ G+ K PGCSW+E + +VH F + D+ HP +IY K+ E+ L +E GYV D
Sbjct: 815 KMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTK 874
Query: 724 FALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVY 783
F LHNV+E K L HSE++A+A+GLL P A +RI KNLRVC DCHT K +S ++
Sbjct: 875 FVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLF 934
Query: 784 LRHIILRDSNRFHHFKAGNCSCGDYW 809
R I++RD+NRFHHF++G CSCGD W
Sbjct: 935 RRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 809 | ||||||
| 359489486 | 786 | PREDICTED: pentatricopeptide repeat-cont | 0.965 | 0.993 | 0.669 | 0.0 | |
| 357507065 | 837 | Pentatricopeptide repeat-containing prot | 0.996 | 0.962 | 0.637 | 0.0 | |
| 356502497 | 852 | PREDICTED: pentatricopeptide repeat-cont | 0.920 | 0.874 | 0.638 | 0.0 | |
| 296089060 | 719 | unnamed protein product [Vitis vinifera] | 0.882 | 0.993 | 0.605 | 0.0 | |
| 449453904 | 840 | PREDICTED: pentatricopeptide repeat-cont | 0.955 | 0.920 | 0.602 | 0.0 | |
| 449508249 | 840 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.955 | 0.920 | 0.598 | 0.0 | |
| 15233050 | 783 | pentatricopeptide (PPR) repeat-containin | 0.885 | 0.914 | 0.606 | 0.0 | |
| 297820962 | 767 | pentatricopeptide repeat-containing prot | 0.877 | 0.925 | 0.574 | 0.0 | |
| 224067848 | 514 | predicted protein [Populus trichocarpa] | 0.620 | 0.976 | 0.752 | 0.0 | |
| 255541480 | 607 | pentatricopeptide repeat-containing prot | 0.652 | 0.869 | 0.7 | 0.0 |
| >gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/814 (66%), Positives = 650/814 (79%), Gaps = 33/814 (4%)
Query: 1 MFKLDFKILNFSLRC-----RSKIIGPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEA 55
M++L+ I FS + +++ R N +V +SD N L + S G +D+A
Sbjct: 1 MYRLNLGIYTFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDA 60
Query: 56 GQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDI 115
+LF+ M DRD +WNTMI AYANSGRL EA+KLF ETP ++ TWSSLI GY YG D+
Sbjct: 61 RKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDV 120
Query: 116 EAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLV 175
EA ELFW+MQ EG RP+Q+T +VLR+CS+ LL++G+Q H +AIKT FD NAFVVTGLV
Sbjct: 121 EALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLV 180
Query: 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ 235
DMYAKCKCI EAEYLF++ PD +NHV WT M+TGYSQNG G KAIECFRDMR EG+E NQ
Sbjct: 181 DMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQ 240
Query: 236 FTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEY 295
FTFPSILTAC ++SA FGAQVHGCI+ SGF ANV+V SAL+DMY+KCGDL +ARR+LE
Sbjct: 241 FTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLET 300
Query: 296 SEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNA 355
E+D+ VSWNSMIVG RQG +EALSLF+ MH R +KID+FTYPSVLNCF+ +D+ NA
Sbjct: 301 MEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNA 360
Query: 356 KSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYH 415
SVHSLIVKTGFE YK VNNAL+DMYAK+G D AF VF M DKDVISWTSL+TGC ++
Sbjct: 361 MSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHN 420
Query: 416 GSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVD 475
GSYEEAL+ F +MRI GI PD +V++++LSACAELTVLEFG+QVHA FLKSG SSLSVD
Sbjct: 421 GSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVD 480
Query: 476 NSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTK 535
NSLV +YAKCGCI DAN+VFDSM +DVITWTALI+G AQNG+G++
Sbjct: 481 NSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD-------------- 526
Query: 536 PDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKA 595
HAGL E+ R YF+SM++VYGIKPGP+HYACMIDLLGRSGKL+EAK
Sbjct: 527 --------------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKE 572
Query: 596 LLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655
LL+QM +PDATVWKALL+ACRVHG++ELGERAANNLFELEP NA+PYV LSN+YS AGK
Sbjct: 573 LLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGK 632
Query: 656 WEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKE 715
WE+AA+ R+LMK RG+ KEPGCSW+E +S+VH F+SEDR HP +IYSK+DEIM+LIKE
Sbjct: 633 WEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKE 692
Query: 716 AGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTA 775
AGYVPDMNFALH+++EEGKE+GLAYHSEKLAVAFGLLT+P GAPIRIFKNLR+CGDCHTA
Sbjct: 693 AGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTA 752
Query: 776 MKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
MKY+S V+ RH+ILRDSN FHHF+ G CSC DYW
Sbjct: 753 MKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/811 (63%), Positives = 640/811 (78%), Gaps = 5/811 (0%)
Query: 1 MFKLDFKILNFSLRCRSKIIGPARYTHNV-GNSVKPASDLNRALVDFSNSGEIDEAGQLF 59
M K K+L+F K + R H S + N+ L S SG++++A +LF
Sbjct: 30 MHKFSSKVLSFPHN-PCKFMAFLRSIHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLF 88
Query: 60 EKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFE 119
+KM +D ++WNTMI++Y N GRL EA++LF+ K+ TWSS+I GY +G +EAF+
Sbjct: 89 DKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFD 148
Query: 120 LFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYA 179
LF M+LEG++ SQ+TL +VLR+CS GL+Q GE HG+ +K F+ N FVVTGLVDMYA
Sbjct: 149 LFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYA 208
Query: 180 KCKCIFEAEYLFKMFP-DGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTF 238
KCKC+ EAE+LFK D KNHV WT M+TGY+QNG G+KA+E FR M +GVE NQ+TF
Sbjct: 209 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTF 268
Query: 239 PSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI 298
P+ILTAC++V AR FG QVHG I+ SGF +NVYVQSAL+DMYAKCGDL +A+ +LE E
Sbjct: 269 PTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMED 328
Query: 299 DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSV 358
D+ VSWNS++VGF R G +EAL LFK MH R++KIDD+T+PSVLNC + N KSV
Sbjct: 329 DDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV--VGSINPKSV 386
Query: 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSY 418
H LI+KTGFE YK V+NAL+DMYAK G++DCA+ VF M +KDVISWTSL+TG A + S+
Sbjct: 387 HGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSH 446
Query: 419 EEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSL 478
EE+LK F DMR++G+ PD +V+SILSACAELT+LEFG+QVH F+KSG S SV NSL
Sbjct: 447 EESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSL 506
Query: 479 VLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538
V +YAKCGC++DA+ +F SM +DVITWTA+I+G AQNGKG+ +L+FYD M++ GT+PD+
Sbjct: 507 VAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDF 566
Query: 539 ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLD 598
ITF+GLLFACSHAGL + R YF+ M+KVYGIKPGP+HYACMIDL GRSGKL EAK LLD
Sbjct: 567 ITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLD 626
Query: 599 QMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWED 658
QM +PDATVWK+LLSACRVH +LEL ERAA NLFELEPMNAMPYV LSNMYS + KW D
Sbjct: 627 QMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWND 686
Query: 659 AARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGY 718
A++RKLMKS+GI KEPGCSW+E NS+V+ FIS+DRGHP +IY+KIDEI+L IKEAGY
Sbjct: 687 VAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGY 746
Query: 719 VPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKY 778
VPDM+F+LH++++EGKE+GLAYHSEKLAVAFGLL P APIRIFKNLRVCGDCH+AMKY
Sbjct: 747 VPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKY 806
Query: 779 ISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
IS V+ RHIILRDSN FHHF+ G CSCGDYW
Sbjct: 807 ISRVFTRHIILRDSNCFHHFREGECSCGDYW 837
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/785 (63%), Positives = 601/785 (76%), Gaps = 40/785 (5%)
Query: 27 HNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREA 86
HN+ +S + N+ L S SG+ID+A +LF+KM RD +TWNTM++ YAN GRL EA
Sbjct: 106 HNIADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEA 165
Query: 87 KKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLK 146
++LFN ++ TWSSLI GY +G EAF+LF +M+LEG +PSQYTL ++LR CS
Sbjct: 166 RELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSAL 225
Query: 147 GLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGK-NHVAWTT 205
GL+Q+GE HGY +K F+ N +VV GLVDMYAKC+ I EAE LFK K NHV WT
Sbjct: 226 GLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTA 285
Query: 206 MITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSG 265
M+TGY+QNG KAIE FR M EGVESNQFTFPSILTAC++VSA FG QVHGCI+ +G
Sbjct: 286 MVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNG 345
Query: 266 FEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFK 325
F N YVQSAL+DMYAKCGDL SA+R+LE E D+ VSWNSMIVG R GF +EA+ LFK
Sbjct: 346 FGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFK 405
Query: 326 KMHARDIKIDDFTYPSVLNC-FASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQ 384
KMHAR++KID +T+PSVLNC ID KSVH L++KTGFE YK V+NAL+DMYAK
Sbjct: 406 KMHARNMKIDHYTFPSVLNCCIVGRID---GKSVHCLVIKTGFENYKLVSNALVDMYAKT 462
Query: 385 GNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSIL 444
+L+CA+ VF M +KDVISWTSL+TG +GS+EE+LK F DMRISG+ PD +V+SIL
Sbjct: 463 EDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASIL 522
Query: 445 SACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVI 504
SACAELT+LEFG+QVH+ F+K G SSLSV+NSLV +YAKCGC++DA+ +F SMH RDVI
Sbjct: 523 SACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVI 582
Query: 505 TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESM 564
TWTALI+G A+NGKG+++L+ YF+ M
Sbjct: 583 TWTALIVGYARNGKGRDSLK-----------------------------------YFQQM 607
Query: 565 DKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLEL 624
K+YGI+PGP+HYACMIDL GR GKL EAK +L+QM +PDATVWKALL+ACRVHG+LEL
Sbjct: 608 KKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLEL 667
Query: 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNS 684
GERAA NLFELEPMNAMPYV LSNMY A KW+DAA++R+LMKS+GI KEPGCSW+E NS
Sbjct: 668 GERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNS 727
Query: 685 QVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEK 744
++H FISEDRGHP +IYSKIDEI+ IKE GYVPDMNF+LH+++ EGKE GLAYHSEK
Sbjct: 728 RLHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYHSEK 787
Query: 745 LAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCS 804
LAVAFGLL P GAPIRIFKNLRVCGDCH+AMKYIS V+ RHIILRDSN FHHFK G CS
Sbjct: 788 LAVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGECS 847
Query: 805 CGDYW 809
C DYW
Sbjct: 848 CEDYW 852
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/814 (60%), Positives = 595/814 (73%), Gaps = 100/814 (12%)
Query: 1 MFKLDFKILNFSLRC-----RSKIIGPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEA 55
M++L+ I FS + +++ R N +V +SD N L + S G +D+A
Sbjct: 1 MYRLNLGIYTFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDA 60
Query: 56 GQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDI 115
+LF+ M DRD +WNTMI AYANSGRL EA+KLF ETP ++ TWSSLI GY YG D+
Sbjct: 61 RKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDV 120
Query: 116 EAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLV 175
EA ELFW+MQ EG RP+Q+T +VLR+CS+ LL++G+Q H +AIKT FD NAFVVTGLV
Sbjct: 121 EALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLV 180
Query: 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ 235
DMYAKCKCI EAEYLF++ PD +NHV WT M+TGYSQNG G KAIECFRDMR EG+E NQ
Sbjct: 181 DMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQ 240
Query: 236 FTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEY 295
FTFPSILTAC ++SA FGAQVHGCI+ SGF ANV+V SAL+DMY+KCGDL +ARR+LE
Sbjct: 241 FTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLET 300
Query: 296 SEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNA 355
E+D+ VSWNSMIVG RQG +EALSLF+ MH R +KID+FTYPS+
Sbjct: 301 MEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSL------------- 347
Query: 356 KSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYH 415
VNNAL+DMYAK+G D AF VF M DKDVISWTSL+TGC ++
Sbjct: 348 -----------------VNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHN 390
Query: 416 GSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVD 475
GSYEEAL+ F +MRI GI PD +V++++LSA +D
Sbjct: 391 GSYEEALRLFCEMRIMGIHPDQIVIAAVLSA---------------------------LD 423
Query: 476 NSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTK 535
NSLV +YAKCGCI DAN+VFDSM +DVITWTALI+G AQNG+G++
Sbjct: 424 NSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD-------------- 469
Query: 536 PDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKA 595
YF+SM++VYGIKPGP+HYACMIDLLGRSGKL+EAK
Sbjct: 470 ------------------------YFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKE 505
Query: 596 LLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655
LL+QM +PDATVWKALL+ACRVHG++ELGERAANNLFELEP NA+PYV LSN+YS AGK
Sbjct: 506 LLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGK 565
Query: 656 WEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKE 715
WE+AA+ R+LMK RG+ KEPGCSW+E +S+VH F+SEDR HP +IYSK+DEIM+LIKE
Sbjct: 566 WEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKE 625
Query: 716 AGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTA 775
AGYVPDMNFALH+++EEGKE+GLAYHSEKLAVAFGLLT+P GAPIRIFKNLR+CGDCHTA
Sbjct: 626 AGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTA 685
Query: 776 MKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
MKY+S V+ RH+ILRDSN FHHF+ G CSC DYW
Sbjct: 686 MKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/811 (60%), Positives = 593/811 (73%), Gaps = 38/811 (4%)
Query: 1 MFKLDFKILNFSLRCRSKIIGP--ARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQL 58
MF + F+ NF +C P R H + + D N+ L + S +G +DEA +L
Sbjct: 1 MFNIYFQTSNFFTKCNFHFKHPLFIRCIHGIAH-YSSNLDSNQLLSELSKNGRVDEARKL 59
Query: 59 FEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAF 118
F++M RD +TWN MI+AYAN G L EA+KLFNETP KN TWSSL+ GY G ++E
Sbjct: 60 FDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGL 119
Query: 119 ELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMY 178
F QM +G +PSQYTL +VLR CS LL G+ H YAIK + N FV TGLVDMY
Sbjct: 120 RQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMY 179
Query: 179 AKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTF 238
+KCKC+ EAEYLF PD KN+V WT M+TGY+QNG KAI+CF++MR +G+ESN FTF
Sbjct: 180 SKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTF 239
Query: 239 PSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI 298
PSILTAC ++SA FG QVHGCI+ SGF NVYVQSAL+DMYAKCGDL SAR +L+ EI
Sbjct: 240 PSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEI 299
Query: 299 DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSV 358
D+ V WNSMIVG G+ +EAL LF KMH RDI+IDDFTYPSVL AS +L +SV
Sbjct: 300 DDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESV 359
Query: 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSY 418
HSL +KTGF+ K V+NAL+DMYAKQGNL CA VFN + DKDVISWTSL+TG ++G +
Sbjct: 360 HSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFH 419
Query: 419 EEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSL 478
E+AL+ F DMR + + D VV+ + SACAELTV+EFG+QVHA F+KS S LS +NSL
Sbjct: 420 EKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSL 479
Query: 479 VLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538
+ +YAKCGC+ DA RVFDSM TR+VI+WTA+I+G AQN
Sbjct: 480 ITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQN---------------------- 517
Query: 539 ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLD 598
GL E + YFESM+KVYGIKP DHYACMIDLLGR+GK+ EA+ LL+
Sbjct: 518 -------------GLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLN 564
Query: 599 QMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWED 658
+M EPDAT+WK+LLSACRVHG+LELGERA NL +LEP N++PYV LSNM+S AG+WED
Sbjct: 565 RMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWED 624
Query: 659 AARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGY 718
AA +R+ MK+ GI KEPG SW+E SQVH FISEDR HPL +IYSKIDE+M+LIKEAG+
Sbjct: 625 AAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGH 684
Query: 719 VPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKY 778
VPDMNFAL +++EE KE LAYHSEKLAVAFGLLT+ +GAPIRIFKNLRVCGDCH+AMKY
Sbjct: 685 VPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKY 744
Query: 779 ISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
IS+++ RHIILRD N FHHF G CSCGD+W
Sbjct: 745 ISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/811 (59%), Positives = 590/811 (72%), Gaps = 38/811 (4%)
Query: 1 MFKLDFKILNFSLRCRSKIIGP--ARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQL 58
MF + F+ NF +C P R H + + D N+ L + S +G +DEA +L
Sbjct: 1 MFNIYFQTSNFFTKCNFHFKHPLFIRCIHGIAH-YSSNLDSNQLLSELSKNGRVDEARKL 59
Query: 59 FEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAF 118
F++M RD +TWN MI+AYAN G L EA+KLFNETP N TWSSL+ GY G ++E
Sbjct: 60 FDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGL 119
Query: 119 ELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMY 178
F QM +G +PSQYTL +VLR CS LL G+ H YAIK + N FV TGLVDMY
Sbjct: 120 RQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMY 179
Query: 179 AKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTF 238
+KCKC+ EAEYLF PD KN+V WT M+TGY+QNG KAI+CF++MR +G+ESN FTF
Sbjct: 180 SKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTF 239
Query: 239 PSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI 298
PSILTAC ++SA FG QVHGCI+ SGF NVYVQSAL+DMYAKCGDL SAR +L+ EI
Sbjct: 240 PSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEI 299
Query: 299 DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSV 358
D+ V WNSMIVG G+ +EAL LF KMH RDI+IDDFTYPSVL AS +L +SV
Sbjct: 300 DDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESV 359
Query: 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSY 418
HSL +KTGF+ K V+NAL+DMYAKQGNL CA VFN + DKDVISWTSL+TG ++G +
Sbjct: 360 HSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFH 419
Query: 419 EEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSL 478
E+AL+ F DMR + + D VV+ + SACAELTV+EFG+QVHA F+KS S LS +NSL
Sbjct: 420 EKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSL 479
Query: 479 VLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538
+ +YAKCGC+ DA RV DSM TR+VI+WTA+I+G AQN
Sbjct: 480 ITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQN---------------------- 517
Query: 539 ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLD 598
GL E + YFESM+KVYGIKP D YACMIDLLGR+GK+ EA+ LL+
Sbjct: 518 -------------GLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLN 564
Query: 599 QMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWED 658
+M EPDAT+WK+LLSACRVHG+LELGERA NL +LEP N++PYV LSNM+S AG+WED
Sbjct: 565 RMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWED 624
Query: 659 AARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGY 718
AA +R+ MK+ GI +EPG SW+E SQVH FISEDR HPL +IYSKIDE+M+LIKEAG+
Sbjct: 625 AAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGH 684
Query: 719 VPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKY 778
VPDMNFAL +++EE KE LAYHSEKLAVAFGLLT+ +GAPIRIFKNLRVCGDCH+AMKY
Sbjct: 685 VPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKY 744
Query: 779 ISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
IS+++ RHIILRD N FHHF G CSCGD+W
Sbjct: 745 ISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana] gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/754 (60%), Positives = 563/754 (74%), Gaps = 38/754 (5%)
Query: 27 HNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREA 86
H+ + K S+L L D S SG +DEA Q+F+KM +RD FTWNTMI AY+NS RL +A
Sbjct: 21 HSYADRTKLHSNL--LLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDA 78
Query: 87 KKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLK 146
+KLF P KN +W++LI GY G +EAF LFW+MQ +G +P++YTL +VLR+C+
Sbjct: 79 EKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSL 138
Query: 147 GLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTM 206
LL RGEQ HG+ IKT FDL+ VV GL+ MYA+CK I EAEYLF+ KN+V WT+M
Sbjct: 139 VLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSM 198
Query: 207 ITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGF 266
+TGYSQNG+ FKAIECFRD+R EG +SNQ+TFPS+LTACA+VSA G QVH CI+ SGF
Sbjct: 199 LTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGF 258
Query: 267 EANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKK 326
+ N+YVQSALIDMYAKC +++SAR LLE E+D+ VSWNSMIVG RQG EALS+F +
Sbjct: 259 KTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGR 318
Query: 327 MHARDIKIDDFTYPSVLNCFA-SNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQG 385
MH RD+KIDDFT PS+LNCFA S ++ A S H LIVKTG+ YK VNNAL+DMYAK+G
Sbjct: 319 MHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRG 378
Query: 386 NLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILS 445
+D A VF M +KDVISWT+L+TG ++GSY+EALK F +MR+ GI PD +V +S+LS
Sbjct: 379 IMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLS 438
Query: 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVIT 505
A AELT+LEFGQQVH ++KSG SSLSV+NSLV +Y KCG + DAN +F+SM RD+IT
Sbjct: 439 ASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLIT 498
Query: 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMD 565
WT LI+G A+NG L E+A+ YF+SM
Sbjct: 499 WTCLIVGYAKNG-----------------------------------LLEDAQRYFDSMR 523
Query: 566 KVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELG 625
VYGI PGP+HYACMIDL GRSG ++ + LL QM EPDATVWKA+L+A R HG++E G
Sbjct: 524 TVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENG 583
Query: 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQ 685
ERAA L ELEP NA+PYVQLSNMYS AG+ ++AA VR+LMKSR I KEPGCSWVE +
Sbjct: 584 ERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGK 643
Query: 686 VHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKL 745
VH F+SEDR HP +IYSK+DE+MLLIKEAGY DM+FALH++++EGKE+GLAYHSEKL
Sbjct: 644 VHSFMSEDRRHPRMVEIYSKVDEMMLLIKEAGYFADMSFALHDLDKEGKELGLAYHSEKL 703
Query: 746 AVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYI 779
AVAFGLL +P GAPIRI KNLRVCGDCH+AMK +
Sbjct: 704 AVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/770 (57%), Positives = 545/770 (70%), Gaps = 60/770 (7%)
Query: 40 NRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFF 99
N L D S SG +DEA Q+F+KM +RD FTWNTMI AY+NS RL +A++LF P KN
Sbjct: 33 NLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLADAEQLFRSNPVKNTI 92
Query: 100 TWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYA 159
+W++LI GY G +EAF LFW+MQ +G +P++YTL +VLR+C+ LL RGEQ HG+
Sbjct: 93 SWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLLLLLRGEQIHGHT 152
Query: 160 IKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKA 219
IKT FDL+ VV GL+ MYA+CK I EAEYLF KN+V WT+M+TGYSQNG+ FKA
Sbjct: 153 IKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKA 212
Query: 220 IECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDM 279
IECFRD+R +G +SNQ+TFPS+LTACA+VSA G QVHGCI+ SGF+ N+YVQSALIDM
Sbjct: 213 IECFRDLRRDGNQSNQYTFPSVLTACASVSACRVGVQVHGCIVKSGFKTNIYVQSALIDM 272
Query: 280 YAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTY 339
YAKC DL+SAR LLE E+D+ VSWNSMIVG RQG +EALS+F +MH RD+KIDDFT
Sbjct: 273 YAKCRDLESARALLEGMEVDDVVSWNSMIVGCVRQGLIEEALSMFGRMHERDMKIDDFTI 332
Query: 340 PSVLNCFASN-IDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQ 398
PS+LNCFAS+ ++ A S H LIVK G G +D A VF M
Sbjct: 333 PSILNCFASSRTEMKIASSAHCLIVKPGMR------------LTSLGIMDSALKVFEGMI 380
Query: 399 DKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQ 458
+KDVISWT+L+TG ++G YEEALK F +MR+ GI PD +V +S+LSA AELT+LEFGQQ
Sbjct: 381 EKDVISWTALVTGNTHNGFYEEALKLFCNMRVGGIYPDQIVTASVLSASAELTLLEFGQQ 440
Query: 459 VHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGK 518
VH ++KSG SSLSV+NSLV +Y KCG + DAN +F+SM RD+ITWT +I+G
Sbjct: 441 VHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCIIVG------ 494
Query: 519 GKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA 578
L E A+ YF+SM VYGI PGP+HYA
Sbjct: 495 ----------------------------------LIEEAQRYFDSMRTVYGITPGPEHYA 520
Query: 579 CMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPM 638
CMIDL GRSG ++A+ LL QM EPDATVWKA+L+A R HG++E GERAA L +LEP
Sbjct: 521 CMIDLFGRSGDFVKAEELLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMKLEPN 580
Query: 639 NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPL 698
NA+PYV LSNMYS AG+ ++AA VR+LMKSR I KEPGCSWVE +VH F+SEDR HP
Sbjct: 581 NAVPYVLLSNMYSAAGRQDEAANVRRLMKSRNINKEPGCSWVEEKGKVHSFMSEDRRHPR 640
Query: 699 RTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGA 758
+IYSK+DE+MLLIKEAGY+ DM+FALH++++EGKE+GLAYHSEKLAVAFGLL +P GA
Sbjct: 641 MVEIYSKVDEMMLLIKEAGYLADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVPSGA 700
Query: 759 PIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDY 808
PIRI KNLRVCGDCH+AMK + L + F C+ G Y
Sbjct: 701 PIRIIKNLRVCGDCHSAMKLLVTFALEE-------KLGKFCISVCNSGSY 743
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa] gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/513 (75%), Positives = 444/513 (86%)
Query: 297 EIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAK 356
E D+EVSWNS+I+G R+GF ++ALS F+KM +RD+KID++T PSVLN FAS + NA
Sbjct: 2 EFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAI 61
Query: 357 SVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHG 416
SVH LI+KTGFE YK VNNALIDMYAKQG LDCA MVF+ M DKDV+SWTSL+TG +++G
Sbjct: 62 SVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNG 121
Query: 417 SYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDN 476
SYEEA+K F MRISG+ PD + V+S+LSACAELTV++FGQQ+HA +KSG SSLSVDN
Sbjct: 122 SYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDN 181
Query: 477 SLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP 536
SLV +YAKCG I DANR FD+M TRDVI+WTALI+G AQNG+GK +LQFYDQM+A GTKP
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKP 241
Query: 537 DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKAL 596
DYITF+GLLFACSH GL + R YFE+MDKVYGIKPGP+HYACMIDLLGRSGKL EAK L
Sbjct: 242 DYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGL 301
Query: 597 LDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKW 656
L+QMV PDA VWKALL+ACRVH +LELGE AA NLFELEPMN+MPYV LSNMYS AGKW
Sbjct: 302 LNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKW 361
Query: 657 EDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEA 716
EDAAR+R+LM+SRGI KEPG SW+ETNS+V F+SEDR HPLR +IYSKIDEI++LIKEA
Sbjct: 362 EDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEA 421
Query: 717 GYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAM 776
GYVPDM+FALH+ ++E KE+GLAYHSEKLAVAFGLLT+PQGAPIRIFKNLRVCGDCHTAM
Sbjct: 422 GYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAM 481
Query: 777 KYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
KY S VY RHIILRDSN FHHF G CSCGDYW
Sbjct: 482 KYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/530 (70%), Positives = 433/530 (81%)
Query: 40 NRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFF 99
N+ L D S SG IDEA +F+K+ +RD F+WNTMIAAYANSGRL +AK+LF E P K+
Sbjct: 26 NQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANSGRLTDAKQLFCEAPLKSSI 85
Query: 100 TWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYA 159
TWSSLI G+ Y DIEAFEL+ QMQ EG RP+ YTL ++LRLCS G LQ+GE+ HGYA
Sbjct: 86 TWSSLISGFCKYEFDIEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYA 145
Query: 160 IKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKA 219
IKT D N FVVT LVD+YAKC+CI EAEY+F+M D KNH WT M+TGYS NG GF+A
Sbjct: 146 IKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRA 205
Query: 220 IECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDM 279
I+CFRDMR EGVESNQFTFPSILTAC AVS FG QVHGCI+ SGF AN++VQSAL+DM
Sbjct: 206 IKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQSALVDM 265
Query: 280 YAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTY 339
YAKC DL+SA R+LE E+++ VSWNSMIVG R+GF EALSLF +MHARDIKIDD+TY
Sbjct: 266 YAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMHARDIKIDDYTY 325
Query: 340 PSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD 399
PSVLN FAS D+ +AKS H LI+KTGF Y VNNAL+DMYAKQGNLD AF VFN M D
Sbjct: 326 PSVLNSFASMKDIQSAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQMPD 385
Query: 400 KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQV 459
KDV+SWTSL+TG +Y+GSYE+A+K F DMRI+G+CPD +V++S+LSACAELTV EFGQQV
Sbjct: 386 KDVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQV 445
Query: 460 HAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKG 519
HA LKSG CSSLS+DNSLV +YAKCG I DAN VFDSM RDVI+WTALI+G AQNG+G
Sbjct: 446 HATILKSGLCSSLSIDNSLVTMYAKCGGIEDANYVFDSMQIRDVISWTALIVGYAQNGRG 505
Query: 520 KEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG 569
K++L FYDQM+A GTKPD+ITF+GLLFACSH GL E+ R YFESMDK YG
Sbjct: 506 KDSLHFYDQMIATGTKPDFITFIGLLFACSHTGLVEDGRRYFESMDKEYG 555
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 809 | ||||||
| TAIR|locus:2098901 | 783 | AT3G61170 [Arabidopsis thalian | 0.619 | 0.639 | 0.581 | 4.4e-246 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.661 | 0.629 | 0.424 | 1.2e-151 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.906 | 0.844 | 0.367 | 5.8e-150 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.814 | 0.665 | 0.403 | 9.6e-148 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.915 | 0.915 | 0.388 | 2.9e-146 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.917 | 0.697 | 0.378 | 1.1e-144 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.908 | 0.825 | 0.378 | 9.6e-144 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.918 | 0.746 | 0.388 | 6.2e-142 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.903 | 0.839 | 0.378 | 1.9e-140 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.944 | 0.926 | 0.365 | 4e-138 |
| TAIR|locus:2098901 AT3G61170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1526 (542.2 bits), Expect = 4.4e-246, Sum P(2) = 4.4e-246
Identities = 293/504 (58%), Positives = 372/504 (73%)
Query: 27 HNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREA 86
H+ + K S+L L D S SG +DEA Q+F+KM +RD FTWNTMI AY+NS RL +A
Sbjct: 21 HSYADRTKLHSNL--LLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDA 78
Query: 87 KKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLK 146
+KLF P KN +W++LI GY G +EAF LFW+MQ +G +P++YTL +VLR+C+
Sbjct: 79 EKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSL 138
Query: 147 GLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTM 206
LL RGEQ HG+ IKT FDL+ VV GL+ MYA+CK I EAEYLF+ KN+V WT+M
Sbjct: 139 VLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSM 198
Query: 207 ITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGF 266
+TGYSQNG+ FKAIECFRD+R EG +SNQ+TFPS+LTACA+VSA G QVH CI+ SGF
Sbjct: 199 LTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGF 258
Query: 267 EANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKK 326
+ N+YVQSALIDMYAKC +++SAR LLE E+D+ VSWNSMIVG RQG EALS+F +
Sbjct: 259 KTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGR 318
Query: 327 MHARDIKIDDFTYPSVLNCFA-SNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQG 385
MH RD+KIDDFT PS+LNCFA S ++ A S H LIVKTG+ YK VNNAL+DMYAK+G
Sbjct: 319 MHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRG 378
Query: 386 NLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILS 445
+D A VF M +KDVISWT+L+TG ++GSY+EALK F +MR+ GI PD +V +S+LS
Sbjct: 379 IMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLS 438
Query: 446 ACAELTVLEFGQQVHAVFLKSGGCXXXXXXXXXXXXYAKCGCINDANRVFDSMHTRDVIT 505
A AELT+LEFGQQVH ++KSG Y KCG + DAN +F+SM RD+IT
Sbjct: 439 ASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLIT 498
Query: 506 WTALIMGCAQNGKGKEALQFYDQM 529
WT LI+G A+NG ++A +++D M
Sbjct: 499 WTCLIVGYAKNGLLEDAQRYFDSM 522
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 1.2e-151, Sum P(2) = 1.2e-151
Identities = 235/553 (42%), Positives = 338/553 (61%)
Query: 274 SALIDMYAKCGDLDSARRLLEYSEID----NEVSWNSMIVGFARQGFHKEALSLFKKMHA 329
+A++ Y++ G + A RL E + + + V+W++ I G+A++G EAL + ++M +
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 330 RDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK-------TGFEGYKFVNNALIDMYA 382
IK ++ T SVL+ AS L + K +H +K G V N LIDMYA
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418
Query: 383 KQGNLDCAFMVFNLM--QDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGIC---PDH 437
K +D A +F+ + +++DV++WT +I G + HG +AL+ S+M C P+
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM-FEEDCQTRPNA 477
Query: 438 VVVSSILSACAELTVLEFGQQVHAVFLKSG-GCXXXXXXXXXXXXYAKCGCINDANRVFD 496
+S L ACA L L G+Q+HA L++ YAKCG I+DA VFD
Sbjct: 478 FTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFD 537
Query: 497 SMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAEN 556
+M ++ +TWT+L+ G +G G+EAL +D+M G K D +T + +L+ACSH+G+ +
Sbjct: 538 NMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQ 597
Query: 557 ARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSAC 616
YF M V+G+ PGP+HYAC++DLLGR+G+L A L+++M EP VW A LS C
Sbjct: 598 GMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCC 657
Query: 617 RVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPG 676
R+HG +ELGE AA + EL + Y LSN+Y+ AG+W+D R+R LM+ +G++K PG
Sbjct: 658 RIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPG 717
Query: 677 CSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEI 736
CSWVE F D+ HP +IY + + M IK+ GYVP+ FALH+V++E K+
Sbjct: 718 CSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDD 777
Query: 737 GLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFH 796
L HSEKLA+A+G+LT PQGA IRI KNLRVCGDCHTA Y+S + IILRDS+RFH
Sbjct: 778 LLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFH 837
Query: 797 HFKAGNCSCGDYW 809
HFK G+CSC YW
Sbjct: 838 HFKNGSCSCKGYW 850
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1404 (499.3 bits), Expect = 5.8e-150, Sum P(2) = 5.8e-150
Identities = 272/741 (36%), Positives = 437/741 (58%)
Query: 72 TMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRP 131
+++ Y ++ +K+F+E +N TW++LI GY+ ++ E LF +MQ EG +P
Sbjct: 133 SLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQP 192
Query: 132 SQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLF 191
+ +T L + + +G+ RG Q H +K D V L+++Y KC + +A LF
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 252
Query: 192 KMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSAR 251
+ K+ V W +MI+GY+ NG +A+ F MR+ V ++ +F S++ CA +
Sbjct: 253 DK-TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKEL 311
Query: 252 DFGAQVHGCILSSGFEANVYVQSALIDMYAKC-GDLDSARRLLEYSEIDNEVSWNSMIVG 310
F Q+H ++ GF + +++AL+ Y+KC LD+ R E + N VSW +MI G
Sbjct: 312 RFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISG 371
Query: 311 FARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370
F + +EA+ LF +M + ++ ++FTY +L + + + VH+ +VKT +E
Sbjct: 372 FLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA----LPVISPSEVHAQVVKTNYERS 427
Query: 371 KFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRI 430
V AL+D Y K G ++ A VF+ + DKD+++W++++ G A G E A+K F ++
Sbjct: 428 STVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTK 487
Query: 431 SGICPDHVVVSSILSACAELTV-LEFGQQVHAVFLKSGGCXXXXXXXXXXXXYAKCGCIN 489
GI P+ SSIL+ CA + G+Q H +KS YAK G I
Sbjct: 488 GGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIE 547
Query: 490 DANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACS 549
A VF +D+++W ++I G AQ+G+ +AL + +M R K D +TF+G+ AC+
Sbjct: 548 SAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACT 607
Query: 550 HAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVW 609
HAGL E YF+ M + I P +H +CM+DL R+G+L +A +++ M +T+W
Sbjct: 608 HAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIW 667
Query: 610 KALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669
+ +L+ACRVH ELG AA + ++P ++ YV LSNMY+ +G W++ A+VRKLM R
Sbjct: 668 RTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNER 727
Query: 670 GIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNV 729
++KEPG SW+E ++ + F++ DR HPL+ IY K++++ +K+ GY PD ++ L ++
Sbjct: 728 NVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDI 787
Query: 730 EEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIIL 789
++E KE LA HSE+LA+AFGL+ P+G+P+ I KNLRVCGDCH +K I+ + R I++
Sbjct: 788 DDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVV 847
Query: 790 RDSNRFHHFKA-GNCSCGDYW 809
RDSNRFHHF + G CSCGD+W
Sbjct: 848 RDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1354 (481.7 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 267/662 (40%), Positives = 401/662 (60%)
Query: 149 LQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMIT 208
L G+Q H A+K DL V L++MY K + A +F + ++ ++W ++I
Sbjct: 331 LALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSE-RDLISWNSVIA 389
Query: 209 GYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAV-SARDFGAQVHGCILSSGFE 267
G +QNG +A+ F + G++ +Q+T S+L A +++ QVH +
Sbjct: 390 GIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNV 449
Query: 268 ANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKM 327
++ +V +ALID Y++ + A L E D V+WN+M+ G+ + + L LF M
Sbjct: 450 SDSFVSTALIDAYSRNRCMKEAEILFERHNFDL-VAWNAMMAGYTQSHDGHKTLKLFALM 508
Query: 328 HARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNL 387
H + + DDFT +V +N K VH+ +K+G++ +V++ ++DMY K G++
Sbjct: 509 HKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 568
Query: 388 DCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSAC 447
A F+ + D ++WT++I+GC +G E A FS MR+ G+ PD ++++ A
Sbjct: 569 SAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628
Query: 448 AELTVLEFGQQVHAVFLKSGGCXXXXXXXXXXXXYAKCGCINDANRVFDSMHTRDVITWT 507
+ LT LE G+Q+HA LK YAKCG I+DA +F + ++ W
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688
Query: 508 ALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKV 567
A+++G AQ+G+GKE LQ + QM + G KPD +TF+G+L ACSH+GL A + SM
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748
Query: 568 YGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGER 627
YGIKP +HY+C+ D LGR+G + +A+ L++ M E A++++ LL+ACRV GD E G+R
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808
Query: 628 AANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVH 687
A L ELEP+++ YV LSNMY+ A KW++ R +MK ++K+PG SW+E +++H
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
Query: 688 IFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAV 747
IF+ +DR + IY K+ +++ IK+ GYVP+ +F L +VEEE KE L YHSEKLAV
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 928
Query: 748 AFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGD 807
AFGLL+ P PIR+ KNLRVCGDCH AMKYI+ VY R I+LRD+NRFH FK G CSCGD
Sbjct: 929 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988
Query: 808 YW 809
YW
Sbjct: 989 YW 990
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1385 (492.6 bits), Expect = 2.9e-146, Sum P(2) = 2.9e-146
Identities = 290/747 (38%), Positives = 434/747 (58%)
Query: 65 RDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYG-LDIEAFELFWQ 123
++ F +++ + G + EA ++F K + +++ G++ LD +A + F +
Sbjct: 67 QEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLD-KALQFFVR 125
Query: 124 MQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKC 183
M+ + P Y +L++C + L+ G++ HG +K+ F L+ F +TGL +MYAKC+
Sbjct: 126 MRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ 185
Query: 184 IFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILT 243
+ EA +F P+ ++ V+W T++ GYSQNG A+E + M E ++ + T S+L
Sbjct: 186 VNEARKVFDRMPE-RDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244
Query: 244 ACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVS 303
A +A+ G ++HG + SGF++ V + +AL+DMYAKCG L++AR+L + N VS
Sbjct: 245 AVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVS 304
Query: 304 WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIV 363
WNSMI + + KEA+ +F+KM +K D + L+ A DL + +H L V
Sbjct: 305 WNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSV 364
Query: 364 KTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALK 423
+ G + V N+LI MY K +D A +F +Q + ++SW ++I G A +G +AL
Sbjct: 365 ELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALN 424
Query: 424 YFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCXXXXXXXXXXXXYA 483
YFS MR + PD S+++A AEL++ + +H V ++S YA
Sbjct: 425 YFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYA 484
Query: 484 KCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGT-KPDYITFV 542
KCG I A +FD M R V TW A+I G +G GK AL+ +++M +GT KP+ +TF+
Sbjct: 485 KCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM-QKGTIKPNGVTFL 543
Query: 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG 602
++ ACSH+GL E F M + Y I+ DHY M+DLLGR+G+L EA + QM
Sbjct: 544 SVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603
Query: 603 EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARV 662
+P V+ A+L AC++H ++ E+AA LFEL P + +V L+N+Y A WE +V
Sbjct: 604 KPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQV 663
Query: 663 RKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDM 722
R M +G+RK PGCS VE ++VH F S HP IY+ +++++ IKEAGYVPD
Sbjct: 664 RVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT 723
Query: 723 NFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAV 782
N L VE + KE L+ HSEKLA++FGLL G I + KNLRVC DCH A KYIS V
Sbjct: 724 NLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLV 782
Query: 783 YLRHIILRDSNRFHHFKAGNCSCGDYW 809
R I++RD RFHHFK G CSCGDYW
Sbjct: 783 TGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
Identities = 282/745 (37%), Positives = 434/745 (58%)
Query: 66 DGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQ 125
D + N +++ Y + G L A+ +F+ ++ T+++LI G S G +A ELF +M
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 126 LEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIF 185
L+G P TL +++ CS G L RG+Q H Y K F N + L+++YAKC I
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441
Query: 186 EA-EYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTA 244
A +Y + + +N V W M+ Y + FR M++E + NQ+T+PSIL
Sbjct: 442 TALDYFLET--EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499
Query: 245 CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSW 304
C + + G Q+H I+ + F+ N YV S LIDMYAK G LD+A +L + VSW
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 559
Query: 305 NSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364
+MI G+ + F +AL+ F++M R I+ D+ + ++ A L + +H+
Sbjct: 560 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV 619
Query: 365 TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKY 424
+GF NAL+ +Y++ G ++ +++ F + D I+W +L++G G+ EEAL+
Sbjct: 620 SGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 679
Query: 425 FSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCXXXXXXXXXXXXYAK 484
F M GI ++ S + A +E ++ G+QVHAV K+G YAK
Sbjct: 680 FVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAK 739
Query: 485 CGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL 544
CG I+DA + F + T++ ++W A+I +++G G EAL +DQM+ +P+++T VG+
Sbjct: 740 CGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 799
Query: 545 LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604
L ACSH GL + YFESM+ YG+ P P+HY C++D+L R+G L AK + +M +P
Sbjct: 800 LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 859
Query: 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRK 664
DA VW+ LLSAC VH ++E+GE AA++L ELEP ++ YV LSN+Y+ + KW+ R+
Sbjct: 860 DALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQ 919
Query: 665 LMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNF 724
MK +G++KEPG SW+E + +H F D+ HPL +I+ ++ E GYV D
Sbjct: 920 KMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFS 979
Query: 725 ALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYL 784
L+ ++ E K+ + HSEKLA++FGLL+LP PI + KNLRVC DCH +K++S V
Sbjct: 980 LLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSN 1039
Query: 785 RHIILRDSNRFHHFKAGNCSCGDYW 809
R II+RD+ RFHHF+ G CSC DYW
Sbjct: 1040 REIIVRDAYRFHHFEGGACSCKDYW 1064
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| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
Identities = 287/758 (37%), Positives = 441/758 (58%)
Query: 71 NTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYR 130
NT++ Y G K+F+ +N +W+SLI ++ A E F M E
Sbjct: 137 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196
Query: 131 PSQYTLDNVLRLCSL----KGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFE 186
PS +TL +V+ CS +GL+ G+Q H Y ++ +LN+F++ LV MY K +
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMM-GKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLAS 254
Query: 187 AEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACA 246
++ L F G++ V W T+++ QN +A+E R+M +EGVE ++FT S+L AC+
Sbjct: 255 SKVLLGSF-GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 313
Query: 247 AVSARDFGAQVHGCILSSG-FEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVS-W 304
+ G ++H L +G + N +V SAL+DMY C + S RR+ + D ++ W
Sbjct: 314 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD-GMFDRKIGLW 372
Query: 305 NSMIVGFARQGFHKEALSLFKKMH-ARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIV 363
N+MI G+++ KEAL LF M + + + T V+ + + +++H +V
Sbjct: 373 NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 432
Query: 364 KTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALK 423
K G + +FV N L+DMY++ G +D A +F M+D+D+++W ++ITG + +E+AL
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492
Query: 424 YFSDM-----RIS------GICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCXXX 472
M ++S + P+ + + +IL +CA L+ L G+++HA +K+
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 552
Query: 473 XXXXXXXXXYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLAR 532
YAKCGC+ + +VFD + ++VITW +IM +G G+EA+ M+ +
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQ 612
Query: 533 GTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592
G KP+ +TF+ + ACSH+G+ + F M YG++P DHYAC++DLLGR+G++ E
Sbjct: 613 GVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKE 672
Query: 593 AKALLDQMVGEPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651
A L++ M + + A W +LL A R+H +LE+GE AA NL +LEP A YV L+N+YS
Sbjct: 673 AYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYS 732
Query: 652 TAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIML 711
+AG W+ A VR+ MK +G+RKEPGCSW+E +VH F++ D HP + ++ +
Sbjct: 733 SAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWE 792
Query: 712 LIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGD 771
+++ GYVPD + LHNVEE+ KEI L HSEKLA+AFG+L G IR+ KNLRVC D
Sbjct: 793 RMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCND 852
Query: 772 CHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
CH A K+IS + R IILRD RFH FK G CSCGDYW
Sbjct: 853 CHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
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| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 293/755 (38%), Positives = 437/755 (57%)
Query: 66 DGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQ 125
D F + +++A+A SG L A+K+FN+ +N T + L+ G EA +LF M
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301
Query: 126 -LEGYRPSQYT--LDNVLRLCSLKGL-LQRGEQFHGYAIKT-CFDLNAFVVTGLVDMYAK 180
+ P Y L + + + L++G + HG+ I T D + GLV+MYAK
Sbjct: 302 SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAK 361
Query: 181 CKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPS 240
C I +A +F D K+ V+W +MITG QNG +A+E ++ MR + FT S
Sbjct: 362 CGSIADARRVFYFMTD-KDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLIS 420
Query: 241 ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDN 300
L++CA++ G Q+HG L G + NV V +AL+ +YA+ G L+ R++ +
Sbjct: 421 SLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHD 480
Query: 301 EVSWNSMIVGFAR-QGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVH 359
+VSWNS+I AR + EA+ F K++ T+ SVL+ +S K +H
Sbjct: 481 QVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIH 540
Query: 360 SLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK-DVISWTSLITGCAYHGSY 418
L +K NALI Y K G +D +F+ M ++ D ++W S+I+G ++
Sbjct: 541 GLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELL 600
Query: 419 EEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCXXXXXXXXX 478
+AL M +G D + +++LSA A + LE G +VHA +++
Sbjct: 601 AKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSAL 660
Query: 479 XXXYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARG-TKPD 537
Y+KCG ++ A R F++M R+ +W ++I G A++G+G+EAL+ ++ M G T PD
Sbjct: 661 VDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPD 720
Query: 538 YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALL 597
++TFVG+L ACSHAGL E +FESM YG+ P +H++CM D+LGR+G+L + + +
Sbjct: 721 HVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFI 780
Query: 598 DQMVGEPDATVWKALLSAC-RVHG-DLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655
++M +P+ +W+ +L AC R +G ELG++AA LF+LEP NA+ YV L NMY+ G+
Sbjct: 781 EKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGR 840
Query: 656 WEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKE 715
WED + RK MK ++KE G SWV VH+F++ D+ HP IY K+ E+ +++
Sbjct: 841 WEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRD 900
Query: 716 AGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQGA-PIRIFKNLRVCGDCHT 774
AGYVP FAL+++E+E KE L+YHSEKLAVAF L PIRI KNLRVCGDCH+
Sbjct: 901 AGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHS 960
Query: 775 AMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
A KYIS + R IILRDSNRFHHF+ G CSC D+W
Sbjct: 961 AFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
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| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 278/735 (37%), Positives = 417/735 (56%)
Query: 77 YANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTL 136
Y N G L+EA ++F+E + W+ L+ + G + LF +M G YT
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Query: 137 DNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD 196
V + S + GEQ HG+ +K+ F V LV Y K + + A +F +
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE 258
Query: 197 GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQ 256
++ ++W ++I GY NG K + F M V G+E + T S+ CA G
Sbjct: 259 -RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317
Query: 257 VHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGF 316
VH + + F + L+DMY+KCGDLDSA+ + + VS+ SMI G+AR+G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 317 HKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYK-FVNN 375
EA+ LF++M I D +T +VLNC A L+ K VH I + G+ FV+N
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL-GFDIFVSN 436
Query: 376 ALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDM-RISGIC 434
AL+DMYAK G++ A +VF+ M+ KD+ISW ++I G + + EAL F+ +
Sbjct: 437 ALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS 496
Query: 435 PDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCXXXXXXXXXXXXYAKCGCINDANRV 494
PD V+ +L ACA L+ + G+++H +++G YAKCG + A+ +
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 556
Query: 495 FDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLA 554
FD + ++D+++WT +I G +G GKEA+ ++QM G + D I+FV LL+ACSH+GL
Sbjct: 557 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 616
Query: 555 ENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLS 614
+ +F M I+P +HYAC++D+L R+G LI+A ++ M PDAT+W ALL
Sbjct: 617 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLC 676
Query: 615 ACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKE 674
CR+H D++L E+ A +FELEP N YV ++N+Y+ A KWE R+RK + RG+RK
Sbjct: 677 GCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN 736
Query: 675 PGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGK 734
PGCSW+E +V+IF++ D +P +I + + ++ + E GY P +AL + EE K
Sbjct: 737 PGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEK 796
Query: 735 EIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNR 794
E L HSEKLA+A G+++ G IR+ KNLRVCGDCH K++S + R I+LRDSNR
Sbjct: 797 EEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNR 856
Query: 795 FHHFKAGNCSCGDYW 809
FH FK G+CSC +W
Sbjct: 857 FHQFKDGHCSCRGFW 871
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| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
Identities = 285/780 (36%), Positives = 443/780 (56%)
Query: 40 NRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFF 99
N + D G++ A +++++M ++ + NTMI+ + +G + A+ LF+ P +
Sbjct: 52 NFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVV 111
Query: 100 TWSSLIYGYS-NYGLDIEAFELFWQMQLEGY--RPSQYTLDNVLRLCSLKGLLQRGE-QF 155
TW+ L+ Y+ N D EAF+LF QM P T +L C+ + Q Q
Sbjct: 112 TWTILMGWYARNSHFD-EAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN-DAVPQNAVGQV 169
Query: 156 HGYAIKTCFDLNAFVVTG--LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQN 213
H +A+K FD N F+ L+ Y + + + A LF+ P+ K+ V + T+ITGY ++
Sbjct: 170 HAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE-KDSVTFNTLITGYEKD 228
Query: 214 GYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDF--GAQVHGCILSSGFEANVY 271
G ++I F MR G + + FTF +L A V DF G Q+H +++GF +
Sbjct: 229 GLYTESIHLFLKMRQSGHQPSDFTFSGVLKA--VVGLHDFALGQQLHALSVTTGFSRDAS 286
Query: 272 VQSALIDMYAKCGDLDSARRLL-EYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHAR 330
V + ++D Y+K + R L E E+D VS+N +I +++ ++ +L F++M
Sbjct: 287 VGNQILDFYSKHDRVLETRMLFDEMPELDF-VSYNVVISSYSQADQYEASLHFFREMQCM 345
Query: 331 DIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCA 390
+F + ++L+ A+ L + +H + + V N+L+DMYAK + A
Sbjct: 346 GFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEA 405
Query: 391 FMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAEL 450
++F + + +SWT+LI+G G + LK F+ MR S + D +++L A A
Sbjct: 406 ELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASF 465
Query: 451 TVLEFGQQVHAVFLKSGGCXXXXXXXXXXXXYAKCGCINDANRVFDSMHTRDVITWTALI 510
L G+Q+HA ++SG YAKCG I DA +VF+ M R+ ++W ALI
Sbjct: 466 ASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALI 525
Query: 511 MGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGI 570
A NG G+ A+ + +M+ G +PD ++ +G+L ACSH G E YF++M +YGI
Sbjct: 526 SAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGI 585
Query: 571 KPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAAN 630
P HYACM+DLLGR+G+ EA+ L+D+M EPD +W ++L+ACR+H + L ERAA
Sbjct: 586 TPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAE 645
Query: 631 NLFELEPM-NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIF 689
LF +E + +A YV +SN+Y+ AG+WE V+K M+ RGI+K P SWVE N ++H+F
Sbjct: 646 KLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVF 705
Query: 690 ISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAF 749
S D+ HP +I KI+E+ I+ GY PD + + +V+E+ K L YHSE+LAVAF
Sbjct: 706 SSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAF 765
Query: 750 GLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
L++ P+G PI + KNLR C DCH A+K IS + R I +RD++RFHHF G CSCGDYW
Sbjct: 766 ALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00026234001 | SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (748 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 809 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-169 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-67 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-62 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-53 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-27 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 8e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 574 bits (1481), Expect = 0.0
Identities = 277/737 (37%), Positives = 429/737 (58%), Gaps = 4/737 (0%)
Query: 71 NTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYR 130
N M++ + G L A +F + P ++ F+W+ L+ GY+ G EA L+ +M G R
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 131 PSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYL 190
P YT VLR C L RG + H + ++ F+L+ VV L+ MY KC + A +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 191 FKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSA 250
F P ++ ++W MI+GY +NG + +E F MR V+ + T S+++AC +
Sbjct: 245 FDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 251 RDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVG 310
G ++HG ++ +GF +V V ++LI MY G A ++ E + VSW +MI G
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 311 FARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370
+ + G +AL + M ++ D+ T SVL+ A DL+ +H L + G Y
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 371 KFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRI 430
V NALI+MY+K +D A VF+ + +KDVISWTS+I G + EAL +F M +
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 431 SGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIND 490
+ + P+ V + + LSACA + L G+++HA L++G + N+L+ +Y +CG +N
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 491 ANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH 550
A F+S H +DV++W L+ G +GKG A++ +++M+ G PD +TF+ LL ACS
Sbjct: 543 AWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 551 AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWK 610
+G+ YF SM++ Y I P HYAC++DLLGR+GKL EA +++M PD VW
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 611 ALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670
ALL+ACR+H +ELGE AA ++FEL+P + Y+ L N+Y+ AGKW++ ARVRK M+ G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 671 IRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVE 730
+ +PGCSWVE +VH F+++D HP +I + ++ +K +G + ++ +E
Sbjct: 722 LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIE 781
Query: 731 EEGKEIGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILR 790
+I HSE+LA+AFGL+ G PI + KNL +C +CH +K+IS + R I +R
Sbjct: 782 VSKDDI-FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840
Query: 791 DSNRFHHFKAGNCSCGD 807
D+ +FHHFK G CSCGD
Sbjct: 841 DTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 505 bits (1303), Expect = e-169
Identities = 229/597 (38%), Positives = 361/597 (60%), Gaps = 9/597 (1%)
Query: 218 KAIECFRDMRVEGVESNQFTFPS-----ILTACAAVSARDFGAQVHGCILSSGFEANVYV 272
+A+E F + FT P+ ++ AC A+ + V+ + SSGFE + Y+
Sbjct: 105 EALELFEILEAGC----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 273 QSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDI 332
+ ++ M+ KCG L ARRL + N SW ++I G G ++EA +LF++M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 333 KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFM 392
+ T+ +L A + +H ++KTG G FV+ ALIDMY+K G+++ A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 393 VFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTV 452
VF+ M +K ++W S++ G A HG EEAL + +MR SG+ D S ++ + L +
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 453 LEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMG 512
LE +Q HA +++G + + +LV +Y+K G + DA VFD M +++I+W ALI G
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400
Query: 513 CAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKP 572
+G+G +A++ +++M+A G P+++TF+ +L AC ++GL+E F+SM + + IKP
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460
Query: 573 GPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNL 632
HYACMI+LLGR G L EA A++ + +P +W ALL+ACR+H +LELG AA L
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520
Query: 633 FELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISE 692
+ + P YV L N+Y+++G+ +AA+V + +K +G+ P C+W+E Q H F S
Sbjct: 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580
Query: 693 DRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLL 752
DR HP +IY K+DE+M I E GYV + N L +V+E+ +++ YHSEKLA+AFGL+
Sbjct: 581 DRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640
Query: 753 TLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809
+ P++I ++ R+C DCH +K+I+ V R I++RD++RFHHFK G CSCGDYW
Sbjct: 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 2e-67
Identities = 143/478 (29%), Positives = 232/478 (48%), Gaps = 38/478 (7%)
Query: 39 LNRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNF 98
+N + + G++ A +F++M RD +WN MI+ Y F+N
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY-----------------FEN- 266
Query: 99 FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGY 158
G +E ELF+ M+ P T+ +V+ C L G + G + HGY
Sbjct: 267 -------------GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 159 AIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLF-KMFPDGKNHVAWTTMITGYSQNGYGF 217
+KT F ++ V L+ MY EAE +F +M + K+ V+WT MI+GY +NG
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKDAVSWTAMISGYEKNGLPD 371
Query: 218 KAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALI 277
KA+E + M + V ++ T S+L+ACA + D G ++H G + V V +ALI
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431
Query: 278 DMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDF 337
+MY+KC +D A + + +SW S+I G EAL F++M +K +
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490
Query: 338 TYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLM 397
T + L+ A L K +H+ +++TG F+ NAL+D+Y + G ++ A+ FN
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS- 549
Query: 398 QDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQ 457
+KDV+SW L+TG HG A++ F+ M SG+ PD V S+L AC+ ++ G
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 458 QV-HAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH-TRDVITWTALIMGC 513
+ H++ K +L +V + + G + +A + M T D W AL+ C
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (566), Expect = 4e-62
Identities = 137/491 (27%), Positives = 234/491 (47%), Gaps = 47/491 (9%)
Query: 116 EAFELFWQMQLEG-YRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGL 174
EA ELF ++ + T D ++ C ++ + + + + F+ + +++ +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 175 VDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESN 234
+ M+ KC + +A LF P+ +N +W T+I G G +A FR+M +G ++
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 235 QFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLE 294
TF +L A A + + G Q+H C+L +G + +V ALIDMY+KCGD++ AR + +
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 295 YSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNN 354
V+WNSM+ G+A G+ +EAL L+ +M + ID FT+ ++ F+ L +
Sbjct: 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343
Query: 355 AKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAY 414
AK H+ +++TGF N AL+D+Y+K G ++ A VF+ M K++ISW +LI G
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403
Query: 415 HGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSV 474
HG +A++ F M G+ P+HV ++LSAC
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR-------------------------- 437
Query: 475 DNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGT 534
Y+ G +F SM I A+ C G+E L D+ A
Sbjct: 438 -------YS--GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL--LDEAYAMIR 486
Query: 535 KPDYITFV----GLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGK 589
+ + V LL AC E R + +K+YG+ P ++Y +++L SG+
Sbjct: 487 RAPFKPTVNMWAALLTACRIHKNLELGRL---AAEKLYGMGPEKLNNYVVLLNLYNSSGR 543
Query: 590 LIEAKALLDQM 600
EA +++ +
Sbjct: 544 QAEAAKVVETL 554
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (501), Expect = 2e-53
Identities = 101/358 (28%), Positives = 186/358 (51%), Gaps = 3/358 (0%)
Query: 64 DRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQ 123
+ D + N ++ + G L +A++LF+E P +N +W ++I G + G EAF LF +
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 124 MQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKC 183
M +G T +LR + G + G+Q H +KT + FV L+DMY+KC
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 184 IFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILT 243
I +A +F P+ K VAW +M+ GY+ +GY +A+ + +MR GV +QFTF ++
Sbjct: 275 IEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 244 ACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVS 303
+ ++ + Q H ++ +GF ++ +AL+D+Y+K G ++ AR + + N +S
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393
Query: 304 WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLN-CFASNIDLNNAKSVHSLI 362
WN++I G+ G +A+ +F++M A + + T+ +VL+ C S + + S+
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 363 VKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVIS-WTSLITGCAYHGSYE 419
+ +I++ ++G LD A+ + K ++ W +L+T C H + E
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-27
Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 33/206 (16%)
Query: 42 ALVD-FSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFT 100
AL+D +S G+I++A +F+ M ++ WN+M+A YA
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA---------------------- 301
Query: 101 WSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAI 160
++GYS EA L+++M+ G Q+T ++R+ S LL+ +Q H I
Sbjct: 302 ----LHGYSE-----EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 161 KTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAI 220
+T F L+ T LVD+Y+K + +A +F P KN ++W +I GY +G G KA+
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAV 411
Query: 221 ECFRDMRVEGVESNQFTFPSILTACA 246
E F M EGV N TF ++L+AC
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-26
Identities = 52/132 (39%), Positives = 67/132 (50%), Gaps = 23/132 (17%)
Query: 675 PGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGK 734
PGC W S+ +S D HP +E+ IK G VP+ H+V+ E
Sbjct: 1 PGCVW----SEGKKTLSGDGSHPT------SKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 735 EIG------LAYHSEKLAVAFGLLTLPQGAPIRIFKNL-RVCGDCHTAMKYISAVYLRHI 787
LA H+EK A+A+GLLT RI K L R+CGDCH +YI+ R I
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 788 ILRDSNRFHHFK 799
I+RD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-15
Identities = 70/299 (23%), Positives = 120/299 (40%), Gaps = 45/299 (15%)
Query: 412 CAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSS 471
C+ HG E+ALK M+ + D ++ C +E G +V + L S
Sbjct: 62 CS-HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 472 LSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLA 531
+ + N+++ ++ + G + A VF M RD+ +W L+ G A+ G EAL Y +ML
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 532 RGTKPDYITFVGLLFACSHAGLAENARWYFESMDKV-YGIKPGPDHYACMIDLLGRSGKL 590
G +PD TF +L C G+ + AR V +G + D +I + + G +
Sbjct: 181 AGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238
Query: 591 IEAKALLDQMVG----------------------------------EPDATVWKALLSAC 616
+ A+ + D+M +PD +++SAC
Sbjct: 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298
Query: 617 RVHGDLELGER----AANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671
+ GD LG F ++ L MY + G W +A +V M+++
Sbjct: 299 ELLGDERLGREMHGYVVKTGFA---VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 6e-15
Identities = 91/439 (20%), Positives = 184/439 (41%), Gaps = 56/439 (12%)
Query: 145 LKGLLQRGEQFHGYA-------IKTCFDL-NAFVVTGLVDM--------YAKCK---CIF 185
+ G + E Y IK C DL GL+DM + CK +
Sbjct: 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK 423
Query: 186 EAEYLFKMFPDGK-NHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTA 244
EA K+ + + + SQ+ G A+ R ++ G++++ + ++++
Sbjct: 424 EAFRFAKLIRNPTLSTFNMLMSVCASSQDIDG--ALRVLRLVQEAGLKADCKLYTTLIST 481
Query: 245 CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDS---ARRLLEYSEID-N 300
CA D +V ++++G EANV+ ALID A+ G + A ++ + +
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 301 EVSWNSMIVGFARQGFHKEALSLFKKMHA--RDIKIDDFTYPSVLNCFASNIDLNNAKSV 358
V +N++I + G A + +M A I D T +++ A+ ++ AK V
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDV----ISWTSLITGCAY 414
+ +I + +G V ++ +++G+ D A +++ M+ K V + +++L+ +
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 415 HGSYEEALKYFSDMRISGICPDHVVVSSILSACAEL----TVLEFGQQVHAVFLKSGGCS 470
G ++A + D R GI V SS++ AC+ LE + + ++ L+
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR----P 717
Query: 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHTRD----------VITWTALIMGCAQNGKGK 520
++S N+L+ A C + N++ ++ IT++ L++ +
Sbjct: 718 TVSTMNALIT--ALC----EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 521 EALQFYDQMLARGTKPDYI 539
L Q G KP+ +
Sbjct: 772 VGLDLLSQAKEDGIKPNLV 790
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 61/263 (23%), Positives = 121/263 (46%), Gaps = 14/263 (5%)
Query: 376 ALIDMYAKQGNLDCAFMVFNLMQDKDV----ISWTSLITGCAYHGSYEEALKYFSDMRIS 431
ALID A+ G + AF + +M+ K+V + + +LI+ C G+ + A ++M+
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 432 G--ICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIN 489
I PDH+ V +++ ACA ++ ++V+ + + + V V ++ G +
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 490 DANRVFDSMHTRDV----ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545
A ++D M + V + ++AL+ G +A + +G K +++ L+
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQM--VG- 602
ACS+A + A +E + K ++P +I L +L +A +L +M +G
Sbjct: 692 GACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 603 EPDATVWKALLSACRVHGDLELG 625
P+ + LL A D ++G
Sbjct: 751 CPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 42/308 (13%)
Query: 375 NALIDMYAKQGNLDCAFMVFNLMQDK----DVISWTSLITGCAYHGSYEEALKYFSDMRI 430
N L+ + A ++D A V L+Q+ D +T+LI+ CA G + + F +M
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500
Query: 431 SGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIND 490
+G+ + +++ CA QV F G S +V V
Sbjct: 501 AGVEANVHTFGALIDGCAR------AGQVAKAFGAYGIMRSKNVKPDRV----------- 543
Query: 491 ANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGT--KPDYITFVGLLFAC 548
VF+ ALI C Q+G A +M A PD+IT L+ AC
Sbjct: 544 ---VFN-----------ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 549 SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE---PD 605
++AG + A+ ++ + + Y IK P+ Y ++ + G A ++ D M + PD
Sbjct: 590 ANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 606 ATVWKALLSACRVHGDLELG-ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRK 664
+ AL+ GDL+ E + + + + Y L S A W+ A + +
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 665 LMKSRGIR 672
+KS +R
Sbjct: 709 DIKSIKLR 716
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-10
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 300 NEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFA 347
+ V++N++I G+ ++G +EAL LF +M R IK + +TY +++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 502 DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH 550
DV+T+ LI G + GK +EAL+ +++M RG KP+ T+ L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 400 KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACA 448
DV+++ +LI G G EEALK F++M+ GI P+ S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 32/114 (28%)
Query: 40 NRALVDF-SNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNF 98
N ALVD S G +++A +F++M ++ +WN +IA
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA----------------------- 399
Query: 99 FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRG 152
GY N+G +A E+F +M EG P+ T VL C GL ++G
Sbjct: 400 --------GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 198 KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACA 246
+ V + T+I GY + G +A++ F +M+ G++ N +T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 68 FTWNTMIAAYANSGRLREAKKLFNE------TPFKNFFTWSSLIYGYSN 110
T+NT+I Y G++ EA KLFNE P N +T+S LI G
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP--NVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 375 NALIDMYAKQGNLDCAFMVFNLMQDK----DVISWTSLITGCA 413
N LID Y K+G ++ A +FN M+ + +V +++ LI G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 7e-06
Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 42/281 (14%)
Query: 486 GCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545
+ +A R + + T+ L+ CA + AL+ + G K D + L+
Sbjct: 420 RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479
Query: 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKA------LLDQ 599
C+ +G + F M G++ + +ID R+G++ AKA + +
Sbjct: 480 STCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQV--AKAFGAYGIMRSK 536
Query: 600 MVGEPDATVWKALLSACRVHGDLELGERAANNLFEL----EPM--NAMPYVQLSNMYSTA 653
V +PD V+ AL+SAC G ++ RA + L E+ P+ + + L + A
Sbjct: 537 NV-KPDRVVFNALISACGQSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 654 GKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLI 713
G+ + A V +++ I+ P + NS D L IY +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ---KGDWDFALS--IYDD-------M 640
Query: 714 KEAGYVPDMNF--ALHNVEEEGKEIGLAYHSEKLAVAFGLL 752
K+ G PD F AL + +A H+ L AF +L
Sbjct: 641 KKKGVKPDEVFFSAL---------VDVAGHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 8e-06
Identities = 63/340 (18%), Positives = 129/340 (37%), Gaps = 42/340 (12%)
Query: 118 FELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDM 177
FE+F +M G + +T ++ C+ G Q + F Y I M
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGI----------------M 533
Query: 178 YAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEG--VESNQ 235
+K + PD V + +I+ Q+G +A + +M+ E ++ +
Sbjct: 534 RSK-----------NVKPD---RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 236 FTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLE- 294
T +++ ACA D +V+ I + V + ++ ++ GD D A + +
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 295 YSEID---NEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351
+ +EV +++++ G +A + + + IK+ +Y S++ ++ +
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD----KDVISWTS 407
A ++ I NALI + L A V + M+ + I+++
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 408 LITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSAC 447
L+ + L S + GI P+ V+ I C
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 302 VSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDD 336
V++N++I G + G +EAL LFK+M R I+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 302 VSWNSMIVGFARQGFHKEALSLFKKMHARDI 332
V++NS+I G+ + G +EAL LFK+M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD 537
+T+ LI G + G+ +EAL+ + +M RG +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 504 ITWTALIMGCAQNGKGKEALQFYDQMLARG 533
+T+ +LI G + GK +EAL+ + +M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 201 VAWTTMITGYSQNGYGFKAIECFRDMRVEGV 231
V + ++I+GY + G +A+E F++M+ +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 403 ISWTSLITGCAYHGSYEEALKYFSDMRISGICPD 436
+++ +LI G G EEAL+ F +M+ GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 68 FTWNTMIAAYANSGRLREAKKLFNE 92
T+N++I+ Y +G+L EA +LF E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKE 25
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 403 ISWTSLITGCAYHGSYEEALKYFSDMRISGI 433
+++ SLI+G G EEAL+ F +M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 201 VAWTTMITGYSQNGYGFKAIECFRDMRVEGVESN 234
V + T+I G + G +A+E F++M+ G+E +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 68 FTWNTMIAAYANSGRLREAKKLFNE 92
T+NT+I +GR+ EA +LF E
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKE 25
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 66 DGFTWNTMIAAYANSGRLREAKKLFNE 92
D T+NT+I +GR+ EA +L +E
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 476 NSLVLVYAKCGCINDANRVFDSMHTR----DVITWTALIMGCAQ 515
N+L+ Y K G + +A ++F+ M R +V T++ LI G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 809 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.38 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.37 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.35 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.16 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.02 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.02 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.97 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.97 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.79 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.61 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.59 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.36 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.32 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.28 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.24 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.16 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.02 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.96 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.85 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.82 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.69 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.66 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.47 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.38 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.33 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.29 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.14 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.13 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.09 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.06 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.03 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.02 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.0 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.9 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.68 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.64 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.6 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.51 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.47 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.44 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.41 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.35 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.3 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.29 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.22 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.81 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.72 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.5 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.37 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.2 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.09 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.82 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.81 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.64 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.59 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.14 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.72 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.57 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.45 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.76 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.51 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.34 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.16 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.93 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.86 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.82 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.53 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.4 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.37 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.84 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.67 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.35 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 88.33 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.3 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.01 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 86.81 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.4 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.81 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.45 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.42 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 85.26 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.75 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 84.31 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.93 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.11 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.05 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.98 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.68 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.63 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.52 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.35 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.22 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.89 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.14 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.61 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.55 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.38 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.33 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-150 Score=1328.69 Aligned_cols=783 Identities=36% Similarity=0.652 Sum_probs=753.6
Q ss_pred CcccccccccCCCCC-cchHHHHHHHHhcCCChHHHHHHHHh----cCCCCcchHHHHHHHHHccCChhHHHHHhhhCCC
Q 003584 21 GPARYTHNVGNSVKP-ASDLNRALVDFSNSGEIDEAGQLFEK----MSDRDGFTWNTMIAAYANSGRLREAKKLFNETPF 95 (809)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 95 (809)
+..+|..+...+.+| ..++..++.+|.+.+.++.|..++.. +..++..++|+|+++|+++|+++.|+++|++|++
T Consensus 70 A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~ 149 (857)
T PLN03077 70 ALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE 149 (857)
T ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC
Confidence 333444444444333 44566666666666666666666443 3446778889999999999999999999999999
Q ss_pred CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHH
Q 003584 96 KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLV 175 (809)
Q Consensus 96 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 175 (809)
||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+.++|..+++.|+.||..++|+||
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHH
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGA 255 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 255 (809)
.+|+++|++++|.++|++|+. +|+++||+||.+|+++|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003584 256 QVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID 335 (809)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (809)
++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 003584 336 DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYH 415 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 415 (809)
..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHH
Q 003584 416 GSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVF 495 (809)
Q Consensus 416 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 495 (809)
|+.++|+++|++|.. ++.||..||+++|.+|++.|.++.++++|..+.+.|+.++..++|+|+++|+|+|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH
Q 003584 496 DSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD 575 (809)
Q Consensus 496 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 575 (809)
+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..
T Consensus 548 ~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 548 NSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred Hhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCC
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
+|++|+++|+|+|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+++++++++|++++.|+.|+++|+..|+
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCccccccccchhhh
Q 003584 656 WEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKE 735 (809)
Q Consensus 656 ~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 735 (809)
|++|.++++.|+++|++|+||+|||++++.+|.|++||.+||+.++||..|+++..+|++.||.||+..++ |+++++|+
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~ 785 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKD 785 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 55888999
Q ss_pred hhhhhchHHHHHHHHhhCCCCCCcEEEEcccccCcchhHHHHHHhhhhceEEEEecCCccccccCCcCCCCC
Q 003584 736 IGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGD 807 (809)
Q Consensus 736 ~~~~~hse~la~~~~~~~~~~~~~~~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~ 807 (809)
..+++||||||+|||||+||||+||||+||||||+|||+++||||||++|||||||++|||||+||+|||||
T Consensus 786 ~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 786 DIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-127 Score=1105.48 Aligned_cols=612 Identities=38% Similarity=0.663 Sum_probs=605.9
Q ss_pred CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003584 198 KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEG-VESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSAL 276 (809)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 276 (809)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 678899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHH
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAK 356 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 356 (809)
+++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC
Q 003584 357 SVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPD 436 (809)
Q Consensus 357 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 436 (809)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhc
Q 003584 437 HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQN 516 (809)
Q Consensus 437 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 516 (809)
..||++++.+|++.|.++.|.++|..+.+.|+.||..++|+|+++|+|+|++++|.++|++|.+||+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003584 517 GKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKAL 596 (809)
Q Consensus 517 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 596 (809)
|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|+++|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCc
Q 003584 597 LDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPG 676 (809)
Q Consensus 597 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 676 (809)
+++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|++|.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCccccccccchhhhhhhhhchHHHHHHHHhhCCCC
Q 003584 677 CSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQ 756 (809)
Q Consensus 677 ~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~ 756 (809)
+|||++++.+|.|++||..||+..+||.+|+++..+|++.||.||+.+++||+++++|+..+.+||||||+|||||+|||
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccCcchhHHHHHHhhhhceEEEEecCCccccccCCcCCCCCCC
Q 003584 757 GAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809 (809)
Q Consensus 757 ~~~~~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w 809 (809)
|+||||+||||||+|||+++||||+|+||||||||++|||||+||+|||||||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-85 Score=773.26 Aligned_cols=608 Identities=28% Similarity=0.442 Sum_probs=579.9
Q ss_pred CCCCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH
Q 003584 94 PFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG 173 (809)
Q Consensus 94 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 173 (809)
..++..++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++++|...+.+..|.++|+.+++.|..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 003584 174 LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDF 253 (809)
Q Consensus 174 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 253 (809)
|+++|+++|+++.|.++|++|++ ||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003584 254 GAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIK 333 (809)
Q Consensus 254 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 333 (809)
++++|..+++.|+.||+.++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 003584 334 IDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCA 413 (809)
Q Consensus 334 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 413 (809)
||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHH
Q 003584 414 YHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANR 493 (809)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 493 (809)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC
Q 003584 494 VFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG 573 (809)
Q Consensus 494 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 573 (809)
+|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||..++.+|++.|.++++.+++..+.+. |+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcc
Confidence 99999999999999999999999999999999999986 59999999999999999999999999999999877 99999
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-CCCCccHHhHhhhhhh
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELE-PMNAMPYVQLSNMYST 652 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 652 (809)
..++++|+++|+++|++++|.++|+++ +||..+|++|+.+|.++|+.++|+++|++|.+.+ .+|..+|..++.+|.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 999999999999999999999999999 7999999999999999999999999999998753 2367889999999999
Q ss_pred cCChhHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHH---HHHHHHHHHHHHcCCccCCcc
Q 003584 653 AGKWEDAARVRKLMK-SRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIY---SKIDEIMLLIKEAGYVPDMNF 724 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~l~~~~~~~g~~~~~~~ 724 (809)
.|++++|.++|+.|+ +.|+.|+... .....+.+ +.++++.+.+++++..||...
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~------------------y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~ 659 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKH------------------YACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHH------------------HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHH
Confidence 999999999999999 6787654311 01122222 345678888888899998753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-70 Score=631.41 Aligned_cols=474 Identities=27% Similarity=0.456 Sum_probs=455.4
Q ss_pred CCCcchHHHHHHHHHcCCCchhHHHHHHHHHHcC-CCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH
Q 003584 95 FKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEG-YRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG 173 (809)
Q Consensus 95 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 173 (809)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 003584 174 LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDF 253 (809)
Q Consensus 174 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 253 (809)
|+++|+++|++++|.++|++|+. ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003584 254 GAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIK 333 (809)
Q Consensus 254 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 333 (809)
++++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 003584 334 IDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCA 413 (809)
Q Consensus 334 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 413 (809)
||..||+.++.+|++.|+++.|.++|+.+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH-hCCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 414 YHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK-SGGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
+.|+.++|+++|++|.+.|+.||..||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|++++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 699999999999999999999999999
Q ss_pred HHHHhcC-CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCC
Q 003584 493 RVFDSMH-TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKVYGI 570 (809)
Q Consensus 493 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 570 (809)
++|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~ 559 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GL 559 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 9999997 78889999999999999999999999998865 5665 458888888999999999999999888776 66
Q ss_pred CC
Q 003584 571 KP 572 (809)
Q Consensus 571 ~p 572 (809)
.+
T Consensus 560 ~k 561 (697)
T PLN03081 560 SM 561 (697)
T ss_pred cc
Confidence 53
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=623.84 Aligned_cols=526 Identities=17% Similarity=0.232 Sum_probs=480.7
Q ss_pred HHHhcCC--CCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcch-----HHHHHHHHHcCCCchhHHHHHHHHHHcCCC
Q 003584 58 LFEKMSD--RDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFT-----WSSLIYGYSNYGLDIEAFELFWQMQLEGYR 130 (809)
Q Consensus 58 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 130 (809)
..+.+.. ++...|..+++.|+++|++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|..
T Consensus 359 ~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---- 434 (1060)
T PLN03218 359 AYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---- 434 (1060)
T ss_pred HhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----
Confidence 3444443 567789999999999999999999999999877654 45667789999999999999999975
Q ss_pred CCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC---CCCcccHHHHH
Q 003584 131 PSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD---GKNHVAWTTMI 207 (809)
Q Consensus 131 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li 207 (809)
||..||+.+|++|++.|+++.|.++++.|.+.|+.||..+|+.||.+|+++|++++|.++|++|.. .||.++||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999984 28999999999
Q ss_pred HHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCC
Q 003584 208 TGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILS--SGFEANVYVQSALIDMYAKCGD 285 (809)
Q Consensus 208 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~ 285 (809)
.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred hHHHHHHHhccCC----CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 003584 286 LDSARRLLEYSEI----DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSL 361 (809)
Q Consensus 286 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 361 (809)
+++|.++|+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999874 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCH
Q 003584 362 IVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQ----DKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDH 437 (809)
Q Consensus 362 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 437 (809)
|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999995 589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHH----HhcCCHHHHHHHHHhcCCCCeeechHHHHHH
Q 003584 438 VVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVY----AKCGCINDANRVFDSMHTRDVITWTALIMGC 513 (809)
Q Consensus 438 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 513 (809)
.||++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++ .+++...++...|+.+...+...|+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------ 828 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------ 828 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------
Confidence 999999999999999999999999999999999999999999874 3444444444445443333444444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 003584 514 AQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEA 593 (809)
Q Consensus 514 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 593 (809)
++|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++||+.+++. .++|
T Consensus 829 ------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A 899 (1060)
T PLN03218 829 ------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRA 899 (1060)
T ss_pred ------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHH
Confidence 569999999999999999999999998888888888888888877655 7778889999999988432 4689
Q ss_pred HHHHHhCcC
Q 003584 594 KALLDQMVG 602 (809)
Q Consensus 594 ~~~~~~m~~ 602 (809)
..++++|..
T Consensus 900 ~~l~~em~~ 908 (1060)
T PLN03218 900 FSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHH
Confidence 999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=595.24 Aligned_cols=504 Identities=18% Similarity=0.211 Sum_probs=466.8
Q ss_pred CCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCccc-----HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHH
Q 003584 165 DLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVA-----WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFP 239 (809)
Q Consensus 165 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 239 (809)
.++...+..++..++++|++++|.++|+.|+. ++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 46778899999999999999999999999988 55554 55667789999999999999999974 9999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC----CCCeeeHHHHHHHHHhcC
Q 003584 240 SILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE----IDNEVSWNSMIVGFARQG 315 (809)
Q Consensus 240 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 315 (809)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 589999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH--hccCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003584 316 FHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK--TGFEGYKFVNNALIDMYAKQGNLDCAFMV 393 (809)
Q Consensus 316 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 393 (809)
++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+ .|+.||..+|++|+.+|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 67899999999999999999999999999
Q ss_pred HhhcCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCC
Q 003584 394 FNLMQD----KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGC 469 (809)
Q Consensus 394 f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 469 (809)
|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999986 5779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHhHHHHHHHhcCCHHHHHHHHHhcC----CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003584 470 SSLSVDNSLVLVYAKCGCINDANRVFDSMH----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545 (809)
Q Consensus 470 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 545 (809)
|+..+|++||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 6899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh----hcC-------------------CHHHHHHHHHhCcC
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG----RSG-------------------KLIEAKALLDQMVG 602 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~eA~~~~~~m~~ 602 (809)
.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|++|..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999877 99999999999998743 232 24679999999986
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCc
Q 003584 603 ---EPDATVWKALLSACRVHGDLELGERAANNLFE-LEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPG 676 (809)
Q Consensus 603 ---~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 676 (809)
.||..+|++++.++...+..+.+..+++.+.. -.+.+..+|..|++.+.+. .++|..+++.|...|+.|...
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 59999999999888888888988888877643 3466788999999988432 368999999999999987653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=353.94 Aligned_cols=638 Identities=11% Similarity=0.003 Sum_probs=309.2
Q ss_pred cccCcccccccccCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHHHHhhhCC
Q 003584 18 KIIGPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDR---DGFTWNTMIAAYANSGRLREAKKLFNETP 94 (809)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 94 (809)
...+...|...+...+.+...+..+...+...|++++|...++.+.+. +..........+...|++++|...|+++.
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333444455555544444455555666666666666666666555431 11222222223344555555555555443
Q ss_pred CCC---cchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHH
Q 003584 95 FKN---FFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVV 171 (809)
Q Consensus 95 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 171 (809)
+.+ ...+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 366 (899)
T TIGR02917 289 KSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAAL 366 (899)
T ss_pred HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 211 1122233334444555555555555544421 1112223333344444555555555554444433 2234444
Q ss_pred HHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHH----------------------------------HHHHhhCCC
Q 003584 172 TGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTM----------------------------------ITGYSQNGY 215 (809)
Q Consensus 172 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~l----------------------------------i~~~~~~g~ 215 (809)
+.+...|.+.|++++|.+.|+++... .+...|..+ +..+.+.|+
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 44444555555555555555443220 123334444 444444555
Q ss_pred hHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhc
Q 003584 216 GFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEY 295 (809)
Q Consensus 216 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 295 (809)
+++|+++++++... .+++..++..+...+...|++++|.+.+..+++.. +.+...+..+...+...|++++|.+.|+.
T Consensus 447 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555444432 22334444445555555555555555555554433 23334444455555555555555555544
Q ss_pred cCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchH
Q 003584 296 SEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKF 372 (809)
Q Consensus 296 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 372 (809)
+.. .+..++..+...+.+.|+.++|...|.++...+. .+...+..+...+...|+++.|..+++.+.+.. +.+..
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 602 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPE 602 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHH
Confidence 321 2334445555555555555555555555544321 223334444555555555555555555554432 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhc
Q 003584 373 VNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAE 449 (809)
Q Consensus 373 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 449 (809)
++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+..
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 555555555555555555555554432 234445555555555555555555555554431 2224444445555555
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
.|+++.|.+++..+.+.. +.+..++..+...|.+.|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555554443 3344444555555555555555555555543 2333444445555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCC
Q 003584 528 QMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPD 605 (809)
Q Consensus 528 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~ 605 (809)
++.+.. +.+...+..+...|...|+.++|.++|+.+.+. .+++...+..+..++.+.|+ ++|+++++++.. +.+
T Consensus 761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 555431 233344555555555555555555555555432 22344455555555555555 555555554432 123
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+.+|..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33455555555555555555555555555555555555555555555555555555555553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=349.58 Aligned_cols=644 Identities=14% Similarity=-0.001 Sum_probs=436.9
Q ss_pred ccccccCcccccccccCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCC---CCcchHHHHHHHHHccCChhHHHHHhh
Q 003584 15 CRSKIIGPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSD---RDGFTWNTMIAAYANSGRLREAKKLFN 91 (809)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~ 91 (809)
.+....+...+...+...+.....+..+...+...|+.+.|...|+.... .+..++..+...+...|++++|...|+
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33344455556666665565666777777888999999999999988765 356678888999999999999999999
Q ss_pred hCCCC---CcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcc-cHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCc
Q 003584 92 ETPFK---NFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQY-TLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLN 167 (809)
Q Consensus 92 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 167 (809)
.+.+. +...+......+...|++++|...|+++.+.+ |+.. .+..+...+...|+++.|...+..+++.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 87542 23344444556678899999999999998854 5533 23334456778999999999999998875 446
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 003584 168 AFVVTGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTAC 245 (809)
Q Consensus 168 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 245 (809)
...+..+...+.+.|++++|...++.+... .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISK 407 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 777888899999999999999999877541 456789999999999999999999999987653 22344455566666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHH
Q 003584 246 AAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALS 322 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 322 (809)
...|+.++|...+..+.+... .+......++..|.+.|++++|..+++.+.. .+...|+.+...|...|++++|.+
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 677777777777777666542 2223334444555555555555555544431 233445555555555555555555
Q ss_pred HHHHHHHCCC---------------------------------CCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003584 323 LFKKMHARDI---------------------------------KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG 369 (809)
Q Consensus 323 ~~~~m~~~g~---------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 369 (809)
.|+++.+... +.+..++..+...+...|+.++|...+..+.+.+ +.
T Consensus 487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 5555443321 1123334444444444455555555554444433 23
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHH
Q 003584 370 YKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSA 446 (809)
Q Consensus 370 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 446 (809)
+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+...
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 334445555555555666666555555542 244566666666666666666666666665542 2234445555556
Q ss_pred HhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHH
Q 003584 447 CAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEAL 523 (809)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 523 (809)
+...|+.++|...+..+.+.. +.+...+..++..+.+.|++++|..+++.+.+ .+...|..+...+...|++++|+
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666665543 34455666666666666777777766666652 24455666677777777777787
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-
Q 003584 524 QFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG- 602 (809)
Q Consensus 524 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~- 602 (809)
+.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|+.++|.+.|+++..
T Consensus 724 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 724 QAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 777777774 455566667777788888888888888777653 344567778888888888888888888888764
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 603 -EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 603 -~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
++++.+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566688888888888888 7788888888888888888888888888889999999999988887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=255.45 Aligned_cols=106 Identities=61% Similarity=1.074 Sum_probs=97.5
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCccccccccchhh--------hhhhhhchHHHHH
Q 003584 676 GCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGK--------EIGLAYHSEKLAV 747 (809)
Q Consensus 676 ~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 747 (809)
|+||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999998 455667788999999999998877665 5689999999999
Q ss_pred HHHhhCCCCCCcEEEEccc-ccCcchhHHHHHHhhhhceEEEEecCCcccccc
Q 003584 748 AFGLLTLPQGAPIRIFKNL-RVCGDCHTAMKYISAVYLRHIILRDSNRFHHFK 799 (809)
Q Consensus 748 ~~~~~~~~~~~~~~i~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~ 799 (809)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-24 Score=264.52 Aligned_cols=618 Identities=12% Similarity=0.031 Sum_probs=462.1
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHccCChhHHHHHhhhCCCCCc---chH--------
Q 003584 36 ASDLNRALVDFSNSGEIDEAGQLFEKMSD--R-DGFTWNTMIAAYANSGRLREAKKLFNETPFKNF---FTW-------- 101 (809)
Q Consensus 36 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~-------- 101 (809)
...+...++-+...++.+.|++.+.+... | |+.++..+...+.+.|+.++|.+.+++..+.++ ..+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 34456666778889999999999888764 3 567888889999999999999999998865322 121
Q ss_pred --------HHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHH-HHH-HhhcCCCchHHHHHHHHHHHhCCCCchHHH
Q 003584 102 --------SSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDN-VLR-LCSLKGLLQRGEQFHGYAIKTCFDLNAFVV 171 (809)
Q Consensus 102 --------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 171 (809)
..+...+.+.|++++|+..|+.+.+.. |+...... ... .....++.++|...++.+++.. +.+...+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~ 184 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLR 184 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 223446889999999999999998743 33332211 222 2335689999999999999885 4467788
Q ss_pred HHHHHhhhcCCChhHHHHHhhhCCCCCCc-----ccH-----------------HHHHHHHhhCCChHHHHHHHHHHHHC
Q 003584 172 TGLVDMYAKCKCIFEAEYLFKMFPDGKNH-----VAW-----------------TTMITGYSQNGYGFKAIECFRDMRVE 229 (809)
Q Consensus 172 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~ 229 (809)
..+...+...|+.++|...|+++...+.. ..| ...+..+-.......|...+.++...
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 89999999999999999999987542210 111 11222222223344555666555443
Q ss_pred CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC--CCe---eeH
Q 003584 230 GVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI--DNE---VSW 304 (809)
Q Consensus 230 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~ 304 (809)
...|+... ...-.++...|++++|...+...++.. +.+..++..|...|.+.|++++|...|++... |+. ..|
T Consensus 265 ~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 265 LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 22333221 122345567899999999999999875 45788899999999999999999999987653 221 123
Q ss_pred HHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchH
Q 003584 305 NSM------------IVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKF 372 (809)
Q Consensus 305 ~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 372 (809)
..+ ...+.+.|++++|+..|++..+..+ .+...+..+...+...|++++|.+.++.+++.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 222 3456789999999999999998743 244566678889999999999999999999875 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------------HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC-HhH
Q 003584 373 VNNALIDMYAKQGNLDCAFMVFNLMQDKD------------VISWTSLITGCAYHGSYEEALKYFSDMRISGICPD-HVV 439 (809)
Q Consensus 373 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 439 (809)
.+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~ 497 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWL 497 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 6777777775 467899999998876421 123555677888999999999999999876 454 445
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC----e---------eec
Q 003584 440 VSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD----V---------ITW 506 (809)
Q Consensus 440 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~----~---------~~~ 506 (809)
+..+...+...|+.++|...++.+++.. +.+......+...+.+.|+.++|...++.+.... . ..+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 6677778999999999999999998754 3455555566667788999999999999886321 1 112
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR 586 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 586 (809)
..+...+...|+.++|+.+++. .+++...+..+...+...|+.++|...|+...+. -+.+...+..++.+|..
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 2345678899999999999872 2445567778888999999999999999998853 23356788899999999
Q ss_pred cCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc------cHHhHhhhhhhcCChhH
Q 003584 587 SGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAM------PYVQLSNMYSTAGKWED 658 (809)
Q Consensus 587 ~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~ 658 (809)
.|++++|.+.++..+. .| +..++..+..++...|+.++|.+.++++++..|+++. .+..++.++...|++++
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 9999999999998875 34 4557888899999999999999999999998765543 56667999999999999
Q ss_pred HHHHHHHHHh-CCC
Q 003584 659 AARVRKLMKS-RGI 671 (809)
Q Consensus 659 A~~~~~~m~~-~~~ 671 (809)
|...+++... .|+
T Consensus 730 A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 730 ALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHHHhhcCC
Confidence 9999998753 344
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-24 Score=259.43 Aligned_cols=585 Identities=11% Similarity=0.019 Sum_probs=435.7
Q ss_pred HHHHHHccCChhHHHHHhhhCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHH------------
Q 003584 73 MIAAYANSGRLREAKKLFNETPF---KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLD------------ 137 (809)
Q Consensus 73 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------------ 137 (809)
.++.+-..++.+.|++.++++.. .|+..+..++..+.+.|+.++|...+++..+.. |+...+.
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCc
Confidence 45567778999999999987643 356788889999999999999999999999854 6665432
Q ss_pred -----HHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHH-HHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHH
Q 003584 138 -----NVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVT-GLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITG 209 (809)
Q Consensus 138 -----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~ 209 (809)
.+.+.+...|++++|.+.++.+++... ++..... .+.......|+.++|.+.|+++... .+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 223457788999999999999987653 3322211 1122223468999999999887652 355678889999
Q ss_pred HhhCCChHHHHHHHHHHHHCCCC----------------CCcc---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 003584 210 YSQNGYGFKAIECFRDMRVEGVE----------------SNQF---TFPSILTACAAVSARDFGAQVHGCILSSGFEANV 270 (809)
Q Consensus 210 ~~~~g~~~~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 270 (809)
+.+.|+.++|++.|+++.+.... ++.. .+...+..+........+...+....+....|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999998653210 0000 1111122222222344555555554444323332
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-ccH-------
Q 003584 271 YVQSALIDMYAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDD-FTY------- 339 (809)
Q Consensus 271 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------- 339 (809)
. ...+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..+....... ..+
T Consensus 271 ~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 R-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 2 23446678889999999999987653 46678899999999999999999999999876443221 111
Q ss_pred -----HHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHH
Q 003584 340 -----PSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITG 411 (809)
Q Consensus 340 -----~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 411 (809)
......+...|++++|...++.+++.. +.+...+..|...|...|++++|++.|++..+ .+...+..+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 112345678899999999999999875 45667788899999999999999999999875 345667777777
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCcc--------CHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHH
Q 003584 412 CAYHGSYEEALKYFSDMRISGICP--------DHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYA 483 (809)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 483 (809)
|. .++.++|+.+++.+....... ....+......+...|+.++|.+.++.+++.. +.+..++..+...|.
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 74 467899999988765431100 01223445566778999999999999999876 446777888999999
Q ss_pred hcCCHHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHcc
Q 003584 484 KCGCINDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI---------TFVGLLFACSHA 551 (809)
Q Consensus 484 k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---------t~~~ll~a~~~~ 551 (809)
+.|++++|...|+++. .| +...+..+...+...|+.++|+..++++......++.. .+..+...+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999875 23 44455555556778999999999998865433233322 133456778899
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 003584 552 GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAA 629 (809)
Q Consensus 552 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~ 629 (809)
|+.++|..+++ ..+++...+..+.+.|.+.|++++|++.+++... .| +...+..++..+...|+.++|+..+
T Consensus 587 G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999986 1234556778899999999999999999998885 34 5669999999999999999999999
Q ss_pred HHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 630 NNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 630 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+++++..|+++..+..++.++...|++++|.++++++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999988654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-21 Score=223.80 Aligned_cols=619 Identities=12% Similarity=-0.016 Sum_probs=391.8
Q ss_pred CcccccccccCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCc--chHHHHHHHHHccCChhHHHHHhhhCCC--C
Q 003584 21 GPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDRDG--FTWNTMIAAYANSGRLREAKKLFNETPF--K 96 (809)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~--~ 96 (809)
+...|.+.+...|.....+..+.+.+...|+.++|+..+++..+.|+ ..+..++. ..++.++|..+++++.. |
T Consensus 63 A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La---~i~~~~kA~~~ye~l~~~~P 139 (987)
T PRK09782 63 AIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA---AIPVEVKSVTTVEELLAQQK 139 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH---HhccChhHHHHHHHHHHhCC
Confidence 44445555555555555556666666666666666666666554322 22222222 22666666666666543 2
Q ss_pred -CcchHHHHHHH--------HHcCCCchhHHHHHHHHHHcCCCCCcccHHHH-HHHhhcCCCchHHHHHHHHHHHhCCCC
Q 003584 97 -NFFTWSSLIYG--------YSNYGLDIEAFELFWQMQLEGYRPSQYTLDNV-LRLCSLKGLLQRGEQFHGYAIKTCFDL 166 (809)
Q Consensus 97 -~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~ 166 (809)
+...+..+... |.+.+...+++ + .......|+..+.... .+.+...++++++..++..+.+.+. .
T Consensus 140 ~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l 214 (987)
T PRK09782 140 ACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-L 214 (987)
T ss_pred CChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-C
Confidence 12233333333 44443333333 3 2222222333333333 5666777777777777777777763 2
Q ss_pred chHHHHHHHHhhhc-CCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCC-CCcchHHHHHHH
Q 003584 167 NAFVVTGLVDMYAK-CKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVE-SNQFTFPSILTA 244 (809)
Q Consensus 167 ~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~ 244 (809)
+......|-.+|.. .++ ++|..+++.... .|...+..+...|.+.|+.++|.++++++...-.. |+..++.-++.
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~- 291 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQGIF-TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS- 291 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH-
Confidence 34445555556666 355 666666554333 46667777777777777777777777776543222 44444443332
Q ss_pred HhccCChH-HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHH--HHHhcCChhHH
Q 003584 245 CAAVSARD-FGAQVHGCILSSGFEAN-VYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIV--GFARQGFHKEA 320 (809)
Q Consensus 245 ~~~~~~~~-~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A 320 (809)
+.+... .+..-+.. .+.++ ....-.+++.+.+.++++.|.++.+ ....+. . ..+. +....+...++
T Consensus 292 --r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 292 --KYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEA 361 (987)
T ss_pred --hccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchhHH
Confidence 222221 01100000 00111 1223345788889999998887744 222232 1 2222 22234677778
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHh-c-cCCchHHHHHHHHHHHhcCC---HHHHHHH--
Q 003584 321 LSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKT-G-FEGYKFVNNALIDMYAKQGN---LDCAFMV-- 393 (809)
Q Consensus 321 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-- 393 (809)
...++.|.+... -+......+--.....|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 362 LRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 777777876521 13333333333456788899999999888763 1 12345566678888888776 3333222
Q ss_pred -----------------------HhhcCC---C--CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHH
Q 003584 394 -----------------------FNLMQD---K--DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILS 445 (809)
Q Consensus 394 -----------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 445 (809)
+..... + +...|..+..++.. ++.++|+..+.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 111111 2 55677777777776 7888899988887765 476655444445
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHH---HHHhcCChHHH
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIM---GCAQNGKGKEA 522 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A 522 (809)
++...|+++.|...+..+... +|+...+..+...+.+.|++++|...|+...+.++..++.... .....|++++|
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 556889999999999887554 3444455667788889999999999998887544333333332 33344999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCc
Q 003584 523 LQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 523 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
+..|++..+ +.|+...+..+..++.+.|+.++|...++.... +.| +...+..+...+...|+.++|++.+++..
T Consensus 596 l~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 596 LNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988 467877888899999999999999999998874 455 45677888889999999999999999877
Q ss_pred C-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 602 G-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 602 ~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
. .| ++..+..+..++...|+.++|+..++++++++|++.......+++.....+++.|.+-+++.-..++
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4 35 5568999999999999999999999999999999999999999999999999988887777655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-20 Score=217.48 Aligned_cols=563 Identities=12% Similarity=-0.004 Sum_probs=383.9
Q ss_pred cCChhHHHHHhhhCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHH
Q 003584 80 SGRLREAKKLFNETPF---KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFH 156 (809)
Q Consensus 80 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 156 (809)
.|++++|...|+...+ .+..++..|...|.+.|++++|...+++..+. .|+...|..++... ++.+.+..++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 3777777777776543 23456677777777888888888877777764 36555555544323 6666777777
Q ss_pred HHHHHhCCCCchHHHHHHHHh--------hhcCCChhHHHHHhhhCCCCCCcccHHH-HHHHHhhCCChHHHHHHHHHHH
Q 003584 157 GYAIKTCFDLNAFVVTGLVDM--------YAKCKCIFEAEYLFKMFPDGKNHVAWTT-MITGYSQNGYGFKAIECFRDMR 227 (809)
Q Consensus 157 ~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 227 (809)
+.+++.. +.+..++..+... |.+.+...+|.. .......++...... +...|.+.|++++|++++.++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 7777765 2344445444444 777766666666 322222123333333 4788999999999999999998
Q ss_pred HCCCCCCcchHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC-----CCe
Q 003584 228 VEGVESNQFTFPSILTACAA-VSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI-----DNE 301 (809)
Q Consensus 228 ~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~ 301 (809)
+.+... ..-...+-.++.. .++ +.+..++.. .+..++.+...+.+.|.+.|+.++|.+++++++. |+.
T Consensus 210 k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 875332 3334445455555 355 666666442 3346788888999999999999999999987763 222
Q ss_pred eeHHH------------------------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCC
Q 003584 302 VSWNS------------------------------MIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351 (809)
Q Consensus 302 ~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (809)
.+|-- ++.-+.+.++++-+.++. ...|.......-..+....+.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccccCc
Confidence 22211 134445555555444331 134444432222222234466
Q ss_pred hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----CHhHHHHHHHHHHhcCC---HHHHH
Q 003584 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD-K-----DVISWTSLITGCAYHGS---YEEAL 422 (809)
Q Consensus 352 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~ 422 (809)
..++.+.+..+.+.. +-+....--+.-...+.|+.++|..+|+..-. + +...-+-++..|.+.+. ..++.
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 677777777776652 22444444444557789999999999998765 2 23345577778877766 44444
Q ss_pred HH------------HH----------HHhh-cCCccC---HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHh
Q 003584 423 KY------------FS----------DMRI-SGICPD---HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDN 476 (809)
Q Consensus 423 ~~------------~~----------~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 476 (809)
.+ .. .... .+..|+ ...+..+-..+.. +..++|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 33 11 1111 112233 3444444444444 78888998777776654 4444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCC
Q 003584 477 SLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGL 553 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~ 553 (809)
.+...+...|++++|...|+++. .++...+..+...+.+.|+.++|...|++.++. .|+.. .+..+.......|+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCC
Confidence 44555578999999999999876 345556777788899999999999999999985 35443 33344455667799
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003584 554 AENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANN 631 (809)
Q Consensus 554 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~ 631 (809)
+++|...++... .+.|+...|..+..++.+.|+.++|...+++... .| +...+..+..++...|+.++|+..+++
T Consensus 592 ~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999887 4567888999999999999999999999998875 35 455889999999999999999999999
Q ss_pred HhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 632 LFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 632 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-20 Score=188.61 Aligned_cols=450 Identities=16% Similarity=0.112 Sum_probs=350.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAK 282 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 282 (809)
-..|..-..+.|++++|.+.-...-++. +.+..+...+-..+....+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666778889998888655443332 1222222223333444444544443333333332 3346688889999999
Q ss_pred CCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHhhcCCChHHHHHH
Q 003584 283 CGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSV-LNCFASNIDLNNAKSV 358 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~i 358 (809)
.|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+- -......|++++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999987664 35678999999999999999999999988774 4555443332 2334456888899888
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcc
Q 003584 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRISGICP 435 (809)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 435 (809)
+..+++.. +.-..+|+.|...+-..|++..|+..|++...-| ...|-.|...|...+.+++|+..+.+.... .|
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 88887764 3345678888888999999999999999987643 357888888999999999999999887754 56
Q ss_pred C-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CC-CeeechHHHH
Q 003584 436 D-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TR-DVITWTALIM 511 (809)
Q Consensus 436 ~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~ 511 (809)
+ .+.+..+...|-..|.++.|...+++.+... +.-...|+.|..++-..|++.+|...+++.. .| ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 5 4456666666788899999999999988765 3446788999999999999999999999876 33 4567889999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCC
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGK 589 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~ 589 (809)
.|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.. .+.|+. ..|+.|...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999988 67776 489999999999999999999998876 788875 789999999999999
Q ss_pred HHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 590 LIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 590 ~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.++|...+.+... .|. +...+.|.+.|...|++.+|+..|+.+++++|+.+.+|..++.++---.+|.+=.+.+++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999988774 454 348999999999999999999999999999999999999999888877788774444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=184.03 Aligned_cols=418 Identities=13% Similarity=0.120 Sum_probs=334.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCh
Q 003584 241 ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE---IDNEVSWNSMIVGFARQGFH 317 (809)
Q Consensus 241 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 317 (809)
+..-..+.|++++|++.-..+-+.. +.+....-.+-..+....+.+....--.... ..-..+|..+...+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3444456688888877555443332 2233333334455666666665443322222 22346788999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHH-HHHHHHHHHhcCCHHHHHHHHhh
Q 003584 318 KEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFV-NNALIDMYAKQGNLDCAFMVFNL 396 (809)
Q Consensus 318 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~ 396 (809)
++|+.+++.|.+...+ ....|..+..++...|+.+.|.+.+...++.+ |+... .+-+-......|++++|...+.+
T Consensus 133 ~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 133 QDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999986322 45678999999999999999999999988764 54443 34455556668999999999988
Q ss_pred cCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCCh
Q 003584 397 MQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSL 472 (809)
Q Consensus 397 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 472 (809)
..+.+ .+.|+.|...+-.+|+..+|+..|++.... .|+ ...|..+-..+...+.++.|...+..+.... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 76532 478999999999999999999999999864 565 3467777778888888888888887776544 4456
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcC--CCC-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMH--TRD-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFAC 548 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~ 548 (809)
.++..|.-.|-..|.+|.|...+++.. +|+ ...|+.|..++-..|+..+|...|.+.+. +.|+. .+.+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 677778888999999999999999887 444 46899999999999999999999999998 56776 4889999999
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhHH
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLELG 625 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~A 625 (809)
...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+.-+++... +|+.. .++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999998766 45565 46788999999999999999999998774 67654 999999999999999999
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.+.+.+++..+|.-+.++..|+.+|..+|+..+|+.-++......
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999887543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-16 Score=173.37 Aligned_cols=618 Identities=13% Similarity=0.064 Sum_probs=429.1
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHhcCC--------CCc---chHHHHHHHHHcc-----------CChhHHHHHh
Q 003584 33 VKPASDLNRALVDFSNSGEIDEAGQLFEKMSD--------RDG---FTWNTMIAAYANS-----------GRLREAKKLF 90 (809)
Q Consensus 33 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~---~~~~~li~~~~~~-----------g~~~~A~~~f 90 (809)
..|-..|..+...|...|..+++..+++.+.. ++. ..++.|...|+.. ..+..|..+|
T Consensus 38 ~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~ 117 (1018)
T KOG2002|consen 38 QAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLF 117 (1018)
T ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Confidence 44455677788889999999999999999872 221 1233333333222 1244555666
Q ss_pred hhCCCCCcchHHHHH---HHHHcCCC--chhHHHHHHHHHHcCCCCCcccHHHHHHHhh--cCCCchHHHHHHHHHHHhC
Q 003584 91 NETPFKNFFTWSSLI---YGYSNYGL--DIEAFELFWQMQLEGYRPSQYTLDNVLRLCS--LKGLLQRGEQFHGYAIKTC 163 (809)
Q Consensus 91 ~~~~~~~~~~~~~li---~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g 163 (809)
+....-+...+..++ ..|...|. .+.|...|....+.. |+.. ...+.++|. ..+++..+..++..++...
T Consensus 118 ~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~in 194 (1018)
T KOG2002|consen 118 DLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS--PDNI-LALLGKARIAYNKKDYRGALKYYKKALRIN 194 (1018)
T ss_pred hHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhccccHHHHHHHHHHHHhcC
Confidence 543332222222221 12333343 488999998888743 4433 233456665 5679999999999977664
Q ss_pred --CCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHh------hCCChHHHHHHHHHHHHCCCCCCc
Q 003584 164 --FDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYS------QNGYGFKAIECFRDMRVEGVESNQ 235 (809)
Q Consensus 164 --~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~ 235 (809)
..+|+.+. +-..+.++|+.+.|...|.+..+ -|+.+-++++.... ....+..++.++...-... .-|+
T Consensus 195 p~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralq-Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP 270 (1018)
T KOG2002|consen 195 PACKADVRIG--IGHCFWKLGMSEKALLAFERALQ-LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENP 270 (1018)
T ss_pred cccCCCccch--hhhHHHhccchhhHHHHHHHHHh-cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCc
Confidence 35565543 33567799999999999998877 66655555553221 1223455666665554332 3466
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChHHHHHHHhccCC--CC--eeeHHHHHH
Q 003584 236 FTFPSILTACAAVSARDFGAQVHGCILSSGFEAN--VYVQSALIDMYAKCGDLDSARRLLEYSEI--DN--EVSWNSMIV 309 (809)
Q Consensus 236 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~ 309 (809)
+..+.|.+-+.-.|+++.+..+...++....... ...|--+..+|-..|++++|...|..... +| +..+--+..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 7788888889999999999999999988763222 23467789999999999999999966543 22 344566888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHhhcCC----ChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhc
Q 003584 310 GFARQGFHKEALSLFKKMHARDIKID-DFTYPSVLNCFASNI----DLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQ 384 (809)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 384 (809)
.|.+.|+.+.+...|+...+. .|| ..|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|...
T Consensus 351 m~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 999999999999999999876 344 455555555555554 4566666666666554 56677777777777655
Q ss_pred CCH------HHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCccCH-----hH-HHHHHHHHh
Q 003584 385 GNL------DCAFMVFNLM-QDKDVISWTSLITGCAYHGSYEEALKYFSDMRIS---GICPDH-----VV-VSSILSACA 448 (809)
Q Consensus 385 g~~------~~A~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t-~~~ll~a~~ 448 (809)
.-+ ..|..++..- ....+...|.+...+...|++++|...|.+.... ...+|. .| --.+.....
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 443 3344333322 2356778899999999999999999999988764 223333 22 222334455
Q ss_pred cccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhc-------CCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCC
Q 003584 449 ELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKC-------GCINDANRVFDSMH---TRDVITWTALIMGCAQNGK 518 (809)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 518 (809)
..++.+.|.+.+..+++... ..|++|.+. +...+|...+.... +.|+..|+-+...+.....
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHP--------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCc--------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 67799999999999988652 345555554 56678888888776 4567778888878888888
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 003584 519 GKEALQFYDQMLARG-TKPDYITFVGLLFACSH------------AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG 585 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 585 (809)
+..|.+-|....+.- ..+|..+..+|.+.|.+ .+..++|+++|....+ .-+.|...-+.+.-.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 888888777766532 34677888888876643 2356778888877664 23346677778888999
Q ss_pred hcCCHHHHHHHHHhCcCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCCccHHhHhhhhhhcCChhHHHH
Q 003584 586 RSGKLIEAKALLDQMVGE--PDATVWKALLSACRVHGDLELGERAANNLFEL--EPMNAMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
..|++.+|.++|.+.... .+..+|-.+...|...|++..|+++|+..+.. ..+++.....|+.++...|+|.+|.+
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999988752 35678999999999999999999999988764 34577888999999999999999999
Q ss_pred HHHHHHhCC
Q 003584 662 VRKLMKSRG 670 (809)
Q Consensus 662 ~~~~m~~~~ 670 (809)
.........
T Consensus 738 ~ll~a~~~~ 746 (1018)
T KOG2002|consen 738 ALLKARHLA 746 (1018)
T ss_pred HHHHHHHhC
Confidence 988776553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-17 Score=185.12 Aligned_cols=418 Identities=13% Similarity=0.031 Sum_probs=254.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAK 282 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 282 (809)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44555667778888888888887765 35666667777777777777777777777777664 3345566667777777
Q ss_pred CCChHHHHHHHhccCCCCe---eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHH
Q 003584 283 CGDLDSARRLLEYSEIDNE---VSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVH 359 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 359 (809)
.|++++|..-|......+. .....++..+.. ..+.....+..+.. .++......+ ..+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~------------ 268 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYL------------ 268 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHH------------
Confidence 7777777766543321111 111111111111 11222222222211 1111111111 1111
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCH---hHHHHHHHH---HHhcCCHHHHHHHHHHHhhcC-
Q 003584 360 SLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDV---ISWTSLITG---CAYHGSYEEALKYFSDMRISG- 432 (809)
Q Consensus 360 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g- 432 (809)
.....+.+..-++...+.+. ..+..+... ....+++++|++.|++..+.+
T Consensus 269 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 269 -----------------------QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred -----------------------HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 00000000000110000000 000000000 012345666666666665543
Q ss_pred CccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechH
Q 003584 433 ICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTA 508 (809)
Q Consensus 433 ~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~ 508 (809)
..|+ ...+..+...+...|++++|...+..+++.. +.....+..+...|...|++++|...|++.. ..+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2232 2234444444555666666666666665543 2334456667777888888888888888765 235667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS 587 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 587 (809)
+...|...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|...|+...+. .+.+...|..+..+|...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 888889999999999999998884 554 456777888888999999999999988753 233467888889999999
Q ss_pred CCHHHHHHHHHhCcC-CCCH-H-------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhH
Q 003584 588 GKLIEAKALLDQMVG-EPDA-T-------VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWED 658 (809)
Q Consensus 588 g~~~eA~~~~~~m~~-~p~~-~-------~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (809)
|++++|.+.|++... .|+. . .++..+..+...|++++|+..++++++++|++...+..++.+|...|++++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 999999999988663 2321 1 122222334456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003584 659 AARVRKLMKSR 669 (809)
Q Consensus 659 A~~~~~~m~~~ 669 (809)
|.+.+++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-18 Score=183.66 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=194.8
Q ss_pred HhcCCHHHHHHHHhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC---HhHHHHHHHHHhcccchhH
Q 003584 382 AKQGNLDCAFMVFNLMQDK---DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPD---HVVVSSILSACAELTVLEF 455 (809)
Q Consensus 382 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~ 455 (809)
...|++++|...|.++.+. +..+|..+...|.+.|++++|..+++.+...+..++ ..++..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3445555555555554431 233445555555555555555555555544321111 1233444445555555555
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe--------eechHHHHHHHhcCChHHHHHHHH
Q 003584 456 GQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDV--------ITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 456 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+. ..|..+...+...|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554432 33455666677777777777777777777653211 134556667788899999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-C
Q 003584 528 QMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG--PDHYACMIDLLGRSGKLIEAKALLDQMVG-E 603 (809)
Q Consensus 528 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~ 603 (809)
++.+. .|+ ..++..+...+.+.|++++|.++++.+.+. .|+ ...+..++.+|.+.|++++|...++++.. .
T Consensus 205 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 205 KALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88874 344 446777788888899999999999888753 333 45678888999999999999999988775 5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhh---cCChhHHHHHHHHHHhCCCccCCc
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYST---AGKWEDAARVRKLMKSRGIRKEPG 676 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 676 (809)
|+...+..++..+...|+.++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777788899999999999999999999999997764 4444444443 569999999999999999988886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-18 Score=183.38 Aligned_cols=303 Identities=14% Similarity=0.045 Sum_probs=186.8
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHH
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEAN---VYVQSALIDM 279 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~ 279 (809)
+......+...|++++|++.|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3333445677889999999999998753 22344677777778888888888888888877542221 2456777788
Q ss_pred HHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHH
Q 003584 280 YAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAK 356 (809)
Q Consensus 280 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 356 (809)
|.+.|++++|..+|+++.. .+..+++.++..+.+.|++++|.+.++++.+.+..++...
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------ 178 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------ 178 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------
Confidence 8888888888888877654 3455677777788888888888888887776543221110
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 003584 357 SVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGI 433 (809)
Q Consensus 357 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 433 (809)
....+..+...+.+.|++++|...|+++.+ .+...+..+...|.+.|++++|.++|+++.+.+.
T Consensus 179 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 179 -------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred -------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 011233455556666777777777766543 2344666667777777777777777777765431
Q ss_pred ccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHH
Q 003584 434 CPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIM 511 (809)
Q Consensus 434 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~ 511 (809)
.+...++..+..++...|+.++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 1112344445555555555555555555544432 333334555666666666666666665544 355555555555
Q ss_pred HHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 003584 512 GCAQ---NGKGKEALQFYDQMLARGTKPDYI 539 (809)
Q Consensus 512 ~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 539 (809)
.+.. +|+.++++.+|++|.+.+++|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5443 345666666666666655555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-16 Score=178.10 Aligned_cols=368 Identities=11% Similarity=-0.008 Sum_probs=284.0
Q ss_pred HhCCChHHHHHHHhccCC------CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHH
Q 003584 281 AKCGDLDSARRLLEYSEI------DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNN 354 (809)
Q Consensus 281 ~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 354 (809)
.+..+++.-.-+|..-++ .+..-...++..+.+.|++++|+.+++......+.+.. .+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHH
Confidence 355566666666655443 13334556778888999999999999999887555433 34445566667999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003584 355 AKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRIS 431 (809)
Q Consensus 355 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 431 (809)
|.+.++.+.+.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++++...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998875 55667788889999999999999999998765 35678889999999999999999999988765
Q ss_pred CCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechH
Q 003584 432 GICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTA 508 (809)
Q Consensus 432 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~ 508 (809)
. |+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3 333332223345778899999999999887765444455555667888999999999999998763 35567888
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHH
Q 003584 509 LIMGCAQNGKGKE----ALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMID 582 (809)
Q Consensus 509 li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 582 (809)
+...|...|++++ |+..|++..+. .|+. ..+..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 8999999999986 89999999984 5654 58888999999999999999999988753 454 456777889
Q ss_pred HHhhcCCHHHHHHHHHhCcC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 583 LLGRSGKLIEAKALLDQMVG-EPDATV-WKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 583 ~~~~~g~~~eA~~~~~~m~~-~p~~~~-~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
+|.+.|++++|.+.++++.. .|+... +..+..++...|+.++|+..++++++..|++. ...+++|.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~ 394 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGL 394 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHH
Confidence 99999999999999998874 466544 44457788999999999999999999999864 24455666
Q ss_pred HHHHHHHhC
Q 003584 661 RVRKLMKSR 669 (809)
Q Consensus 661 ~~~~~m~~~ 669 (809)
..+....+.
T Consensus 395 ~~~~~~~~~ 403 (656)
T PRK15174 395 LALDGQISA 403 (656)
T ss_pred HHHHHHHHh
Confidence 666665543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-15 Score=161.08 Aligned_cols=576 Identities=15% Similarity=0.059 Sum_probs=401.1
Q ss_pred hhHHHHHhhhCCCCCcc-hHHHHHHHH--HcCCCchhHHHHHHHHHHc--CCCCCcccHHHHHHHhhcCCCchHHHHHHH
Q 003584 83 LREAKKLFNETPFKNFF-TWSSLIYGY--SNYGLDIEAFELFWQMQLE--GYRPSQYTLDNVLRLCSLKGLLQRGEQFHG 157 (809)
Q Consensus 83 ~~~A~~~f~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 157 (809)
++.|.+.|......++. .--.|..|+ ...+++..|+.+|...... ..+||... .+-..+.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 58898888876543221 112233333 4578999999999997653 23444432 22244568899999999999
Q ss_pred HHHHhCCCCchHHHHHHHHhhh---c---CCChhHHHHHhhhCCC--CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHC
Q 003584 158 YAIKTCFDLNAFVVTGLVDMYA---K---CKCIFEAEYLFKMFPD--GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVE 229 (809)
Q Consensus 158 ~~~~~g~~~~~~~~~~li~~y~---~---~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 229 (809)
.+++... ...++++..+. . ...+..+..++...-. +.|++..|.|.+.|.-.|+++.+..+...+...
T Consensus 224 ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 224 RALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9887652 33333332221 1 2234555555543321 268899999999999999999999999988764
Q ss_pred CCC--CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCC---CeeeH
Q 003584 230 GVE--SNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEID---NEVSW 304 (809)
Q Consensus 230 g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~ 304 (809)
... .-...|-.+-+++-..|++++|.+.|-+..+..-..-+..+-.|..+|.+.|+++.|...|+.+... +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1234577888899999999999999988887653322455667899999999999999999987643 34455
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHH----HHHhccCCchHHHHH
Q 003584 305 NSMIVGFARQG----FHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSL----IVKTGFEGYKFVNNA 376 (809)
Q Consensus 305 ~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~ 376 (809)
..|...|+..+ ..+.|..++.+..+.- .-|...|..+...+-. ++.......+.. +...+-.+.+.+.|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 56666666665 4466666666665542 2244455555444443 444444555544 445666788889999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-------CH------hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHH
Q 003584 377 LIDMYAKQGNLDCAFMVFNLMQDK-------DV------ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSI 443 (809)
Q Consensus 377 li~~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 443 (809)
+...+...|++++|...|+..... |. .+-..+...+-..++.+.|.+.|....+. .|.-++-..-
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999876532 22 12223445555677899999999999876 4654433222
Q ss_pred HH-HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCeeechHHHHHHHh--
Q 003584 444 LS-ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH-----TRDVITWTALIMGCAQ-- 515 (809)
Q Consensus 444 l~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~-- 515 (809)
+. .....+...++...+..+.... ..++.+++-+.+.|.+...+..|.+-|+.+. .+|..+.-+|.+.|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 22 2223467778888887777644 4566677777779999999988888666554 2355554455554432
Q ss_pred ----------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 003584 516 ----------NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG 585 (809)
Q Consensus 516 ----------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 585 (809)
.+..++|+++|.+.+... +-|...-+.+.-.++..|++.+|..+|....+.. .....+|-.+...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHH
Confidence 345788999999988752 4456677888888999999999999999988752 234456888899999
Q ss_pred hcCCHHHHHHHHHhCcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhh-----------
Q 003584 586 RSGKLIEAKALLDQMVG----EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMY----------- 650 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~----------- 650 (809)
.+|++-.|+++|+.... +.+..+.+-|..++...|.+.+|.+.+..+..+.|.++..-..++-+.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~ 771 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLE 771 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcc
Confidence 99999999999987764 356778999999999999999999999999999999988666555433
Q ss_pred --------hhcCChhHHHHHHHHHHhCCCc
Q 003584 651 --------STAGKWEDAARVRKLMKSRGIR 672 (809)
Q Consensus 651 --------~~~g~~~~A~~~~~~m~~~~~~ 672 (809)
...+..++|.++|..|...+-+
T Consensus 772 k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 772 KRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3345667888888888776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-16 Score=178.84 Aligned_cols=391 Identities=11% Similarity=0.015 Sum_probs=178.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHH
Q 003584 247 AVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE---IDNEVSWNSMIVGFARQGFHKEALSL 323 (809)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (809)
..|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..++..+...|++++|+..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344444444444333311 2233344455555555555555555554421 22333444455555555555555555
Q ss_pred HHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHh
Q 003584 324 FKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVI 403 (809)
Q Consensus 324 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 403 (809)
+++..+.. |+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++.+.|..++|...++.... ++.
T Consensus 106 l~~~l~~~--P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 106 AKQLVSGA--PDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 55555442 221114444445555555555555555555543 23444445566667777777777777776665 211
Q ss_pred --------HHHHHHHHH-----HhcCCH---HHHHHHHHHHhhc-CCccCHh-HHHH----HHHHHhcccchhHHHHHHH
Q 003584 404 --------SWTSLITGC-----AYHGSY---EEALKYFSDMRIS-GICPDHV-VVSS----ILSACAELTVLEFGQQVHA 461 (809)
Q Consensus 404 --------~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~a~~~~~~~~~a~~~~~ 461 (809)
....++..+ ...+++ ++|++.++.+.+. ...|+.. .+.. .+.++...++.++|...++
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111 112223 5666666666643 1222221 1110 0122233344444554444
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe-------eechHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003584 462 VFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDV-------ITWTALIMGCAQNGKGKEALQFYDQMLARGT 534 (809)
Q Consensus 462 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 534 (809)
.+.+.+.+........+...|...|++++|...|+++.+.+. ..+..+..++...|++++|+.+++++...
T Consensus 262 ~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-- 339 (765)
T PRK10049 262 RLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-- 339 (765)
T ss_pred HhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--
Confidence 444433110111111123344444555555544444431110 11222333444444555555444444432
Q ss_pred CCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHH
Q 003584 535 KPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPG---PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATV 608 (809)
Q Consensus 535 ~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~ 608 (809)
.|... .+. ...-.|+ ...+..++.++...|++++|++.++++.. +.+...
T Consensus 340 ~P~~~~~~~------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 340 SPPFLRLYG------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred CCceEeecC------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 11000 000 0001122 12334455555566666666666665543 223345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 609 WKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 609 ~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+..+...+...|+.++|++.++++++++|++...+..++..+...|+|++|..+++.+.+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666665544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-15 Score=175.73 Aligned_cols=371 Identities=13% Similarity=0.058 Sum_probs=253.9
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHH
Q 003584 268 ANVYVQSALIDMYAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID-DFTYPSVL 343 (809)
Q Consensus 268 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 343 (809)
.+.....-.+......|+.++|.+++..... .+...+..+...+...|++++|..+|++..+. .|+ ......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444555566777888999999999987653 23345888888999999999999999998775 343 34456667
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHH
Q 003584 344 NCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEE 420 (809)
Q Consensus 344 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 420 (809)
..+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ .+...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 77888899999999999888773 44555 77888888889999999999988765 255566777778888888888
Q ss_pred HHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCH---HHHHHHHHh
Q 003584 421 ALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCI---NDANRVFDS 497 (809)
Q Consensus 421 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~---~~A~~~~~~ 497 (809)
|++.++.... .|+.... +.. ..+ ....+. .+...+...+++ ++|.+.++.
T Consensus 169 Al~~l~~~~~---~p~~~~~---l~~-------~~~----~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRD---LEA-------DAA----AELVRL----------SFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHHHH---HHH-------HHH----HHHHHh----------hcccccChhHHHHHHHHHHHHHHH
Confidence 8888876653 3431000 000 000 000000 000111122223 556655555
Q ss_pred cC---CCCeeechH-------HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 498 MH---TRDVITWTA-------LIMGCAQNGKGKEALQFYDQMLARGTK-PDYITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 498 ~~---~~~~~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
+. ..++..... .+..+...|++++|+..|+++.+.+-+ |+.. ...+..++...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 54 112211111 133445668888888888888876522 3322 22246678888888888888887764
Q ss_pred hhCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-C-------------C---HHHHHHHHHHHHhcCChhHHHH
Q 003584 567 VYGIKP--GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-P-------------D---ATVWKALLSACRVHGDLELGER 627 (809)
Q Consensus 567 ~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p-------------~---~~~~~~ll~a~~~~g~~~~A~~ 627 (809)
.....+ ....+..|..++...|++++|.+.++++... | + ...+..+...+...|+.++|+.
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 311111 1345666677778888888888888777642 2 2 1245667788999999999999
Q ss_pred HHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 628 AANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 628 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++++++..|+++..+..++.++...|+.++|.+.+++..+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999988754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-15 Score=169.77 Aligned_cols=441 Identities=11% Similarity=-0.009 Sum_probs=253.4
Q ss_pred HHHHHHhhhcCCChhHHHHHhhhCCC-CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHhcc
Q 003584 171 VTGLVDMYAKCKCIFEAEYLFKMFPD-GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESN-QFTFPSILTACAAV 248 (809)
Q Consensus 171 ~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~ 248 (809)
+..+...|.+.|++++|...|++... .|+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 33455667778888888888876433 256667778888888888888888888887764 343 44667777778888
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003584 249 SARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMH 328 (809)
Q Consensus 249 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 328 (809)
|++++|..-+..+...+-..+... ..++.-+.+......+...++.-+ .+..++..+.. |...........-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 888888877766555432222221 112221111111233444443322 23334443333 322222222221111111
Q ss_pred HCCCCCCc-ccHHHHHHH---hhcCCChHHHHHHHHHHHHhc-c-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C
Q 003584 329 ARDIKIDD-FTYPSVLNC---FASNIDLNNAKSVHSLIVKTG-F-EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD--K 400 (809)
Q Consensus 329 ~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~i~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~ 400 (809)
+ ..|+. ..+..+... ....+.+++|.+.++.+++.+ . +.....++.+...|...|++++|...|+...+ |
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 11110 001000000 012234455555555554433 1 12223344444444445555555555544432 1
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHH
Q 003584 401 -DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLV 479 (809)
Q Consensus 401 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 479 (809)
+..+|..+...+...|++++|+..|++ +++.. +.+..++..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~-----------------------------------al~~~-p~~~~~~~~lg 406 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDK-----------------------------------ALKLN-SEDPDIYYHRA 406 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------------------HHHhC-CCCHHHHHHHH
Confidence 223444444444444555555544444 44432 33455666677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 003584 480 LVYAKCGCINDANRVFDSMHT--R-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAE 555 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 555 (809)
..|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++.+.. .|+ ...+..+..++...|+++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 778888888888888887752 3 4556777788888889999999999988874 454 567788888888899999
Q ss_pred HHHHHHHHhHHhhCCCCCh--------HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHH
Q 003584 556 NARWYFESMDKVYGIKPGP--------DHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELG 625 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~--------~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A 625 (809)
+|...|+...+ +.|+. ..++.....+...|++++|.+++++... .|+ ...+..+...+...|++++|
T Consensus 485 ~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 485 EAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999888764 33321 1122222334456999999999988653 454 44788999999999999999
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+..+++++++.+.....+ ....+.+|.++....+
T Consensus 562 i~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 562 LKLFERAAELARTEGELV--------QAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHH
Confidence 999999999877543321 2234445555544444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-15 Score=170.21 Aligned_cols=326 Identities=13% Similarity=0.003 Sum_probs=265.9
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHH
Q 003584 336 DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGC 412 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 412 (809)
..-...++..+.+.|+++.|..++..++.....+ ......++......|++++|...|+.+.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667788899999999999999998876444 34445555667789999999999999875 3567888899999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHH
Q 003584 413 AYHGSYEEALKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDA 491 (809)
Q Consensus 413 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 491 (809)
.+.|++++|+..|+++.+. .|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875 454 5566777888999999999999999887765333 3333333 347889999999
Q ss_pred HHHHHhcCCCC----eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHH----HHHHHH
Q 003584 492 NRVFDSMHTRD----VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAEN----ARWYFE 562 (809)
Q Consensus 492 ~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~----a~~~~~ 562 (809)
...++.+.+.+ ...+..+...+...|++++|+..|+++... .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999876432 233445567888999999999999999985 454 4577788899999999986 789998
Q ss_pred HhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 563 SMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 563 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
...+ +.| +...+..+..++.+.|++++|...+++... .|+ ..++..+..++...|++++|+..++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8874 445 457888999999999999999999998775 354 5588889999999999999999999999999998
Q ss_pred CccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 640 AMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
+..+..++.++...|++++|...+++..+...
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 87777788999999999999999999876643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-14 Score=159.76 Aligned_cols=423 Identities=12% Similarity=0.025 Sum_probs=233.4
Q ss_pred HHhhCCChHHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChH
Q 003584 209 GYSQNGYGFKAIECFRDMRVEGVESNQF-TFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLD 287 (809)
Q Consensus 209 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 287 (809)
...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...++..+.. -........++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 457899999999999999865 45542 2227777777889999999888888711 1222333334466888889999
Q ss_pred HHHHHHhccCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH
Q 003584 288 SARRLLEYSEID---NEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364 (809)
Q Consensus 288 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 364 (809)
+|..+|+++... |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999887643 3455667778888889999999999888765 45555554444444445556558888888888
Q ss_pred hccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CHhHHHHH----HHHHHh---------cCC---HHHHHHHHHH
Q 003584 365 TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK-DVISWTSL----ITGCAY---------HGS---YEEALKYFSD 427 (809)
Q Consensus 365 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~l----i~~~~~---------~g~---~~~A~~~~~~ 427 (809)
.. +.+...+..++....+.|-...|.++..+-++- +...+.-+ +.-.++ ..+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 556777788888888888888888887776541 11111110 111111 111 1223333333
Q ss_pred Hhhc-CCccCH-hHH----HHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003584 428 MRIS-GICPDH-VVV----SSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR 501 (809)
Q Consensus 428 m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 501 (809)
+... +-.|.. .-| .--+-++...++..++.+.++.+...+.+....+--++
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~----------------------- 333 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA----------------------- 333 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH-----------------------
Confidence 3221 111211 111 11122333444444444444444444433333344444
Q ss_pred CeeechHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC-------
Q 003584 502 DVITWTALIMGCAQNGKGKEALQFYDQMLARG-----TKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG------- 569 (809)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------- 569 (809)
.++|...+++++|+.+|+++.... ..++......|..++...+++++|..+++.+.+...
T Consensus 334 --------adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 334 --------ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred --------HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 444555555555555555544321 011122234455555555555555555555543100
Q ss_pred ---CCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 570 ---IKPGP---DHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 570 ---~~p~~---~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
-.|+. ..+..++..+...|++.+|++.++++.. +.|...+..+...+...|+...|++.++.+..++|++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 01111 2233344555555556666555555543 234445555555555566666666555555555555555
Q ss_pred cHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+...++..+...|+|.+|..+.+...+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555555555555666655555554443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-13 Score=157.74 Aligned_cols=439 Identities=10% Similarity=0.027 Sum_probs=304.3
Q ss_pred HhhhcCCChhHHHHHhhhCCCC-CCc-ccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHH---HHHHhccCC
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDG-KNH-VAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSI---LTACAAVSA 250 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~ 250 (809)
-...+.|+++.|...|++.... |+. .....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3467899999999999987751 332 123488888999999999999999987 4444433333 446778899
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHh--cCChhHHHHHHHHHH
Q 003584 251 RDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFAR--QGFHKEALSLFKKMH 328 (809)
Q Consensus 251 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 328 (809)
++.|.++++.+++.. +.+..++..|+..|...++.++|...++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999987 44577788889999999999999999999886555443334445544 566666999999999
Q ss_pred HCCCCC-CcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHH------HHHHHHH---HH--hcCC---HHHHHHH
Q 003584 329 ARDIKI-DDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFV------NNALIDM---YA--KQGN---LDCAFMV 393 (809)
Q Consensus 329 ~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~------~~~li~~---y~--~~g~---~~~A~~~ 393 (809)
+.. | +...+.....++.+.|-...|.++...-... +.+.... ...++.. .. ...+ .+.|+.-
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 874 4 4555677888899999988888776652211 1111110 0111110 00 1112 3445555
Q ss_pred HhhcCC-----CCH-h----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHH
Q 003584 394 FNLMQD-----KDV-I----SWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVF 463 (809)
Q Consensus 394 f~~~~~-----~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 463 (809)
++.+.. |.. . ..--.+.++...|++.++++.|+.|...|.+....+-..+..+|...+.+++|..++..+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 555433 211 1 223456688899999999999999999987756668888999999999999999999988
Q ss_pred HHhCC-----CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003584 464 LKSGG-----CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538 (809)
Q Consensus 464 ~~~g~-----~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 538 (809)
..... +++......|.-+|...+++++|..+++++.+..+.-++. + |... ....||-
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~----~---~~~~-----------~~pn~d~ 415 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV----Y---GLPG-----------KEPNDDW 415 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec----c---CCCC-----------CCCCccH
Confidence 76432 2233334566666777777777777777665321100000 0 0000 0123344
Q ss_pred HH-HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHH
Q 003584 539 IT-FVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSA 615 (809)
Q Consensus 539 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a 615 (809)
.. +..++..+.-.|++.+|.+.++.+.. .-+-|......+.+++...|++.+|.+.++.... .|+ ..+...++.+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 33 33455667888999999999988864 3344677888899999999999999999977654 354 4477788888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
+...|++++|..+.+++++..|+++.+
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 888899999999999999999988754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-13 Score=133.35 Aligned_cols=444 Identities=16% Similarity=0.132 Sum_probs=273.9
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhh--cCCCchHHH-HHHHHHHHhCCCCchHHHHHHH
Q 003584 99 FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCS--LKGLLQRGE-QFHGYAIKTCFDLNAFVVTGLV 175 (809)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li 175 (809)
.+=|.|+.. ...|...++.-+|++|...|+..+...-..|++..+ ....+.-++ +-+-.+.+.|-. +..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 455666554 456888999999999999998877776666665433 222222111 111122222211 11222
Q ss_pred HhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHH
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGA 255 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 255 (809)
|.|.+.+ -+|+..|. +..++..||.|+++-...+.|.++|++-.....+.+..+|+.+|.+.+- ..++
T Consensus 191 ----K~G~vAd--L~~E~~PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETLPK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred ----ccccHHH--HHHhhcCC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3455444 66777665 6789999999999999999999999999988889999999999987653 3348
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003584 256 QVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID 335 (809)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (809)
++..+|+...+.||..|+|+++....+.|+++.|++.+ ++++.+|++.|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcc
Confidence 89999999999999999999999999999999887553 455566666666666
Q ss_pred cccHHHHHHHhhcCCChHH-HHHHHHHHHH----hcc----CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------
Q 003584 336 DFTYPSVLNCFASNIDLNN-AKSVHSLIVK----TGF----EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK------ 400 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~----~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------ 400 (809)
..+|..+|..+++.++... +..+...+.. ..+ +.|...+..-++.+.+..+.+-|.++-.-....
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 6666666666655555433 2222222222 111 123334444455555556666555554443321
Q ss_pred -----CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHH
Q 003584 401 -----DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVD 475 (809)
Q Consensus 401 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 475 (809)
...-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++-..+++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 123455666777788888888888888888777888888888888888888888888888888776643332222
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQN-GKGKEA-LQFYDQMLARGTKPDYITFVGLLFACSHAGL 553 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 553 (809)
.-+...+++.. +.|+...-..+-...++. -++.++ ...-.+|.+..+.|. ..+.++.-+.+.|.
T Consensus 472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcch
Confidence 22222221111 022212111111111110 011111 122234444434333 34444455677788
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHH---HHHHHHhhcCCHHHHHHHHHhCc
Q 003584 554 AENARWYFESMDKVYGIKPGPDHYA---CMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 554 ~~~a~~~~~~m~~~~~~~p~~~~~~---~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
.++|.+++..+.+..+-.|.....+ -+++.-.+....-.|...++-|.
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888877755544445444444 34455556677777777777664
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-11 Score=126.05 Aligned_cols=495 Identities=14% Similarity=0.084 Sum_probs=297.4
Q ss_pred HHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHHHhhCCChHH
Q 003584 141 RLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITGYSQNGYGFK 218 (809)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~ 218 (809)
++.....+.+.|+.++...++.- +.+.. |.-+|++...++.|.+++.+..+. .+...|.+-...--.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 44555666667777777777654 22333 334456666778888888654431 466778777777778888888
Q ss_pred HHHHHHH----HHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhCCChHHHHHH
Q 003584 219 AIECFRD----MRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEA--NVYVQSALIDMYAKCGDLDSARRL 292 (809)
Q Consensus 219 A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~ 292 (809)
...+..+ +...|+..|...|..=..+|-..|..-....+....+..|++. -..+|+.-.+.+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 7777654 4567888888888888888888888888888888888888653 245777778888888888888888
Q ss_pred HhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003584 293 LEYSE---IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG 369 (809)
Q Consensus 293 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 369 (809)
|.... ..+...|...+..--..|..++-..+|++....-++ ....+.......-..|+...|+.++..+.+.. +.
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pn 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PN 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CC
Confidence 86544 235566777666666678888888888888765322 22333333334445566666666666666554 23
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHH
Q 003584 370 YKFVNNALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSAC 447 (809)
Q Consensus 370 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 447 (809)
+..+|-+-+..-....+++.|+.+|.+... ++...|.--+...--.+..++|++++++..+. -|+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~--------- 685 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH--------- 685 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH---------
Confidence 555666666666666666666666665543 34444544444444455666666666555543 34322
Q ss_pred hcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeechHHHHHHHhcCChHHHHH
Q 003584 448 AELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--R-DVITWTALIMGCAQNGKGKEALQ 524 (809)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 524 (809)
..|-.+.+.|-+.++++.|.+.|..-.+ | .+..|-.+...--+.|..-.|..
T Consensus 686 -------------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 686 -------------------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred -------------------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 2333334444444444444444443331 2 22344444444444445555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCC
Q 003584 525 FYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604 (809)
Q Consensus 525 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 604 (809)
+|++....+ +-|..-|...+..=.+.|..++|..+.....+ ..+.+...|.--|-+..+.++-..+.+.+++.. .
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~ 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--H 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence 555444431 22333444445555555555555554444443 233333445555555555555555555555543 4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNS 684 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~ 684 (809)
|+.+.-+....+.....++.|..-|++++..+|++..++..+...+...|.-++-.+++.+.... .|..|..|+.+..
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 55555555666666667777777777777777777777777777777777777777777666544 3455666766555
Q ss_pred E
Q 003584 685 Q 685 (809)
Q Consensus 685 ~ 685 (809)
.
T Consensus 894 ~ 894 (913)
T KOG0495|consen 894 D 894 (913)
T ss_pred h
Confidence 4
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-11 Score=131.23 Aligned_cols=610 Identities=13% Similarity=0.117 Sum_probs=335.1
Q ss_pred hcCCChHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHHHHhh---hCCCCCcchHHHHHHHHHcCCCchhHHHH
Q 003584 47 SNSGEIDEAGQLFEKMSDR---DGFTWNTMIAAYANSGRLREAKKLFN---ETPFKNFFTWSSLIYGYSNYGLDIEAFEL 120 (809)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 120 (809)
...|++++|.+++...+.. +...|-+|-..|-..|+.+++...+= .....|..-|-.+-.-..+.|++..|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3449999999998887764 45678899999999999999887663 34455667888888888899999999999
Q ss_pred HHHHHHcCCCCCcc-cHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH----HHHhhhcCCChhHHHHHhhhCC
Q 003584 121 FWQMQLEGYRPSQY-TLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG----LVDMYAKCKCIFEAEYLFKMFP 195 (809)
Q Consensus 121 ~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~ 195 (809)
|.+.++.. |+.. .+---...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++...
T Consensus 230 y~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 230 YSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99988743 4442 222334567788999999988888887764333322222 3455666677788888887654
Q ss_pred CC----CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCc----------------------chHH----HHHHHH
Q 003584 196 DG----KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ----------------------FTFP----SILTAC 245 (809)
Q Consensus 196 ~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~~----~ll~~~ 245 (809)
.. -+...+|.++..|.+...++.|......+......+|. ..|. -+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 41 24456889999999999999999988888762222222 1111 122233
Q ss_pred hccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChHHHHHHHhccCC----CCeeeHHHHHHHHHhcCChhH
Q 003584 246 AAVSARDFGAQVHGCILSSG--FEANVYVQSALIDMYAKCGDLDSARRLLEYSEI----DNEVSWNSMIVGFARQGFHKE 319 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~ 319 (809)
......+....+...+.+.. ...++..+.-+.++|...|++.+|.++|..+.. .+...|--+...|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555556666666666665 334556677777777777888888777766653 345667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHH--------HhccCCchHHHHHHHHHHHhcCCHHHH
Q 003584 320 ALSLFKKMHARDIKIDD-FTYPSVLNCFASNIDLNNAKSVHSLIV--------KTGFEGYKFVNNALIDMYAKQGNLDCA 390 (809)
Q Consensus 320 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A 390 (809)
|.+.|.+.... .|+. ..-.++-..+.+.|+.++|.+.++.+. ..+..|+..+.--..+.|.+.|+.++=
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777777664 2332 223344445566677777777776643 223344455555556666666666553
Q ss_pred HHHHhhcCCC--------------------------CHhHHHHHHHHHHhcCCHHHHHHH------HHHHhhcCCccCH-
Q 003584 391 FMVFNLMQDK--------------------------DVISWTSLITGCAYHGSYEEALKY------FSDMRISGICPDH- 437 (809)
Q Consensus 391 ~~~f~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~g~~p~~- 437 (809)
..+-..|..+ ....--..+.+-.+.++.....+- +.--...|+.-+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 3322222110 000111111111111111100000 0000001111111
Q ss_pred -hHHHHHHHHHhcccchhHHHHHHHHHHHhCC-CCCh----hHHhHHHHHHHhcCCHHHHHHHHHhcCCC-----C---e
Q 003584 438 -VVVSSILSACAELTVLEFGQQVHAVFLKSGG-CSSL----SVDNSLVLVYAKCGCINDANRVFDSMHTR-----D---V 503 (809)
Q Consensus 438 -~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~----~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~---~ 503 (809)
.-+.-++.+.++.+..++|..+...+..... ..+. ..-...+.+....+++..|...+..|... + .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1122233344444444444444444333211 1111 11122233333344444444444444321 1 1
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH-HH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL--LFACSHAGLAENARWYFESMDKVYGIKPGPDHYA-CM 580 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l 580 (809)
..||...+.+.+.|+-.--..++..... .+|+......+ ..-....+.+.-|.+++-... ...|+...++ ||
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHH
Confidence 2344333333333332222222222111 11221111111 111233456666776655443 3345533332 22
Q ss_pred HHHHh----------hcCCHHHHHHHHHhCcC--CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-----
Q 003584 581 IDLLG----------RSGKLIEAKALLDQMVG--EP--DATVWKALLSACRVHGDLELGERAANNLFELEPMNAM----- 641 (809)
Q Consensus 581 i~~~~----------~~g~~~eA~~~~~~m~~--~p--~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~----- 641 (809)
.-++. |.-.+-.+..++.+... .+ -..++-.++.+|...|-...|+..|++++++.|.+..
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 22221 11223344455443332 12 3346777888999999999999999999998765332
Q ss_pred -------cHHhHhhhhhhcCChhHHHHHHHH
Q 003584 642 -------PYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 642 -------~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
+-..|.-+|.+.|+..-|.+++++
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 233567788999999888887764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-10 Score=119.06 Aligned_cols=447 Identities=12% Similarity=0.041 Sum_probs=310.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 003584 214 GYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLL 293 (809)
Q Consensus 214 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 293 (809)
.+.+.|.-++.+..+- -|.. .-+.-+++++..++.|+.++....+. ++.+..+|.+-...=-..|+.+...++.
T Consensus 390 E~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred cChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444555555555442 2211 12334455555666666666665544 3455555555555555566666666665
Q ss_pred hccC--------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHhhcCCChHHHHHHHHHHH
Q 003584 294 EYSE--------IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID--DFTYPSVLNCFASNIDLNNAKSVHSLIV 363 (809)
Q Consensus 294 ~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 363 (809)
++.. .-+...|-.=...+-..|..--+..+......-|+.-. ..|+......|.+.+.++-++.+|...+
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 4322 11223344444455555655555666666655554322 3567777778888888888888888887
Q ss_pred HhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHH
Q 003584 364 KTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVV 440 (809)
Q Consensus 364 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 440 (809)
+. ++.+..+|...+..--..|..++-..+|++... +..+.|-.....+-..|+...|..++.+..+... -+...+
T Consensus 544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiw 621 (913)
T KOG0495|consen 544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIW 621 (913)
T ss_pred hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHH
Confidence 65 356667777777766677888888888887654 3557788778888888999999998888877642 255667
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CCe-eechHHHHHHHhcC
Q 003584 441 SSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--RDV-ITWTALIMGCAQNG 517 (809)
Q Consensus 441 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g 517 (809)
...+..-.....++.|+.++...... .++..+|.--+...--.+..++|.+++++..+ |+- ..|-.+...+-+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH
Confidence 77777777888889999988887664 45666666666666778999999999988774 443 46777778888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003584 518 KGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKAL 596 (809)
Q Consensus 518 ~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 596 (809)
+.+.|.+.|..-.+ .-|+.. .|..|...=.+.|.+-.|+.+++.... .-+.+...|-..|.+=.|.|+.+.|..+
T Consensus 700 ~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 700 NIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999888876555 357665 455555556778899999999998764 3445678899999999999999999999
Q ss_pred HHhCcCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccC
Q 003584 597 LDQMVGE-P-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKE 674 (809)
Q Consensus 597 ~~~m~~~-p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 674 (809)
+.+...+ | +...|..-|...-..++-.....+++ .-..|+.....++.++....+++.|.+.|.+....+. +
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d 849 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--D 849 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--c
Confidence 9888764 4 45589888888877777555544444 3445677888899999999999999999999887654 4
Q ss_pred CceeEE
Q 003584 675 PGCSWV 680 (809)
Q Consensus 675 ~~~s~~ 680 (809)
-|-.|.
T Consensus 850 ~GD~wa 855 (913)
T KOG0495|consen 850 NGDAWA 855 (913)
T ss_pred cchHHH
Confidence 454553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-12 Score=127.41 Aligned_cols=298 Identities=15% Similarity=0.148 Sum_probs=185.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhcCCCCcc----hHHH---HHHHHHccCChh-------------------------H
Q 003584 38 DLNRALVDFSNSGEIDEAGQLFEKMSDRDGF----TWNT---MIAAYANSGRLR-------------------------E 85 (809)
Q Consensus 38 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~---li~~~~~~g~~~-------------------------~ 85 (809)
+=++|++- ..+|.+.++.-++++|...+.. +--. |+..|.. .++- -
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns-~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNS-SNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcC-CCCcchhHHHHhhccccccccccccccccH
Confidence 44555553 4567888888888888764322 1222 2222222 1111 1
Q ss_pred HHHHhhhCCCCCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCC
Q 003584 86 AKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFD 165 (809)
Q Consensus 86 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 165 (809)
|.-+| +...+...+|.+||.+.|+--..+.|.++|++..+...+.+..+|+.+|.+.+-. .++.+...|+...+.
T Consensus 196 AdL~~-E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLF-ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHH-hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 22223 3333455789999999999999999999999999988899999999999875433 347888889988889
Q ss_pred CchHHHHHHHHhhhcCCChhHHHHHhhh----CC---CCCCcccHHHHHHHHhhCCChHH-HHHHHHHHHH----CCCCC
Q 003584 166 LNAFVVTGLVDMYAKCKCIFEAEYLFKM----FP---DGKNHVAWTTMITGYSQNGYGFK-AIECFRDMRV----EGVES 233 (809)
Q Consensus 166 ~~~~~~~~li~~y~~~g~~~~A~~~f~~----~~---~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p 233 (809)
||.+++|++++..++.|.++.|++.+-+ |+ ..|...+|..+|..+.+.+++.+ |..+..+.+. ..++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999988887665432 22 13666777777777777666643 3333333332 22222
Q ss_pred ----CcchHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHH
Q 003584 234 ----NQFTFPSILTACAAVSARDFGAQVHGCILSSG----FEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWN 305 (809)
Q Consensus 234 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 305 (809)
|...|.+.+..|.+..+.+.|.++++.+.... +.|+. ....-|.
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------------------~~~fYyr 402 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------------------HRNFYYR 402 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------------HHHHHHH
Confidence 33446666777777777777777766543321 11110 0011233
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCc
Q 003584 306 SMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370 (809)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 370 (809)
.+....++....+.-+..|+.|.-.-.-|+..+...++++....+.++...+++..++..|...+
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 44445555555666666666666555566666666666666666666666666666666554333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-11 Score=128.95 Aligned_cols=585 Identities=13% Similarity=0.041 Sum_probs=370.7
Q ss_pred HHccCChhHHHHHhhhCCCC---CcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCc-ccHHHHHHHhhcCCCchHH
Q 003584 77 YANSGRLREAKKLFNETPFK---NFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQ-YTLDNVLRLCSLKGLLQRG 152 (809)
Q Consensus 77 ~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a 152 (809)
+++ |++++|.+++.++... +...|.+|...|-+.|+.++++..+-..-. +.|.. ..|..+-......|.+..|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHH
Confidence 444 9999999999998764 457899999999999999999877654443 44544 4677777888899999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCc-cc-------HHHHHHHHhhCCChHHHHHHHH
Q 003584 153 EQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNH-VA-------WTTMITGYSQNGYGFKAIECFR 224 (809)
Q Consensus 153 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~-------~~~li~~~~~~g~~~~A~~l~~ 224 (809)
.-++..+++.. +++....-.-..+|-+.|+...|...|.++-. .+. +. --.++..+...++.+.|++.++
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999987 44555555567889999999999888877654 211 22 2234556667777799999888
Q ss_pred HHHHC-CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh---------------------------CCCCchhH-HHH
Q 003584 225 DMRVE-GVESNQFTFPSILTACAAVSARDFGAQVHGCILSS---------------------------GFEANVYV-QSA 275 (809)
Q Consensus 225 ~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~ 275 (809)
..... +-..+..+++.++..+.+....+.|....-..... ++.++..+ ...
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 87652 22334455677777777777777776665555441 12333333 111
Q ss_pred HHHHHHhCCChHHHHHHHhcc----CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCC
Q 003584 276 LIDMYAKCGDLDSARRLLEYS----EIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351 (809)
Q Consensus 276 Li~~y~~~g~~~~A~~~f~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (809)
+--.-.+.+...++..-|-.. +..++..|..+..+|...|++.+|+.+|..+.....--+...|..+..++...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 112222334444554444211 2234567888999999999999999999999887666667789999999999999
Q ss_pred hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHh------------HHHHHHHHHHhcCCHH
Q 003584 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVI------------SWTSLITGCAYHGSYE 419 (809)
Q Consensus 352 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~------------~~~~li~~~~~~g~~~ 419 (809)
.++|.+.++.++... +.+..+--.|...|-+.|+.++|.+++..+..+|.. .--.....|.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998865 455566778888999999999999999998766521 1122345677788887
Q ss_pred HHHHHHHHHhhcC-----CccC-----------------HhHHHHHHHHHhcccchhHHHHHH------HHHHHhCCCCC
Q 003584 420 EALKYFSDMRISG-----ICPD-----------------HVVVSSILSACAELTVLEFGQQVH------AVFLKSGGCSS 471 (809)
Q Consensus 420 ~A~~~~~~m~~~g-----~~p~-----------------~~t~~~ll~a~~~~~~~~~a~~~~------~~~~~~g~~~~ 471 (809)
+=+..-..|.... +-|+ ..+.-.+..+-.+.++....++-. ......|+..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 7666555554321 1111 111112222222222211111110 01111222211
Q ss_pred h--hHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe---------eechHHHHHHHhcCChHHHHHHHHHHHHC-CC--CCC
Q 003584 472 L--SVDNSLVLVYAKCGCINDANRVFDSMHTRDV---------ITWTALIMGCAQNGKGKEALQFYDQMLAR-GT--KPD 537 (809)
Q Consensus 472 ~--~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~pd 537 (809)
. ..+.-++..+++.|++++|..+...+..-++ ..-..++.+....+++.+|...++.|... +. .|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1 2445577888899999999998887763221 12234566677889999999999988864 11 233
Q ss_pred HH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHH
Q 003584 538 YI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP--DHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALL 613 (809)
Q Consensus 538 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll 613 (809)
.. .|+..++.....|+-.--..++.... ...|+. ..+..-...+..++.+.-|+..+-+.-. -||.+..+.++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 32 33334444444443222222222221 222222 1122223345567888888876544332 35655444443
Q ss_pred HHH-----------HhcCChhHHHHHHHHHhccCCC--CCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 614 SAC-----------RVHGDLELGERAANNLFELEPM--NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 614 ~a~-----------~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..- .+|-.+-.+...+.+..++.-. .-.++..++.+|-..|-..-|..++++..+-.
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 321 1222355566666666665433 56789999999999999999999999988653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-12 Score=134.94 Aligned_cols=533 Identities=12% Similarity=0.057 Sum_probs=306.0
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCC
Q 003584 119 ELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGK 198 (809)
Q Consensus 119 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 198 (809)
.++-.|...|+.||.+||.+++..|+..|+++.|- ++..|.-..++.+..+++.++......++.+.|. + |
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-p 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-P 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-C
Confidence 45667788888898888988888888888888888 8888888888888888888888888888877765 3 6
Q ss_pred CcccHHHHHHHHhhCCChHHHHHHHHH-HH-------HCCCCCCcchHHHHHHHHhccC-C------hHHHHHHHHHHHH
Q 003584 199 NHVAWTTMITGYSQNGYGFKAIECFRD-MR-------VEGVESNQFTFPSILTACAAVS-A------RDFGAQVHGCILS 263 (809)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~ 263 (809)
...+|+.|..+|.+.|+... ++..++ |. ..|+..-..-|...+.+|...- + ..--+.+++..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999888655 333333 22 1233222222322223222110 1 0111123333333
Q ss_pred hCCCCchhHHH--H--HHHHHHh-CCChHHHHHHHhccC-CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 003584 264 SGFEANVYVQS--A--LIDMYAK-CGDLDSARRLLEYSE-IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDF 337 (809)
Q Consensus 264 ~g~~~~~~~~~--~--Li~~y~~-~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 337 (809)
.+....+..++ . .++-... ...+++-..+..... .++..++.+++..-..+|+.+.|..++.+|.+.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 33111111111 1 1111111 122333333333333 4788899999999999999999999999999999999998
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC
Q 003584 338 TYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGS 417 (809)
Q Consensus 338 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 417 (809)
-|..++-+ .++....+.+..-|...|+.|+..++...+-...++|....+.+..+.-..-....+..+..+...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 88888766 788888899999999999999999998888777776663333222111111112233333333111111
Q ss_pred HH-----HHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 418 YE-----EALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 418 ~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
.+ -....+.+..-.|+.-....|..... ....|.-+..+++...+..-- ...-+.-+++|. +.+.
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt----~r~s~~~V~a~~-----~~lr 387 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPT----LRDSGQNVDAFG-----ALLR 387 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCc----cccCcchHHHHH-----HHHH
Confidence 11 12222222222333333333322222 222455566666655543211 111111122221 2233
Q ss_pred HHHHhcCCCCeeechHHHHHHHh---cCChHHHHHHHHHH------------HHC----CCCC-------CHHHHHHHHH
Q 003584 493 RVFDSMHTRDVITWTALIMGCAQ---NGKGKEALQFYDQM------------LAR----GTKP-------DYITFVGLLF 546 (809)
Q Consensus 493 ~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m------------~~~----g~~p-------d~~t~~~ll~ 546 (809)
+.|.+...+....-.-.-.+... .....+..++.... ... -+.| -...-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 44444433222111111111111 11111111111111 100 0111 0112344555
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-----CCHHHHHHHHHHHHhcCC
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-----PDATVWKALLSACRVHGD 621 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-----p~~~~~~~ll~a~~~~g~ 621 (809)
.|...-+..++...-+..... -+ | ..|..||+.+.+..++++|..+.++...+ -|..-+..+.....+++.
T Consensus 468 ~l~se~n~lK~l~~~ekye~~-lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDL-LF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 566655556665444333221 22 2 67999999999999999999999988732 344567788888999999
Q ss_pred hhHHHHHHHHHhc---cCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeE
Q 003584 622 LELGERAANNLFE---LEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSW 679 (809)
Q Consensus 622 ~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 679 (809)
...+..+.+.+.+ ..|.-......+.+.-+..|+.+...++.+-....|+.- .|--|
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 9999888887755 345455667778888899999999999999999888865 34445
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=129.18 Aligned_cols=204 Identities=11% Similarity=0.067 Sum_probs=156.5
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.|++++|...+.+++...-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...++.+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 455555555555554433211122222 2334677899999999987765 456666667788898999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC
Q 003584 527 DQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD 605 (809)
Q Consensus 527 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~ 605 (809)
.+.... ++.|+..+..|...|-+.|+-.+|.+++-.--. -++.+.++..-|..-|....-+++|+.+|++... +|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 887764 555667888899999999999999998754322 3445778888888889999999999999998754 899
Q ss_pred HHHHHHHHHHH-HhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChh
Q 003584 606 ATVWKALLSAC-RVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWE 657 (809)
Q Consensus 606 ~~~~~~ll~a~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 657 (809)
.+-|..++..| ++.|++..|..+|+.....-|.+....-.|..++...|..+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 99999998777 67899999999999999999999999999999988887643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-11 Score=127.68 Aligned_cols=616 Identities=12% Similarity=0.077 Sum_probs=336.5
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHH
Q 003584 33 VKPASDLNRALVDFSNSGEIDEAGQLFEKMSDR----DGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGY 108 (809)
Q Consensus 33 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 108 (809)
.|...+|.+++..|+..|+.+.|- +|..|.-. +..+++.++.+...+|+.+.+. +|...+|+.|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 344568888888899999988888 77766543 4567888888888888877665 67788999999999
Q ss_pred HcCCCchhHHHHHHH-H---H----HcCCCCCcccHHHHHHHhhcCCCchHH---------HHHHHHHHHhCCCCchHHH
Q 003584 109 SNYGLDIEAFELFWQ-M---Q----LEGYRPSQYTLDNVLRLCSLKGLLQRG---------EQFHGYAIKTCFDLNAFVV 171 (809)
Q Consensus 109 ~~~g~~~~A~~~~~~-m---~----~~g~~p~~~t~~~ll~~~~~~~~~~~a---------~~~~~~~~~~g~~~~~~~~ 171 (809)
.+.|+... ++..++ | . ..|+.--..-|...+++|. +.+..+ +.+++..++.+....+..+
T Consensus 94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 99998765 333232 2 1 1232222222222222221 111111 2233444444411111111
Q ss_pred HHHHHhhhcCC--ChhHHHHHh---hhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 003584 172 TGLVDMYAKCK--CIFEAEYLF---KMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACA 246 (809)
Q Consensus 172 ~~li~~y~~~g--~~~~A~~~f---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 246 (809)
+.-...+.+.. .....+++. ....+.++..++.+++..-.-+|+.+.|..++.+|.+.|++.+..-|..+|-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-- 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-- 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--
Confidence 11111111111 112222222 22222378889999999999999999999999999999999998888887766
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCCh-----hHHH
Q 003584 247 AVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFH-----KEAL 321 (809)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~-----~~A~ 321 (809)
.++...+..+..-|.+.|+.|+..|+.--+-...++|....+....+.-.--....+..+..+...+.+. .-..
T Consensus 249 -~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~ 327 (1088)
T KOG4318|consen 249 -INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVI 327 (1088)
T ss_pred -CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 7888888899999999999999999988777777655533332221100000111122222221111111 1112
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHhcC-------------
Q 003584 322 SLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGF---EGYKFVNNALIDMYAKQG------------- 385 (809)
Q Consensus 322 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g------------- 385 (809)
..+.+..-.|+......|.. ..-....|.-+..+++-..+..--. ..++..+..++.-|.+.-
T Consensus 328 ~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~q 406 (1088)
T KOG4318|consen 328 GSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQ 406 (1088)
T ss_pred HHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22222222233222222221 1122224555555555555433211 112223333333333221
Q ss_pred ---------CHHHHHHHHhhcCCCCHh-----------------HH-----------HHHHHHHHhcCCHHHHHHHHHHH
Q 003584 386 ---------NLDCAFMVFNLMQDKDVI-----------------SW-----------TSLITGCAYHGSYEEALKYFSDM 428 (809)
Q Consensus 386 ---------~~~~A~~~f~~~~~~~~~-----------------~~-----------~~li~~~~~~g~~~~A~~~~~~m 428 (809)
......++.... .||.. .| +.++..++..-+..+++..-+..
T Consensus 407 gls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 407 GLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 12110 11 12222333333333333222222
Q ss_pred hhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH--hCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC-----
Q 003584 429 RISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK--SGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR----- 501 (809)
Q Consensus 429 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----- 501 (809)
... .-| -.|..++.-|.....++.|..+.+++.. ..+..|..-+..+.+...+.+...++..++.++.+.
T Consensus 486 e~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~ 562 (1088)
T KOG4318|consen 486 EDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP 562 (1088)
T ss_pred HHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence 111 111 4467777778888888888888777654 234456777788889999999999999998888742
Q ss_pred C-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------------HH------------------HHHHHH----
Q 003584 502 D-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY------------IT------------------FVGLLF---- 546 (809)
Q Consensus 502 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------------~t------------------~~~ll~---- 546 (809)
+ ..+.--++++.+..|+.+.-.++++-+...|+.-.. .+ ...+.+
T Consensus 563 ~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 563 LVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred hHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh
Confidence 1 123344566777888888888888888877653210 00 011111
Q ss_pred -----------------HHHccCCHHHHHHHHHHhHHhhCC---------------CC---------ChHHHHHHHHHHh
Q 003584 547 -----------------ACSHAGLAENARWYFESMDKVYGI---------------KP---------GPDHYACMIDLLG 585 (809)
Q Consensus 547 -----------------a~~~~g~~~~a~~~~~~m~~~~~~---------------~p---------~~~~~~~li~~~~ 585 (809)
.|.+.|++.+|.++.+ ..|+ .| +.....-|+..|.
T Consensus 643 e~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~ 718 (1088)
T KOG4318|consen 643 ETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYL 718 (1088)
T ss_pred hccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHH
Confidence 1222222222222221 0011 01 1122334677889
Q ss_pred hcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCCcc---HHhHhhhhhhcCChhHH
Q 003584 586 RSGKLIEAKALLDQMVGEPDATVWKALLSACRVHG---DLELGERAANNLFELEPMNAMP---YVQLSNMYSTAGKWEDA 659 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g---~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A 659 (809)
+.|+++.|..++.+++..|+..+...|+..++.+. ++.++...-+++.++.|..+.+ |.-.+....+....+.|
T Consensus 719 ~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaA 798 (1088)
T KOG4318|consen 719 EEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAA 798 (1088)
T ss_pred hhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHH
Confidence 99999999999999987788888888888887765 4555555666666666544433 33333344444455578
Q ss_pred HHHHHHHHhCCC
Q 003584 660 ARVRKLMKSRGI 671 (809)
Q Consensus 660 ~~~~~~m~~~~~ 671 (809)
.+.+.+..+...
T Consensus 799 kk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 799 KKCFERLEEQLT 810 (1088)
T ss_pred HHHHHHHHHccC
Confidence 899999888744
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-14 Score=142.86 Aligned_cols=213 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
.++.+.|.+.+..+...+. .+...+..++.. ...+++++|.+++...- .++...|..++..+...|+++++..+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444443331 234445555555 57788888888887664 4566778888888999999999999999
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--C
Q 003584 528 QMLARG-TKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG--E 603 (809)
Q Consensus 528 ~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~ 603 (809)
++.... .+++...|..+...+.+.|+.++|...++...+. .|+ ......++.++...|+.+++.++++.... +
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 987643 3456667888888899999999999999988753 564 67788899999999999998888776653 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
.|+..|..+..++...|+.++|...++++.+..|+|+.....+++++...|+.++|.+++++..
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667899999999999999999999999999999999999999999999999999999988754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-10 Score=117.11 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=167.4
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|++.. +.|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666777777777766533322 25555667888888888888998776 345667777777778888999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC
Q 003584 527 DQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP 604 (809)
Q Consensus 527 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p 604 (809)
++.+. +.|+. ..|..+.-+..+.+.++++...|+..++ .++-.++.|+.....+..+++++.|.+.|+.... +|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 56655 4788888888889999999999999987 4556678899999999999999999999998764 34
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 605 D---------ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 605 ~---------~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+ +.+-.+++-.-. .+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 222333332222 3899999999999999999999999999999999999999999998754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-10 Score=124.52 Aligned_cols=254 Identities=13% Similarity=0.014 Sum_probs=158.6
Q ss_pred hcCCChHHHHHHHHHHHHhccCCchHHH--HHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHH
Q 003584 347 ASNIDLNNAKSVHSLIVKTGFEGYKFVN--NALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEA 421 (809)
Q Consensus 347 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 421 (809)
...|+.+.+.+.+..+.+. .|+.... ......+...|+++.|...++.+.+ .++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555555432 2332222 2335667778888888888887765 3566777888888888899999
Q ss_pred HHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--
Q 003584 422 LKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH-- 499 (809)
Q Consensus 422 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-- 499 (809)
.+++..+.+.+..++. .+..+-. ..+..++....+..+.+...++++.++
T Consensus 207 ~~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 207 LDILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 9888888876644322 1111000 001111111222233444555555554
Q ss_pred -CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH
Q 003584 500 -TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA 578 (809)
Q Consensus 500 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 578 (809)
+.++.....+..++...|+.++|.+.+++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 235556667777777788888888888777763 444421 1233333457778888877777653 233445667
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
++..++.+.|++++|.+.|++... .|+...+..|...+...|+.++|..++++.+.+-
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 778888888888888888887765 4888887788888888888888888888877653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-11 Score=127.16 Aligned_cols=276 Identities=15% Similarity=0.052 Sum_probs=217.6
Q ss_pred CHHHHHHHHhhcCC--CCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CccCHhHHHHHHHHHhcccchhHHHHHH
Q 003584 386 NLDCAFMVFNLMQD--KDV-ISWTSLITGCAYHGSYEEALKYFSDMRISG--ICPDHVVVSSILSACAELTVLEFGQQVH 460 (809)
Q Consensus 386 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 460 (809)
+..+|...|...++ .|+ .....+..+|...+++++|.++|+...+.. ..-+...|.++|...-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788888888665 233 344556788999999999999999998752 112566788877654322 122222
Q ss_pred HHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC---CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003584 461 AVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR---DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD 537 (809)
Q Consensus 461 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 537 (809)
..-+-.--+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+-+..-+.....+|.|...|+..+. +.|+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223667899999999999999999999999998854 456777777778889999999999999876 4565
Q ss_pred HH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHH
Q 003584 538 YI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALL 613 (809)
Q Consensus 538 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll 613 (809)
.. .|-.+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.|+|+.+++++.. +.|+..--..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 54 77788889999999999999998876 67775 46667788899999999999999998874 34555555566
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 614 SACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..+...++.++|+..++++.++-|+++..|..++.+|.+.|+.+.|..-|.-|.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778888999999999999999999999999999999999999999999888776553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-08 Score=101.97 Aligned_cols=482 Identities=13% Similarity=0.077 Sum_probs=335.2
Q ss_pred cCCChhHHHHHhhhCCC--CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 003584 180 KCKCIFEAEYLFKMFPD--GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQV 257 (809)
Q Consensus 180 ~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 257 (809)
..+++..|+.+|++... .++...|--.+..-.++.....|..++++....=.+.|.. |.--+..=-.+|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 34667778888877544 2566777777888888888888888888876542222322 22233333467888899999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC-CC-C
Q 003584 258 HGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYS--EIDNEVSWNSMIVGFARQGFHKEALSLFKKMHAR-DI-K 333 (809)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~ 333 (809)
|+.-.+. .|+...|++.|+.=.+...++.|+.++++. ..|++.+|--....=-++|....|..+|....+. |- .
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9888765 688999999999999999999999999874 4688888888888888889999888888887653 10 1
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC-chHHHHHHHHHHHhcCCHHHHHHHH--------hhcCCC---C
Q 003584 334 IDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG-YKFVNNALIDMYAKQGNLDCAFMVF--------NLMQDK---D 401 (809)
Q Consensus 334 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f--------~~~~~~---~ 401 (809)
.+...|++...--.+...++.|.-++...+..-... ....|..+...=-+-|+......+. +.+... |
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 112223333333345677888888888888763221 1345555555555556644333322 222222 4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh-------HHHH---HHHHHhcccchhHHHHHHHHHHHhCCCCC
Q 003584 402 VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV-------VVSS---ILSACAELTVLEFGQQVHAVFLKSGGCSS 471 (809)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~---ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 471 (809)
-.+|-..+..--..|+.+...++|++.... ++|-.. .|.- .+-.=....+.+.++++++..++ -++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence 567878888888889999999999998865 455221 1111 11111346789999999999988 45667
Q ss_pred hhHHhHHHHHHH----hcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003584 472 LSVDNSLVLVYA----KCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545 (809)
Q Consensus 472 ~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 545 (809)
..++..+--+|+ ++.++..|.+++.... .|...++..-|..-.+.++++...+++++.++-+ +-|..++....
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kya 478 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYA 478 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHH
Confidence 778877776776 6789999999998776 5667778888888889999999999999999853 33456888877
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHH-----hc
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACR-----VH 619 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~-----~~ 619 (809)
.-=...|+.+.|..+|+.......+......|.+.|+-=...|.++.|..++++.... +...+|-++..--. ..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQE 558 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccccc
Confidence 7778899999999999988876445555567888888888999999999999999863 55668888765433 33
Q ss_pred C-----------ChhHHHHHHHHHhc----cCCCCC--ccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 620 G-----------DLELGERAANNLFE----LEPMNA--MPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 620 g-----------~~~~A~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+ +...|..+|+++.. .+|... ..+....++=...|...+...+-.+|.
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 3 55677778877754 233221 122233344455666666666666664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-10 Score=121.85 Aligned_cols=275 Identities=12% Similarity=0.079 Sum_probs=199.0
Q ss_pred cCCHHHHHHHHhhcCCC--CHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHH--HHHHHHhcccchhHHHH
Q 003584 384 QGNLDCAFMVFNLMQDK--DVI-SWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVS--SILSACAELTVLEFGQQ 458 (809)
Q Consensus 384 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 458 (809)
.|+++.|++......+. ++. .|-.......+.|++++|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765542 222 3322233446778888888888888754 45543333 22445677788888888
Q ss_pred HHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCee-----------echHHHHHHHhcCChHHHHHHHH
Q 003584 459 VHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVI-----------TWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 459 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 556778888889999999999999888888743221 23333443344455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-
Q 003584 528 QMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD- 605 (809)
Q Consensus 528 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~- 605 (809)
.+.+. .+.+......+..++...|+.++|.+.++...+ ..|+.... ++......++.+++.+..++... .|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345667888899999999999999999988764 34555322 22333355999999999988775 355
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+..+..+...|...|++++|.+.|+++++.+|++ ..|..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4478899999999999999999999999999965 5678999999999999999999987643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-09 Score=105.53 Aligned_cols=311 Identities=13% Similarity=0.112 Sum_probs=216.8
Q ss_pred hhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHH-HHHHHHHhcCCHHHHHHH
Q 003584 346 FASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWT-SLITGCAYHGSYEEALKY 424 (809)
Q Consensus 346 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~ 424 (809)
....|..+.|...+...+.. -+..|.+-+....-..+.+.+..+....+..+...-. -+..+|....+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544322 1233444444333344444444444333332211111 133455555677777777
Q ss_pred HHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC--CCChhHHhHHHHHHHhcCC--HH-HHHHHHHhcC
Q 003584 425 FSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG--CSSLSVDNSLVLVYAKCGC--IN-DANRVFDSMH 499 (809)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~k~g~--~~-~A~~~~~~~~ 499 (809)
.......|+.-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++ |.+..+ +. -|..++ .+.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~-~id 326 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVS-NID 326 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHH-Hhc
Confidence 77777777655544444444445567788889999988888742 12556665554 333332 22 122222 222
Q ss_pred CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHH
Q 003584 500 TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHY 577 (809)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~ 577 (809)
+--+.|...+.+-|+..++.++|...|++.++ +.|... .|..+..-|....+...|++.++... .+.| |-..|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAW 401 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAW 401 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHH
Confidence 33455677778888999999999999999998 466654 67777788999999999999999887 4555 66889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCC
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
-.|..+|.-.+...-|+-+|++... +| |...|.+|+..|.+.++.++|+..|.+++.....+...|+.|+++|-+.++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 44 677999999999999999999999999999887788999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 003584 656 WEDAARVRKLMKS 668 (809)
Q Consensus 656 ~~~A~~~~~~m~~ 668 (809)
.++|...+++-.+
T Consensus 482 ~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 482 LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-10 Score=121.25 Aligned_cols=290 Identities=14% Similarity=0.028 Sum_probs=174.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHH
Q 003584 313 RQGFHKEALSLFKKMHARDIKIDDFT-YPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAF 391 (809)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 391 (809)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356777777776665543 233222 23334455566777777777776655432222234444567778888888888
Q ss_pred HHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC
Q 003584 392 MVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG 468 (809)
Q Consensus 392 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 468 (809)
..++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+.......-..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 88888765 256677788888888899998888888888876432222111111110
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITF---V 542 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~ 542 (809)
..+++.-......+...+..+..+. .+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0001111111223333444444442 35666677777777777777777777777774 4444321 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh--Cc-CCCCHHHHHHHHHHHHhc
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQ--MV-GEPDATVWKALLSACRVH 619 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m~-~~p~~~~~~~ll~a~~~~ 619 (809)
.........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. .. ..||...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111122334667777777777665433333224555777788888888888888883 33 257777777888888888
Q ss_pred CChhHHHHHHHHHhc
Q 003584 620 GDLELGERAANNLFE 634 (809)
Q Consensus 620 g~~~~A~~~~~~~~~ 634 (809)
|+.++|.+++++.++
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-10 Score=113.04 Aligned_cols=436 Identities=13% Similarity=0.043 Sum_probs=262.2
Q ss_pred HHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHH
Q 003584 207 ITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPS-ILTACAAVSARDFGAQVHGCILSSGFEAN----VYVQSALIDMYA 281 (809)
Q Consensus 207 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~ 281 (809)
..-|.-+....+|+..|+-..+...-||.-.+.. +-+.+.+.+.+.+|.+.+...+..-...+ ....+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3445555566666666666666555555433221 12233445556666666665554422222 223344445567
Q ss_pred hCCChHHHHHHHhccC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHH
Q 003584 282 KCGDLDSARRLLEYSE--IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVH 359 (809)
Q Consensus 282 ~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 359 (809)
+.|++++|...|+... .||..+--.|+-.+..-|+.++..+.|.+|......||..-|.. ...
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~d--------- 352 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKD--------- 352 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcC---------
Confidence 7888888888887654 35555444455555567888888888888877655666554410 000
Q ss_pred HHHHHhccCCchHHHH-----HHHHHHHhcCC--HHH----HHHHHhhcCCCCHh---HHH------------------H
Q 003584 360 SLIVKTGFEGYKFVNN-----ALIDMYAKQGN--LDC----AFMVFNLMQDKDVI---SWT------------------S 407 (809)
Q Consensus 360 ~~~~~~g~~~~~~~~~-----~li~~y~~~g~--~~~----A~~~f~~~~~~~~~---~~~------------------~ 407 (809)
.|+....| -.+.-..+... .++ |.++..-+..+|-. -|. .
T Consensus 353 --------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 353 --------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred --------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 11111111 11111111111 111 11222222222210 010 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHH--HHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhc
Q 003584 408 LITGCAYHGSYEEALKYFSDMRISGICPDHVVVS--SILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKC 485 (809)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 485 (809)
-...|.++|+++.|+++++-..+..-+.-+..-+ ..|.-.....++..|.++-..++... .-+....+.-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 1345789999999999998887653222222222 22222222345666666665554322 11111111112223347
Q ss_pred CCHHHHHHHHHhcCCCCeeechHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003584 486 GCINDANRVFDSMHTRDVITWTALIM---GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
|++++|.+.+.+....|...-.+|.+ .+-..|+.++|+..|-++..- +..+...+..+.+.|....+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999998877654444433 366789999999999888763 34456678888899999999999999986
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh-CcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 563 SMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQ-MVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~-m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.... -++.|+...+-|.++|-+.|+-..|.+..-. ..- +-+..+..=|..-|....-.+.|+..|+++--+.|+..
T Consensus 583 q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred Hhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6542 3444778999999999999999999886432 221 23444444455555666668999999999999999777
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.-...++.++.+.|++..|..+++....+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66677788889999999999999988654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-11 Score=123.83 Aligned_cols=244 Identities=13% Similarity=0.138 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC--CCChhHHhHHHHHHHhcCCHHH-HHH
Q 003584 417 SYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG--CSSLSVDNSLVLVYAKCGCIND-ANR 493 (809)
Q Consensus 417 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~k~g~~~~-A~~ 493 (809)
+..+|+.+|...... +.-.......+-.+|...+++++++.+|+.+.+... -.+..+|++.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999995543 333445666677899999999999999999987542 3467778776654433222221 222
Q ss_pred HHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC
Q 003584 494 VFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKP 572 (809)
Q Consensus 494 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 572 (809)
+. .+.+..+.+|.++.+.|.-+++.+.|++.|++.++ +.| ...+|..+..=+.....+|.|...|+... ..
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22 22244678999999999999999999999999998 577 55688888888888899999999997654 45
Q ss_pred ChHHHHH---HHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHh
Q 003584 573 GPDHYAC---MIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 573 ~~~~~~~---li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
++.+|++ |.-.|.|.++++.|.-.|+++.. .| +.++...+...+.+.|+.|+|++++++++-++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6666665 45679999999999999999885 34 5667778888999999999999999999999999999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhC
Q 003584 648 NMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.++...+++++|...++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.5e-10 Score=113.50 Aligned_cols=196 Identities=16% Similarity=0.075 Sum_probs=157.2
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC---eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD---VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 545 (809)
|....+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 4556667777777777899999999998876433 358999999999999999999988887763 222233444555
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--------CC-CHHHHHHHHHH
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--------EP-DATVWKALLSA 615 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--------~p-~~~~~~~ll~a 615 (809)
--|...++.+.|.++|.... ++.| |+...+-+.-+.-..+.+.+|..+|+.... ++ -.++|+.|+.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 56888899999999998765 6666 445666666667778899999999987662 12 34578999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
|++.+..++|+..+++++.+.|.++.+|..++-+|...|+.+.|...|.+...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-12 Score=128.82 Aligned_cols=190 Identities=16% Similarity=0.132 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CccCHhHHHHHHHHHhc
Q 003584 373 VNNALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISG-ICPDHVVVSSILSACAE 449 (809)
Q Consensus 373 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~ 449 (809)
.+..++.. ...+++++|.+++...-+ ++...+..++..+.+.++++++.+++++..... ..++...|..+...+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 33444444 455555666555544322 344455556666666666666666666655322 22344444444455555
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.|+.+.|...++.+++.. |.+..+.+.++.++...|+.+++.+++.... ..|...|..+..+|...|++++|+..|
T Consensus 159 ~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 566666666666555554 3345556666667777777776666555443 345667777777777778888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 003584 527 DQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMD 565 (809)
Q Consensus 527 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 565 (809)
++.... .+.|..+...+..++...|+.++|.++.+...
T Consensus 238 ~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 238 EKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccc
Confidence 777764 13355566677777777777777777765543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-09 Score=115.65 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=140.0
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC---Ceeech----HHHHHHHhcCC
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR---DVITWT----ALIMGCAQNGK 518 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~ 518 (809)
.....|+.+.|...++.+.+.. +.+..+...+..+|...|++++|.+.++...+. +...+. ....++...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444544444444443 334445555566666666666666666655532 111111 11112233333
Q ss_pred hHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHH---HHHHHHHHhhcCCHHH
Q 003584 519 GKEALQFYDQMLARGT---KPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDH---YACMIDLLGRSGKLIE 592 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~e 592 (809)
.+++.+.+.++..... +.+...+..+...+...|+.++|.+.++...+. .|+... .....-.....++.++
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHH
Confidence 4444455656555321 136678888889999999999999999998864 344431 1112222334578888
Q ss_pred HHHHHHhCcC-CCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHH
Q 003584 593 AKALLDQMVG-EPD-A--TVWKALLSACRVHGDLELGERAAN--NLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLM 666 (809)
Q Consensus 593 A~~~~~~m~~-~p~-~--~~~~~ll~a~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 666 (809)
+.+.+++... .|+ + ....++...|.+.|++++|.+.++ ..++..|++. .+..++.++.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877664 343 4 567899999999999999999999 5777888654 5779999999999999999999986
Q ss_pred H
Q 003584 667 K 667 (809)
Q Consensus 667 ~ 667 (809)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 4
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-08 Score=102.04 Aligned_cols=284 Identities=15% Similarity=0.093 Sum_probs=157.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhcCC
Q 003584 309 VGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGF--EGYKFVNNALIDMYAKQGN 386 (809)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 386 (809)
.++-...+.+++++-.......|+.-+...-+....+.-...+++.|+.+|+.+.+... -.|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 34444456666666666666666544433333334444556677777777777766632 12344554444 333221
Q ss_pred --HHH-HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHH
Q 003584 387 --LDC-AFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAV 462 (809)
Q Consensus 387 --~~~-A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~ 462 (809)
+.- |..++ .+.+--+.|...+.+-|.-.++.++|...|++..+.+ |. ...|+.+-.-|....+...|.+.++.
T Consensus 313 skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111 22221 1222233444555556666677777777777776542 33 23344444456666666666666666
Q ss_pred HHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003584 463 FLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI 539 (809)
Q Consensus 463 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 539 (809)
+++.. +.|-..|-.|.++|.-.+...-|+-.|++.. +.|...|.+|...|.+.++.++|++.|.+....| ..+..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 66654 4566666666777777777666766666654 3356667777777777777777777777666654 33455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhh---C-CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003584 540 TFVGLLFACSHAGLAENARWYFESMDKVY---G-IKP-GPDHYACMIDLLGRSGKLIEAKALLDQ 599 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~ 599 (809)
.+..|...+.+.++.++|.++|+.-.+.. | +.| ......-|..-+.+.+++++|..+...
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 66666677777777777766665544421 1 222 112222244445556666665554433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-08 Score=98.35 Aligned_cols=423 Identities=11% Similarity=0.030 Sum_probs=257.7
Q ss_pred chHHHHHHHHHccCChhHHHHHhhhCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcc-cHHHHHHHh
Q 003584 68 FTWNTMIAAYANSGRLREAKKLFNETPF---KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQY-TLDNVLRLC 143 (809)
Q Consensus 68 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~ 143 (809)
..|-.-...=-..+++..|+.+|++... ++...|---+..-.++.+...|..++++... +-|-+. .|-.-+-.=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHH
Confidence 3444444444556778888888887543 5666777778888888888888888888776 334332 223333334
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC-CCCcccHHHHHHHHhhCCChHHHHHH
Q 003584 144 SLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD-GKNHVAWTTMITGYSQNGYGFKAIEC 222 (809)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l 222 (809)
-..|++..|+++++...+- +|+...|++.|+.=.+-..++.|+.++++..- .|++.+|--...--.++|+...|..+
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4568888889988887654 68888999999998899999999999987542 28888888888888889999999988
Q ss_pred HHHHHHCCCCCCcchHHHHHHHH----hccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChHHHHHHH----
Q 003584 223 FRDMRVEGVESNQFTFPSILTAC----AAVSARDFGAQVHGCILSSGFEA-NVYVQSALIDMYAKCGDLDSARRLL---- 293 (809)
Q Consensus 223 ~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f---- 293 (809)
|....+. -.|...-..++.++ .+....+.|+-++...+..-... ....|..+...=-+.|+........
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 8877643 12333333333443 35667888888888888764221 1445666665555666655443332
Q ss_pred ----hccCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-ccc------HHHH---HHHhhcCCChHHHH
Q 003584 294 ----EYSEID---NEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID-DFT------YPSV---LNCFASNIDLNNAK 356 (809)
Q Consensus 294 ----~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t------~~~l---l~~~~~~~~~~~a~ 356 (809)
+.+... |-.+|-..+..--..|+.+...++|++.... ++|- ... |.-+ +-.-....+.+.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222 4456666777777778888888888888765 3332 111 1111 11112446667777
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHH----hcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003584 357 SVHSLIVKTGFEGYKFVNNALIDMYA----KQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRI 430 (809)
Q Consensus 357 ~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (809)
++++..++ =++...+++.-+=-+|+ ++.++..|++++..... |-.-++-..|..=.+.++++....++++..+
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777666 23444444444433333 45666666666655443 3444555555555556666666666666655
Q ss_pred cCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhC-CCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC
Q 003584 431 SGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSG-GCSSLSVDNSLVLVYAKCGCINDANRVFDSMH 499 (809)
Q Consensus 431 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 499 (809)
-+ +-|..++......=..+|+.+.++.++..++... +.....++.+.|+.-..+|.++.|..+++.+.
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 43 2244455544444455555566666655555432 23334445555555555555555555555554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-10 Score=112.85 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=165.3
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFA 547 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 547 (809)
....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667788899999999999999997752 345677888889999999999999999998853 3345677788889
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHH
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELG 625 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A 625 (809)
+...|++++|.+.++..............+..+...+.+.|++++|.+.+++... .| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999876422233456677888999999999999999988764 23 456888999999999999999
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
...++++++..|.++..+..++.++...|++++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998887643
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-06 Score=87.96 Aligned_cols=308 Identities=14% Similarity=0.159 Sum_probs=181.7
Q ss_pred cchHHHHHHHHHccCChhHHHHHhhhCCC-----CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHH
Q 003584 67 GFTWNTMIAAYANSGRLREAKKLFNETPF-----KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLR 141 (809)
Q Consensus 67 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 141 (809)
+.+|-.-+..+.++|++..-++.|++.-. .....|...+.-.-..+.++-++.+|++-++ +.|.. -.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHH
Confidence 55787888888899999999999986422 2346788888888889999999999999887 33433 566677
Q ss_pred HhhcCCCchHHHHHHHHHHHhC------CCCchHHHHHHHHhhhcCCCh---hHHHHHhhhCCCC-CC--cccHHHHHHH
Q 003584 142 LCSLKGLLQRGEQFHGYAIKTC------FDLNAFVVTGLVDMYAKCKCI---FEAEYLFKMFPDG-KN--HVAWTTMITG 209 (809)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~-~~--~~~~~~li~~ 209 (809)
-++..+++.+|.+.+..++... ...+-..|..+-+..++..+. -....++..+... +| ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7788889998888887776332 245556677776666655332 2233444444331 23 3479999999
Q ss_pred HhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhCCChHH
Q 003584 210 YSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCIL-SSGFEANVYVQSALIDMYAKCGDLDS 288 (809)
Q Consensus 210 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~ 288 (809)
|.+.|.++.|.++|++-.+. .....-|+.+.++|+.......+..+- ... +.|-..+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHH
Confidence 99999999999999887654 234455677777766533222222211 000 111111111 1222
Q ss_pred HHHHHhccC---------------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc------ccHHHHHHHhh
Q 003584 289 ARRLLEYSE---------------IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDD------FTYPSVLNCFA 347 (809)
Q Consensus 289 A~~~f~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~ 347 (809)
...-|+.+. ..++..|..-+.. ..|+..+-...|.+..+. +.|.. ..+..+.+.|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 222333222 1234444443333 346666667777776553 22222 12444455555
Q ss_pred cCCChHHHHHHHHHHHHhccCCc---hHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 003584 348 SNIDLNNAKSVHSLIVKTGFEGY---KFVNNALIDMYAKQGNLDCAFMVFNLM 397 (809)
Q Consensus 348 ~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~ 397 (809)
..|+++.|+.+|+...+..++.- ..+|-.-.++=.+..+++.|+++.+..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 66666666666666655443322 234444445555555566666655543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-07 Score=102.40 Aligned_cols=159 Identities=17% Similarity=0.241 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 003584 486 GCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMD 565 (809)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 565 (809)
+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ .-|...|..++.++++.|.+++-.+++....
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4445555554444433 4699999999999999999988754 2466789999999999999999999997666
Q ss_pred HhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHh
Q 003584 566 KVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQ 645 (809)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (809)
++ .-+|..+ +.|+-+|++.+++.|-.+++. -|+..-......-|...|.++.|.-+|. +.+.|..
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHH
Confidence 55 6666664 468899999999999888763 4788888888999999999999988887 4567888
Q ss_pred HhhhhhhcCChhHHHHHHHHHH
Q 003584 646 LSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
|+..+...|.+..|...-++..
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 8888899999988877665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-11 Score=87.80 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 003584 198 KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAA 247 (809)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 247 (809)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-08 Score=96.04 Aligned_cols=296 Identities=17% Similarity=0.167 Sum_probs=186.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC---chHHHHHHHHHHHhcCCHHHH
Q 003584 314 QGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG---YKFVNNALIDMYAKQGNLDCA 390 (809)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 390 (809)
+.+.++|.++|-+|.+... -+..+-.++-+.+.+.|..+.|..+|+.+.++.--+ -..+.-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5677888888888876421 122334566667778888888888888877652211 122344567778889999999
Q ss_pred HHHHhhcCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhC
Q 003584 391 FMVFNLMQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSG 467 (809)
Q Consensus 391 ~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 467 (809)
+.+|..+.+.+ ......|+..|-+..+|++|++.-+++.+.+-.+..+-..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-------------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-------------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH--------------------------
Confidence 99999887743 3456678888999999999999988888765444332221
Q ss_pred CCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC---eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 003584 468 GCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD---VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY--ITFV 542 (809)
Q Consensus 468 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~ 542 (809)
..|.-|...+.-..+++.|..++.+..+-| +..--.+...+...|++..|++.++...+. .|+. .+..
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~ 253 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLE 253 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHH
Confidence 112223334444567777888887766332 233333455677888889999888888886 3444 4667
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCcCCCCHHHHHHHHHHHHhcCC
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALL-DQMVGEPDATVWKALLSACRVHGD 621 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~-~~m~~~p~~~~~~~ll~a~~~~g~ 621 (809)
.|..+|.+.|+.+++...+.++.+. .+....-..|.+......-.++|...+ +....+|+...+.-|+..-...
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d-- 328 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD-- 328 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc--
Confidence 7888888888888888888777643 334433444444444444444555443 3344456666555444322111
Q ss_pred hhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCce
Q 003584 622 LELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGC 677 (809)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 677 (809)
+..|++.+...+++.|....++..|.+
T Consensus 329 -----------------------------aeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 329 -----------------------------AEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred -----------------------------ccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 123556677777777776666655544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-08 Score=98.46 Aligned_cols=217 Identities=10% Similarity=0.003 Sum_probs=160.9
Q ss_pred HhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 413 AYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 413 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
.-.|+...|.+.|+........++.. |.-+-.+|....+.++..+.|..+.+.+ +.++.+|-.-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 34566777777777776654333332 5455556777777777777777777765 556677777788888899999999
Q ss_pred HHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC
Q 003584 493 RVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG 569 (809)
Q Consensus 493 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 569 (809)
.-|++... .++..|-.+..+..+.+++++++..|++.++. ++.-...|+.....+...+++++|.+.|+... .
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---E 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---h
Confidence 99998874 35567777777777888999999999999986 44445688889999999999999999999876 3
Q ss_pred CCCC-------hH--HHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 570 IKPG-------PD--HYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 570 ~~p~-------~~--~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
+.|+ .. +.-.++- +.-.+++..|.+++++... .| ....+-+|...-.++|+.++|+++|++...+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444 11 1112221 2234899999999999885 34 34589999999999999999999999887654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-11 Score=86.30 Aligned_cols=50 Identities=38% Similarity=0.592 Sum_probs=47.0
Q ss_pred CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003584 501 RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH 550 (809)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 550 (809)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-07 Score=91.06 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=109.6
Q ss_pred HHHHHHHHHhcCC-----CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003584 488 INDANRVFDSMHT-----RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 488 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
+.-|.+.|+-... ..+.--.+|.+.+.-..++++.+..++....- +..|..--..+..|.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 4445555554431 12334456667777777788888887777664 23333333457788888899999998886
Q ss_pred HhHHhhCCCCChHHHH-HHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 563 SMDKVYGIKPGPDHYA-CMIDLLGRSGKLIEAKALLDQMVGEPDATVWK-ALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~~-~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~-~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.+... .+ .+..+|. .|...|.++|+.+-|.+++-++..+.+..+.- .+.+-|.+.+.+--|-++|..+-.++|. +
T Consensus 418 ~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-p 494 (557)
T KOG3785|consen 418 RISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-P 494 (557)
T ss_pred hhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-c
Confidence 65421 22 3445555 45578899999999999998887544555443 4457788999998899999988888884 4
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.|. |+-.....+|..+...
T Consensus 495 EnWe---------GKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 495 ENWE---------GKRGACAGLFRQLANH 514 (557)
T ss_pred cccC---------CccchHHHHHHHHHcC
Confidence 4332 3434445556555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-09 Score=113.74 Aligned_cols=230 Identities=20% Similarity=0.224 Sum_probs=170.4
Q ss_pred hHHHHHHHHHhcccchhHHHHHHHHHHHh-----CC-CCCh-hHHhHHHHHHHhcCCHHHHHHHHHhcCC-------C-C
Q 003584 438 VVVSSILSACAELTVLEFGQQVHAVFLKS-----GG-CSSL-SVDNSLVLVYAKCGCINDANRVFDSMHT-------R-D 502 (809)
Q Consensus 438 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~-~ 502 (809)
.|...+...|...|+++.|.+.++..++. |. .|.+ ...+.+..+|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777766553 21 1222 2234567788899999999988887751 1 1
Q ss_pred ---eeechHHHHHHHhcCChHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhC--C
Q 003584 503 ---VITWTALIMGCAQNGKGKEALQFYDQMLA-----RGTKP-DYI-TFVGLLFACSHAGLAENARWYFESMDKVYG--I 570 (809)
Q Consensus 503 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 570 (809)
..+++.|..+|...|++++|..++++..+ .|..+ +.. .++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 24677788889999999998888877654 23233 332 466777789999999999999987766544 2
Q ss_pred CCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCcCC---------CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc--
Q 003584 571 KPG----PDHYACMIDLLGRSGKLIEAKALLDQMVGE---------PD-ATVWKALLSACRVHGDLELGERAANNLFE-- 634 (809)
Q Consensus 571 ~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m~~~---------p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~-- 634 (809)
.++ ..+|+.|..+|...|+++||.++++++... +. ...++.|..+|.+.++.++|.++|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 368999999999999999999999988731 22 34678899999999999999999987654
Q ss_pred --cCCCC---CccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 635 --LEPMN---AMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 635 --~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
..|++ ..+|..|+.+|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34544 4568899999999999999999988875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-08 Score=98.31 Aligned_cols=278 Identities=14% Similarity=0.082 Sum_probs=173.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003584 314 QGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMV 393 (809)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 393 (809)
.|++.+|.++..+-.+.+..| ...|..-..+.-..|+.+.+-..+.++.+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777766655554333 2334445556666777777777777776664456666777777778888888888877
Q ss_pred HhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh-------HHHHHHHHHhcccchhHHHHHHHHH
Q 003584 394 FNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV-------VVSSILSACAELTVLEFGQQVHAVF 463 (809)
Q Consensus 394 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 463 (809)
.++..+ .++........+|.+.|++.+...++.+|.+.|+--|+. ++..+++-+...+..+.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g-------- 247 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG-------- 247 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH--------
Confidence 776543 577788888899999999999999999999887655432 33333333333222222
Q ss_pred HHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003584 464 LKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYIT 540 (809)
Q Consensus 464 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 540 (809)
-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+..
T Consensus 248 ---------------------------L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~- 299 (400)
T COG3071 248 ---------------------------LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC- 299 (400)
T ss_pred ---------------------------HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH-
Confidence 222333333 2233344455555666677777777776666666555522
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhc
Q 003584 541 FVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVH 619 (809)
Q Consensus 541 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~ 619 (809)
.+-.+.+.++.+.-++..+...+.++-.| ..+.+|..+|.+.+.+.+|.+.|+.... .|+...|+-+..++.+.
T Consensus 300 ---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 300 ---RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL 374 (400)
T ss_pred ---HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 22234455565555555555555444444 4566666677777777777777765553 46666777777777777
Q ss_pred CChhHHHHHHHHHh
Q 003584 620 GDLELGERAANNLF 633 (809)
Q Consensus 620 g~~~~A~~~~~~~~ 633 (809)
|+.+.|.+..++.+
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 77777776666655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-07 Score=99.86 Aligned_cols=442 Identities=17% Similarity=0.100 Sum_probs=247.4
Q ss_pred CCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcch-HH
Q 003584 163 CFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFT-FP 239 (809)
Q Consensus 163 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 239 (809)
.+..|..+|..|.-+..++|+++.+-+.|++.... .....|+.+-..|.-.|.-..|+.+.+.-....-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35678889999999999999999999999875431 3345799999999999999999999887654433344433 33
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhc
Q 003584 240 SILTACA-AVSARDFGAQVHGCILSSG--F--EANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQ 314 (809)
Q Consensus 240 ~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 314 (809)
..-+.|. +.+.+++|...-..++... . ......+-.+.-+|...- ....++. -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HHH
Confidence 3444444 5566777766666655521 0 011112222222221110 0000110 011
Q ss_pred CChhHHHHHHHHHHHCCC-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003584 315 GFHKEALSLFKKMHARDI-KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMV 393 (809)
Q Consensus 315 g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 393 (809)
....++++.+++..+.+. .|+...|.++ -++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 223566777777665432 2333333222 3444556666666666666665556666666666666666666666666
Q ss_pred HhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC
Q 003584 394 FNLMQDK---DVISWTSLITGCAYHGSYEEALKYFSDMRIS--GICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG 468 (809)
Q Consensus 394 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 468 (809)
.+...+. |-+....-+..-..-++.++|+.....+..- ...|-.
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q------------------------------- 584 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ------------------------------- 584 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh-------------------------------
Confidence 5554331 1111111122222345555555555444321 000000
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCe-eechHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CH--
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMH-----TRDV-ITWTALIMGCAQNGKGKEALQFYDQMLARGTKP--DY-- 538 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~-- 538 (809)
..|+-....+.+..+. ..|. .++..+. +..+ -+.+.+..-.. |...-+.| +.
T Consensus 585 ---------------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 585 ---------------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK-LPSSTVLPGPDSLW 646 (799)
T ss_pred ---------------hhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-cCcccccCCCCchH
Confidence 0001111112222211 0111 1111111 1111 01110000000 11111122 21
Q ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCH-HHHHH
Q 003584 539 ----ITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDA-TVWKA 611 (809)
Q Consensus 539 ----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~~ 611 (809)
..+......+...+..++|...+.+.. ++.| ....|......+...|+++||.+.|..... .|+. .+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 123344455677778888877766654 3444 345666777888899999999999887764 5654 48899
Q ss_pred HHHHHHhcCChhHHHH--HHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeE
Q 003584 612 LLSACRVHGDLELGER--AANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSW 679 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 679 (809)
+...+...|+-..|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|.....-.- ..|..+|
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pF 792 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPF 792 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCcccc
Confidence 9999999999888888 99999999999999999999999999999999999998765432 2344444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-08 Score=96.18 Aligned_cols=285 Identities=13% Similarity=0.036 Sum_probs=188.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 003584 213 NGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRL 292 (809)
Q Consensus 213 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 292 (809)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.++.++.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766665333 2335555566667788888888888887775467777778888888888888888776
Q ss_pred Hhc---cCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003584 293 LEY---SEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG 369 (809)
Q Consensus 293 f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 369 (809)
.++ |..++..........|.+.|++.+...++.+|.+.|.--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 654 4566777888888999999999999999999988775433221 111
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHH
Q 003584 370 YKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSA 446 (809)
Q Consensus 370 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 446 (809)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 112344444444444444444556666654 3566667788888899999999999999888877777222 234
Q ss_pred HhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHH
Q 003584 447 CAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQ 524 (809)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 524 (809)
+.+.++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|.+.|+... .|+..+|+-+..+|.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 455566555555555444432 2333566667777777777777776666544 4566666666666666666666666
Q ss_pred HHHHHHH
Q 003584 525 FYDQMLA 531 (809)
Q Consensus 525 l~~~m~~ 531 (809)
.+++...
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 6666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-07 Score=93.81 Aligned_cols=432 Identities=15% Similarity=0.113 Sum_probs=263.8
Q ss_pred HHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 003584 207 ITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSA--LIDMYA--K 282 (809)
Q Consensus 207 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~ 282 (809)
++-+..+|++++|+....++...+ +-|...+..-+-++...+.+++|..+... .+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 456778899999999999998765 34455677777788889999998855432 221 112222 345554 7
Q ss_pred CCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHH
Q 003584 283 CGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDD-FTYPSVLNCFASNIDLNNAKSVHSL 361 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~ 361 (809)
.+..|+|...++.....|......-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-.. ..+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----H
Confidence 799999999999665556556666677888999999999999999877543111 111111111111 0110 1
Q ss_pred HHHhccCCchHHHHH---HHHHHHhcCCHHHHHHHHhhc--------CCCCH----------hHHHHHHHHHHhcCCHHH
Q 003584 362 IVKTGFEGYKFVNNA---LIDMYAKQGNLDCAFMVFNLM--------QDKDV----------ISWTSLITGCAYHGSYEE 420 (809)
Q Consensus 362 ~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~--------~~~~~----------~~~~~li~~~~~~g~~~~ 420 (809)
+......| ..+|.. ..-.+...|++.+|+++++.. .+.|. ..---|.-.+...|+..+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22222222 222322 344577899999999999887 22111 122335556778999999
Q ss_pred HHHHHHHHhhcCCccCHhHHHHH---HHHHhcccchhHH--HHHHHHH-----------HHhCCCCChhHHhHHHHHHHh
Q 003584 421 ALKYFSDMRISGICPDHVVVSSI---LSACAELTVLEFG--QQVHAVF-----------LKSGGCSSLSVDNSLVLVYAK 484 (809)
Q Consensus 421 A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~~~~~~-----------~~~g~~~~~~~~~~li~~y~k 484 (809)
|.+++....... .+|....... |.+...-.++-.+ ...++.. ....-.....--++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999998875 4454332222 2222222222221 1111100 00000111222345566664
Q ss_pred cCCHHHHHHHHHhcCCCC-eeechHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHH
Q 003584 485 CGCINDANRVFDSMHTRD-VITWTALIMGCA--QNGKGKEALQFYDQMLARGTKPDY--ITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~ 559 (809)
+..+.+.++-...+... ...+.+++.... +...+.+|.+++...-+. .|+. +.....+.-....|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45667777777766332 233444444322 233577888888877664 4544 344455556778999999999
Q ss_pred HHH--------HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--------CCC-HHHHHHHHHHHHhcCCh
Q 003584 560 YFE--------SMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--------EPD-ATVWKALLSACRVHGDL 622 (809)
Q Consensus 560 ~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--------~p~-~~~~~~ll~a~~~~g~~ 622 (809)
++. .+.+. +. .+.+...++.+|.+.+.-+-|..++.+... ++. ..+|.-+...-.++|+.
T Consensus 398 il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 44322 33 345566788899998887666666655442 222 22455555555678999
Q ss_pred hHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHH
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (809)
++|...++++++..|++....+.++.+|+.. +.+.|..+-
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 9999999999999999999999999999875 345555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-07 Score=98.40 Aligned_cols=492 Identities=18% Similarity=0.148 Sum_probs=268.0
Q ss_pred ccCChhHHHHHhhhCCC-CCc-chHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHH
Q 003584 79 NSGRLREAKKLFNETPF-KNF-FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFH 156 (809)
Q Consensus 79 ~~g~~~~A~~~f~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 156 (809)
.-|+++.|...++.... |+. ..|-.+...-...|+.--|.+.| +..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHH
Confidence 34666666666665432 333 23544444444444444443333 3445566666666
Q ss_pred HHHH-------HhC-CCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHH
Q 003584 157 GYAI-------KTC-FDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRV 228 (809)
Q Consensus 157 ~~~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 228 (809)
+-.. +.| -..+-+-..+++.+.. ..+.+|+.+|-+-.. -...|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn~------te~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQNA------TEEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhccc------HHHHHHHHHHHHhHHHHHHHHHhc--
Confidence 5432 222 2233334444444443 356777777754322 234566777777888888765432
Q ss_pred CCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHh--ccCCCCeeeHHH
Q 003584 229 EGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLE--YSEIDNEVSWNS 306 (809)
Q Consensus 229 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~--~~~~~~~~~~~~ 306 (809)
|.+.-...-.+-++++...|+-+.|-++- .+.--.-+-|..|.+.|..-.|.+.-. +....|......
T Consensus 584 -~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ 653 (1636)
T KOG3616|consen 584 -GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEH 653 (1636)
T ss_pred -CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHH
Confidence 22211222234455666666655554431 111222456788999999888876642 222345555566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchH-HHHHHHHHHHhcC
Q 003584 307 MIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKF-VNNALIDMYAKQG 385 (809)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g 385 (809)
+..++.+..-+++|=++|+++.. +...+.++.+...+-.|.++-+... +..++ .-...-.-+...|
T Consensus 654 ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~ 720 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIG 720 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHH
Confidence 66777777777777777777642 1223333333333444444433221 11111 1122333455667
Q ss_pred CHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003584 386 NLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK 465 (809)
Q Consensus 386 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 465 (809)
+++.|...|-+... .-..|.+-....+|.+|+.+++.++... .-..-|..+...|++.|+++.|++++...
T Consensus 721 q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-- 791 (1636)
T KOG3616|consen 721 QLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-- 791 (1636)
T ss_pred hHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc--
Confidence 77777776654421 1122345566778888888888877653 22334556667788888888888776542
Q ss_pred hCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC--eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003584 466 SGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD--VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVG 543 (809)
Q Consensus 466 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 543 (809)
..++--|+||.+.|++++|.++-.+...|. +.+|-+-..-+-.+|++.+|.++|-... .|+.
T Consensus 792 -------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~----- 855 (1636)
T KOG3616|consen 792 -------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK----- 855 (1636)
T ss_pred -------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----
Confidence 223456778888888888888877766543 3345444555667777777777764432 3443
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChh
Q 003584 544 LLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLE 623 (809)
Q Consensus 544 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~ 623 (809)
.+..|-+.|..+..+++.+.- .-..-..+...+..-|...|++.+|.+-|-+.. -|.+-++.|...+-++
T Consensus 856 aiqmydk~~~~ddmirlv~k~----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~ 925 (1636)
T KOG3616|consen 856 AIQMYDKHGLDDDMIRLVEKH----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWE 925 (1636)
T ss_pred HHHHHHhhCcchHHHHHHHHh----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHH
Confidence 244566667666666655422 111122344455666777777777777765543 4666666777766666
Q ss_pred HHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 624 LGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
+|-++.+ .....|..-.+...++-+-.| +.|.+++.+
T Consensus 926 dayriak---tegg~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 926 DAYRIAK---TEGGANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHh---ccccccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 6655543 122223333333333333333 455565554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=114.75 Aligned_cols=243 Identities=12% Similarity=0.023 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhhcCCccCHh-HHHHHHHHHh---------cccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCC
Q 003584 418 YEEALKYFSDMRISGICPDHV-VVSSILSACA---------ELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGC 487 (809)
Q Consensus 418 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 487 (809)
.++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46677777776654 45433 2222222221 2234677777777777765 4566777788888999999
Q ss_pred HHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 003584 488 INDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFES 563 (809)
Q Consensus 488 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~ 563 (809)
+++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999876 34 3557888888999999999999999999984 56543 334445556778999999999988
Q ss_pred hHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 564 MDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 564 m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+.+. ..| +...+..+..+|...|+.++|...++++.. .|+.. .++.+...|...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7653 234 445577788899999999999999988764 34433 5666667777777 477777777766432222
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..+..+..+|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2333377788888999988877 7776654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-08 Score=94.15 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=155.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhCCChHHH
Q 003584 213 NGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGF-EA--NVYVQSALIDMYAKCGDLDSA 289 (809)
Q Consensus 213 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~--~~~~~~~Li~~y~~~g~~~~A 289 (809)
+.++++|+++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..++++.- .. -....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468899999999998742 22333445667778899999999999999887531 11 123455677889999999999
Q ss_pred HHHHhccCCCCee---eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc----HHHHHHHhhcCCChHHHHHHHHHH
Q 003584 290 RRLLEYSEIDNEV---SWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFT----YPSVLNCFASNIDLNNAKSVHSLI 362 (809)
Q Consensus 290 ~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~i~~~~ 362 (809)
+.+|..+.+.+.. ....|+..|-+..+|++|+++-+++.+.+.++..+- |.-+........+++.|..++...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999988764433 456688999999999999999999988776655432 333444445556777777777777
Q ss_pred HHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003584 363 VKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVI----SWTSLITGCAYHGSYEEALKYFSDMRIS 431 (809)
Q Consensus 363 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 431 (809)
.+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++....+..+.+.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7654 334444455666777778888888777777765542 4556667777777777777777777664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.8e-09 Score=106.31 Aligned_cols=212 Identities=19% Similarity=0.117 Sum_probs=151.8
Q ss_pred chhHHHHHHHHHHHhC-CCC--ChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSG-GCS--SLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQF 525 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 525 (809)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555555422 222 24557778888999999999999999876 33567899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCC
Q 003584 526 YDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604 (809)
Q Consensus 526 ~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 604 (809)
|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++.....
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 46764 5788888889999999999999998875 34544322222334556788999999997654322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLF-------ELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+...|. ........|+...+ ..++.+. ++.|+.+.+|..++.+|...|++++|...|++..+.+
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223343 22333445665544 2333333 4556677899999999999999999999999988664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-07 Score=90.17 Aligned_cols=302 Identities=11% Similarity=-0.019 Sum_probs=196.9
Q ss_pred CCcccHHHHHHHhh--cCCChHHHHHHHHHHHH-hccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHH--
Q 003584 334 IDDFTYPSVLNCFA--SNIDLNNAKSVHSLIVK-TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSL-- 408 (809)
Q Consensus 334 p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l-- 408 (809)
|+..+...-+.+++ ..++-..+.+.+-.+.. .-++.|+....++.+.|...|+.++|...|++...-|+.+..+|
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 44444444444443 33444444444444433 45677888889999999999999999999998776555443332
Q ss_pred -HHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCC
Q 003584 409 -ITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGC 487 (809)
Q Consensus 409 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 487 (809)
.-.+.+.|+++....+...+.... .-....|-.-+...-...+.+.|..+-+..++.. +.+...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 334567788888777777765432 1111112222222334456666666666665543 2223333223455667788
Q ss_pred HHHHHHHHHhcC--C-CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc-cCCHHHHHHHHH
Q 003584 488 INDANRVFDSMH--T-RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL-FACSH-AGLAENARWYFE 562 (809)
Q Consensus 488 ~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~ 562 (809)
.++|.-.|.... . -+..+|..|+..|...|++.||..+-+...+. +..+..++..+. ..|.. ..--++|.++++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 888888888665 3 47788999999999999999988887776553 333444544442 23332 223467888887
Q ss_pred HhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 563 SMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 563 ~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.-. .+.|+- .....+..++.+.|+.+++..++++... .||....+.|....+..+.+.+|...|..++.++|++-
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 654 556664 4556677888889999999999887765 58888888999999999999999999999999999774
Q ss_pred c
Q 003584 641 M 641 (809)
Q Consensus 641 ~ 641 (809)
.
T Consensus 506 ~ 506 (564)
T KOG1174|consen 506 R 506 (564)
T ss_pred H
Confidence 3
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-05 Score=83.89 Aligned_cols=431 Identities=14% Similarity=0.099 Sum_probs=237.5
Q ss_pred HHhcCCChHHHHHHHHhcCC-----CCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHHHcCCCchhHHH
Q 003584 45 DFSNSGEIDEAGQLFEKMSD-----RDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFE 119 (809)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 119 (809)
....+|++..-++.|++.+. ....+|...+......|-++-+.+++.+-.+-++..-+--|.-+++.++.++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 33455666666666666554 2345677777777777888888888888776666667778888888999999888
Q ss_pred HHHHHHHcC------CCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCC--Cc--hHHHHHHHHhhhcCCChhHHHH
Q 003584 120 LFWQMQLEG------YRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFD--LN--AFVVTGLVDMYAKCKCIFEAEY 189 (809)
Q Consensus 120 ~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~y~~~g~~~~A~~ 189 (809)
.+....... -+-+...|.-+-...++..+.-....+ +.+++.|+. +| .+.|++|.+-|.+.|.++.|+.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 887765322 122333455555555555444333332 334444432 22 4789999999999999999999
Q ss_pred HhhhCCCC-CCcccHHHHHHHHhhC----------------CC------hHHHHHHHHHHHHCCC----------CC-Cc
Q 003584 190 LFKMFPDG-KNHVAWTTMITGYSQN----------------GY------GFKAIECFRDMRVEGV----------ES-NQ 235 (809)
Q Consensus 190 ~f~~~~~~-~~~~~~~~li~~~~~~----------------g~------~~~A~~l~~~m~~~g~----------~p-~~ 235 (809)
+|++.... -.+.-++.+-+.|++- |+ ++-.+.-|+.+...+. .| +.
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 99875431 2233344444444332 11 1122222333322210 01 11
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCee-------e
Q 003584 236 FTFPSILTACAAVSARDFGAQVHGCILSSGF-----EANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEV-------S 303 (809)
Q Consensus 236 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-------~ 303 (809)
.+|..-.. ...|+..+-...+.++++.-- ..-...|..+.+.|-..|+++.|+.+|++...-+-. .
T Consensus 350 ~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 11211111 123445555566666665321 112345777888888888888888888876543322 3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 003584 304 WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAK 383 (809)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 383 (809)
|..-...=.+..+++.|+.+.++... .|.... + .+...+..-++ .+..+..+|...++.--.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~----------rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA----------RLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH----------HHHHhHHHHHHHHHHHHH
Confidence 44444445556667777776665543 233221 1 11112221111 112345567777777778
Q ss_pred cCCHHHHHHHHhhcCCCCHhHHHHH---HHHHHhcCCHHHHHHHHHHHhhcCCccCHh-HHHHHHHHHh---cccchhHH
Q 003584 384 QGNLDCAFMVFNLMQDKDVISWTSL---ITGCAYHGSYEEALKYFSDMRISGICPDHV-VVSSILSACA---ELTVLEFG 456 (809)
Q Consensus 384 ~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~~~~~~a 456 (809)
.|-++....+++.+.+--+.|=... ..-+-.+.-++++.+++++-...=--|+.. .|++.|.-+. ....++.+
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8889999999988876322221111 112334556788888887655432234432 3444444332 23457777
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHHHHHh----cCCHHHHHHHHHhcC
Q 003584 457 QQVHAVFLKSGGCSSLSVDNSLVLVYAK----CGCINDANRVFDSMH 499 (809)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~ 499 (809)
+.+|+++++ |.+|. ...++--.|++ -|....|.+++++..
T Consensus 570 RdLFEqaL~-~Cpp~--~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPE--HAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHh-cCCHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888887777 44432 22223333433 355555555555543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-05 Score=89.18 Aligned_cols=438 Identities=13% Similarity=0.102 Sum_probs=232.4
Q ss_pred HHHHHHHHHccCChhHHHHHhhhCCC-CCcchHHHH-----HHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHh
Q 003584 70 WNTMIAAYANSGRLREAKKLFNETPF-KNFFTWSSL-----IYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLC 143 (809)
Q Consensus 70 ~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 143 (809)
+..+.+.|.++|-+..|++.+..+.. +-++.-+.+ +..|.-.-.++++++.+..|...+++-|..+...+..-+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55677788899999999998877653 111111111 224445557889999999999988888877655555444
Q ss_pred hcCCCchHHHHHHHHHHH-----------hCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC----------------
Q 003584 144 SLKGLLQRGEQFHGYAIK-----------TCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD---------------- 196 (809)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------------- 196 (809)
...-..+...++++.... -.+..|+.+.-..|.+-++.|++.+.+++-++-..
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 333333333333333221 13456777888899999999999999887653221
Q ss_pred -C-------------CCcccH------HHHHHHHhhCCChHHHHHHHHHHHHCCCCC-----------CcchHHHHHHHH
Q 003584 197 -G-------------KNHVAW------TTMITGYSQNGYGFKAIECFRDMRVEGVES-----------NQFTFPSILTAC 245 (809)
Q Consensus 197 -~-------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~~~ 245 (809)
+ +|.+.| --.|..|++.-++...-.+.-.+......- ..+...-+..-+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 0 011111 122444554433333222222222111100 011122233344
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHH-H---------------------------------
Q 003584 246 AAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSAR-R--------------------------------- 291 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~--------------------------------- 291 (809)
.+.+++..-...++..+..| ..|+.++|+|...|...++-.+-. +
T Consensus 849 EkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 55666777777778888888 558888999888876554322110 0
Q ss_pred ----------HHhc-----cCCC--------------------------------CeeeHHHHHHHHHhcCChhHHHHHH
Q 003584 292 ----------LLEY-----SEID--------------------------------NEVSWNSMIVGFARQGFHKEALSLF 324 (809)
Q Consensus 292 ----------~f~~-----~~~~--------------------------------~~~~~~~li~~~~~~g~~~~A~~~~ 324 (809)
+|.. .... |+..-..-+.++...+-+.+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0000 0001 1122233334455555555555555
Q ss_pred HHHHHCCCCCC-cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----
Q 003584 325 KKMHARDIKID-DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---- 399 (809)
Q Consensus 325 ~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---- 399 (809)
+++.-.+-..+ ...+-.++-.-+-..+.....+....+-... . -.+.......+-+++|..+|+...-
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a------~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-A------PDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-c------hhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 55542211000 0001111111111111111111111111100 0 0112222333334444444443221
Q ss_pred ---------------------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHH
Q 003584 400 ---------------------KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQ 458 (809)
Q Consensus 400 ---------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 458 (809)
..+..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-..
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 13457888888888889988888877543 366788899999999999999888
Q ss_pred HHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 459 VHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 459 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.+..+.+..-.|.+ -+.||-+|+|.+++.+-++++. -||+.....+.+-|...|.++.|.-+|
T Consensus 1155 yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 88888777666554 4678888999888887666542 344444444444455555555444444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=97.20 Aligned_cols=227 Identities=15% Similarity=0.106 Sum_probs=141.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcC
Q 003584 407 SLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCG 486 (809)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 486 (809)
.|..+|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+...++.|..++..-++. ++.++....-....+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555554443 233334444444444444444444333333221 1222222233344455556
Q ss_pred CHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003584 487 CINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFES 563 (809)
Q Consensus 487 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 563 (809)
+.++|.+++....+ .++.+..++..+|...++++-|+..|+++++.|+. +...|..+.-+|.-.++++-+..-|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666665542 34555566666677777777777777777776643 445566666666666666666555544
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 564 MDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPD--ATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 564 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~--~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
.... +. .|+ ..+|-.|.......||+..|.+.|+-++..+|++..
T Consensus 384 Alst--------------------------------at-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 384 ALST--------------------------------AT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHhh--------------------------------cc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 4321 11 233 347888888889999999999999999999999999
Q ss_pred cHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+++.|+-+-.+.|+.++|..++...++..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-08 Score=96.89 Aligned_cols=197 Identities=19% Similarity=0.181 Sum_probs=118.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHH
Q 003584 402 VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLV 481 (809)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 481 (809)
...+..+...|...|++++|.+.+++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4567777788888888888888888776542 32 12233334444
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 003584 482 YAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENA 557 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a 557 (809)
|...|++++|.+.|++.. +.+...+..+...+...|++++|.+.|++.......| +...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443 2233445555566666666777777766666532222 223455556666777777777
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 558 RWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 558 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
...++...+. .+.+...+..+...+...|++++|...+++... +.+...+..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777666542 122345566677777777777777777766543 234455666667777777777777776666554
Q ss_pred C
Q 003584 636 E 636 (809)
Q Consensus 636 ~ 636 (809)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-07 Score=92.49 Aligned_cols=276 Identities=16% Similarity=0.068 Sum_probs=151.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCH
Q 003584 308 IVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNL 387 (809)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 387 (809)
..-+...+++.+..++++...+.. ++....+..-|.++...|+...-..+-..+++. .|..+.+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 344445556666666666655542 233334444444555555544444443444433 255666777777778788888
Q ss_pred HHHHHHHhhcCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CC-ccCHhHHHHHHHHHhcccchhHHHHHHH
Q 003584 388 DCAFMVFNLMQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRIS--GI-CPDHVVVSSILSACAELTVLEFGQQVHA 461 (809)
Q Consensus 388 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 461 (809)
.+|++.|.....-| ...|-.+...|+-.|..++|+..+...-+. |. .|. - -+---|...++++.|.+.+.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--L--Ylgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--L--YLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--H--HHHHHHHHhccHHHHHHHHH
Confidence 88888888765433 357888889999999999998888766542 21 111 1 11122445556666666665
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003584 462 VFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITF 541 (809)
Q Consensus 462 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 541 (809)
++.... +.|+.+.+-+.-++-..+.+.+|...|+....+ .+....+ ..--..++
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~~w~p~~ 458 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KIFWEPTL 458 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-ccchhHHH
Confidence 554433 344555555544444445555555555433200 0000000 00012345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHH
Q 003584 542 VGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACR 617 (809)
Q Consensus 542 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~ 617 (809)
+.|..+|.+.+..++|+..|+.... -.+.+..+|+++.-.|...|+++.|.+.|.+... +||..+-..++..+.
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 5666666666666666666665543 2333555666666666666666666666666553 466555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=92.51 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=138.4
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLL 584 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 584 (809)
..|.-+|.+.|+...|.+-+++.++. .|+. .++..+...|...|..+.|.+.|+... .+.|+ ..+.|....-+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 44667888999999999999999884 5665 488888889999999999999998876 45564 46777888889
Q ss_pred hhcCCHHHHHHHHHhCcCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 585 GRSGKLIEAKALLDQMVGEPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 585 ~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
+..|++++|...|++....|+ ..+|..++....+.|+.+.|+..+++.++++|+.+.+...+.....+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999887654 3489999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 003584 661 RVRKLMKSRGI 671 (809)
Q Consensus 661 ~~~~~m~~~~~ 671 (809)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999887654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-05 Score=85.79 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=53.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHH
Q 003584 309 VGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLD 388 (809)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 388 (809)
.+-....++.+|+.+++.++.... -.--|..+..-|+..|+++.|+++|... ..++--|+||.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344555666666666666655422 2233455555566666666666555432 12344455566666666
Q ss_pred HHHHHHhhcCCC--CHhHHHHHHHHHHhcCCHHHHHHHH
Q 003584 389 CAFMVFNLMQDK--DVISWTSLITGCAYHGSYEEALKYF 425 (809)
Q Consensus 389 ~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 425 (809)
+|.++-.+...| ....|-+-..-+-.+|++.+|.+++
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 665555554433 2223333333344445555544444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-07 Score=100.67 Aligned_cols=232 Identities=16% Similarity=0.184 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC----------CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCccC----
Q 003584 375 NALIDMYAKQGNLDCAFMVFNLMQD----------KDVI-SWTSLITGCAYHGSYEEALKYFSDMRIS---GICPD---- 436 (809)
Q Consensus 375 ~~li~~y~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~---- 436 (809)
..|..+|...|+++.|..+|....+ +.+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3355555555555555555544322 1111 1223445566666666666666666541 11122
Q ss_pred HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCee-echHHHHH
Q 003584 437 HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVI-TWTALIMG 512 (809)
Q Consensus 437 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~-~~~~li~~ 512 (809)
..++..+-.+|.+.|++++|+..+..+.+ ++++.. .+++. ..+.++..
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHHHHH
Confidence 22344444456666666666666554432 111110 11111 12333444
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhh-----CCCCC-hHHHHH
Q 003584 513 CAQNGKGKEALQFYDQMLAR---GTKPDY----ITFVGLLFACSHAGLAENARWYFESMDKVY-----GIKPG-PDHYAC 579 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~ 579 (809)
+...+++++|..++++..+. -..++. .++..|...|.+.|++++|.++|+++.+.. +..+. ..+++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 55555555555555544331 112222 256667777777777777777776665432 11222 345667
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcC--------CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG--------EPDAT-VWKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 580 li~~~~~~g~~~eA~~~~~~m~~--------~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
|...|.+.++.++|.++|.+... .|+.. +|..|...|...|+++.|+++.+++..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77778888888877777766542 35554 899999999999999999999988763
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-08 Score=110.60 Aligned_cols=210 Identities=12% Similarity=0.000 Sum_probs=162.6
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHh---------cCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCCh
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAK---------CGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKG 519 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 519 (809)
+++.|...+..+++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4567888888887764 3344556556555442 3458899999998773 3566788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHH
Q 003584 520 KEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKLIEAKALL 597 (809)
Q Consensus 520 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~ 597 (809)
++|+..|++..+. .|+. ..+..+..++...|++++|...++...+ +.|+.. .+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999985 5664 5788888899999999999999998874 456532 2334445567789999999999
Q ss_pred HhCcC--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 598 DQMVG--EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 598 ~~m~~--~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++... .|+ +..+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 88764 254 4467888888999999999999999998888888888888888888888 4888877776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-05 Score=82.68 Aligned_cols=374 Identities=15% Similarity=0.139 Sum_probs=180.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHH
Q 003584 242 LTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEAL 321 (809)
Q Consensus 242 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (809)
-.-+...|+.+.|..+|..... |-++++..|-.|+.++|.++-++- .|......+...|-..|++.+|.
T Consensus 919 gqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 919 GQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred HHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHH
Confidence 3344466777777777765432 445666666677777777766543 34455556666777777777777
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhhcCCC---------------hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCC
Q 003584 322 SLFKKMHARDIKIDDFTYPSVLNCFASNID---------------LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGN 386 (809)
Q Consensus 322 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 386 (809)
.+|.+.+. |...|+.|-..+- .-.|...+++ .|.. ..--+..|-|.|.
T Consensus 988 ~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen 988 KFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGM 1050 (1416)
T ss_pred HHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcc
Confidence 77766542 3333433322221 1112222221 1211 1223445777787
Q ss_pred HHHHHHHHhhcCC--------------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccc
Q 003584 387 LDCAFMVFNLMQD--------------KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTV 452 (809)
Q Consensus 387 ~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 452 (809)
+.+|+++-=+-.+ .|+...+--..-++.+.++++|..++-..++ |.-.+..|...+
T Consensus 1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n- 1120 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN- 1120 (1416)
T ss_pred hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-
Confidence 7777765322211 3555555556667777788888877765543 333444443322
Q ss_pred hhHHHHHHHHHH--HhCCCC---ChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHH------
Q 003584 453 LEFGQQVHAVFL--KSGGCS---SLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKE------ 521 (809)
Q Consensus 453 ~~~a~~~~~~~~--~~g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------ 521 (809)
+.-..++-+.|. +.+.++ -..+...+.+.+.++|.+..|-+-|.+...+ -.-+.++.+.|+.++
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn 1195 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFAN 1195 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEee
Confidence 222222222221 111111 1234455666777777777777666554321 011233333333332
Q ss_pred ----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 003584 522 ----------ALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLI 591 (809)
Q Consensus 522 ----------A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (809)
|-.+++ ....+.|+.+...++.-|.+...++.--.+|....+ ...+.|..+-. ..|-++
T Consensus 1196 ~sRqkEiYImAANyLQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydK---a~gAl~ 1264 (1416)
T KOG3617|consen 1196 TSRQKEIYIMAANYLQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDK---AMGALE 1264 (1416)
T ss_pred ccccceeeeehhhhhh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhH---HhHHHH
Confidence 111111 112333444444444333333333322222221111 01112211111 124455
Q ss_pred HHHHHHHhCcCCCCHH-HHHHH----------HHHHHhcC-ChhHHHHHHHHHhccCCCCC------ccHHhHhhhhhhc
Q 003584 592 EAKALLDQMVGEPDAT-VWKAL----------LSACRVHG-DLELGERAANNLFELEPMNA------MPYVQLSNMYSTA 653 (809)
Q Consensus 592 eA~~~~~~m~~~p~~~-~~~~l----------l~a~~~~g-~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~ 653 (809)
+|.+.+.+...+.+.. .++.| +....... |..+.+.-.+-+++ +|..+ ..|..|+..|...
T Consensus 1265 eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~ 1343 (1416)
T KOG3617|consen 1265 EAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSR 1343 (1416)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhh
Confidence 6666655554332222 22222 22222211 34444444444443 33322 3577899999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 003584 654 GKWEDAARVRKLMKSRG 670 (809)
Q Consensus 654 g~~~~A~~~~~~m~~~~ 670 (809)
.+|..|.+.++.|..+.
T Consensus 1344 k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1344 KNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhccHHHHHHHHHhhcC
Confidence 99999999999998663
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-05 Score=80.45 Aligned_cols=261 Identities=12% Similarity=0.014 Sum_probs=150.7
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCC-h-HH-------------HHHHHHHHHHCC-
Q 003584 167 NAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGY-G-FK-------------AIECFRDMRVEG- 230 (809)
Q Consensus 167 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~-~-~~-------------A~~l~~~m~~~g- 230 (809)
+...-.-.+..|-..++-+.|.....+.|......--|.|+.-+.+.|. . ++ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 4444455666777778888888888888874444445555544444331 1 11 112221122222
Q ss_pred --------------CCCCcchHHHHHHHHhc--cCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 003584 231 --------------VESNQFTFPSILTACAA--VSARDFGAQVHGCILS-SGFEANVYVQSALIDMYAKCGDLDSARRLL 293 (809)
Q Consensus 231 --------------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 293 (809)
+.|+..+...-+.+++. .++-..+-+.+-.+.. .-++.|+.....+.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 23444444444444432 2333333333333332 336778888889999999999999999999
Q ss_pred hccCCCCeeeHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCc
Q 003584 294 EYSEIDNEVSWNSM---IVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370 (809)
Q Consensus 294 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 370 (809)
++...-|+.+...| .-.+.+.|+++....+...+.... +-+...|..-+...-..++++.|..+-+..++.. +.+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 87665444433332 333456788887777777765431 1122223333333445566667766666665543 222
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003584 371 KFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMR 429 (809)
Q Consensus 371 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 429 (809)
...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|.+.||.-+-+...
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 22333233456677888888888877553 367788888888888888888877665544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-07 Score=94.16 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=124.9
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHH
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEA 522 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A 522 (809)
.+...|+.+.|...+..+++.. +.+...++.+...|...|++++|.+.|++.. .| +..+|..+...+...|++++|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555555554443 3456777888888999999999999998875 33 456788888889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH--HHHHHHHhC
Q 003584 523 LQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLI--EAKALLDQM 600 (809)
Q Consensus 523 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--eA~~~~~~m 600 (809)
++.|++..+. .|+..........+...++.++|...|..... ...|+...+ .++..+ .|++. ++.+.+.+.
T Consensus 152 ~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~ 224 (296)
T PRK11189 152 QDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAG 224 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhc
Confidence 9999999884 56544222222234556789999999976543 333433222 333333 44443 333333322
Q ss_pred cCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 601 VGE------PDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 601 ~~~------p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
... ....+|..+...+...|+.++|+..|+++++++|.+.
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 111 2335899999999999999999999999999997543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00012 Score=77.17 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=29.2
Q ss_pred HHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003584 581 IDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANN 631 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~ 631 (809)
+..-.|.|+-++|..+++++.. ++|..+...++.+|+.- |.+.|+.+-.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 3334455777777777776664 35555666666666654 35555554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00011 Score=79.89 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=119.1
Q ss_pred HhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHH
Q 003584 364 KTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVV 440 (809)
Q Consensus 364 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 440 (809)
...+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+.+.-....-.|+..+.
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344567888889898899999999999999988764 34567888888898889888888888876654334544444
Q ss_pred HHHHH-HH-hcccchhHHHHHHHHHHHhC--C--CCChhHHhHHHHHHHhc-----------CCHHHHHHHHHhcCCC--
Q 003584 441 SSILS-AC-AELTVLEFGQQVHAVFLKSG--G--CSSLSVDNSLVLVYAKC-----------GCINDANRVFDSMHTR-- 501 (809)
Q Consensus 441 ~~ll~-a~-~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~~~-- 501 (809)
..+.. .| .+.+.+++|..+-..++... . ......+-.+.-+|... ....++.+.+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333 23 34466666666655555411 1 11222333333333321 1123445555554322
Q ss_pred -CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC
Q 003584 502 -DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG 569 (809)
Q Consensus 502 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 569 (809)
|....--+.--|+..++.+.|++..++..+.+-.-+...+..+.-.++..+++.+|..+.+.....+|
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 11111112223555666666666666666654444555555555555566666666665555444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-05 Score=81.96 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVGE-PDAT-VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
+-.++..+-+.|+++.|..+++..... |..+ .|..-...+...|+.+.|-..++++.+++-.|...-..-++-..++.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc
Confidence 345677778888888888888877752 5544 55555677788888888888888888887555444334555666778
Q ss_pred ChhHHHHHHHHHHhCCC
Q 003584 655 KWEDAARVRKLMKSRGI 671 (809)
Q Consensus 655 ~~~~A~~~~~~m~~~~~ 671 (809)
+.++|.++.......|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 88888888777766553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-05 Score=78.99 Aligned_cols=123 Identities=18% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHH
Q 003584 540 TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSAC 616 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~ 616 (809)
|+.-+...+-..|+++.|..+.+... +..|+. +.|..-..++..+|.+++|..++++... .||..+-.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 44455566777777777777777655 445553 5555556677777777777777776653 24444333333444
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCc--------cHH--hHhhhhhhcCChhHHHHHHHHH
Q 003584 617 RVHGDLELGERAANNLFELEPMNAM--------PYV--QLSNMYSTAGKWEDAARVRKLM 666 (809)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~--------~~~--~l~~~~~~~g~~~~A~~~~~~m 666 (809)
.+.++.++|.+++.+...-+- +.. .|. -=+.+|.+.|+|.+|.+-+..+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~-~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF-GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhccc-chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 556667777777666544332 111 111 2245677777777776655444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-05 Score=88.19 Aligned_cols=183 Identities=13% Similarity=-0.020 Sum_probs=111.5
Q ss_pred HHHHHhcCCChHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHHHhhhCCCC---CcchHHHHHHHHHcCCCch
Q 003584 42 ALVDFSNSGEIDEAGQLFEKMSDRDG---FTWNTMIAAYANSGRLREAKKLFNETPFK---NFFTWSSLIYGYSNYGLDI 115 (809)
Q Consensus 42 ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 115 (809)
.+..|.+.. ...|...|-+..+-|+ ..|..|-.-|...-+...|.+.|+..-+- +..+|-....-|++...++
T Consensus 465 ~a~~~~rK~-~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 465 VALGCMRKN-SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHhhhh-HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHH
Confidence 344454433 5555555555544443 46777777787777777888888865543 4467778888888888888
Q ss_pred hHHHHHHHHHHcCC-CCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhC
Q 003584 116 EAFELFWQMQLEGY-RPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMF 194 (809)
Q Consensus 116 ~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 194 (809)
+|..+.-.--+... ..-...|..+--.+...+....+..-++...+.. +.|...|..|..+|.++|++..|.++|++.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 88877333222110 0000111111112333344444444444444443 447788999999999999999999999887
Q ss_pred CCCCCcccHHHH---HHHHhhCCChHHHHHHHHHHH
Q 003584 195 PDGKNHVAWTTM---ITGYSQNGYGFKAIECFRDMR 227 (809)
Q Consensus 195 ~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~ 227 (809)
.. -++.+|-.- ....+..|.+.+|++.+....
T Consensus 623 s~-LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 623 SL-LRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred Hh-cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 76 444443322 223466788899988887765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-06 Score=81.64 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=119.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 003584 478 LVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGK-------GKEALQFYDQMLARGTKPDYI-TFVGLLFACS 549 (809)
Q Consensus 478 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~ 549 (809)
|+--|.+.+++.+|..+..+.....+.-|-.-...++.+|+ ..-|.+.|+-.-+++..-|.+ --.++.+++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 44557888899999888887764433322211112333332 344555565555556555554 3445666666
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC--CCHHHHHHHHHHH-HhcCChhHHH
Q 003584 550 HAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE--PDATVWKALLSAC-RVHGDLELGE 626 (809)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~a~-~~~g~~~~A~ 626 (809)
-..++++.+.++.++..- -...|...+ .+..++...|...+|.++|-++..+ .|..+|.+++.-| ...+..+.|.
T Consensus 371 L~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 777888888888887642 333333333 4678888889999999998877642 4667777776555 4556677665
Q ss_pred HHHHHHhccC-CCCC-ccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 627 RAANNLFELE-PMNA-MPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 627 ~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
.+ ++..+ |.+. .....+++-|.+++.+--|.+.|+.+...+.
T Consensus 449 ~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 449 DM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 54 44443 3222 2344667888899988888888887765543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-05 Score=84.41 Aligned_cols=45 Identities=27% Similarity=0.234 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 621 DLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
=+++|.+.++-+.+..|++..+|..--.+|.+.|++--|.+.+.+
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 378899999999999999999999999999999999998877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=88.85 Aligned_cols=223 Identities=15% Similarity=0.076 Sum_probs=173.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHH-HHHHHhccc
Q 003584 375 NALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSS-ILSACAELT 451 (809)
Q Consensus 375 ~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~ 451 (809)
+-+...|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+..++..|+.+|.+-.+. .|-.+||.. +.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888888999999888887654 56778888888999999999999999887764 677777654 445677788
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQ 528 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 528 (809)
..+.+.++++.+.+.. +.++....++...|.-.++++.|...+.++.+ .+...|+.+.-+|...++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8899999999888865 45666666777788888999999999988763 4667788888888889999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 529 MLARGTKPDYI--TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 529 m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
.+..--.|+.. .|-.+.......|++..|.+.|+.... .-..+.+.++.|.-+-.|.|++++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88865556653 566677777778888888888876653 2333457778887778888888888888876653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-06 Score=77.39 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=114.5
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLF 546 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 546 (809)
+..++..+...|.+.|+.+.|.+-|++.. ..+-...|....-+|..|++++|...|++....-.-|.. .||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 34445556666777777777777777654 334556666777777788888888888887764333332 47777777
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChh
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLE 623 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~ 623 (809)
+..+.|+.+.|..+|++..+ +.|+ ......|.......|++-.|..+++.... .++..+....+..-...||.+
T Consensus 148 Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 77778888888888877663 2333 35566777777888888888888877664 356666666667777788887
Q ss_pred HHHHHHHHHhccCCCCCc
Q 003584 624 LGERAANNLFELEPMNAM 641 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~ 641 (809)
.+-+.-.++...-|.+..
T Consensus 225 ~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 225 AAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHHhCCCcHH
Confidence 777776677777776543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-05 Score=85.20 Aligned_cols=563 Identities=13% Similarity=0.004 Sum_probs=291.3
Q ss_pred hhHHHHHhhhCCCCCc---chHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCC-cccHHHHHHHhhcCCCchHHHHHHHH
Q 003584 83 LREAKKLFNETPFKNF---FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPS-QYTLDNVLRLCSLKGLLQRGEQFHGY 158 (809)
Q Consensus 83 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 158 (809)
...|...|-+....|+ ..|..|..-|...-+...|...|+...+-+ |+ ......+...++...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4455555544433333 468888888877777778888888887632 33 23455566788888888888887221
Q ss_pred HHHhC-CCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC--CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCc
Q 003584 159 AIKTC-FDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD--GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ 235 (809)
Q Consensus 159 ~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 235 (809)
.-+.. ...-..-|-.+--.|.+.++...|..-|+..-. +.|..+|..+..+|.+.|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 11111 001112222233356677888888888876543 25788999999999999999999999988765 34542
Q ss_pred chHHHHHHH--HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hCCChHHHHHHHhccCC--------
Q 003584 236 FTFPSILTA--CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYA-------KCGDLDSARRLLEYSEI-------- 298 (809)
Q Consensus 236 ~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-------~~g~~~~A~~~f~~~~~-------- 298 (809)
+|.....+ -+..|.+.++...++.++..- ..-....+.|...+. -.|-...|...|+.-.+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33333222 346788888888888877542 111222233333333 23333444444432111
Q ss_pred ---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH-----hccCCc
Q 003584 299 ---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK-----TGFEGY 370 (809)
Q Consensus 299 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-----~g~~~~ 370 (809)
.+...|-.+ ..|..+|-... .+ .|+......+..-.-..+....-. ++-...+ ..+..+
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~ 774 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIH 774 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhc
Confidence 111222222 12233333322 00 122111111111122222220000 1000001 111222
Q ss_pred hHHHHHHHHHHHh----cC----CHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhH
Q 003584 371 KFVNNALIDMYAK----QG----NLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVV 439 (809)
Q Consensus 371 ~~~~~~li~~y~~----~g----~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 439 (809)
...|..|...|.+ +| +...|...+....+ .+...||.|.-. ...|.+.-|...|-+-.... +-...+
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 3333333333332 22 22345555554432 566777776554 55566666666665554432 234556
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--------CCCeeechHHHH
Q 003584 440 VSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--------TRDVITWTALIM 511 (809)
Q Consensus 440 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 511 (809)
|..+--.|....+++.|.+.+...+... +.+..-|-...-.-...|+.-++..+|..-. -++..-|-.-..
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 6666666777777888877777766543 2333333332333345566666666665421 134444444444
Q ss_pred HHHhcCChHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH----
Q 003584 512 GCAQNGKGKEALQFYDQMLA---------RGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA---- 578 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---- 578 (809)
-..++|+.++-+..-+++-. .|.+-+...|........+.+..++|.....+...-...+-+...|+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 45566665554443333221 12333445777777777777777776666555432211222333333
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc---cHHhHhhhhhhcCC
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM---PYVQLSNMYSTAGK 655 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 655 (809)
....++...|.++.|..-+.....+-|..+-.+-+.. .-.|+++.+++.|++++.+-.++.. ....++.....+|.
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 2334455567777766666555444344333333332 4457788888888888776433322 23344555566777
Q ss_pred hhHHHHHHHHHHh
Q 003584 656 WEDAARVRKLMKS 668 (809)
Q Consensus 656 ~~~A~~~~~~m~~ 668 (809)
-+.|...+-+.+.
T Consensus 1091 k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKS 1103 (1238)
T ss_pred chHHHHHHHHHHH
Confidence 7777766555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=89.31 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=75.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHH
Q 003584 480 LVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH----AGLAE 555 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~ 555 (809)
.+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHH
Confidence 3455567777777666554 23334444566677777777777777777652 3333 23333333221 22455
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHH
Q 003584 556 NARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDL-ELGERAANNL 632 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~-~~A~~~~~~~ 632 (809)
+|..+|+++.+ ...+++...+.+..+....|+++||.+++.+... .| |+.++-.++......|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66666666543 2334445555555555555555555555554433 12 233444454444444544 3344455555
Q ss_pred hccCCCC
Q 003584 633 FELEPMN 639 (809)
Q Consensus 633 ~~~~p~~ 639 (809)
....|++
T Consensus 263 ~~~~p~h 269 (290)
T PF04733_consen 263 KQSNPNH 269 (290)
T ss_dssp HHHTTTS
T ss_pred HHhCCCC
Confidence 5555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00016 Score=78.58 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.+..|+..+....++..|-++++.+....|.
T Consensus 1332 ~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1332 LFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 5666777777777777777777777666664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0013 Score=79.93 Aligned_cols=362 Identities=12% Similarity=0.003 Sum_probs=174.0
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCeee--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHH
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEVS--WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNN 354 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 354 (809)
...|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555666666666555444332111 111122344567777666666655221111122222233334456677777
Q ss_pred HHHHHHHHHHhccC------Cc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCH----hHHHHHHHHHHhcCCH
Q 003584 355 AKSVHSLIVKTGFE------GY--KFVNNALIDMYAKQGNLDCAFMVFNLMQD----KDV----ISWTSLITGCAYHGSY 418 (809)
Q Consensus 355 a~~i~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~ 418 (809)
+...+..+...--. +. ......+...+...|++++|...+++..+ .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 77776665442100 01 11112223344556666666666655322 111 2234444455556666
Q ss_pred HHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCC-CChhHHhHHHHHHHhcCCHHHHHHHHHh
Q 003584 419 EEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGC-SSLSVDNSLVLVYAKCGCINDANRVFDS 497 (809)
Q Consensus 419 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~ 497 (809)
++|...+.+.....-. .|.. ........+...+...|++++|...+++
T Consensus 508 ~~A~~~~~~al~~~~~-------------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 508 ARALAMMQQTEQMARQ-------------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHHHHHHHHHHHhh-------------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666655432100 0000 0011222333344445555555544443
Q ss_pred cCC-------CC----eeechHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 003584 498 MHT-------RD----VITWTALIMGCAQNGKGKEALQFYDQMLAR--GTKPD--YITFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 498 ~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
... ++ ...+..+...+...|++++|...+++.... ...|. ..++..+.......|+.++|...++
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 220 00 011223333445556677776666665432 11121 1233334455666777777777666
Q ss_pred HhHHhhCCCCChHHH-----HHHHHHHhhcCCHHHHHHHHHhCcCC--CCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 003584 563 SMDKVYGIKPGPDHY-----ACMIDLLGRSGKLIEAKALLDQMVGE--PDA----TVWKALLSACRVHGDLELGERAANN 631 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~m~~~--p~~----~~~~~ll~a~~~~g~~~~A~~~~~~ 631 (809)
..............+ ......+...|+.+.|..++...... ... ..+..+..++...|+.++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654321111110001 01123344567777777777665431 111 1134566667777888888888777
Q ss_pred HhccC------CCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 632 LFELE------PMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 632 ~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+++.. +....++..++.+|...|+.++|...+.+..+.
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76542 112235667777888888888888888777654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-07 Score=94.44 Aligned_cols=216 Identities=16% Similarity=0.138 Sum_probs=149.3
Q ss_pred cchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHH
Q 003584 451 TVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 451 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
|++..|.-.++..++.. +.+...|.-|....+..++-..|+..+.+..+ .|....-+|...|...|.-.+|++.++
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444443333 33445555555555556666666666665553 234455556666777777777887777
Q ss_pred HHHHCCCCCCHHHHHHH--------HHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003584 528 QMLARGTKPDYITFVGL--------LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQ 599 (809)
Q Consensus 528 ~m~~~g~~pd~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 599 (809)
.-+... |...-...- -........+....++|-.+....+..+|+.++.+|.-+|--.|.++.|.+.|+.
T Consensus 378 ~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 765421 110000000 0112222334455566666665557668889999999999999999999999998
Q ss_pred CcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 600 MVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 600 m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.. +| |..+||-|+..+....+.++|+.+|++++++.|.-..+.+.|+-.|...|.++||.+.|-.....
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 875 45 55699999999999999999999999999999999999999999999999999999998876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-05 Score=86.61 Aligned_cols=280 Identities=15% Similarity=0.099 Sum_probs=150.9
Q ss_pred HHhcCCHHHHHHHHhhcCC--CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHh----c--cc
Q 003584 381 YAKQGNLDCAFMVFNLMQD--KDVI-SWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACA----E--LT 451 (809)
Q Consensus 381 y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~--~~ 451 (809)
+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+. .|+...|...+..|. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4555666666666655433 2333 2334445566666666666666666665 355555555554443 1 11
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHH-HHHHHHHhcCCCCe-eechHHHHHHHhcCChHHHHHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIN-DANRVFDSMHTRDV-ITWTALIMGCAQNGKGKEALQFYDQM 529 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m 529 (809)
..+.-.+++..+...- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|....+..-...++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2344444555443322 11111111111111111121 12223333333443 23444444444333333334444443
Q ss_pred HHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHH
Q 003584 530 LAR----G----------TKPDY--ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 530 ~~~----g----------~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e 592 (809)
... | -.|.. .++.-+...|...|++++|.++.+...+ ..|+ ++.|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 321 1 12333 2445556667788888888888887763 3565 5777778888888888888
Q ss_pred HHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCC-------CccHHhHhhhhhhcCChhHHHH
Q 003584 593 AKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELE--PMN-------AMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 593 A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
|.+.++.... ..|-.+-+-....+.+.|++++|+..+......+ |.. .....-.+.+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888877663 2344555556666778888888888877665544 211 1123456778888888888887
Q ss_pred HHHHHH
Q 003584 662 VRKLMK 667 (809)
Q Consensus 662 ~~~~m~ 667 (809)
.+..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-05 Score=82.12 Aligned_cols=292 Identities=11% Similarity=-0.015 Sum_probs=165.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh-HHHHHHHH
Q 003584 374 NNALIDMYAKQGNLDCAFMVFNLMQD---KDV---ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV-VVSSILSA 446 (809)
Q Consensus 374 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 446 (809)
+..+...|...|+.+.+...+....+ ++. .........+...|++++|.+++++..+. .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 34444445555555555444443321 111 11222233456678888888888877765 34333 2221 111
Q ss_pred Hhc----ccchhHHHHHHHHHHHhCCCC-ChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCC
Q 003584 447 CAE----LTVLEFGQQVHAVFLKSGGCS-SLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGK 518 (809)
Q Consensus 447 ~~~----~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 518 (809)
+.. .+..+.+.+.... .....| .......+...+...|++++|.+.+++.. +.+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 222 3334444443332 111222 23344455667888899999988888776 2345567777888888999
Q ss_pred hHHHHHHHHHHHHCCC-CCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHH-H--HHHHHHhhcCCHHH
Q 003584 519 GKEALQFYDQMLARGT-KPDYI--TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHY-A--CMIDLLGRSGKLIE 592 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g~-~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~e 592 (809)
+++|..++++...... .|+.. .+..+...+...|+.++|..+++.........+..... + .+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999888876421 12322 34467777888899999999998764321111212111 1 22333344443332
Q ss_pred HHHH---HHhCcCC-CC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccC-C--------CCCccHHhHhhhhhhcCCh
Q 003584 593 AKAL---LDQMVGE-PD---ATVWKALLSACRVHGDLELGERAANNLFELE-P--------MNAMPYVQLSNMYSTAGKW 656 (809)
Q Consensus 593 A~~~---~~~m~~~-p~---~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~ 656 (809)
+... ....... |. .........++...|+.+.|...++.+.... + .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111111 11 1222356677788889999999888775422 1 1344566778888999999
Q ss_pred hHHHHHHHHHHhCC
Q 003584 657 EDAARVRKLMKSRG 670 (809)
Q Consensus 657 ~~A~~~~~~m~~~~ 670 (809)
++|.+.+......+
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-05 Score=82.07 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=145.5
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe----------eechHHHH
Q 003584 442 SILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDV----------ITWTALIM 511 (809)
Q Consensus 442 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~----------~~~~~li~ 511 (809)
.+.++.-+..+++.+.+.+...+... .+..-++....+|...|.+.+....-+...+..- .+...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34455555666777777777777665 5555666677778777777766655554332211 11222444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCH
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKL 590 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~ 590 (809)
+|.+.++++.|+..|++.+..-..||..+ +....+++....+... -+.|... -...=..-+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 66777888888888888766544444322 2223344444333221 3334331 111125667788999
Q ss_pred HHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 591 IEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 591 ~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+|+..+.++.. .| |+..|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.++...+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998875 24 6668999999999999999999999999999999999999888889999999999999988766
Q ss_pred CC
Q 003584 669 RG 670 (809)
Q Consensus 669 ~~ 670 (809)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 53
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.6e-07 Score=89.44 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=116.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHH---HHHHHHHHhhcC
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDH---YACMIDLLGRSG 588 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g 588 (809)
.+...|++++|++++++- .+.......+..+...++++.|.+.++.|. .+..|... ..+.+..+.-..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCch
Confidence 355679999999988652 345666778889999999999999999997 44455432 234444444445
Q ss_pred CHHHHHHHHHhCcCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCCh-hHHHHHHHH
Q 003584 589 KLIEAKALLDQMVGE--PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKW-EDAARVRKL 665 (809)
Q Consensus 589 ~~~eA~~~~~~m~~~--p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 665 (809)
.+.+|.-+|+++..+ +++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999998865 67778999999999999999999999999999999999999999999999999 667788888
Q ss_pred HHhC
Q 003584 666 MKSR 669 (809)
Q Consensus 666 m~~~ 669 (809)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.7e-05 Score=73.40 Aligned_cols=208 Identities=12% Similarity=0.063 Sum_probs=120.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH---HhhcCCChHHHHHHHHHHHHhccCCchHHHH-HHHHHH
Q 003584 306 SMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLN---CFASNIDLNNAKSVHSLIVKTGFEGYKFVNN-ALIDMY 381 (809)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~y 381 (809)
-+...+...|++..|+.-|...++. |+..|..+.+ .|...|.-..|..-+..+++. .||-.... .-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4778888899999999999988653 4444544443 566667666666666666554 34432211 122345
Q ss_pred HhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHH
Q 003584 382 AKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHA 461 (809)
Q Consensus 382 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 461 (809)
.+.|.++.|..-|+.+.+.++.- +....++.+.- +.+++. .....+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~-------~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLA-------LIQEHW---------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHH-------hHHHHH---------HHHHHHHHHhcCCchhhHHHHHH
Confidence 67777777777777766532210 00001111100 111111 11222333444556666666666
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003584 462 VFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538 (809)
Q Consensus 462 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 538 (809)
.+++.. +.|...+..-..+|...|++..|+.-+.... ..+....--+-..+...|+.+.++...++.++ +.||.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 665543 4566666777777888888888776655443 44555555566667778888888888887776 56776
Q ss_pred H
Q 003584 539 I 539 (809)
Q Consensus 539 ~ 539 (809)
.
T Consensus 257 K 257 (504)
T KOG0624|consen 257 K 257 (504)
T ss_pred h
Confidence 4
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.1e-05 Score=71.41 Aligned_cols=408 Identities=14% Similarity=0.081 Sum_probs=197.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC--CCeeeHHH-HHHHHHhc
Q 003584 238 FPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI--DNEVSWNS-MIVGFARQ 314 (809)
Q Consensus 238 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~ 314 (809)
|.+++..+.+..++..+.+++..-.+.. +.+..-.+.|...|-...++..|...++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3444444444444555555444444332 22344445555555555666666655555442 21111211 13344556
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHH--hhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHH
Q 003584 315 GFHKEALSLFKKMHARDIKIDDFTYPSVLNC--FASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFM 392 (809)
Q Consensus 315 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 392 (809)
+.+.+|+.+...|.+. |+...-..-+.+ ....+++..++.+.++.... .+..+.+...-...+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6677777777666432 111111111111 12334455555444443221 122233333344556677777777
Q ss_pred HHhhcCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhH-HHHHHHHHhcccchhHHHHHHHHHHHhC
Q 003584 393 VFNLMQD----KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVV-VSSILSACAELTVLEFGQQVHAVFLKSG 467 (809)
Q Consensus 393 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g 467 (809)
-|+...+ .....||.-+.- .+.|+++.|+++..++.++|++..+.. ......+ .....+.....++...+
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal--- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL--- 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH---
Confidence 7766554 244555554433 345666777777777776665422110 0000000 00000000011111000
Q ss_pred CCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC-----CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHH
Q 003584 468 GCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR-----DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITF 541 (809)
Q Consensus 468 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~ 541 (809)
+..+|.-...+.+.|+++.|.+.+..|+.+ |++|...+.-. -..|++.+..+-++-+... .| -..||
T Consensus 241 ----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ETF 313 (459)
T KOG4340|consen 241 ----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPPETF 313 (459)
T ss_pred ----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCChHHH
Confidence 112233334567889999999999999843 67776555322 2245555555555555553 44 34699
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCcCCCCHHHHHHHHHH-HHhc
Q 003584 542 VGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR-SGKLIEAKALLDQMVGEPDATVWKALLSA-CRVH 619 (809)
Q Consensus 542 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m~~~p~~~~~~~ll~a-~~~~ 619 (809)
..++-.|++..-++.|-.++.+=....-.-.+...|+ |++++.- .-..++|.+-++.....--...-..-+.. -.++
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~ 392 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARH 392 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888743211000001223333 3344433 34667776665544311000000011111 1122
Q ss_pred CC----hhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 620 GD----LELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 620 g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+ ...+++-+++.+++.- .+...-+++|....++..+.+.|..-.+
T Consensus 393 ~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 393 NRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22 2233344455555431 2455667889999999999999987654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0001 Score=76.92 Aligned_cols=239 Identities=14% Similarity=0.053 Sum_probs=145.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccch
Q 003584 376 ALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVL 453 (809)
Q Consensus 376 ~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 453 (809)
.|.++.-+..+++.|.+-++...+ .+..-++....+|...|.+.+......+..+.|-. ...-|+.+-.+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~------- 300 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA------- 300 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH-------
Confidence 344445555566666666555443 23333445555666666666666655554443311 00111111111
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003584 454 EFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARG 533 (809)
Q Consensus 454 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 533 (809)
...+...|.+.++++.|...|++...+... -....+....++++...+...-
T Consensus 301 ---------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~-- 352 (539)
T KOG0548|consen 301 ---------------------LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY-- 352 (539)
T ss_pred ---------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--
Confidence 111345677778888888888875522111 1112233444555555554443
Q ss_pred CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCH-HHHH
Q 003584 534 TKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDA-TVWK 610 (809)
Q Consensus 534 ~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~ 610 (809)
+.|+.. -...-.+.+.+.|++..|...|.++++. -+-|...|+.-.-+|.+.|.+.+|++=-+.... .|+. ..|.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 345442 2223356678889999999999988764 244567888888899999999988887666653 3433 3555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhh
Q 003584 611 ALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYST 652 (809)
Q Consensus 611 ~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (809)
-=+.++....+++.|.+.|++.++.+|++......+..++..
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 556677777899999999999999999988777776666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=76.89 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=87.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 524 QFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 524 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
.+|++.++ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555555 34554 44556677778888888888877663 344 556777788888888888888888887764
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 603 --EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 603 --~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
+.++..|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3456688888888888888888888888888888888887777665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-07 Score=60.51 Aligned_cols=33 Identities=39% Similarity=0.630 Sum_probs=26.9
Q ss_pred cCCCCcchHHHHHHHHHccCChhHHHHHhhhCC
Q 003584 62 MSDRDGFTWNTMIAAYANSGRLREAKKLFNETP 94 (809)
Q Consensus 62 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 94 (809)
+..||.++||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567888888888888888888888888888874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0017 Score=79.03 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCee-e------chHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHH
Q 003584 480 LVYAKCGCINDANRVFDSMHTRDVI-T------WTALIMGCAQNGKGKEALQFYDQMLAR----GTKPDY-ITFVGLLFA 547 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~~~~~-~------~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a 547 (809)
..+...|+.+.|.+.+.....+... . +..+..++...|++++|..++++.... |..++. .+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3344567777777777665533211 1 234455566777777777777776542 222222 244455556
Q ss_pred HHccCCHHHHHHHHHHhHH
Q 003584 548 CSHAGLAENARWYFESMDK 566 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~ 566 (809)
+...|+.++|...+.+..+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666777777766666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00037 Score=74.48 Aligned_cols=192 Identities=11% Similarity=0.042 Sum_probs=93.0
Q ss_pred cHHHHHHHHhhCCChHHHHHHHHHHHHCCC-CCCcchHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH---HH
Q 003584 202 AWTTMITGYSQNGYGFKAIECFRDMRVEGV-ESNQFTFP-SILTACAAVSARDFGAQVHGCILSSGFEANVYVQS---AL 276 (809)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~L 276 (809)
.|..+...+...|+.+++...+....+... .++..... .....+...|++++|..++...++.. +.|...+. .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 444455555555666665555544433211 11111111 11112335566666666666666553 22333332 11
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCee---eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChH
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEV---SWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLN 353 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 353 (809)
.......+..+.+.+.++.....+.. ....+...+...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---------------------- 144 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---------------------- 144 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------
Confidence 11222234444555555432222222 12233345556666666666666665542
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CH--hHHHHHHHHHHhcCCHHHHHHHHH
Q 003584 354 NAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK-----DV--ISWTSLITGCAYHGSYEEALKYFS 426 (809)
Q Consensus 354 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~ 426 (809)
+.+...+..+...|...|++++|...+++..+. +. ..|..+...+...|++++|+.+++
T Consensus 145 --------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 145 --------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred --------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222334455555666666666666666654431 11 234456667777777777777777
Q ss_pred HHhh
Q 003584 427 DMRI 430 (809)
Q Consensus 427 ~m~~ 430 (809)
+...
T Consensus 211 ~~~~ 214 (355)
T cd05804 211 THIA 214 (355)
T ss_pred HHhc
Confidence 7643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.7e-06 Score=81.22 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=109.1
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CC-e---eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHT--RD-V---ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI----T 540 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 540 (809)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+...|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344455566666677777777777766542 22 1 24555666667777777777777777663 33322 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHH
Q 003584 541 FVGLLFACSHA--------GLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKA 611 (809)
Q Consensus 541 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 611 (809)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33444444433 5566666666666543 23221 11111110 0000000 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---CccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPMN---AMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+...+...|+.+.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999987765 468899999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-07 Score=58.83 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=26.0
Q ss_pred CCCCchhHHHHHHHHHHhCCChHHHHHHHhccC
Q 003584 265 GFEANVYVQSALIDMYAKCGDLDSARRLLEYSE 297 (809)
Q Consensus 265 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 297 (809)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667888888888888888888888888887774
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=77.22 Aligned_cols=118 Identities=9% Similarity=0.059 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHH-HhcCC--hhHH
Q 003584 551 AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSAC-RVHGD--LELG 625 (809)
Q Consensus 551 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~-~~~g~--~~~A 625 (809)
.++.+++...++...+ .-+.+...|..|...|...|++++|...+++... .| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455556555555543 2234566777777778888888888888777664 34 555777777764 56666 4888
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888899999988888887653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00013 Score=70.06 Aligned_cols=305 Identities=12% Similarity=0.044 Sum_probs=157.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHH-HHHHHHhcC
Q 003584 340 PSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTS-LITGCAYHG 416 (809)
Q Consensus 340 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g 416 (809)
.+++..+.+..++..+.+++..-.+.. +.+....+.|...|-...++..|-..++++.. |...-|.. -...+-+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444433332 11333445556666667777777777776654 22222221 134455667
Q ss_pred CHHHHHHHHHHHhhcCCccCHhHHHHHHHHH--hcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 417 SYEEALKYFSDMRISGICPDHVVVSSILSAC--AELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 417 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
.+..|+.+...|... |+...-..-+.+. -+.+++..++.+..+.-. ..+..+.+...-...+.|+.++|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHH
Confidence 777788777777642 2222111112211 123344444433333221 11222222222334455666666666
Q ss_pred HHhcCC----CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 495 FDSMHT----RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYIT----FVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 495 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
|+...+ .....||.-+ +..+.|+++.|+++..++++.|++.-+.- -.-.+.+ ..+..-..+..+.
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh~Sa-- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQSA-- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHHHHH--
Confidence 655542 1223444332 23344566666666666666554321110 0000000 0000000000000
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 567 VYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG----EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 567 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
-+..++.-...+.+.|+.+.|.+.+..||. +.|+++...+.- --..++...+.+-+.-+++++|-.+.+
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHH
Confidence 012233334456788999999999999985 368887766542 233456666777778889999988899
Q ss_pred HHhHhhhhhhcCChhHHHHHHHH
Q 003584 643 YVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
+..+.-+|++..-++-|..++-+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 99999999999999999887754
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-06 Score=87.39 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=144.2
Q ss_pred ccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHH
Q 003584 366 GFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILS 445 (809)
Q Consensus 366 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 445 (809)
+++|--..-..+...+.+.|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.++ +||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555556677888889999999999999876 46888888899999888888888777763 455555544443
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHH
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQF 525 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 525 (809)
......-+++|.++++....+--..|+.. ...+++++++.+.
T Consensus 466 -----------------------------------v~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 -----------------------------------VLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred -----------------------------------hccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 33333445666666665543211112111 1236788888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-
Q 003584 526 YDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG- 602 (809)
Q Consensus 526 ~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~- 602 (809)
|+.-.+. .| -..||-.+..+..+.++++.|.+.|..-. .+.|+ ...|+.+-.+|.+.|+..+|...+++...
T Consensus 508 le~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 508 LERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 8776653 33 33467777777777777777777776654 34454 36677777777777777777777766653
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 603 -EPDATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 603 -~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
..+..+|.+..-....-|.+++|++++.+++.+.
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 1334466666666777777777777777766543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-05 Score=89.98 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=169.7
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC--------CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR--------DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-I 539 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ 539 (809)
+.....|-..+......++++.|++++++.... -...|.++++.....|.-+...++|+++.+. -|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 445666777777788899999999999987631 2357999999888899889999999999883 344 4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-C---CHHHHHHHHHH
Q 003584 540 TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-P---DATVWKALLSA 615 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p---~~~~~~~ll~a 615 (809)
.|..|...|.+.+..++|.++++.|.++++ .....|..+++.+.+...-++|..++.++... | ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688999999999999999999999999877 66788999999999999999999999887641 3 34466666777
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
-.++|+.+.+..+|+.++.-.|.....|..++++=.+.|..+.++.+|++....++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999998865
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.9e-06 Score=74.65 Aligned_cols=99 Identities=11% Similarity=-0.050 Sum_probs=88.5
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHh
Q 003584 570 IKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
+.|+ .+..+...+...|++++|.+.|+.... +.+...|..+..++...|++++|+..++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4454 355678889999999999999998775 346779999999999999999999999999999999999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhCC
Q 003584 648 NMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++...|+.++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=75.67 Aligned_cols=171 Identities=10% Similarity=0.120 Sum_probs=115.3
Q ss_pred HHHHHhcC-CHHHHHHHHHhcC---CCCeeechHHHHHHHhcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 003584 479 VLVYAKCG-CINDANRVFDSMH---TRDVITWTALIMGCAQNGKG--KEALQFYDQMLARGTKP-DYITFVGLLFACSHA 551 (809)
Q Consensus 479 i~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~ 551 (809)
..++.+.| .+++++..++++. .++..+|+.....+.+.|+. ++++.+++++++. .| |..+|.....++.+.
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence 33344445 4677777777665 33445677655555556653 6678888888774 44 445777777778888
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcC--
Q 003584 552 GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS---GK----LIEAKALLDQMVG-EP-DATVWKALLSACRVHG-- 620 (809)
Q Consensus 552 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g-- 620 (809)
|+++++++.++.+.+. . ..+...|+....++.+. |. .+++.++..++.. .| |..+|+-+...+...+
T Consensus 156 ~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~ 233 (320)
T PLN02789 156 GGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEA 233 (320)
T ss_pred hhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcc
Confidence 8888888888888754 2 22334454444444333 22 3467777755553 34 6679999999998843
Q ss_pred --ChhHHHHHHHHHhccCCCCCccHHhHhhhhhhc
Q 003584 621 --DLELGERAANNLFELEPMNAMPYVQLSNMYSTA 653 (809)
Q Consensus 621 --~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (809)
+..+|...+.+++..+|+++.++..|+++|+..
T Consensus 234 l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 234 LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 456788889999999999999999999999864
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.9e-06 Score=72.33 Aligned_cols=119 Identities=8% Similarity=0.020 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
.+..-.+...+...|++++|..+|+-... .| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455667778899999999999987664 34 56689999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003584 652 TAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKE 715 (809)
Q Consensus 652 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 715 (809)
..|+.+.|.+.|+...... + .+|....+..+.+...+.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999877541 1 246667776666666555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0087 Score=62.86 Aligned_cols=131 Identities=11% Similarity=0.026 Sum_probs=85.2
Q ss_pred CCchHHHHHHHHhhhcCCChhHHHHHhhhCCCC-C-CcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHH
Q 003584 165 DLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDG-K-NHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSIL 242 (809)
Q Consensus 165 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 242 (809)
+-|...|+.||.-+... .+++++..++++... | ....|..-|.+-....+++....+|.+.+..-. +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 56889999999877665 899999999987652 2 456899999999999999999999999876533 344555545
Q ss_pred HHHhc-cCChHHHH----HHHHHH-HHhCCCC-chhHHHHHHHH---------HHhCCChHHHHHHHhccCC
Q 003584 243 TACAA-VSARDFGA----QVHGCI-LSSGFEA-NVYVQSALIDM---------YAKCGDLDSARRLLEYSEI 298 (809)
Q Consensus 243 ~~~~~-~~~~~~a~----~~~~~~-~~~g~~~-~~~~~~~Li~~---------y~~~g~~~~A~~~f~~~~~ 298 (809)
.--.+ .+.....+ +.|+.. .+.|+.+ +...|+..+.. |....+++..+++++++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 43332 23333322 233333 3455443 23345555543 3344567777888877653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00012 Score=77.15 Aligned_cols=214 Identities=17% Similarity=0.153 Sum_probs=153.2
Q ss_pred hcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHH
Q 003584 347 ASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALK 423 (809)
Q Consensus 347 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 423 (809)
.+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45667777777777777665 55667777777777777777777777777655 366777778888888888888998
Q ss_pred HHHHHhhcCCc--------cCHhHHHHHHHHHhcccchhHHHHHHHH-HHHhCCCCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 424 YFSDMRISGIC--------PDHVVVSSILSACAELTVLEFGQQVHAV-FLKSGGCSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 424 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
.++.-.....+ ++..+-.. ........+....++|-. ....+...|..+...|.-.|--.|+++.|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887543210 00000000 111222223334444443 34455568888899999999999999999999
Q ss_pred HHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 003584 495 FDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMD 565 (809)
Q Consensus 495 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 565 (809)
|+... +| |...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|.+.|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99876 33 678999999999999999999999999998 689876 55567778999999999988875543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.7e-05 Score=71.75 Aligned_cols=154 Identities=11% Similarity=0.091 Sum_probs=118.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003584 479 VLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENAR 558 (809)
Q Consensus 479 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 558 (809)
+-.|.+.|+++......+.+..+. . .|...++.++++..+++.++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888877665554433221 1 1223567788888888888752 445668889999999999999999
Q ss_pred HHHHHhHHhhCCCC-ChHHHHHHHHH-HhhcCC--HHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003584 559 WYFESMDKVYGIKP-GPDHYACMIDL-LGRSGK--LIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 559 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~ 632 (809)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++... .| +..++..|...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 445 56778888886 477787 5999999999885 34 5669999999999999999999999999
Q ss_pred hccCCCCCccHH
Q 003584 633 FELEPMNAMPYV 644 (809)
Q Consensus 633 ~~~~p~~~~~~~ 644 (809)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.8e-05 Score=73.04 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHH
Q 003584 535 KPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKAL 612 (809)
Q Consensus 535 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~l 612 (809)
.|+......+-.++...|+-+.+..+...... ....+......++....+.|++.+|...+++... ++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55443335566677777887777777665432 2233444555688889999999999999998875 4788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 613 LSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 613 l~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..+|-+.|+.++|...|.+++++.|+++.++..|+..|.-.|+.++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998877553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-05 Score=84.37 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=114.0
Q ss_pred CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHH
Q 003584 501 RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYA 578 (809)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 578 (809)
.++..+-.|.....+.|++++|..+++...+ +.||.. ....+..++.+.+.+++|...+++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3466777788888899999999999999988 578875 677888899999999999999888764 4554 46777
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHh
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQ 645 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (809)
.+..++.+.|+.++|.++|++... .|+ ..+|.++..++...|+.++|..+|+++++...+-...|..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 888899999999999999998884 344 5689999999999999999999999998876554455443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-05 Score=83.90 Aligned_cols=189 Identities=20% Similarity=0.156 Sum_probs=127.1
Q ss_pred CCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003584 467 GGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLF 546 (809)
Q Consensus 467 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 546 (809)
+++|--..-..+.+.+.++|-...|..+|++.. .|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 445555566677888888888888888888764 577778888888888888888777776 3788888888888
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhH
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~ 624 (809)
.....-.+++|.++++..... .-..+.....+.++++++.+.++.-.. .| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777787777654322 111122222345666666666654332 22 33466666666666666666
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
|.+.|.....++|++...+++++-+|.+.|+..+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 6666766666777666667777666766666666666666666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-05 Score=75.52 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=127.7
Q ss_pred CHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCC--ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CC-ee---ech
Q 003584 436 DHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCS--SLSVDNSLVLVYAKCGCINDANRVFDSMHT--RD-VI---TWT 507 (809)
Q Consensus 436 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~---~~~ 507 (809)
....+......+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+ .. +|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45566677778889999999999999988765321 124667788999999999999999999863 32 22 355
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH
Q 003584 508 ALIMGCAQN--------GKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA 578 (809)
Q Consensus 508 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 578 (809)
.+..++.+. |+.++|.+.|+++... .|+.. ....+..... . ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HHHH
Confidence 555566554 7889999999999884 56543 2222111100 0 00000 1123
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVGE-P----DATVWKALLSACRVHGDLELGERAANNLFELEP 637 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~~-p----~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p 637 (809)
.+.+.|.+.|++++|...+++.... | ....|..++.++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677889999999999999887642 3 245899999999999999999998888766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=83.43 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=116.9
Q ss_pred CCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCC-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 003584 467 GGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRD-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFV 542 (809)
Q Consensus 467 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~ 542 (809)
..+.+...+-.|.......|.+++|..+++... .|| ...+..+...+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 445668888889999999999999999999887 454 457778889999999999999999999984 67765 556
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHH
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALL 613 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll 613 (809)
.+..++.+.|+.++|..+|+++.. ...-+...+..+..++...|+.++|...|++... .|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 677788999999999999999985 2223467888899999999999999999999875 35555555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=69.60 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=93.3
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR 586 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 586 (809)
..+-..+...|+.+.+..+..+.... ..-|.......+......|++.+|...+++... .-++|...|+.+.-.|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555566666666555554331 122223334455666666666666666666553 444556666666666666
Q ss_pred cCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHH
Q 003584 587 SGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 587 ~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (809)
.|++++|..-|.+... ..++.+.+.|...+...|+.+.|+.++..+....+.++..-..|.-+....|+.++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777666666665553 2344566677777777777777777777666666666666666776777777777766554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-06 Score=54.68 Aligned_cols=35 Identities=31% Similarity=0.565 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCc
Q 003584 201 VAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ 235 (809)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 235 (809)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0004 Score=80.06 Aligned_cols=202 Identities=13% Similarity=0.083 Sum_probs=151.6
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHHHHHh-cc---CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-HhHHHHHHH
Q 003584 337 FTYPSVLNCFASNIDLNNAKSVHSLIVKT-GF---EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK-D-VISWTSLIT 410 (809)
Q Consensus 337 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~li~ 410 (809)
..|..-|.-....++.+.|+++.+++++. ++ +--..+|.+++++-..-|.-+...++|++..+- | ...|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44556666666777777777777776653 11 112346777777777777778888888887762 3 356778888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCC-CChhHHhHHHHHHHhcCCHH
Q 003584 411 GCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGC-SSLSVDNSLVLVYAKCGCIN 489 (809)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~ 489 (809)
.|.+.+.+++|.++++.|.+. +.-....|...+..+.+...-+.|..++..+++.-.. ..+.+..-.+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 888888888888888888874 2345667777777888888888888888877765322 24556667788888999999
Q ss_pred HHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003584 490 DANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI 539 (809)
Q Consensus 490 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 539 (809)
.++.+|+... .+-...|+..|..-.++|+.+.+..+|++....++.|-..
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 9999999877 3466789999999999999999999999999988877543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00056 Score=70.94 Aligned_cols=143 Identities=20% Similarity=0.158 Sum_probs=111.6
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHH
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV-GLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDL 583 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 583 (809)
+-.....+...|++++|+..++.++.. .||...|. .....+...++..+|.+.++.+. ...|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHH
Confidence 333444566788999999999998875 66666555 45567888999999999998887 45666 4556677889
Q ss_pred HhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHH
Q 003584 584 LGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 584 ~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
|.+.|++.+|..+++.... +.|+..|..|..+|...|+..++....- ..|.-.|+|++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHH
Confidence 9999999999999987764 3467799999999999999888776543 45777899999999
Q ss_pred HHHHHHhCC
Q 003584 662 VRKLMKSRG 670 (809)
Q Consensus 662 ~~~~m~~~~ 670 (809)
.....+++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 998887763
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.3e-06 Score=53.77 Aligned_cols=35 Identities=40% Similarity=0.783 Sum_probs=32.1
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 538 (809)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=4e-05 Score=68.77 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCcC-C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhh
Q 003584 575 DHYACMIDLLGRSGKLIEAKALLDQMVG-E-PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYST 652 (809)
Q Consensus 575 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (809)
.....++..+...|++++|.+.++.... . .+...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4455667777888888888888877654 3 3566888888888889999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 003584 653 AGKWEDAARVRKLMKSR 669 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~~~ 669 (809)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00037 Score=71.75 Aligned_cols=183 Identities=11% Similarity=0.112 Sum_probs=133.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-CeeechHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCH
Q 003584 480 LVYAKCGCINDANRVFDSMHT--R-DVITWTALIMGCAQNG-KGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLA 554 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~ 554 (809)
..+.+.++.++|..+.+++.+ | +..+|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 345556788888888887763 2 4456777666777777 579999999999985 4443 4565554455566653
Q ss_pred --HHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhc---CCh----
Q 003584 555 --ENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVH---GDL---- 622 (809)
Q Consensus 555 --~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~---g~~---- 622 (809)
+++..+++.+.+ ..| +...|+...-++.+.|++++|++.++++.. ..|..+|+.....+... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 677888877764 344 567788888888899999999999999875 35677898888777655 222
Q ss_pred hHHHHHHHHHhccCCCCCccHHhHhhhhhhc----CChhHHHHHHHHHH
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTA----GKWEDAARVRKLMK 667 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~ 667 (809)
+.++....++++++|+|..++..+..+|... ++..+|.+......
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 4677778899999999999999999999873 34456766665543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00043 Score=71.72 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=104.6
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhH
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~ 624 (809)
.+...|..++|...++.+.. ..+-|+.......+.+.+.++.++|.+.++++.. .|+ ...|-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567899999999999875 3334556666778999999999999999999886 476 5688999999999999999
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
|+..++....-+|+++..|..|+.+|...|+..+|...+.++-.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.038 Score=58.28 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC-chHHHHHHHHHHHhcCCHHHHHHHHh
Q 003584 317 HKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG-YKFVNNALIDMYAKQGNLDCAFMVFN 395 (809)
Q Consensus 317 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~ 395 (809)
.+.....++++...-..--..+|...|+...+..-+..|+.+|..+.+.+..+ ++.+.++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555555443222223456666666666667777777777777766655 6667777777655 355666666666
Q ss_pred hcCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCH--hHHHHHHHHHhcccchhHHHHHH
Q 003584 396 LMQD--K-DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDH--VVVSSILSACAELTVLEFGQQVH 460 (809)
Q Consensus 396 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~ 460 (809)
.-.. + ++.--+..+.-+...|+-..|..+|++....++.||. ..|..+|.-=++.|++.....+-
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5432 2 2333344555555666666666666666665444442 34444444444444444444443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00019 Score=75.22 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=102.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-C-CHHHHHHHHHHHHh
Q 003584 541 FVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-P-DATVWKALLSACRV 618 (809)
Q Consensus 541 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p-~~~~~~~ll~a~~~ 618 (809)
..+|+..+...+++++|.++|+++.+. .|+ ....|+..+...++-.+|.+++++...+ | |...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345667777788999999999988754 355 4455788888888889999998887752 4 55577777778899
Q ss_pred cCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 619 HGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
.++.+.|+.+++++.++.|++..+|..|+.+|...|++++|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00052 Score=78.67 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
+.+|--|-.-|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3455556677888889999999999999999999988888888876
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.028 Score=55.73 Aligned_cols=314 Identities=12% Similarity=0.051 Sum_probs=190.7
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHH---HHhccCChHHHHHHHHHHHHhCCCCchhHH-HHHHH
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILT---ACAAVSARDFGAQVHGCILSSGFEANVYVQ-SALID 278 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~ 278 (809)
.--+-..+.-+|++..|+.-|....+. |...|.++.+ .|...|....|..=+..+++. +||-... ---..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 345667778889999999999887653 5555555543 466778888888777777766 4553321 12234
Q ss_pred HHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHH
Q 003584 279 MYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSV 358 (809)
Q Consensus 279 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 358 (809)
.+.+.|.++.|..=|+.....++. -+....++.+.-..++-.. ....+..+...|+...+.+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHH
Confidence 566778888888777765543221 0111112111111111111 22334445566777777777
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcc
Q 003584 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQ---DKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICP 435 (809)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 435 (809)
...+++.. +.|...+..-..+|...|.+..|+.-+.... ..++....-+-..+...|+.+.++...++-.+. .|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence 77777654 5677777778888888888888877665543 356666666777778888888888888877754 56
Q ss_pred CHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CC--ee---echH
Q 003584 436 DHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--RD--VI---TWTA 508 (809)
Q Consensus 436 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~--~~---~~~~ 508 (809)
|....-.. |-+ +.+....+..+. .....+++.++.+-.+...+ |. .+ .+..
T Consensus 255 dHK~Cf~~---YKk---lkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 255 DHKLCFPF---YKK---LKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred chhhHHHH---HHH---HHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 64322111 111 111111111111 12234556666665555542 22 22 3344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
+-.+|...|++.+|++...+.++ +.|| ..++.--..||.-...++.|+.-|+...+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55667778888899988888887 5666 45777778888888888888888877653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=51.58 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=30.3
Q ss_pred cccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCC
Q 003584 200 HVAWTTMITGYSQNGYGFKAIECFRDMRVEGVES 233 (809)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 233 (809)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999998887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=51.19 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCC
Q 003584 98 FFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRP 131 (809)
Q Consensus 98 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 131 (809)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0053 Score=58.72 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHH
Q 003584 588 GKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDA 659 (809)
Q Consensus 588 g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 659 (809)
+++.+|.-+|++|.. .|+..+.+-...++...|++++|+.+++.++..+|+++.+...++-.--..|+-.++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 345555555555554 245555555555555556666666666666666666655555555555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00035 Score=62.59 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=89.3
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-
Q 003584 525 FYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG- 602 (809)
Q Consensus 525 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~- 602 (809)
+|++... ..|+. .....+...+...|++++|...++.+... -+.+...+..+...+.+.|++++|...+++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 35554 34566777788899999999999887653 233667788889999999999999999988753
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 603 -EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 603 -~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
+.+...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 345668888999999999999999999999999998765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0031 Score=59.82 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=113.6
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeeechHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003584 481 VYAKCGCINDANRVFDSMHTRDVITWTAL---IMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENA 557 (809)
Q Consensus 481 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 557 (809)
+..-+|+.+.|...++.+..+-+.++... ..-+-..|++++|+++++.+++.. +.|.+++..=+...-..|..-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 33446667777777666552222222211 112456788999999999998875 55667777777777777877788
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 003584 558 RWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHG---DLELGERAANNL 632 (809)
Q Consensus 558 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g---~~~~A~~~~~~~ 632 (809)
++-+....+ .+..|.+.|.-+.++|...|+++.|.-.++++.. .| ++..+..+...+...| |.+.|.+.|.++
T Consensus 140 Ik~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888877776 4667888899999999999999999999988764 45 4446666666655554 678888999999
Q ss_pred hccCCCCCccHH
Q 003584 633 FELEPMNAMPYV 644 (809)
Q Consensus 633 ~~~~p~~~~~~~ 644 (809)
+++.|.+...+.
T Consensus 218 lkl~~~~~ral~ 229 (289)
T KOG3060|consen 218 LKLNPKNLRALF 229 (289)
T ss_pred HHhChHhHHHHH
Confidence 999986554443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.12 Score=58.09 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcCCHH---HHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 577 YACMIDLLGRSGKLI---EAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 577 ~~~li~~~~~~g~~~---eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
-+.|++++-+.++.. +|+-+++.-.. .| |..+=-.|+..|.-.|-+..|.+.|+-+--.+-...+.=..+...+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 345666777666654 33333333332 22 33344456666766677777766666542111111111122334455
Q ss_pred hcCChhHHHHHHHHHH
Q 003584 652 TAGKWEDAARVRKLMK 667 (809)
Q Consensus 652 ~~g~~~~A~~~~~~m~ 667 (809)
..|+|..+...+..-.
T Consensus 519 t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHL 534 (932)
T ss_pred hcccchhHHHHHHHHH
Confidence 6667777766665543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00062 Score=61.75 Aligned_cols=114 Identities=20% Similarity=0.224 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCH----HHHHHHHHHHHhcCChhH
Q 003584 551 AGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PDA----TVWKALLSACRVHGDLEL 624 (809)
Q Consensus 551 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~----~~~~~ll~a~~~~g~~~~ 624 (809)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+..... ||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555422221 1122233445566666666666666665542 332 134445566666666666
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22233444566667777777777777766654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0016 Score=61.70 Aligned_cols=182 Identities=17% Similarity=0.216 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHhcCC--------CCe-eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCH
Q 003584 485 CGCINDANRVFDSMHT--------RDV-ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL-LFACSHAGLA 554 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~ 554 (809)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888887751 122 23444555666788999999999998876 3 555432222 2224567899
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003584 555 ENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 555 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~ 632 (809)
++|.++++++.++ -+-|..+|---+.++-..|+--+|++-+..... ..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998864 233556676667777777877788877766654 368889999999999999999999999999
Q ss_pred hccCCCCCccHHhHhhhhhhcCC---hhHHHHHHHHHHhCC
Q 003584 633 FELEPMNAMPYVQLSNMYSTAGK---WEDAARVRKLMKSRG 670 (809)
Q Consensus 633 ~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~ 670 (809)
+-+.|-++-.+..++.++.-.|. .+-|.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998877664 446777777766543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.2e-05 Score=48.13 Aligned_cols=31 Identities=35% Similarity=0.695 Sum_probs=27.4
Q ss_pred ccHHHHHHHHhhCCChHHHHHHHHHHHHCCC
Q 003584 201 VAWTTMITGYSQNGYGFKAIECFRDMRVEGV 231 (809)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 231 (809)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00023 Score=58.78 Aligned_cols=93 Identities=24% Similarity=0.289 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
+..+...+.+.|++++|...++++.. .| +...|..+...+...|+.+.|...+++.+...|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44566677778888888888887654 23 34577778888888899999999999988888888888888888999999
Q ss_pred ChhHHHHHHHHHHhC
Q 003584 655 KWEDAARVRKLMKSR 669 (809)
Q Consensus 655 ~~~~A~~~~~~m~~~ 669 (809)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999998888776543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00094 Score=70.13 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=90.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCH
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLA 554 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~ 554 (809)
.+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++.+.. .| |...+..-...|.+.++.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 445566666788888888888888766666666777777788888888888888864 34 444455555567788888
Q ss_pred HHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 555 ENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 555 ~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
+.|.++.+.+. ...|+. .+|..|+..|.+.|++++|+..++.+|.
T Consensus 251 ~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 251 ELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888776 445544 5788888888888888888888888874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.9e-05 Score=57.96 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC-ChhHHHHHHHHHHhC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG-KWEDAARVRKLMKSR 669 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 669 (809)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999999999999 799999999887653
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=58.55 Aligned_cols=121 Identities=20% Similarity=0.124 Sum_probs=81.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh--HHHHHHHH
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPDY----ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP--DHYACMID 582 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~ 582 (809)
++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+..... .-.|.. .....|..
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 33443 467777787778888775 2333 23334456677788888888888887764 322222 23345677
Q ss_pred HHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003584 583 LLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACRVHGDLELGERAANNLF 633 (809)
Q Consensus 583 ~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~ 633 (809)
++...|++++|+..++..... ..+..+..++..+...|+.++|...|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788888888888888776543 344567777788888888888888887653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00042 Score=73.10 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=49.7
Q ss_pred HhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHH
Q 003584 584 LGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 584 ~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
+...|++++|++.|+++.. .| +...|..+..+|...|++++|+..++++++++|+++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555556555555543 22 344555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhC
Q 003584 662 VRKLMKSR 669 (809)
Q Consensus 662 ~~~~m~~~ 669 (809)
.+++..+.
T Consensus 92 ~~~~al~l 99 (356)
T PLN03088 92 ALEKGASL 99 (356)
T ss_pred HHHHHHHh
Confidence 66555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0084 Score=69.10 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=100.4
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 003584 336 DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYH 415 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 415 (809)
...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|-+...|+.. ++++|..++.+. +..|...
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~ 182 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKK 182 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhh
Confidence 3456667777778888888888888888777 67788888888888888 899998877654 3347777
Q ss_pred CCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHh-CCCCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 416 GSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKS-GGCSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 416 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
.++.++.+++.++... .|+.+.+- .++.+.+... |..--+.++-.|...|-+..+++++..+
T Consensus 183 kq~~~~~e~W~k~~~~--~~~d~d~f---------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 183 KQYVGIEEIWSKLVHY--NSDDFDFF---------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred hcchHHHHHHHHHHhc--CcccchHH---------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 7888888988888875 34433321 1122222221 3333344555566777888888888888
Q ss_pred HHhcCC---CCeeechHHHHHHH
Q 003584 495 FDSMHT---RDVITWTALIMGCA 514 (809)
Q Consensus 495 ~~~~~~---~~~~~~~~li~~~~ 514 (809)
|..+.+ .|.....-++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 888763 34445555666665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.8e-05 Score=47.50 Aligned_cols=31 Identities=42% Similarity=0.592 Sum_probs=24.1
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHHHHcCC
Q 003584 99 FTWSSLIYGYSNYGLDIEAFELFWQMQLEGY 129 (809)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 129 (809)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0006 Score=66.37 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=72.5
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhH
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLEL 624 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~ 624 (809)
..+.+++++|+..|...+ .+.|+. .-|..=..+|.+.|..+.|.+-.+.... .|.-. +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677888888887776 456644 4444556778888888888877766653 45443 88999999999999999
Q ss_pred HHHHHHHHhccCCCCCccHHhHhh
Q 003584 625 GERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
|++.|+++++++|++...-..|..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999999988755554433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00064 Score=59.21 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CccHHhHhhh
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMN---AMPYVQLSNM 649 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 649 (809)
..++..+.+.|++++|.+.++++.. .|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445555555555555555442 122 2244445555555566666666666665555543 2345555556
Q ss_pred hhhcCChhHHHHHHHHHHhC
Q 003584 650 YSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 650 ~~~~g~~~~A~~~~~~m~~~ 669 (809)
|.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0003 Score=68.38 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=80.6
Q ss_pred HHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhH
Q 003584 581 IDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWED 658 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (809)
.+-+.+.+++++|+..|.+.+. +.|++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456788999999999998875 45788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003584 659 AARVRKLMKSR 669 (809)
Q Consensus 659 A~~~~~~m~~~ 669 (809)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999887654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.5e-05 Score=61.17 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHhCcC-CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHH
Q 003584 587 SGKLIEAKALLDQMVG-EP---DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARV 662 (809)
Q Consensus 587 ~g~~~eA~~~~~~m~~-~p---~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 662 (809)
.|++++|+.+++++.. .| +...|-.+..++...|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566777777766654 23 344566677788888888888888877 666676666777778888888888888887
Q ss_pred HHH
Q 003584 663 RKL 665 (809)
Q Consensus 663 ~~~ 665 (809)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=57.30 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=68.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHH
Q 003584 541 FVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLS 614 (809)
Q Consensus 541 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~ 614 (809)
+..+...+...|++++|.+.|+.+.+.+.-.| ....+..+..++.+.|++++|.+.++.+.. .|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555666666666666666654321111 123455567777777777777777776653 233 346777788
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCccHH
Q 003584 615 ACRVHGDLELGERAANNLFELEPMNAMPYV 644 (809)
Q Consensus 615 a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (809)
++...|+.+.|...++++++..|+++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888888899999999988888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=71.39 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.+|..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|...+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444445555555555555555555 3445555555555555555555555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.13 Score=52.93 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003584 477 SLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAEN 556 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 556 (809)
..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..|++++-.++... +-.++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3355556778888899888888888888899999999999999877665432 2234788888899999999999
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHH
Q 003584 557 ARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSAC 616 (809)
Q Consensus 557 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~ 616 (809)
|..+...+. +..-+.+|.++|.+.+|.+.--+. .|...+..+..-|
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHC
Confidence 888876532 244577888899998888775543 3555444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00023 Score=54.14 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777777777777777777776544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0045 Score=55.41 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=78.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChh
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWE 657 (809)
Q Consensus 580 li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 657 (809)
..--+-..|++++|..+|+-... .-+..-|..|...|...++++.|+..|..+..++++|+.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445678999999999986653 3466689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003584 658 DAARVRKLMKS 668 (809)
Q Consensus 658 ~A~~~~~~m~~ 668 (809)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998775
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.3 Score=53.89 Aligned_cols=339 Identities=15% Similarity=0.092 Sum_probs=176.3
Q ss_pred HCCCCCCcchHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---hHHHHHHHhccCC-
Q 003584 228 VEGVESNQFTFPS-----ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGD---LDSARRLLEYSEI- 298 (809)
Q Consensus 228 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~~~~- 298 (809)
.-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666555543 4666667778888888766653222111 5677777777777633 2333444445554
Q ss_pred -CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHH
Q 003584 299 -DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDI----KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFV 373 (809)
Q Consensus 299 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 373 (809)
...++|..+..--.+.|+.+.|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+...-..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~----- 578 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR----- 578 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-----
Confidence 5678899998888899999999888764222111 112222334444555555555555554444332100
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCCHHHHHHHH--HHHh----hcCCccCHhHHHHHHHH
Q 003584 374 NNALIDMYAKQGNLDCAFMVFNLMQD-KDVISWTSLITGCAYHGSYEEALKYF--SDMR----ISGICPDHVVVSSILSA 446 (809)
Q Consensus 374 ~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~----~~g~~p~~~t~~~ll~a 446 (809)
-+...-..+.-.|..+|..... .|..+ +-+.|-+..+. +++.-| +... ..|..|+. ...-.+
T Consensus 579 ----s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 579 ----SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred ----HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 0001111122233333333222 11111 11112222222 222111 1100 12223332 233334
Q ss_pred HhcccchhHHHHHHH----------HHH-HhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHh
Q 003584 447 CAELTVLEFGQQVHA----------VFL-KSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQ 515 (809)
Q Consensus 447 ~~~~~~~~~a~~~~~----------~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 515 (809)
|++......+.+..+ .+. +.|......+.+--+.-+..-|+..+|.++-.+..-||-..|---+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 444433221111111 111 123222222233334445567888888888888887887777777888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 003584 516 NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKA 595 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 595 (809)
.+++++-+++-+.+. .++-|.....+|.+.|+.+||.+++.+.. +. .-.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHH
Confidence 888877666554432 25667777888888888888888875432 11 145777888888888877
Q ss_pred HHHh
Q 003584 596 LLDQ 599 (809)
Q Consensus 596 ~~~~ 599 (809)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 6533
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0037 Score=58.62 Aligned_cols=128 Identities=18% Similarity=0.274 Sum_probs=73.2
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD--YITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACM 580 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 580 (809)
..+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...++...+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3455566666677777777777777765432222 235556666666777777777776665532 23 23444455
Q ss_pred HHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCC
Q 003584 581 IDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
..+|...|+...+..-++... ..++.|.+.++++++++|++ |..+...+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555655555544443322211 12567788888888888876 4444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.014 Score=55.98 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=108.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC
Q 003584 524 QFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE 603 (809)
Q Consensus 524 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~ 603 (809)
++.+.+.......|.+....-...|.+.|++++|.+..... -+.+....=+..+.|..+++-|.+.+++|..-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555555444444444444555699999999999987542 24555555677788999999999999999965
Q ss_pred CCHHHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 604 PDATVWKALLSACRVH----GDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
.+..+.+.|..++... +.+..|.-+|+++-+.-|+.+......+.++...|+|++|..+++...++..
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 6666777777776432 3588899999999998887888999999999999999999999999987643
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=61.06 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhh
Q 003584 575 DHYACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 575 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
..+..+...+.+.|++++|...|++... .|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4456666677777777777777776653 122 35788888889999999999999999999999888888888888
Q ss_pred hhhcCC
Q 003584 650 YSTAGK 655 (809)
Q Consensus 650 ~~~~g~ 655 (809)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=67.70 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=63.2
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhH
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~ 624 (809)
+...|++++|...|+.+.+ ..| +...|..+..+|.+.|++++|+..++++.. .| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3445556666666555543 222 334555566666666677777666666653 23 45577777777788888888
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhh
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
|+..++++++++|+++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888777766665444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00058 Score=51.94 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=50.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 580 li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+...+.+.|++++|.+.|++... .|+ ...|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45678889999999999998886 364 45899999999999999999999999999999874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=61.19 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhh
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
...|..++..+...|++++|...+++... .|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34556667777788889999888887752 222 3488999999999999999999999999999999888888888
Q ss_pred hhh-------hcCChhHHHHHHHHH
Q 003584 649 MYS-------TAGKWEDAARVRKLM 666 (809)
Q Consensus 649 ~~~-------~~g~~~~A~~~~~~m 666 (809)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0029 Score=64.11 Aligned_cols=153 Identities=13% Similarity=0.038 Sum_probs=110.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHhHHhhCCCCChHH-------------
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL--FACSHAGLAENARWYFESMDKVYGIKPGPDH------------- 576 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------- 576 (809)
.+...|++++|...--..++. .+.. .+..++ .++--.++.+.|...|++.. .+.|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 355678888887766555543 2211 122222 23445667788888877654 44554321
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhh
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG------EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMY 650 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (809)
+.-=.+...+.|++.+|.+.+.+... +|++..|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11123446788999999999988774 255667878888889999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhCC
Q 003584 651 STAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 651 ~~~g~~~~A~~~~~~m~~~~ 670 (809)
...++|++|.+-+++.....
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998876543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0026 Score=52.17 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEP 637 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p 637 (809)
+..+...+...|++++|.+.+++... +.+..+|..+...+...|+.+.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 33344444444555555555544332 12234555666666666666666666666666555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.22 Score=54.23 Aligned_cols=384 Identities=14% Similarity=0.098 Sum_probs=190.5
Q ss_pred hhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHH-CCCCCCcchHHHHH-------HHHhccCChHHHH
Q 003584 184 IFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRV-EGVESNQFTFPSIL-------TACAAVSARDFGA 255 (809)
Q Consensus 184 ~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll-------~~~~~~~~~~~a~ 255 (809)
+++|.+..+.-|. +..|..+.....+.-.++-|...|-+... .|++.-.. +.++. ...+--|.+++|+
T Consensus 679 ledA~qfiEdnPH---prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH---PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc---hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhh
Confidence 4555555544433 44566666555555555555555544322 12210000 00000 0111235666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCC-----eeeHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003584 256 QVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDN-----EVSWNSMIVGFARQGFHKEALSLFKKMHAR 330 (809)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 330 (809)
+++-.+-++. .-|.++.+.|++-...++++.....+ ...|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6665554432 23566667777777777766543221 245777777777777777777777654211
Q ss_pred CCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHH
Q 003584 331 DIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLIT 410 (809)
Q Consensus 331 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 410 (809)
...+.++.+...+++-+.+- ..++.+....-.+.+++.+.|.-++|.+.|-+...|.. .+.
T Consensus 826 ---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~ 886 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVH 886 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHH
Confidence 12333444433333322222 22355666667788888888888888888777665532 345
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHH
Q 003584 411 GCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIND 490 (809)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 490 (809)
.|...++|.+|.++-+..+ -|...|. +.- .+.++++ +.. + ---|.++-+.|+.-+
T Consensus 887 tCv~LnQW~~avelaq~~~----l~qv~tl---iak--------~aaqll~---~~~------~-~eaIe~~Rka~~~~d 941 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQ----LPQVQTL---IAK--------QAAQLLA---DAN------H-MEAIEKDRKAGRHLD 941 (1189)
T ss_pred HHHHHHHHHHHHHHHHhcc----chhHHHH---HHH--------HHHHHHh---hcc------h-HHHHHHhhhcccchh
Confidence 6777788888888776654 2333332 111 1111111 100 0 112566778888777
Q ss_pred HHHHHHhcCCCCe---eechHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003584 491 ANRVFDSMHTRDV---ITWTALIMGCA----QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFES 563 (809)
Q Consensus 491 A~~~~~~~~~~~~---~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 563 (809)
|.+++.+|.++.. +.+-.+=..|. -..+..++++-.++....|...|... +...|...++-.+.+.
T Consensus 942 aarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n 1014 (1189)
T KOG2041|consen 942 AARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILEN 1014 (1189)
T ss_pred HHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHh
Confidence 7777777763211 12222211111 11233445555555555554433322 1223333333333332
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 564 MDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG----EPDATVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 564 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
.-. -....|+-.|..--...|.++.|+..--.+.. -|-..+|..|.-+.+....+...-++|.++...
T Consensus 1015 ~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1015 TWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred hhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 211 01234444555556677888888765433332 144456665554444444444455555555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=64.34 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCCccHHhH
Q 003584 572 PGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHG---DLELGERAANNLFELEPMNAMPYVQL 646 (809)
Q Consensus 572 p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (809)
-|.+.|-.|...|.+.|+...|..-|.+... .+++..+..+..++..+. ...++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3668888888889999999998888887763 356667777777765443 47888999999999999999999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 647 SNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
+..+...|++.+|...++.|.+...
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=51.99 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 613 LSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 613 l~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
...|...++++.|.+.++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999998887654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.73 Score=52.11 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=92.2
Q ss_pred echHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGK---EALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMI 581 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 581 (809)
+-+.|+..+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-+..|.+.|..+.-+ .|.-|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 3567788888888755 555566555543 1334456667888999999999999999888665 6666654332 23
Q ss_pred HHHhhcCCHHHHHHHHHhCcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCCccHHhHhhhhhh
Q 003584 582 DLLGRSGKLIEAKALLDQMVG-----EPDATVWKALLSACRVHGDLELGERAANNLFELEP----MNAMPYVQLSNMYST 652 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~-----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~ 652 (809)
..+...|++..+...++.... ..+..- ++....++|.+..-.++..---.+.- .-..+-.........
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777766666655431 112222 23333455665554443321111211 011223355667788
Q ss_pred cCChhHHHHHHHHHH
Q 003584 653 AGKWEDAARVRKLMK 667 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~ 667 (809)
.++.++-...+..|+
T Consensus 592 ~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMK 606 (932)
T ss_pred CCcHHHHHHHHhccc
Confidence 888888888888876
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0099 Score=60.48 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=98.0
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFA-CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDL 583 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 583 (809)
+|-.++....+.+..+.|..+|.+.++.+ ......|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46777777777778888888888887532 2233344444333 334567777999999988764 4466778888999
Q ss_pred HhhcCCHHHHHHHHHhCcCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 584 LGRSGKLIEAKALLDQMVGE-PD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 584 ~~~~g~~~eA~~~~~~m~~~-p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+.+.|+.+.|..+|++.... |. ..+|...+.--..+|+.+....+.+++.+.-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998863 33 34999999999999999999999999999888643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00024 Score=45.44 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=30.5
Q ss_pred HHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 629 ANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 629 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.18 Score=54.25 Aligned_cols=209 Identities=14% Similarity=0.081 Sum_probs=111.6
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh
Q 003584 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV 438 (809)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 438 (809)
++.+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +|....|+++|.+|+--.
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD------ 675 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD------ 675 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH------
Confidence 344555565565533 34456667788888777643 455666666666654210
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCC
Q 003584 439 VVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGK 518 (809)
Q Consensus 439 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 518 (809)
...-+...|..++-+.+...-.+. ..++.--.+-..|+...|+.++|..+. ..+|-
T Consensus 676 ----~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 676 ----YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ----HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 111122233333322222211110 001111123345556667666665543 34455
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003584 519 GKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLD 598 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 598 (809)
.+-++++-+++-. .+..+...+..-+.+...+..|-++|..|-. ...++++....|++.||..+-+
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhh
Confidence 5555555544432 2334555555555666777788888887753 2467888999999999999999
Q ss_pred hCcC-CCCHH-HHHH----------HHHHHHhcCChhHHHHHHHHH
Q 003584 599 QMVG-EPDAT-VWKA----------LLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 599 ~m~~-~p~~~-~~~~----------ll~a~~~~g~~~~A~~~~~~~ 632 (809)
+.|. .||+. -|.. --.|+.+.|+..+|..+++++
T Consensus 798 ~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 798 KHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 8885 34443 1211 123455555666666555555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.018 Score=53.75 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=41.0
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD--YITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666667777888888888877776422221 23566666777777777777777766653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0005 Score=52.89 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=39.1
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 617 RVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777788888877778877777777888888888888887777766544
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.51 Score=48.63 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCC
Q 003584 272 VQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351 (809)
Q Consensus 272 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (809)
+.+..|.-+...|+...|.++..+...||..-|...|.+|+..++|++-.++... +-.+.-|...+.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444466667788999999999888889999999999999999999887765432 2245788888888888888
Q ss_pred hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003584 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVF 394 (809)
Q Consensus 352 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 394 (809)
..+|......+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88877766551 1255677888888888886653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.55 Score=48.90 Aligned_cols=270 Identities=13% Similarity=0.064 Sum_probs=145.6
Q ss_pred HhcCCChHHHHHHHHhcCCC---C------cchHHHHHHHHHccCChhHHHHHhhhCCCCC-cchHHHHHHHH--HcCCC
Q 003584 46 FSNSGEIDEAGQLFEKMSDR---D------GFTWNTMIAAYANSGRLREAKKLFNETPFKN-FFTWSSLIYGY--SNYGL 113 (809)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~ 113 (809)
+-+.+++.+|..+|.+..+. + .+..+.++++|.. .+++.......+..+.. ...|-.|..+. -+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 35678899999998877642 2 3456778888864 45665555555544322 34566666554 36788
Q ss_pred chhHHHHHHHHHHc--CCCCC-----------cccH-HHHHHHhhcCCCchHHHHHHHHHHHhCCC----CchHHHHHHH
Q 003584 114 DIEAFELFWQMQLE--GYRPS-----------QYTL-DNVLRLCSLKGLLQRGEQFHGYAIKTCFD----LNAFVVTGLV 175 (809)
Q Consensus 114 ~~~A~~~~~~m~~~--g~~p~-----------~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li 175 (809)
+.+|++.+..-.+. +..|. .+.+ +.....+...|.+.+|+.+..+++..=+. -+...|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88998888776654 32221 1111 22345667888888888888877755443 6778888877
Q ss_pred HhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc--CChHH
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAV--SARDF 253 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~ 253 (809)
-++++.=-++-- +.+.. .=..-|--||..|.+.=..-+ .-.-..+.|....+..++...... ..+.-
T Consensus 175 lmlsrSYfLEl~----e~~s~-dl~pdyYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSS-DLYPDYYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHhHHHHHHHH----Hhccc-ccChHHHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHhCCHhhccH
Confidence 777764222211 11111 111235566666654321111 111112345555555555544322 23334
Q ss_pred HHHHHHHHHHhCCCCchh-HHHHHHHHHHhCCChHHHHHHHhccC--------CCCeeeHHHHHHHHHhcCChhHHHHHH
Q 003584 254 GAQVHGCILSSGFEANVY-VQSALIDMYAKCGDLDSARRLLEYSE--------IDNEVSWNSMIVGFARQGFHKEALSLF 324 (809)
Q Consensus 254 a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~ 324 (809)
-.+++....+.-+.|+.. +...|+.-+.+ +.+++..+-+.+. +.=+.++..++....+.++..+|-+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555554444555533 34445555544 4444444433221 122345666666666666666666666
Q ss_pred HHHHH
Q 003584 325 KKMHA 329 (809)
Q Consensus 325 ~~m~~ 329 (809)
.-+..
T Consensus 322 ~lL~~ 326 (549)
T PF07079_consen 322 ALLKI 326 (549)
T ss_pred HHHHh
Confidence 55543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.5 Score=48.28 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHccCCHHHHHHHHHHhHHh-hCCCCC--hHHHH
Q 003584 508 ALIMGCAQNGKGKEALQFYDQMLARGTKP-----DYI-TFVGLLFACSHAGLAENARWYFESMDKV-YGIKPG--PDHYA 578 (809)
Q Consensus 508 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~ 578 (809)
.+...+.+.|++++|+++|++....-... +.. .|...+-++...|+...|.+.++..... .++..+ .....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 45566778888888888888877643221 111 2333344556678888888888776532 122222 23444
Q ss_pred HHHHHHhh--cCCHHHHHHHHHhCcCCCCH
Q 003584 579 CMIDLLGR--SGKLIEAKALLDQMVGEPDA 606 (809)
Q Consensus 579 ~li~~~~~--~g~~~eA~~~~~~m~~~p~~ 606 (809)
.|++++-. ...+++|..-|+.+. +.|.
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred HHHHHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence 55555543 345667777776665 4443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0092 Score=65.88 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=105.5
Q ss_pred cCCCCeeechHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcc--------CCHHHHHHHHHH
Q 003584 498 MHTRDVITWTALIMGCAQN--G---KGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHA--------GLAENARWYFES 563 (809)
Q Consensus 498 ~~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~ 563 (809)
....|...|...+.|.... + ...+|..+|++.++ ..||.. .+..+..++... +++..+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3356788999999886543 2 36799999999999 478764 555554444322 123344444443
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 564 MDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 564 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.........+...|..+.-.....|++++|...++++.. .|+...|..+...+...|+.++|...+++++.++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 322112333557788887777788999999999999885 5888899999999999999999999999999999998864
Q ss_pred H
Q 003584 643 Y 643 (809)
Q Consensus 643 ~ 643 (809)
|
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 3
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0013 Score=50.73 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 003584 573 GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHG-DLELGERAANNLFELEP 637 (809)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g-~~~~A~~~~~~~~~~~p 637 (809)
+...|..+...+.+.|++++|+..|++... .| ++..|..+..++...| +.++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677788888888888888888887764 34 4558999999999999 79999999999999887
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.001 Score=51.13 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=27.0
Q ss_pred hcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 586 RSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
..|++++|.++|+++.. .| +..++..+..+|...|++++|...++++...+|+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 34445555555544432 12 3334445555555555555555555555555555433
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.072 Score=54.43 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=49.5
Q ss_pred HHcc-CCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCcCC----C----CHH-HHHHHH
Q 003584 548 CSHA-GLAENARWYFESMDKVYGIKPG----PDHYACMIDLLGRSGKLIEAKALLDQMVGE----P----DAT-VWKALL 613 (809)
Q Consensus 548 ~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m~~~----p----~~~-~~~~ll 613 (809)
|... |++++|.++|+...+.+.-... ...+..++.++.+.|++++|.++|++.... + +.. .+-..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4444 5555555555554433222222 134455667778888888888888765421 1 111 122223
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 614 SACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
-.+...||...|...+++..+.+|.-
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 34556678888888888888887753
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0081 Score=49.58 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=68.3
Q ss_pred cHHHHHHHHhhCCChHHHHHHHHHHHHCCC-CCCcchHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhH
Q 003584 202 AWTTMITGYSQNGYGFKAIECFRDMRVEGV-ESNQFTFPSILTACAAVS--------ARDFGAQVHGCILSSGFEANVYV 272 (809)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 272 (809)
+-...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556677777999999999999999999 999999999999987543 34567789999999999999999
Q ss_pred HHHHHHHHHh
Q 003584 273 QSALIDMYAK 282 (809)
Q Consensus 273 ~~~Li~~y~~ 282 (809)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.088 Score=52.16 Aligned_cols=170 Identities=14% Similarity=0.047 Sum_probs=102.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCe-ee---chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHc
Q 003584 479 VLVYAKCGCINDANRVFDSMHT--RDV-IT---WTALIMGCAQNGKGKEALQFYDQMLARGTKPDY--ITFVGLLFACSH 550 (809)
Q Consensus 479 i~~y~k~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 550 (809)
...+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...|++.++. .|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3345567888888888888763 222 11 123456677888888888888888874 3433 234344443331
Q ss_pred --cC---------------C---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHH
Q 003584 551 --AG---------------L---AENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWK 610 (809)
Q Consensus 551 --~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~ 610 (809)
.+ + ..+|.+.|+.+.+ -|-...-..+|...+..+...--..-+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e~- 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYEL- 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHHH-
Confidence 11 1 1233344444433 333333344554444333211000111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCC---ccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 611 ALLSACRVHGDLELGERAANNLFELEPMNA---MPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 611 ~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
....-|.+.|.+.-|..-++.+++.-|+.+ .+...+..+|...|..++|..+.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 334557888999999999999999887654 456788899999999999998877654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.03 Score=48.12 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=69.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHh
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPDY--ITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLG 585 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 585 (809)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445677889999999999999998877653 4677888899999999999999998876532211 2223333456788
Q ss_pred hcCCHHHHHHHHHhCc
Q 003584 586 RSGKLIEAKALLDQMV 601 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~ 601 (809)
..|+.+||++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999998875544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0038 Score=50.36 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=45.6
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHH
Q 003584 516 NGKGKEALQFYDQMLARGT-KPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEA 593 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA 593 (809)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.. ...|.. .....+...+.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777776422 123334445667777777777777777651 222222 3333445666677777777
Q ss_pred HHHHHh
Q 003584 594 KALLDQ 599 (809)
Q Consensus 594 ~~~~~~ 599 (809)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0038 Score=65.24 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc---HHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP---YVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+...|+.+..+|...|++++|+..++++++++|++..+ |..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34466666666666666666666666666666666533 666666666666666666666666553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.014 Score=61.84 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=82.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHhhhCCCCC-----CcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 003584 170 VVTGLVDMYAKCKCIFEAEYLFKMFPDGK-----NHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTA 244 (809)
Q Consensus 170 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 244 (809)
....+++......+++++..++-+...++ -..+..++|+.|.+.|..++++++++.=...|+-||.+|++.+++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33344444444555666666655444322 1235568889999999999999998888888999999999999999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 003584 245 CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKC 283 (809)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 283 (809)
+.+.|++..|.++...|...+...+..|+..-+..+.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999888888887767777766656555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.54 Score=50.89 Aligned_cols=260 Identities=15% Similarity=0.112 Sum_probs=130.1
Q ss_pred ccHHHHHHHHhhCCChHHHHHHH---------HHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH--HHHHHHhCCCCc
Q 003584 201 VAWTTMITGYSQNGYGFKAIECF---------RDMRVEGVESNQFTFPSILTACAAVSARDFGAQV--HGCILSSGFEAN 269 (809)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~---------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~ 269 (809)
+.+.+-+-.|...|.+++|.++- +.+-.+ ..+.-.|++.=++|.+.++..--+-+ ++.+.++|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 44555556677777777776542 111110 12333455555666666665443332 445667776676
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcC
Q 003584 270 VYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASN 349 (809)
Q Consensus 270 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 349 (809)
... +.+.++-.|++.+|.++|.+ +|.-..|+++|.+|+-- -...-+...
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~ 683 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGS 683 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhc
Confidence 643 44566677889999988863 56666677777666421 112223333
Q ss_pred CChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003584 350 IDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMR 429 (809)
Q Consensus 350 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 429 (809)
|+.++-+.+.+.-.+.-. +..--.+-..++...|+.++|..+. ..+|-.+-++++-+++.
T Consensus 684 g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLD 743 (1081)
T ss_pred CChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcc
Confidence 333333333222111100 0000022344455556666554432 22333333333333332
Q ss_pred hcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHH
Q 003584 430 ISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTAL 509 (809)
Q Consensus 430 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l 509 (809)
. .+..+...+..-+-+...+..|.++|..+-.. .+++++....+++.+|..+-++.++--...|---
T Consensus 744 ~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~py 810 (1081)
T KOG1538|consen 744 K----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPY 810 (1081)
T ss_pred h----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchH
Confidence 1 12233333333344455556666666555332 3567788888899999988888875322223333
Q ss_pred HHHHHhcCChHHHHHHH
Q 003584 510 IMGCAQNGKGKEALQFY 526 (809)
Q Consensus 510 i~~~~~~g~~~~A~~l~ 526 (809)
..-++...+++||.+.|
T Consensus 811 aqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 33344455555554443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.03 Score=46.36 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=65.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhHHhhCCCCChHHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGT-KPDYITFVGLLFACSHAG--------LAENARWYFESMDKVYGIKPGPDHY 577 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~ 577 (809)
...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+|+.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666677999999999999999999 899999999999876543 345677889999876 899999999
Q ss_pred HHHHHHHhh
Q 003584 578 ACMIDLLGR 586 (809)
Q Consensus 578 ~~li~~~~~ 586 (809)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.17 Score=45.90 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC---CHHHH
Q 003584 534 TKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP---DATVW 609 (809)
Q Consensus 534 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p---~~~~~ 609 (809)
+.|....-..|..+....|+..||...|++...- -+.-|....-.+..+....+++.+|...++.... .| .+..-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666667777888888888888888776542 2334556666677777777888888877776553 11 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 610 KALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 610 ~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
-.+...+...|....|+..|+.++.-.|+ +..-...+..+.++|+.++|..-+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45678888899999999999999888874 5555666778889998888766555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.078 Score=57.47 Aligned_cols=31 Identities=16% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 003584 368 EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQ 398 (809)
Q Consensus 368 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 398 (809)
.|.+..|..|...-.+.-.++.|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4666666666665555555666666555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0029 Score=43.49 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhh
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
.+|..+..+|...|+.++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988887764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.066 Score=50.22 Aligned_cols=113 Identities=19% Similarity=0.103 Sum_probs=68.1
Q ss_pred CHhHHHHHHHHHhc-----ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHH
Q 003584 436 DHVVVSSILSACAE-----LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALI 510 (809)
Q Consensus 436 ~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li 510 (809)
|..+|..++..+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=| |.+- =..++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHH
Confidence 44444444444432 34555555566667777777777777777776654 2221 11112
Q ss_pred HHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHhH
Q 003584 511 MGCA--QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLA-ENARWYFESMD 565 (809)
Q Consensus 511 ~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 565 (809)
.+-. ...+-+-|++++++|...|+-||..|+..|++.+.+.+.. .+..++.-.|.
T Consensus 109 Q~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 109 QAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2111 1234567899999999999999999999999988776653 33334433443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0082 Score=60.72 Aligned_cols=129 Identities=11% Similarity=0.040 Sum_probs=92.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH---hHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--------CCCHH
Q 003584 540 TFVGLLFACSHAGLAENARWYFES---MDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--------EPDAT 607 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--------~p~~~ 607 (809)
.|..|.+.|.-.|+++.|+..++. +.+.||-.. ....++.|.+.+.-.|+++.|.+.++.... .-.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677889998887753 233344333 235677888888889999999988876441 13445
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFEL----E--PMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+.-+|.++|....+++.|+..+.+-+.+ + -....++..|+++|...|..+.|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6778889998888999999888765443 2 23455788999999999999999888776543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.041 Score=49.18 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003584 477 SLVLVYAKCGCINDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGL 553 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 553 (809)
++...+...|++++|..+|+-+. .| +..-|-.|...+...|++++|+..|....... +-|..++-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 34444567788888888888765 33 45667778888888888888888888888753 2344577778888888888
Q ss_pred HHHHHHHHHHhHHhhC
Q 003584 554 AENARWYFESMDKVYG 569 (809)
Q Consensus 554 ~~~a~~~~~~m~~~~~ 569 (809)
.+.|++.|+......+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887765533
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=50.34 Aligned_cols=86 Identities=20% Similarity=0.060 Sum_probs=56.5
Q ss_pred HHHHhhcCCHHHHHHHHHhCcCC----CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CCccHHhHhhhhhh
Q 003584 581 IDLLGRSGKLIEAKALLDQMVGE----PD-ATVWKALLSACRVHGDLELGERAANNLFELEPM---NAMPYVQLSNMYST 652 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~~----p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 652 (809)
..++...|+.++|..+|++.... ++ ...+-.+.+.++..|+.++|+.++++.++..|+ +......++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34555666677777776665531 11 225556777777788888888888777776666 55555666677777
Q ss_pred cCChhHHHHHHHHH
Q 003584 653 AGKWEDAARVRKLM 666 (809)
Q Consensus 653 ~g~~~~A~~~~~~m 666 (809)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 78888877766543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.058 Score=48.79 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=92.5
Q ss_pred HHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--C
Q 003584 565 DKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG---EPDATVWKALLSACRVHGDLELGERAANNLFELEPM--N 639 (809)
Q Consensus 565 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~---~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~--~ 639 (809)
.+...+.|++.+-..|...+.+.|+..||...|++... ..|....-.+.++....++...|...++++.+-.|. .
T Consensus 80 ~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 80 TEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 34446778998888999999999999999999998875 368888899999999999999999999999998875 5
Q ss_pred CccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 640 AMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.....++..|...|++.+|...|+...+.
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 667888999999999999999999988765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.014 Score=58.36 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=47.6
Q ss_pred HHHHhhcCCHHHHHHHHHhCcC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC---ccHHhHhhhhhh
Q 003584 581 IDLLGRSGKLIEAKALLDQMVG-EPDA----TVWKALLSACRVHGDLELGERAANNLFELEPMNA---MPYVQLSNMYST 652 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~-~p~~----~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 652 (809)
++.+.+.|++++|...|+.... -|+. .++--++.+|...|+++.|...|+++++..|+++ .++..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 3333444555555555554442 1322 2444455566666666666666666665555432 334445556666
Q ss_pred cCChhHHHHHHHHHHhC
Q 003584 653 AGKWEDAARVRKLMKSR 669 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~~~ 669 (809)
.|++++|.++++...+.
T Consensus 230 ~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666655543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.022 Score=51.62 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+...++..+...|+.+.|+..+++++..+|-+...|..++.+|...|+..+|.++++++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35666778888999999999999999999999999999999999999999999999998853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.055 Score=55.06 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC------CeeechHHHHHHHhcCChHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR------DVITWTALIMGCAQNGKGKEALQF 525 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l 525 (809)
+.+.|..+|+..++. ++.+...+...++.+.+.|+.+.|+.+|++.... -...|...+.--.+.|+.+.+.++
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334445555444443 3455666667777777778888888888776631 223677777777777777777777
Q ss_pred HHHHHH
Q 003584 526 YDQMLA 531 (809)
Q Consensus 526 ~~~m~~ 531 (809)
.+++.+
T Consensus 130 ~~R~~~ 135 (280)
T PF05843_consen 130 EKRAEE 135 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.038 Score=58.54 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHH
Q 003584 376 ALIDMYAKQGNLDCAFMVFNLMQD----KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSAC 447 (809)
Q Consensus 376 ~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 447 (809)
++|..|.+.|..+.+..++..-.. +|..++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 444444444444444444443332 344444444444444455555555554444444444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.43 Score=47.32 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=43.6
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCeee------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHh
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEVS------WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCF 346 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 346 (809)
...+.+.|++++|...|+.+....+.+ .-.++.+|.+.+++++|...|++..+..+.-...-+...+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 344556788888888887765432211 2235567788888888888888887765443344444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.3 Score=46.96 Aligned_cols=169 Identities=10% Similarity=0.010 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC--C--------HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHH
Q 003584 374 NNALIDMYAKQGNLDCAFMVFNLMQDK--D--------VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSI 443 (809)
Q Consensus 374 ~~~li~~y~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 443 (809)
+++|...|.-..-+++-...|+.-..+ . ....+.++..+.-.|.+.-.+.++.+..+..-+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 355555555444444444444443221 1 233456677777778888888888888886655667777777
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCChh-----HHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHh
Q 003584 444 LSACAELTVLEFGQQVHAVFLKSGGCSSLS-----VDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQ 515 (809)
Q Consensus 444 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 515 (809)
.+.-.+.|+.+.+...++...+.....+.. +.......|.-..++..|...|++++. .|++.-|.-.-....
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777888899998888888777644333333 333334455667788888888888773 455666665555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003584 516 NGKGKEALQFYDQMLARGTKPDYITFVGL 544 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 544 (809)
.|+..+|++..+.|... .|...+-+++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 78999999999999884 5665554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0088 Score=46.60 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=51.8
Q ss_pred HHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHH
Q 003584 582 DLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYV 644 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (809)
.+|.+.+++++|.+.++++.. .| ++..|......+...|++++|...+++.++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 467888899999999888875 34 5558888899999999999999999999999998765443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.5 Score=44.82 Aligned_cols=243 Identities=17% Similarity=0.135 Sum_probs=157.1
Q ss_pred hcCCHHHHHHHHHHHhhcCCccCHh--HHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHH
Q 003584 414 YHGSYEEALKYFSDMRISGICPDHV--VVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDA 491 (809)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 491 (809)
-.|+++.|.+-|+.|... |... -+..+.-.-...|+.+.++++-...-... +.-...+.+.++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357777777777777642 2211 12222223345677777776666554433 23345567788888889999999
Q ss_pred HHHHHhcC-----CCCee--echHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHH
Q 003584 492 NRVFDSMH-----TRDVI--TWTALIMGCA---QNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWY 560 (809)
Q Consensus 492 ~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~ 560 (809)
+++.+.-. ++|+. .--.|+.+-+ -.-+...|...-.+..+ +.||.+ .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 99888654 44442 2222333322 12345666666555555 688876 444556789999999999999
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH--H--HHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 561 FESMDKVYGIKPGPDHYACMIDLLGRSGKLIEA--K--ALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 561 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA--~--~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
++.+- ...|.+..+...+ +.|.|+.... . +-+..|. +.+..+.-+...+-...|++..|..-.+.+....
T Consensus 286 lE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 286 LETAW---KAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99886 4567776654433 3455543211 1 1123332 3455577778888899999999999999999999
Q ss_pred CCCCccHHhHhhhhhhc-CChhHHHHHHHHHHhC
Q 003584 637 PMNAMPYVQLSNMYSTA-GKWEDAARVRKLMKSR 669 (809)
Q Consensus 637 p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 669 (809)
|. .+.|..|.++-... |+-.++..++-+....
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 95 56888898887665 9999998888776543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.021 Score=48.19 Aligned_cols=90 Identities=23% Similarity=0.213 Sum_probs=76.2
Q ss_pred HHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC----ccHHhHhhhhhhcCC
Q 003584 582 DLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA----MPYVQLSNMYSTAGK 655 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 655 (809)
-+++..|++++|++.|.+... +..+..||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 357788999999999988764 45778999999999999999999999999999853332 258888999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 003584 656 WEDAARVRKLMKSRGI 671 (809)
Q Consensus 656 ~~~A~~~~~~m~~~~~ 671 (809)
-+.|..-|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999887764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.21 Score=51.88 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ceee----chHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003584 477 SLVLVYAKCGCINDANRVFDSMHTR---DVIT----WTALIMGCAQ---NGKGKEALQFYDQMLARGTKPDYITFVGLLF 546 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 546 (809)
.|+-.|-...+++...++.+.+... ++.. --...-++.+ .|+.++|+.++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577778888888888887743 2111 1123344555 7889999999998766666788888887776
Q ss_pred HHHc---------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH----HHH---HhCc-----CC--
Q 003584 547 ACSH---------AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAK----ALL---DQMV-----GE-- 603 (809)
Q Consensus 547 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~----~~~---~~m~-----~~-- 603 (809)
.|-. ....++|+..|.+ .+.+.|+..+--.++.++.-+|...+.. ++- .... .+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~k---gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRK---GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHH---HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 2246677777653 3466676654444555555555432222 211 1111 01
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.|--.+.+++.++.-.|+.+.|.+++++++.+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23335567778888888888888888888877764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.19 Score=48.18 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=105.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCCC--Cee--------echHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003584 475 DNSLVLVYAKCGCINDANRVFDSMHTR--DVI--------TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL 544 (809)
Q Consensus 475 ~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 544 (809)
+++|...|.-..-+++-...|+.-..| .+. .-+.++..+.-+|.+.-.+.++++.++...+-+..-...|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555444444444444433221 122 2345566666677888888889998886555566677788
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhhC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC--CCHHHHHHHHHHHHh
Q 003584 545 LFACSHAGLAENARWYFESMDKVYG----IKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE--PDATVWKALLSACRV 618 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~a~~~ 618 (809)
.+.-.+.|+.+.|..+|+...+..+ +.-...+...+...|.-++++.+|...+.+++.. .|+...|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999987765422 2222333334445566677788888888777752 344444444444455
Q ss_pred cCChhHHHHHHHHHhccCCCCCcc
Q 003584 619 HGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.|+...|++..+.+.+..|.....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchh
Confidence 677888888888888887764443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.033 Score=57.08 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..++..|...|.+.+++..|++..++.++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567788888999999999999999999999999999999999999999999999999999865
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.043 Score=51.42 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=75.5
Q ss_pred HHHHHhc--CCCCeeechHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 003584 492 NRVFDSM--HTRDVITWTALIMGCAQ-----NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHA------------- 551 (809)
Q Consensus 492 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 551 (809)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 35666677777777764 467777778889999999999999999999876542
Q ss_pred ---CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 003584 552 ---GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKL 590 (809)
Q Consensus 552 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (809)
.+-+-|+++++.|... |+.||.+++..|++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 2346788999999765 9999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.068 Score=53.40 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=61.3
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CC----HHHHHHHHHHHHhcCCh
Q 003584 549 SHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PD----ATVWKALLSACRVHGDL 622 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~----~~~~~~ll~a~~~~g~~ 622 (809)
...|++++|...|+.+.+.|.-.+ ....+.-+..+|...|++++|...|+.+... |+ ...|-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 445666677666666665432111 0234556677777777777777777776531 32 33566667778888999
Q ss_pred hHHHHHHHHHhccCCCCC
Q 003584 623 ELGERAANNLFELEPMNA 640 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~ 640 (809)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999999888765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.54 Score=48.37 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHH-HHHHHHH--HHHhc
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKP-----GPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDAT-VWKALLS--ACRVH 619 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~-~~~~ll~--a~~~~ 619 (809)
..+.|.+.+|.+.|.... ++.| +...|........+.|++.+|+.--+... +-|+. ++.-+.. ++...
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHH
Confidence 345677777777776655 4444 44567777777888899999888877766 44444 4433333 34556
Q ss_pred CChhHHHHHHHHHhccCCC
Q 003584 620 GDLELGERAANNLFELEPM 638 (809)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~ 638 (809)
+++++|.+-++++.+++.+
T Consensus 335 e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 7888999999988887654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0082 Score=47.52 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFEL----EPM---NAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666777777777777777777766543 222 24467788888888888888888887654
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2 Score=41.73 Aligned_cols=193 Identities=23% Similarity=0.205 Sum_probs=119.9
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMH-----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLF- 546 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~- 546 (809)
.........+...+.+..+...+.... ......+..+...+...+.+.++...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444455556666666666666665543 22333455555556666667777777777766432221 11222222
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CC--HHHHHHHHHHHHhc
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKP----GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PD--ATVWKALLSACRVH 619 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~--~~~~~~ll~a~~~~ 619 (809)
++...|++++|...+..... ..| ....+......+...++.++|...+.+.... ++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56777777777777776632 222 2333444444466677888888877776642 33 45777777788888
Q ss_pred CChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 620 GDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++.+.|...+...+...|.....+..++..+...|.++++...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888765556666666666667788887777766554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.72 E-value=3.3 Score=43.47 Aligned_cols=391 Identities=14% Similarity=0.042 Sum_probs=186.2
Q ss_pred cHHHHHHHH--hhCCChHHHHHHHHHHHHC--CCCC------------CcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 003584 202 AWTTMITGY--SQNGYGFKAIECFRDMRVE--GVES------------NQFTFPSILTACAAVSARDFGAQVHGCILSSG 265 (809)
Q Consensus 202 ~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 265 (809)
.|-.+..++ .+.+.+.+|++.+..-.+. +-.| |-.-=+..+.++...|.+.+|+.++..++..=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444432 4567777777777665443 2211 11112344566778999999999888887755
Q ss_pred CC----CchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003584 266 FE----ANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPS 341 (809)
Q Consensus 266 ~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 341 (809)
++ -+..+|+.++-++++.=-++- -+.+...=..-|--||-.|.+.=+.-++ -.=..+.|....+..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFST 228 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHH
Confidence 44 788899988888776432221 1111111122355566665543211111 000012222222222
Q ss_pred HHHHhhcC--CChHHHHHHHHHHHHhccCCchH-HHHHHHHHHHhcCCHHHHHHHHhhcC--------CCCHhHHHHHHH
Q 003584 342 VLNCFASN--IDLNNAKSVHSLIVKTGFEGYKF-VNNALIDMYAKQGNLDCAFMVFNLMQ--------DKDVISWTSLIT 410 (809)
Q Consensus 342 ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~ 410 (809)
++.-..-. ..+.--.+++..-...-+.|+-. +...|+.-+.+ +.+++..+-+.+. +.=+.++..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22221111 11222223333333333344322 22333333333 3333333222221 123346677777
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCccCHh----------HHHHHHHH-HhcccchhHHHHHHHHHHHhCCCCChhH--HhH
Q 003584 411 GCAYHGSYEEALKYFSDMRISGICPDHV----------VVSSILSA-CAELTVLEFGQQVHAVFLKSGGCSSLSV--DNS 477 (809)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 477 (809)
...+.++..+|.+.+.-+.-. .|+.. ++..++.. =....++..-..++..+....+....-+ .--
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~ 384 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVF 384 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 777778877777776655432 23221 11111100 0000111111222222222222111000 000
Q ss_pred HHHHHHhcCC-HHHHHHHHHhcC---CCCeeechHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCCHHH----HH
Q 003584 478 LVLVYAKCGC-INDANRVFDSMH---TRDVITWTALI----MGCAQN---GKGKEALQFYDQMLARGTKPDYIT----FV 542 (809)
Q Consensus 478 li~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t----~~ 542 (809)
-..-+-+.|. -++|..++..+. .-|...-|... .+|.+. ....+-+++-+-..+.|++|-.+. -+
T Consensus 385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 1122333444 677777777665 33443333322 122221 123333444444556777774432 23
Q ss_pred HHHHH--HHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHH
Q 003584 543 GLLFA--CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKA 611 (809)
Q Consensus 543 ~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 611 (809)
.|..| +...|++.++.-+-..+. .+.|++.+|..+.-.+....+++||.+++...| |+..+|++
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 33333 455688888876654443 678888888888888888888889998888886 56666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=3.3 Score=42.48 Aligned_cols=267 Identities=16% Similarity=0.098 Sum_probs=154.0
Q ss_pred CCcccHHHHHHHhh--cCCChHHHHHHHHHHHHhccCCchHH--HHHHHHHHHhcCCHHHHHHHHhhcCCC---CHhHHH
Q 003584 334 IDDFTYPSVLNCFA--SNIDLNNAKSVHSLIVKTGFEGYKFV--NNALIDMYAKQGNLDCAFMVFNLMQDK---DVISWT 406 (809)
Q Consensus 334 p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~ 406 (809)
.|...+..++.+-. -.|+.+.|++-|+.|... |.... ...|.-.--+.|..+.|...-+..-+. -...|.
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~ 192 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR 192 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 34444444444332 236666666666655531 11111 111222223567777777766655432 235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc-CCccCHh--HHHHHHHHHhc---ccchhHHHHHHHHHHHhCCCCChhHHh-HHH
Q 003584 407 SLITGCAYHGSYEEALKYFSDMRIS-GICPDHV--VVSSILSACAE---LTVLEFGQQVHAVFLKSGGCSSLSVDN-SLV 479 (809)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li 479 (809)
+.+...+..|+++.|+++.+.-+.. -+.++.. .-..+|.+-+. ..+...++..-.+..| +.|+..-.. .-.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence 8888899999999999999877653 2345432 22334433221 1234444444444443 334332221 124
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHccCCHH
Q 003584 480 LVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYDQMLA-RGTKPDY-ITFVGLLFACSHAGLAE 555 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~ 555 (809)
..|.+.|++.++-.+++.+- +|.+..| ..|....-.+.++.-+++... ..++||. .+...+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 56788899999999888876 3443333 334443333444444444332 2256765 46777778888888888
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCcCCCCHHHHHHH
Q 003584 556 NARWYFESMDKVYGIKPGPDHYACMIDLLGRS-GKLIEAKALLDQMVGEPDATVWKAL 612 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~l 612 (809)
.|..--+... ...|....|..|.+.-.-. |+-.++...+-+....|....|...
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ad 401 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTAD 401 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccccc
Confidence 8877665544 5678888888888876554 8888888888877766666666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.75 Score=39.33 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=84.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 592 (809)
+.-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+-|.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34567788888888887763 234445555544444445555566666654443332 3344444
Q ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCc
Q 003584 593 AKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIR 672 (809)
Q Consensus 593 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 672 (809)
....+-.+. .+......-+.+...+|.-+.-.+++..+.+.+..+|.....++++|.+.|+..++.+++.+.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444333322 223334455677888999999889999888766668899999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.23 Score=50.67 Aligned_cols=131 Identities=12% Similarity=-0.032 Sum_probs=88.3
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHh----hCCCCCh
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQML----ARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKV----YGIKPGP 574 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~~p~~ 574 (809)
..|..|.+.|.-.|+++.|+..-+.-+ +-|-+.. ...+..+.+++.-.|+++.|.+.|+..... ..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666677777888888887654322 2232222 246778888888899999999888654321 0111223
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCcC---C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 575 DHYACMIDLLGRSGKLIEAKALLDQMVG---E-----PDATVWKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 575 ~~~~~li~~~~~~g~~~eA~~~~~~m~~---~-----p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
....+|.+.|.-...+++|+.++.+-.. + ....++-+|..++...|..+.|+..+++.++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455677788777888889888876442 1 3445777899999999999999988887655
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.021 Score=45.16 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG--------EPD-ATVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~--------~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
|+.+...|.+.|++++|++.+++... .|+ ..++..+...+...|+.++|++.+++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444444444444443331 122 346677777777777777777777776543
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.25 E-value=6.6 Score=43.97 Aligned_cols=359 Identities=12% Similarity=-0.031 Sum_probs=174.3
Q ss_pred HHHcCCCchhHHHHHHH--------HHHcCCCCCcccHHH-----HHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH
Q 003584 107 GYSNYGLDIEAFELFWQ--------MQLEGYRPSQYTLDN-----VLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG 173 (809)
Q Consensus 107 ~~~~~g~~~~A~~~~~~--------m~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 173 (809)
++.+.-++++-..+-.. +..-|++.+..-|.. +|.-+...+.+..|.++-..+-..-.+. ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 34444555554433333 234466655554443 4556666777777777766553222122 567777
Q ss_pred HHHhhhcCCCh---hHHHHHhhhCCCC-CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCC----CCCcchHHHHHHHH
Q 003584 174 LVDMYAKCKCI---FEAEYLFKMFPDG-KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGV----ESNQFTFPSILTAC 245 (809)
Q Consensus 174 li~~y~~~g~~---~~A~~~f~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~~~ 245 (809)
...-+.+..+. +-+..+=+++... ...++|..+.+--.+.|+++-|..+++.=...+- -.+-.-+...+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 77777665332 2223333333331 3567888888888899999999888764322211 11233355556666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC-CCeeeHHHHHHHHHhcCChhHHHHHH
Q 003584 246 AAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI-DNEVSWNSMIVGFARQGFHKEALSLF 324 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 324 (809)
...|+.+...+++-++...- +...+... ..+...|..++..... .|..+ +..+.+.++-.+++..|
T Consensus 557 ies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~ 623 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASF 623 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhh
Confidence 66676666666555544321 00111100 1122233333322111 11110 11111222222222222
Q ss_pred HHHH--H-CCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHH-----------HhccCCchHHHHHHHHHHHhcCCHHHH
Q 003584 325 KKMH--A-RDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIV-----------KTGFEGYKFVNNALIDMYAKQGNLDCA 390 (809)
Q Consensus 325 ~~m~--~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-----------~~g~~~~~~~~~~li~~y~~~g~~~~A 390 (809)
..-. . ..+.+-........+++++........+..+.-. +.|..-...+.+--+.-+...|+..+|
T Consensus 624 ~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a 703 (829)
T KOG2280|consen 624 HLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRA 703 (829)
T ss_pred hhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHH
Confidence 1100 0 0011122222333344444443222222211111 112112222233344445667788888
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCC
Q 003584 391 FMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCS 470 (809)
Q Consensus 391 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 470 (809)
.++-.+..-+|-..|---+.+++..+++++-+++-+.+.. +.-|.-+..+|.+.|+.++|..+....-.
T Consensus 704 ~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~----- 772 (829)
T KOG2280|consen 704 EQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG----- 772 (829)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----
Confidence 8888887777777777777788888888776666555441 34455566667777776666665443211
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
+.-.+.+|.++|++.+|.++
T Consensus 773 ----l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 773 ----LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ----hHHHHHHHHHhccHHHHHHH
Confidence 01345566666666665544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.24 E-value=5.4 Score=47.05 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=89.4
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHH
Q 003584 385 GNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFL 464 (809)
Q Consensus 385 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 464 (809)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ .|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34444444444443 122333333334445555555444 57777776666655431 11
Q ss_pred HhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 003584 465 KSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYIT--FV 542 (809)
Q Consensus 465 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~ 542 (809)
+.. .++--.-+|.++|+.++|.+.+ ...|++.+|+.+-.+|.. .-|... -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 111 1222234688888888886554 456888888888777642 222222 24
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCc
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
.|..-+...++.-+|-++......+ +.--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5667777888888887777655432 2334566777888888887765544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=3.1 Score=39.89 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcC-------CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCCCCccH
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVG-------EPDAT-VWKALLSACRVHGDLELGERAANNLFEL----EPMNAMPY 643 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~-------~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~----~p~~~~~~ 643 (809)
.|......|.|..+++||-..|.+-.. -|+.. .+-+.+-.+....++..|+..++.-.+. .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 344455667777888887776655432 13332 3445555566667888888888876553 46666777
Q ss_pred HhHhhhhhhcCChhHHHHHH
Q 003584 644 VQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~ 663 (809)
..|+..| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777665 457777776554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.084 Score=45.92 Aligned_cols=94 Identities=12% Similarity=0.177 Sum_probs=60.1
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAG 552 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 552 (809)
.++.+++.++++.|+++....+++..=..|+. +-...+. --....+.|+..++.+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 34556666667777777666666554321111 1011111 1122346788888888888888888
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 003584 553 LAENARWYFESMDKVYGIKPGPDHYACMID 582 (809)
Q Consensus 553 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 582 (809)
++..|.++.+...+.|+++-+...|..|+.
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888888888888888887777777776654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.23 Score=52.43 Aligned_cols=79 Identities=14% Similarity=-0.014 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 590 LIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 590 ~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
..+|.++.++... +.|+.....+..+....|+.+.|...|+++..++|+.+.++...+......|+.++|.+.+++..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3445555544443 34566666666666666667777777777777777777777777777777777777777776644
Q ss_pred h
Q 003584 668 S 668 (809)
Q Consensus 668 ~ 668 (809)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.00 E-value=8.3 Score=43.79 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=76.9
Q ss_pred hHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHH----HHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhh
Q 003584 69 TWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIY----GYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCS 144 (809)
Q Consensus 69 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 144 (809)
....-++.+.+-.-++.|..+-..-..+ ..+--.+.. -+-+.|++++|...|-+-... +.| +.+++-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 3456677888888888888887654432 222223333 345789999999888776532 233 45666665
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC
Q 003584 145 LKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD 196 (809)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 196 (809)
....+..-...++.+.+.|+. +...-+.|+.+|.|.++.+.-.+..+..+.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~ 459 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK 459 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC
Confidence 555566666667777777754 344556777888888777776666665553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.48 Score=48.84 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhc
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTA 653 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (809)
.+..|.-.|.+.+.+.+|++.-++... ++|.-..--=..+|...|+++.|...|+++++++|+|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 456677778888888888888877764 456666666788999999999999999999999999998888888887777
Q ss_pred CChhHH-HHHHHHHHhC
Q 003584 654 GKWEDA-ARVRKLMKSR 669 (809)
Q Consensus 654 g~~~~A-~~~~~~m~~~ 669 (809)
....+. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 766655 7888888654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.85 Score=45.28 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCcC-CC-CHHHHHH
Q 003584 537 DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSG---KLIEAKALLDQMVG-EP-DATVWKA 611 (809)
Q Consensus 537 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~m~~-~p-~~~~~~~ 611 (809)
|...|..|..+|...|+.+.|...|....+- ..++...+..+..++..+. ...++.++|+++.. +| |+.+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4457777777777777777777777766542 2234445555555444332 34567788887774 34 4557777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
|..++...|++.+|...++.|+++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77888999999999999999998877654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.82 E-value=9.3 Score=43.44 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHH----HHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 003584 174 LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMI----TGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVS 249 (809)
Q Consensus 174 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 249 (809)
-+++..+...++-|..+-+.-.. |...-..+. +-+.+.|++++|.+.|-+-... +.| ..++.-+-...
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 34444555555555555544332 222222222 3345678888888877665422 222 23444444444
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC
Q 003584 250 ARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE 297 (809)
Q Consensus 250 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 297 (809)
.+..--.+++.+.+.|+. +...-+.|+..|.|.++.++-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555555666777777743 44455678888888888887777766555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.16 Score=53.54 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDA----TVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~----~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
...+..+..+|.+.|++++|+..|++... .|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555666666666666666666665443 3443 24677777777777777777777777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=1 Score=43.37 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=75.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 003584 510 IMGCAQNGKGKEALQFYDQMLARGTK-PD-YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS 587 (809)
Q Consensus 510 i~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 587 (809)
...+.+.|++.+|...|+++...-.. |- ......++.++.+.|++++|...++...+.+.-.|... +.....+++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~~ 90 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSYY 90 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHHH
Confidence 34456778888888888888764211 11 12455667777788888888888888777654444331 11111111100
Q ss_pred CCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-----------------cHHhHhhhh
Q 003584 588 GKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM-----------------PYVQLSNMY 650 (809)
Q Consensus 588 g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l~~~~ 650 (809)
...... + ......+....|...++.+++.-|+++- .-..++..|
T Consensus 91 ~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 1112223345566666666666665442 223567889
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 003584 651 STAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 651 ~~~g~~~~A~~~~~~m~~~ 669 (809)
.+.|.+..|..-++.+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 9999999999999998765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.88 Score=43.80 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=93.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CC----eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcc
Q 003584 480 LVYAKCGCINDANRVFDSMHT--RD----VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI--TFVGLLFACSHA 551 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~ 551 (809)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++.++. -|+.. -+...+.+.+.-
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 345567888888888887762 22 124455777888899999999999998874 44432 222222222211
Q ss_pred -------------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHh
Q 003584 552 -------------GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRV 618 (809)
Q Consensus 552 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~ 618 (809)
+...+|...|+.+ +.-|-......+|...+..+...--. ---.+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 1223344444443 44444445555555554443311000 11124566788
Q ss_pred cCChhHHHHHHHHHhccCCCCCc---cHHhHhhhhhhcCChhHHH
Q 003584 619 HGDLELGERAANNLFELEPMNAM---PYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 660 (809)
.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999988887544 4567788888888888543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.7 Score=46.11 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=106.4
Q ss_pred eec--hHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHc---------cCCHHHHHHHHHHhH
Q 003584 504 ITW--TALIMGCAQN-----GKGKEALQFYDQMLA-RGTKPDYI-TFVGLLFACSH---------AGLAENARWYFESMD 565 (809)
Q Consensus 504 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 565 (809)
..| ..++.|.... -..+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 5566655442 134678889999882 23677754 44444333221 223456666665555
Q ss_pred HhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 566 KVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 566 ~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.+.| |......+..++.-.|+++.|...|++... .|| +.+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 556666777777888889999999998875 465 4588888888999999999999999999999976554
Q ss_pred HH--hHhhhhhhcCChhHHHHHHHH
Q 003584 643 YV--QLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 643 ~~--~l~~~~~~~g~~~~A~~~~~~ 665 (809)
-. ..+++|+..+ .++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 33 3445676655 4666666543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.049 Score=34.74 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
.+|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999998863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=4.9 Score=38.94 Aligned_cols=164 Identities=21% Similarity=0.167 Sum_probs=114.1
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CCe-eechHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHT--RDV-ITWTALIM-GCAQNGKGKEALQFYDQMLARGTKP----DYITFV 542 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~ 542 (809)
....+..+...+...+.+..+.+.+..... ++. ..+..... .+...|++++|...|++... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 344444555556666667777777776653 222 22333333 67888999999999998855 343 233444
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhc
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVH 619 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~ 619 (809)
.....+...++.+++...+...... ... ....+..+...+...+.+++|...+..... .|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 4555577788999999999887753 222 367777888888999999999999988775 344 45666666666677
Q ss_pred CChhHHHHHHHHHhccCCC
Q 003584 620 GDLELGERAANNLFELEPM 638 (809)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~ 638 (809)
++.+.+...+++.++..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7899999999999999886
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.2 Score=47.37 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeEEEEC
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPM--NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETN 683 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 683 (809)
..+-..|...+++.|+.++|++.++.+++..|. +-..+..|+..|...+.+.++..++.+--+....|....+|..-.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334455677778888888888888888877664 445677888888888888888888877654444444433331100
Q ss_pred CEEEEEEeCCCCCcc-------hHHHHHHHHHHHHHHHHcCCccCC
Q 003584 684 SQVHIFISEDRGHPL-------RTDIYSKIDEIMLLIKEAGYVPDM 722 (809)
Q Consensus 684 ~~~~~~~~~~~~~~~-------~~~i~~~l~~l~~~~~~~g~~~~~ 722 (809)
-+ .-..+|+..|. .......++-+.+.++..+++|+=
T Consensus 339 Lk--aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 339 LK--ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HH--HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 00 00012221121 122233456677778888888853
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.081 Score=33.61 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999988864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.35 Score=52.26 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=90.7
Q ss_pred HHHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 003584 512 GCAQNGKGKEALQFYDQ-MLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKL 590 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~-m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (809)
....+|+++++.++... -.-..++ ..-...++.-+.+.|..+.|.++-..-..+ .++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 34567888887776641 1111122 334667788888999999999876443322 4667789999
Q ss_pred HHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 591 IEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 591 ~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+.|.++.++. ++...|..|......+|+++.|++++++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999987665 47889999999999999999999999964 457788889999999888777777766665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.20 E-value=8.5 Score=40.40 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=98.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 003584 472 LSVDNSLVLVYAKCGCINDANRVFDSMH-----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV-GLL 545 (809)
Q Consensus 472 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll 545 (809)
..++..+++.-.+..-++.|..+|-+.. .+++..++++|.-++ .|++.-|..+|+--... -||...|. -.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4556666777777777888888887765 357778888887666 46777788888765552 56665443 456
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHHhcCC
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPG--PDHYACMIDLLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACRVHGD 621 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~ 621 (809)
.-+...++-+.|+.+|+....+ +..+ ...|..|++-=..-|++..+..+=+++... |...+...+.+-|....+
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhcc
Confidence 6677788888888888855442 2333 567888888888889998888776666532 544454555555655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.2 Score=49.04 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=105.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhHHhhCCCCChHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARG-TKPDY-----ITFVGLLFACSH----AGLAENARWYFESMDKVYGIKPGPDH 576 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~ 576 (809)
..++....-.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ....+.|.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 345555556677777777776655422 21111 123333333222 45678888888888765 367665
Q ss_pred HHHH-HHHHhhcCCHHHHHHHHHhCcCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHH-hHhh
Q 003584 577 YACM-IDLLGRSGKLIEAKALLDQMVGE------PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYV-QLSN 648 (809)
Q Consensus 577 ~~~l-i~~~~~~g~~~eA~~~~~~m~~~------p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~ 648 (809)
|... ...+...|++++|.+.|+++... -....+--+...+...+++++|...+.++.+...-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5433 35677789999999999876531 23335556777888899999999999999997766555555 4466
Q ss_pred hhhhcCCh-------hHHHHHHHHHHhC
Q 003584 649 MYSTAGKW-------EDAARVRKLMKSR 669 (809)
Q Consensus 649 ~~~~~g~~-------~~A~~~~~~m~~~ 669 (809)
+|...|+. ++|.+++++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 67788888 8888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.76 Score=40.46 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHhhcCCHHHHHHHHHhCcCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 582 DLLGRSGKLIEAKALLDQMVGE-P----DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~~-p----~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
....+.|++++|.+.|+.+..+ | ...+--.|+.+|...|++++|...+++.+++.|.++.+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3345678888888888776642 2 23356678889999999999999999999999887653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.49 Score=46.34 Aligned_cols=98 Identities=26% Similarity=0.268 Sum_probs=63.5
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHH
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDY----ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACM 580 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 580 (809)
|+.-+. +.+.|++.+|...|...++.. |+. ..+-.|..++...|++++|..+|..+.+.+.-.|.. +.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444433 345677888888888877742 322 245567777777778888777777777766555543 666666
Q ss_pred HHHHhhcCCHHHHHHHHHhCcCC-CCH
Q 003584 581 IDLLGRSGKLIEAKALLDQMVGE-PDA 606 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~~-p~~ 606 (809)
.....+.|+.++|...+++...+ |+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 67777777777777777766643 443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.6 Score=41.84 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=49.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 592 (809)
....|+..+|..+|+...... +-+...-..+..++...|+++.|..++..+-.+ --.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCC
Confidence 345556666666666555531 112233344455555555555555555443211 000000111122333444444443
Q ss_pred HHHHHHhCcCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003584 593 AKALLDQMVGEP-DATVWKALLSACRVHGDLELGERAANNLF 633 (809)
Q Consensus 593 A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~ 633 (809)
..++-++.-..| |...--.|...+...|+.+.|.+.+-.++
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333 33344444444455555555444443333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.61 E-value=2.1 Score=38.24 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Q 003584 539 ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS-GKLIEAKALLDQMVGEPDATVWKALLSACR 617 (809)
Q Consensus 539 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 617 (809)
.....++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+- .++..|..++..+.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344455566666666666666544421 12223333333 6677777776652 25556666665554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.61 Score=42.14 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=38.7
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH----HhhCCCCChHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMD----KVYGIKPGPDH 576 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 576 (809)
..++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+. +..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555666777777777777776641 3345567777777777777777777766542 34577776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.41 Score=48.19 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=68.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-----C-CCH------
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKP----GPDHYACMIDLLGRSGKLIEAKALLDQMVG-----E-PDA------ 606 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-----~-p~~------ 606 (809)
++..|....+.++++.+.|+...+--.-.. ...+|..|...|++..++++|.-+..+... . .|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555667777777765543211111 124666777777777777776655544331 0 111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCC----CccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFEL--EPMN----AMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.+.--|.-+++..|..-.|.+..+++.++ ...| ......++++|...|+.|.|..-++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12223445677777777777776666443 2222 22344677777777777776665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.38 E-value=5.2 Score=35.68 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=41.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhH
Q 003584 240 SILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKE 319 (809)
Q Consensus 240 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (809)
.++..+...+........++.+++.+ ..+....|.++..|++.. .++....++. ..+......++..+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 44444444455555555555555554 355667777777777653 2333333331 1222333334444555555555
Q ss_pred HHHHHHHH
Q 003584 320 ALSLFKKM 327 (809)
Q Consensus 320 A~~~~~~m 327 (809)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.38 Score=47.06 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=48.2
Q ss_pred hcCCHHHHHHHHHhCcC-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CccHHhHhhhhhhcCC
Q 003584 586 RSGKLIEAKALLDQMVG-------EPDATVWKALLSACRVHGDLELGERAANNLFELEPMN---AMPYVQLSNMYSTAGK 655 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~-------~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 655 (809)
+.|++.+|...|..... .||+.-| |+.++...|+++.|...|..+.+-.|++ |..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34445555554444332 1445555 5666666666666666666666654443 3456666677777777
Q ss_pred hhHHHHHHHHHHhC
Q 003584 656 WEDAARVRKLMKSR 669 (809)
Q Consensus 656 ~~~A~~~~~~m~~~ 669 (809)
.++|..+++...++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.18 E-value=18 Score=40.90 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhc
Q 003584 271 YVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFAS 348 (809)
Q Consensus 271 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 348 (809)
.++...|+.+.-.|++++|....-.|...+..-|.-.+..+...++......+ +.......+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 34556666666677777777777766666666676666666666655443322 2221222344455555555544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.2 Score=48.25 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHH
Q 003584 278 DMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKS 357 (809)
Q Consensus 278 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 357 (809)
+...++|+++.|.++-++.. +...|..|.....+.|+++-|.+.|.+..+ +..++-.+...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34456677777777766554 445777777777777777777777776532 4445555555566555555
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 003584 358 VHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFN 395 (809)
Q Consensus 358 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 395 (809)
+.......|- +|.-..++.-.|++++..+++.
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5555544441 2333334444555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.93 Score=39.46 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhH--------------HhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 537 DYITFVGLLFACSHAGLAENARWYFESMD--------------KVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 537 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
|..++.+++.++++.|+++....+.+..- ....+.|+.....+++.+|+..|++..|+++++....
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556666666666666666666654321 1123445666666666666666777666666655442
Q ss_pred ----CCCHHHHHHHHHHHHh
Q 003584 603 ----EPDATVWKALLSACRV 618 (809)
Q Consensus 603 ----~p~~~~~~~ll~a~~~ 618 (809)
+-+...|..|+.-+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 2234566666654433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.72 E-value=4.1 Score=40.50 Aligned_cols=121 Identities=11% Similarity=0.029 Sum_probs=87.5
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHH---HHHHHHhcCCh
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKA---LLSACRVHGDL 622 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~ 622 (809)
......|+..+|...|...... ..-+...-..|+..|...|+.++|..++..++.+-...-|.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456788999999999887753 223456677889999999999999999999997533333333 22333333333
Q ss_pred hHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.+... +++-+..+|+|...-..|+..|...|+.++|.+.+-.+..+
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33222 34455678999999999999999999999999888777655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.57 E-value=11 Score=40.40 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKP--DYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
+.....+.|+.+||++.|++|.+.. ++ +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4455556677777777777776542 12 1224556666666666666666666544
|
The molecular function of this protein is uncertain. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.3 Score=38.47 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=34.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 003584 515 QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAK 594 (809)
Q Consensus 515 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 594 (809)
+.|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|...|........-.|.+ +--....|...|+.++|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHHhCCHHHHH
Confidence 4455555555555444421 1111222333334444455555555554332211111222 222344445555555555
Q ss_pred HHHHhCcC
Q 003584 595 ALLDQMVG 602 (809)
Q Consensus 595 ~~~~~m~~ 602 (809)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.78 E-value=4.5 Score=40.63 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHHHH
Q 003584 485 CGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV----GLLFACSHAGLAENA 557 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~----~ll~a~~~~g~~~~a 557 (809)
.|+..+|...++++. +.|..+|+---.+|..+|+.+.-...+++.... ..||...|. .+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 567777777777766 357788888888888888888888888887754 355554333 223345677888888
Q ss_pred HHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 003584 558 RWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVGEPD-------ATVWKALLSACRVHGDLELGERAA 629 (809)
Q Consensus 558 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~a~~~~g~~~~A~~~~ 629 (809)
.+.-++.. .+.| |.-.-.++...+.-.|+..|+.++..+-...-+ ..-|..-+ .+...+.++.|+++|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHH
Confidence 88776554 3333 333444666777788888888888877553211 11122221 233446788888888
Q ss_pred HHH--hccCCCCCc
Q 003584 630 NNL--FELEPMNAM 641 (809)
Q Consensus 630 ~~~--~~~~p~~~~ 641 (809)
+.- -+++.+|+.
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 643 245555553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.76 E-value=13 Score=36.28 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=88.0
Q ss_pred HhcCCHHHHHHHHHhcCCCCe---e---echHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH---cc-
Q 003584 483 AKCGCINDANRVFDSMHTRDV---I---TWTALIMGCAQNGKGKEALQFYDQMLAR-GTKPDYITFVGLLFACS---HA- 551 (809)
Q Consensus 483 ~k~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~---~~- 551 (809)
.+.|++++|.+.|+.+....+ . +--.++-++-+.+++++|+..+++.... +-.||. -|...|.+++ ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 356888888888888773322 2 2223445566788888888888887763 222332 3333333333 21
Q ss_pred ---CCHH---HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHH--HHHHHHHHHhcCChh
Q 003584 552 ---GLAE---NARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATV--WKALLSACRVHGDLE 623 (809)
Q Consensus 552 ---g~~~---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~~~ll~a~~~~g~~~ 623 (809)
.+.. +|..-|+.+.++| |+. .-..+|..-+.... |... =.+...-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 1222 2333333333322 221 11111111111110 1110 112456677888888
Q ss_pred HHHHHHHHHhccCCCCCc---cHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 624 LGERAANNLFELEPMNAM---PYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.|..-++.+++.-|+.+. .+..|..+|.+.|..++|.+.-+-+..
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 888888888877655443 355667778888888888777666554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.73 E-value=1 Score=43.86 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHHHHHhcC--CCCeeechHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 003584 491 ANRVFDSMH--TRDVITWTALIMGCAQN-----GKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAG----------- 552 (809)
Q Consensus 491 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 552 (809)
.+..|.... ++|-.+|-+++..+..+ +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566666 66777888888887654 556667777899999999999999999998765432
Q ss_pred -----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 003584 553 -----LAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLI 591 (809)
Q Consensus 553 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (809)
+-+=++.+++.|... |+.||.++-..|+.+++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccH
Confidence 223478899999754 99999999999999999998643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.51 E-value=34 Score=40.83 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=64.0
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeechHHH----HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003584 483 AKCGCINDANRVFDSMHTRDVITWTALI----MGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENAR 558 (809)
Q Consensus 483 ~k~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 558 (809)
-+.|.+.+|..++ .+|...+.... .-+...+.+++|.-+|+..-+ ..-.+.+|...|+|++|.
T Consensus 919 ~kh~Ly~~aL~ly----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 919 KKHGLYDEALALY----KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred Hhcccchhhhhee----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 3444444444444 33443333333 333445666666666654322 223466778888899888
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCC
Q 003584 559 WYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604 (809)
Q Consensus 559 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 604 (809)
.+..++.. +-.--..+-..|+.-+..+++.-||-++..+....|
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 88776532 111122344678888889999999999888877554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.5 Score=42.72 Aligned_cols=99 Identities=7% Similarity=0.001 Sum_probs=68.2
Q ss_pred HHHHHhhhCC--CCCcchHHHHHHHHHc-----CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCc--------
Q 003584 85 EAKKLFNETP--FKNFFTWSSLIYGYSN-----YGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLL-------- 149 (809)
Q Consensus 85 ~A~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------- 149 (809)
..+..|...+ ++|-.+|-.++.-+.. .+..+-....+..|.+-|+.-|..+|..||+.+-+..-+
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 5666777777776654 345566667788899999999999999998877654322
Q ss_pred --------hHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCC
Q 003584 150 --------QRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKC 183 (809)
Q Consensus 150 --------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 183 (809)
.-+..++++|...|+.||-.+-..|++++.+.+.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2355667777777777777777777777766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.34 E-value=4.1 Score=35.96 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=52.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPD---YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGK 589 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 589 (809)
..+.|++++|.+.|+.+... .+.. ...-..++.++.+.+++++|...+++..+.+--.|+ ..|.....+++.-..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 34556666666666666553 1111 123445556666666666666666666544322232 223222222222222
Q ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 590 LIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 590 ~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.+.+ +..+. ..=+..+....|...|++++..-|++.
T Consensus 98 ~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1111 11111 001111235677788888888888754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=19 Score=36.57 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH----HHHHHHHHHHhhcCCccCHhHHHHHH
Q 003584 369 GYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSY----EEALKYFSDMRISGICPDHVVVSSIL 444 (809)
Q Consensus 369 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 444 (809)
+|..+.-..+..+...|..+....+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 44445555555555555443333333333445555555556666666652 3556666555332 34444444444
Q ss_pred HHHhc
Q 003584 445 SACAE 449 (809)
Q Consensus 445 ~a~~~ 449 (809)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.9 Score=43.09 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=117.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH----HHHHHHhhcCCH
Q 003584 515 QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA----CMIDLLGRSGKL 590 (809)
Q Consensus 515 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 590 (809)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++.+... -.|+...|+ .+.-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478999999999999886 6777788888889999999999999888887653 344543333 334456689999
Q ss_pred HHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCccHHhHhhhhhhcCChhHHHHHHH
Q 003584 591 IEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPM----NAMPYVQLSNMYSTAGKWEDAARVRK 664 (809)
Q Consensus 591 ~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (809)
++|.+.-++..+ +.|.-.-.++.......|+..++.+..++--..=.. -...|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999998875 345556667778888999999998876654322111 12346666777888899999999999
Q ss_pred HHHhCCCccCCc
Q 003584 665 LMKSRGIRKEPG 676 (809)
Q Consensus 665 ~m~~~~~~~~~~ 676 (809)
.-.-+.+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876555555554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=20 Score=36.37 Aligned_cols=76 Identities=9% Similarity=0.008 Sum_probs=41.3
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFAC 548 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 548 (809)
.++..+-..-+.++++.|+.+..-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3444555555666666666433333333333333 233566677777775 577777777763 45665555555544
Q ss_pred H
Q 003584 549 S 549 (809)
Q Consensus 549 ~ 549 (809)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.57 Score=43.18 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=71.2
Q ss_pred HHHhhcCCHHHHHHHHHhCcC--C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC
Q 003584 582 DLLGRSGKLIEAKALLDQMVG--E-----PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~--~-----p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
+-+.+.|.+++|..-|..... + -..+.|..-..+..+.+.++.|+....+++++.|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 345567778888777766553 1 123456666677889999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 003584 655 KWEDAARVRKLMKSRG 670 (809)
Q Consensus 655 ~~~~A~~~~~~m~~~~ 670 (809)
++++|..-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.64 E-value=4.1 Score=44.91 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcCC--CCeeechHHH-HHHHhcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHH
Q 003584 486 GCINDANRVFDSMHT--RDVITWTALI-MGCAQNGKGKEALQFYDQMLARGT---KPDYITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 486 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~ 559 (809)
...+.|.++++.+.+ |+...|.-.- ..+...|+.++|++.|++...... +.....+--+...+.-..++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445556666665553 4444443322 223445666666666665442100 0111222233334444555555555
Q ss_pred HHHHhHH
Q 003584 560 YFESMDK 566 (809)
Q Consensus 560 ~~~~m~~ 566 (809)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.56 E-value=18 Score=35.37 Aligned_cols=138 Identities=18% Similarity=0.226 Sum_probs=83.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 003584 508 ALIMGCAQNGKGKEALQFYDQMLARGT-KP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG 585 (809)
Q Consensus 508 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 585 (809)
.=+..-.+.|++++|.+.|+.+..+-. .| ...+...++-++-+.++.++|....++....++-.|+.. |...+.+++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH
Confidence 334445677888888888888886421 11 234566677778888888888888888887776666653 222233332
Q ss_pred hcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC-----------------ccHHhHh
Q 003584 586 RSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA-----------------MPYVQLS 647 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~-----------------~~~~~l~ 647 (809)
.|..+.. ..|.. -...|...++.+++.-|++. +.=..++
T Consensus 118 ----------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Ia 174 (254)
T COG4105 118 ----------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIA 174 (254)
T ss_pred ----------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 01111 12334444455555555432 1223678
Q ss_pred hhhhhcCChhHHHHHHHHHHhC
Q 003584 648 NMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.|.+.|.|..|..-++.|.+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc
Confidence 8899999999999999999876
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.53 E-value=31 Score=37.98 Aligned_cols=410 Identities=12% Similarity=0.072 Sum_probs=218.1
Q ss_pred CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003584 198 KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPS-ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSAL 276 (809)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 276 (809)
-+...|+.+|..--+....+.+...+..++.. .|..+-|-. ...-=.+.|..+.+.++|+..++. ++.++..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 46678999888776666777777788877743 455544332 222234677888888888877754 45666666666
Q ss_pred HHHHH-hCCChHHHHHHHhccCC------CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhh--
Q 003584 277 IDMYA-KCGDLDSARRLLEYSEI------DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFA-- 347 (809)
Q Consensus 277 i~~y~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-- 347 (809)
+.... ..|+.+..++.|+.... .....|...|.--...+++.....+|++..+.... .|+....-+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~----~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH----QLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh----HhHHHHHHHHHH
Confidence 55444 44666677777765432 24455777777777777788888888877653211 1111111110
Q ss_pred -cCC------ChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHh-cCCHH
Q 003584 348 -SNI------DLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAY-HGSYE 419 (809)
Q Consensus 348 -~~~------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-~g~~~ 419 (809)
+.. ..++..++-...... ..-...+ +....+..-+.--.. .+..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~--------------~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQ--------------EPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhccccc--------------ChhHHHHHHHhhccCccchhh
Confidence 000 011111110000000 0000000 011111111110000 01111
Q ss_pred HHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHh-------CCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 420 EALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKS-------GGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 420 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
++.....+.... -.. .+-..-.....+..++.-++. -..++..+|..-++--.+.|+.+.+.
T Consensus 249 ~~~~~l~~~~~~----~~~-------~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIVSI----HEK-------VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred HHHHHHHHHHHH----HHH-------HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 111111110000 000 000000111111112211211 11234556777777778888888888
Q ss_pred HHHHhcCCCC---eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC
Q 003584 493 RVFDSMHTRD---VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG 569 (809)
Q Consensus 493 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 569 (809)
-+|+...-|= ...|-..+.-....|+.+-|..++....+--.+-...+-..-..-+-..|+.+.|..+++.+.+.+
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~- 396 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY- 396 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-
Confidence 8888876431 223444444444458888887777666554333233333222333567789999999999998753
Q ss_pred CCCCh-HHHHHHHHHHhhcCCHHHHH---HHHHhCcC-CCCHHHHHHHHH-----HHHhcCChhHHHHHHHHHhccCCCC
Q 003584 570 IKPGP-DHYACMIDLLGRSGKLIEAK---ALLDQMVG-EPDATVWKALLS-----ACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 570 ~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~m~~-~p~~~~~~~ll~-----a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
|+. ..-.--+....|.|..+.+. +++..... +-+..+...+.- -+...++.+.|..++.++.+..|++
T Consensus 397 --pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 397 --PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred --CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 654 23334466778899999888 55554442 233333333332 2456688999999999999999999
Q ss_pred CccHHhHhhhhhhcCC
Q 003584 640 AMPYVQLSNMYSTAGK 655 (809)
Q Consensus 640 ~~~~~~l~~~~~~~g~ 655 (809)
-..|..+++.....+-
T Consensus 475 k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999888776663
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.40 E-value=18 Score=38.15 Aligned_cols=147 Identities=14% Similarity=0.013 Sum_probs=76.5
Q ss_pred CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC--hHH
Q 003584 502 DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP---DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG--PDH 576 (809)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 576 (809)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++..... .+... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577788888888888888888888877643222 2223333444555677788888877766652 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCcCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCCccHHhHhhh
Q 003584 577 YACMIDLLGRSGKLIEAKAL-LDQMVGEPDATVWKALLSACRVH------GDLELGERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~a~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+.+...|+++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000112333333334444 778889999999999999877777766655
Q ss_pred hh
Q 003584 650 YS 651 (809)
Q Consensus 650 ~~ 651 (809)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 43
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.39 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
+|..+...|...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888887774
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.29 E-value=26 Score=36.79 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-------CHhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCccCHhHHHHHHHH
Q 003584 377 LIDMYAKQGNLDCAFMVFNLMQDK-------DVISWTSLITGCAY---HGSYEEALKYFSDMRISGICPDHVVVSSILSA 446 (809)
Q Consensus 377 li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 446 (809)
|+-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.|+..+-..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344477788888888888877653 11122233445556 78899999998886666566777777655544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.8 Score=37.00 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=39.8
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC--C-CH---HHHHHHHHHHHhcCCh
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE--P-DA---TVWKALLSACRVHGDL 622 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p-~~---~~~~~ll~a~~~~g~~ 622 (809)
+..|+++.|++.|..... -.+.....|+.-..+|.-+|+.++|++=+++...- | .. ..|-.-...|+..|+.
T Consensus 54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344444444444444331 11123344444444444455555555444444320 1 00 1223333456666777
Q ss_pred hHHHHHHHHHhccCC
Q 003584 623 ELGERAANNLFELEP 637 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p 637 (809)
+.|..-|+.+-++..
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777666666655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.41 Score=30.96 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 609 WKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 609 ~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
|..|...|...|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.84 E-value=8.5 Score=36.33 Aligned_cols=180 Identities=19% Similarity=0.124 Sum_probs=93.9
Q ss_pred hcCCHHHHHHHHHhcC--CCC-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 003584 484 KCGCINDANRVFDSMH--TRD-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 484 k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~ 559 (809)
..|-..-|+--|.... .|+ +..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++--.|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHH
Confidence 3344444444444333 233 345666666667777777777777777663 3322 233222233444567776666
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 560 YFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 560 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
-+...-+.-.-+|-...|-- +-.+.-+..+|..-+.+--...|..-|+.-+-.+.-..-.+ +.+++++.+-..++
T Consensus 155 d~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHHHhcCCCChHHHHHHH---HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 55433322122222222222 22233455566543332222455566666555443322111 12233333222222
Q ss_pred -------CccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 640 -------AMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 640 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++|..|+.-|...|+.++|..+|+.....+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999877554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.77 E-value=5.5 Score=34.34 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 003584 304 WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGF 367 (809)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 367 (809)
.+..++.+.+.|+-+.-.+++.++.+ +-++++..+..+..+|.+.|+..++.+++..+-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455666667777666667666654 2355666666666777777777777777666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.67 E-value=0.6 Score=30.17 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.4
Q ss_pred cHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.97 Score=30.77 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHH
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALL 613 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll 613 (809)
.+..+...|.+.|++++|.++++++.. .| |...|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 455666777777777777777777664 24 344555543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.33 E-value=50 Score=38.87 Aligned_cols=141 Identities=12% Similarity=0.162 Sum_probs=75.2
Q ss_pred hhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 003584 184 IFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILS 263 (809)
Q Consensus 184 ~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 263 (809)
+++...++.+-+. |..|+.-|...|+.++|++++.+....--.-|. ...+.-..+.+.+.+
T Consensus 494 vee~e~~L~k~~~------y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-------------~~~~~~e~ii~YL~~ 554 (877)
T KOG2063|consen 494 VEEIETVLKKSKK------YRELIELYATKGMHEKALQLLRDLVDEDSDTDS-------------FQLDGLEKIIEYLKK 554 (877)
T ss_pred hHHHHHHHHhccc------HHHHHHHHHhccchHHHHHHHHHHhcccccccc-------------chhhhHHHHHHHHHH
Confidence 4444444444444 899999999999999999999998753100011 011112224444444
Q ss_pred hCCC--CchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHH
Q 003584 264 SGFE--ANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWN-SMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYP 340 (809)
Q Consensus 264 ~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 340 (809)
.+-+ +-...|.. +.-..+.+...++|-.-......+.+ .-+-.|......+-+...++.+....-.++..-.+
T Consensus 555 l~~~~~~Li~~y~~----wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht 630 (877)
T KOG2063|consen 555 LGAENLDLILEYAD----WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHT 630 (877)
T ss_pred hcccchhHHHHHhh----hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHH
Confidence 4422 11111111 11234455666666441110111111 12345666777778888888887766566666666
Q ss_pred HHHHHhh
Q 003584 341 SVLNCFA 347 (809)
Q Consensus 341 ~ll~~~~ 347 (809)
.++..|+
T Consensus 631 ~ll~ly~ 637 (877)
T KOG2063|consen 631 VLLKLYL 637 (877)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.28 E-value=14 Score=42.39 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=39.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhC-CCCChhHHhHHHHHHHh---c
Q 003584 410 TGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSG-GCSSLSVDNSLVLVYAK---C 485 (809)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~k---~ 485 (809)
..+.-.|+++.|++.+.+ ..+...|.+.+...|..+.-..-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567889999988876 3344667777777666554332222211 2221111 11112445667777775 3
Q ss_pred CCHHHHHHHHHhcC
Q 003584 486 GCINDANRVFDSMH 499 (809)
Q Consensus 486 g~~~~A~~~~~~~~ 499 (809)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 56777777776655
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.30 E-value=15 Score=33.19 Aligned_cols=90 Identities=20% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHHhcCCh
Q 003584 545 LFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACRVHGDL 622 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~ 622 (809)
++.-...++.+++..+++.+. -+.|... .-..-+-.+.+.|++.+|..+|+++... |....-.+|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334456678888888887775 4556542 2223345677899999999999998754 5555566777666655544
Q ss_pred hHHHHHHHHHhccCC
Q 003584 623 ELGERAANNLFELEP 637 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p 637 (809)
..=....+++++..|
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 444455666666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.01 E-value=2.9 Score=41.80 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=57.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLA-----RGTKPDYITFVGL 544 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~l 544 (809)
.++..++..+..+|+.+.+.+.+++... -|...|..++.+|.+.|+...|+..|+++.. .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3456778888999999999998888763 3667899999999999999999999988775 4666665554443
Q ss_pred HH
Q 003584 545 LF 546 (809)
Q Consensus 545 l~ 546 (809)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=83 Score=38.22 Aligned_cols=255 Identities=10% Similarity=-0.072 Sum_probs=121.7
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCC
Q 003584 392 MVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSS 471 (809)
Q Consensus 392 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 471 (809)
.+...+.++|+..-..-+..+.+.+..+ +...+.++.. .+|...-...+.++...+........+..+++ .++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 4444455666666666666666665433 4444444442 23333333444444333221111122222222 245
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003584 472 LSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHA 551 (809)
Q Consensus 472 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 551 (809)
..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543311 12234444556666555555566655544322 12222 245555555555566655
Q ss_pred CCHHH-HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003584 552 GLAEN-ARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAAN 630 (809)
Q Consensus 552 g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~ 630 (809)
+..+. +...+..+.+ .++...-...+..+++.|..+.+...+..+...+|..+-..-+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2333333332 356666667777777777765554445555556666666666666666654 34445444
Q ss_pred HHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 631 NLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 631 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+++ +| +...-...+.++.+.+.-.++...+....+
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4443 22 233444444555443223345555544443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.40 E-value=25 Score=32.85 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHH-----HHHHHhhcCCHHHH
Q 003584 521 EALQFYDQMLARGTKPDYITFV--GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYAC-----MIDLLGRSGKLIEA 593 (809)
Q Consensus 521 ~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~eA 593 (809)
+.....+++....-+....++. .+...+...|++++|...++..... |..+.+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665542122222222 2344577788888888887755422 33333333 45567788999999
Q ss_pred HHHHHhCcCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 594 KALLDQMVGEP-DATVWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 594 ~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
+..++....+. ....-..-..++...|+.++|...|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99987765321 1222333456788889999999999998888754
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.39 E-value=68 Score=36.85 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=29.5
Q ss_pred cccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 003584 200 HVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAV 248 (809)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 248 (809)
...| ++|--+.|.|++++|.++..+... +.......|...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 3345 456667788888888888755543 3455566777777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.99 E-value=2.6 Score=42.02 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
++..++.++...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666667777777777777777777777777777777777777777777777777765
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.81 E-value=34 Score=35.16 Aligned_cols=52 Identities=19% Similarity=0.060 Sum_probs=26.7
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhCC-----CCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 443 ILSACAELTVLEFGQQVHAVFLKSGG-----CSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 443 ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
+-.+....+.++++.+.++.+.+... .....++-+|...|++..++++|.-.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhh
Confidence 33455555556666665555544211 11234555666666666666655443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.45 E-value=2.5 Score=38.11 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=40.9
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 614 SACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+.-..+++.+.++.++..+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 333456677777777777777777777777777777777777777777777766553
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.42 E-value=58 Score=35.15 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCCCHHHHH-HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH---HhhcCCHHHHHHHHHhCcC--CCCHH
Q 003584 534 TKPDYITFV-GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDL---LGRSGKLIEAKALLDQMVG--EPDAT 607 (809)
Q Consensus 534 ~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~---~~~~g~~~eA~~~~~~m~~--~p~~~ 607 (809)
..|+..|+. .++.-+-..|-..+|...+..+.. --+|+...|..||.. ...+| +..+.++++.|.. -.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 577887765 577777888889999999988864 344566778777754 33444 7778888888774 26788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFE-LEPMN 639 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~-~~p~~ 639 (809)
.|...+.--..+|..+.+-.++.++.+ ++|..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888888888888888888877765 55543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.2 Score=44.58 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=77.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcC
Q 003584 544 LLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHG 620 (809)
Q Consensus 544 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g 620 (809)
-.+-|.+.|.+++|+..|.... .+.| +...|..-..+|.+..++..|..=-+.... +.-.-.|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3566889999999999997655 5566 777888888899999998877765555442 112235666666666778
Q ss_pred ChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 621 DLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
+..+|.+-++..++++|++.. |-..|.......|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 999999999999999998654 333344444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.26 E-value=55 Score=34.73 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 003584 486 GCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARG-TKPDYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
|+++.-.+++-+-..+=...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.=
T Consensus 380 ~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelG 458 (660)
T COG5107 380 NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELG 458 (660)
T ss_pred CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHH
Confidence 334333333333233445678888888888888899999999999999 5677778888887655 57888899999765
Q ss_pred HHhhCCCCChHHH-HHHHHHHhhcCCHHHHHHHHHhCcCC--CC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 565 DKVYGIKPGPDHY-ACMIDLLGRSGKLIEAKALLDQMVGE--PD--ATVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 565 ~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~~~~~m~~~--p~--~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
... -||...| .-.++-+.+-++-+.|..+|+....+ .+ ..+|..++.--..-|+...+..+-+++.++-|..
T Consensus 459 l~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 459 LLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 543 2444444 35667788999999999999966542 33 4589999999999999999999989999988875
Q ss_pred C
Q 003584 640 A 640 (809)
Q Consensus 640 ~ 640 (809)
.
T Consensus 536 n 536 (660)
T COG5107 536 N 536 (660)
T ss_pred h
Confidence 3
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=79 Score=36.46 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhccc
Q 003584 376 ALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELT 451 (809)
Q Consensus 376 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 451 (809)
..+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..|- ..+..-..++..+.+.|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 3444455667777766633222 23444455566667777777777666666655442 22334444454444333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.75 E-value=11 Score=38.47 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCC-------CCeeechHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC-
Q 003584 488 INDANRVFDSMHT-------RDVITWTALIMGCAQNGK----GKEALQFYDQMLARGTKPDYI--TFVGLLFACSHAGL- 553 (809)
Q Consensus 488 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~- 553 (809)
...|.++|+.|.+ ++-..+..|+.. ..++ .+++..+|+.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3455666666652 233444444433 2222 356778888888888776543 33344433332222
Q ss_pred -HHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 003584 554 -AENARWYFESMDKVYGIKPGPDHYACMID 582 (809)
Q Consensus 554 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 582 (809)
+.++.++++.+.+. ++++...+|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45778888888776 99988888876643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.31 E-value=42 Score=32.58 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=85.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHH---HHHHHHHHH
Q 003584 474 VDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGT--KPDYI---TFVGLLFAC 548 (809)
Q Consensus 474 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~---t~~~ll~a~ 548 (809)
.++--..+|..+|.++.|-..+++..+ ...+-++++|+++|++...-=. ..+.. -+..+-..+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 345556778888888877776665421 2345567888888877654200 11111 233344456
Q ss_pred HccCCHHHHHHHHHHhHH---hhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC------CCCHHHHHHHHHHHHh
Q 003584 549 SHAGLAENARWYFESMDK---VYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG------EPDATVWKALLSACRV 618 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~---~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~a~~~ 618 (809)
.+...+++|-..+..-.. ...--|+. ..|...|-.|.-..++..|...++.... ..|..+...|+.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 667777777665543211 01111222 3455566667778899999999988332 235558888888874
Q ss_pred cCChhHHHHHHH
Q 003584 619 HGDLELGERAAN 630 (809)
Q Consensus 619 ~g~~~~A~~~~~ 630 (809)
.|+.++...++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 567777666553
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.30 E-value=8.4 Score=31.34 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003584 482 YAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV 542 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 542 (809)
+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456788999999998888899998887754 36677777777777777776 55555554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.24 E-value=4.5 Score=35.81 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=46.6
Q ss_pred hcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 618 VHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
..++.++++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 478888899999888889999988888889999999999999999988876653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.93 E-value=35 Score=31.33 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhC-CChHHHHHHHhccCC
Q 003584 221 ECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYV-QSALIDMYAKC-GDLDSARRLLEYSEI 298 (809)
Q Consensus 221 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~-g~~~~A~~~f~~~~~ 298 (809)
+..+.+.+.|++|+...+..+++.+.+.|.+..-. ++++.++-+|... .-.|++.-.+. .-..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 44555556677777777777777777777655433 3344444444333 22222221111 01223334444333
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH
Q 003584 299 DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364 (809)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 364 (809)
..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...--.++....+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2456677778888888888888776522 2333345566666666665555555555444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.84 E-value=3.1 Score=41.83 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=60.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 003584 510 IMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSG 588 (809)
Q Consensus 510 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 588 (809)
.+-|.++|.+++|+..|.+... +.| |.+++..-..||.+...+..|..-....... -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 3569999999999999998877 567 8999999999999999988887766554421 123456666654
Q ss_pred -------CHHHHHHHHHhCcC-CCCH
Q 003584 589 -------KLIEAKALLDQMVG-EPDA 606 (809)
Q Consensus 589 -------~~~eA~~~~~~m~~-~p~~ 606 (809)
+++||.+=.+.... +|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 45555554444432 4553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.73 E-value=12 Score=34.87 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=48.1
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhhCC--CCC----hHHH
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI--TFVGLLFACSHAGLAENARWYFESMDKVYGI--KPG----PDHY 577 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~~~ 577 (809)
+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+.........- +++ ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3445555666666666666666665544444432 3445555566666666666555544332111 111 1223
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCc
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
..|. +...|++.+|-+.|-...
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccC
Confidence 3332 234567777777776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.11 E-value=26 Score=35.80 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCccCH--hHHHHHHHHHhcccc--hhHHHHHHHHHHHhCCCCChhHHhHH
Q 003584 419 EEALKYFSDMRISGICPDH--VVVSSILSACAELTV--LEFGQQVHAVFLKSGGCSSLSVDNSL 478 (809)
Q Consensus 419 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 478 (809)
+++..+|+.+.+.|+..+. ...+.+|..+..... ...+..++..+.+.|++.....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4566677777776665532 233333333322222 33555666666666666655555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.05 E-value=57 Score=33.13 Aligned_cols=19 Identities=0% Similarity=-0.274 Sum_probs=12.4
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 003584 614 SACRVHGDLELGERAANNL 632 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~ 632 (809)
..+.+.++++.|...|+-.
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 4456667777777777643
|
It is also involved in sporulation []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.98 E-value=48 Score=32.52 Aligned_cols=231 Identities=19% Similarity=0.248 Sum_probs=129.2
Q ss_pred cCCHHHHHHHHhhcCC----C---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCC--ccCHhHHHHHHHHHhccc
Q 003584 384 QGNLDCAFMVFNLMQD----K---DVISWTSLITGCAYHGSYEEALKYFSDMRI---SGI--CPDHVVVSSILSACAELT 451 (809)
Q Consensus 384 ~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~~ 451 (809)
...+++|+.-|+.+.+ + .--+.-.+|..+.+.|++++.++.+.+|.. ..+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777776643 1 223445678888888888888888888753 111 123556677777666555
Q ss_pred chhHHHHHHHHHHHh-----CCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--------CCe-------eechHHHH
Q 003584 452 VLEFGQQVHAVFLKS-----GGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--------RDV-------ITWTALIM 511 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~~-------~~~~~li~ 511 (809)
+.+.-...++.-++. +-..-..+-+.|...|...|.+..-.+++.++.. .|. ..|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555433221 1122233345567777777887777777776641 111 24555566
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----HccCCHHHHHHHHHHhHHhhCCC--CCh---HHHHHH
Q 003584 512 GCAQNGKGKEALQFYDQMLARG-TKPDYITFVGLLFAC-----SHAGLAENARWYFESMDKVYGIK--PGP---DHYACM 580 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~~~~~~--p~~---~~~~~l 580 (809)
.|....+-..-..++++.+.-. --|.+. ...++.-| .+.|.+++|..-|-+.-+.|.-. |.. --|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 6777777777777787766422 123332 33445544 35677887765443333333222 221 235566
Q ss_pred HHHHhhcCC----HHHHHHHHHhCcCCCCHHHHHHHHHHHHhc
Q 003584 581 IDLLGRSGK----LIEAKALLDQMVGEPDATVWKALLSACRVH 619 (809)
Q Consensus 581 i~~~~~~g~----~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 619 (809)
.+++.+.|- -+||.-+ ...|.......|+.+|..+
T Consensus 279 ANMLmkS~iNPFDsQEAKPy----KNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKPY----KNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccCCC----CCCHHHHHHHHHHHHHhcc
Confidence 677777662 1121110 0135556777888888654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.68 E-value=36 Score=32.81 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=11.1
Q ss_pred HHhcCCHHHHHHHHHhc
Q 003584 482 YAKCGCINDANRVFDSM 498 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~ 498 (809)
++-.+++++|.++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 44455777777777655
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.63 E-value=3.7 Score=29.28 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 611 ALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 611 ~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35668899999999999999999999987643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.52 E-value=97 Score=35.46 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=21.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCCe
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRDV 503 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~~ 503 (809)
..|+..|...+++..|..++-...++++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccChHH
Confidence 4478888888888888888877776654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.50 E-value=19 Score=32.85 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=23.7
Q ss_pred CCChHHHHHHHhccCCCCeeeHHHHH-----HHHHhcCChhHHHHHHHHHHHCC
Q 003584 283 CGDLDSARRLLEYSEIDNEVSWNSMI-----VGFARQGFHKEALSLFKKMHARD 331 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 331 (809)
.+..++|..-|..+...+--+|-.|. ....+.|+..+|...|++.-...
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 34445555555544444444443332 23345566666666666655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.44 E-value=8.2 Score=36.03 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcc--cHHHHHHHhhcCCCchHHHHHHHHH
Q 003584 100 TWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQY--TLDNVLRLCSLKGLLQRGEQFHGYA 159 (809)
Q Consensus 100 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~ 159 (809)
.|..+..-|++.|+.++|++.|.++++....|... .+..+|+.+...+++..+......+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45555566666666666666666666544333322 2444555555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.35 E-value=40 Score=30.92 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhc
Q 003584 257 VHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEY 295 (809)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 295 (809)
....+.+.+++|+...+..+++.+.+.|++.....++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 344455667777777777777777777776665555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.22 E-value=1.9 Score=27.16 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.4
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLA 531 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 531 (809)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466677777777788888887777776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.89 E-value=1.8e+02 Score=38.13 Aligned_cols=307 Identities=14% Similarity=0.074 Sum_probs=156.1
Q ss_pred HhhcCCChHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCCHhHHHHHHHHHHhcCCHHHH
Q 003584 345 CFASNIDLNNAKSVHSLIVKTGF--EGYKFVNNALIDMYAKQGNLDCAFMVFNL-MQDKDVISWTSLITGCAYHGSYEEA 421 (809)
Q Consensus 345 ~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A 421 (809)
+--+.+.+.+|...++.-..... ......+-.+...|+..+++|....+... ..++++ ..-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHH
Confidence 44445555555555554200000 11122334444467777777766666552 333332 2234445667888888
Q ss_pred HHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhH-HHHHHHhcCCHHHHHHHHHhcC
Q 003584 422 LKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNS-LVLVYAKCGCINDANRVFDSMH 499 (809)
Q Consensus 422 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~k~g~~~~A~~~~~~~~ 499 (809)
...|+.+.+.+ |+ ..+++.++..-...+.++......+...... .+...-+++ =+.+--+.++++.......
T Consensus 1469 ~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 88888887653 44 5566666666555566555554333322221 222222222 2344456677776666555
Q ss_pred CCCeeechHH-H-HHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----------HhH
Q 003584 500 TRDVITWTAL-I-MGCAQNG--KGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFE----------SMD 565 (809)
Q Consensus 500 ~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~----------~m~ 565 (809)
..+..+|.+. + ..+.+.. +.-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.- ...
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677665 2 2222221 1111112333333221111 223333333222222211 111
Q ss_pred HhhCCCCCh------HHHHHHHHHHhhcCCHHHHHHHHHhCc----CC-----CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003584 566 KVYGIKPGP------DHYACMIDLLGRSGKLIEAKALLDQMV----GE-----PDATVWKALLSACRVHGDLELGERAAN 630 (809)
Q Consensus 566 ~~~~~~p~~------~~~~~li~~~~~~g~~~eA~~~~~~m~----~~-----p~~~~~~~ll~a~~~~g~~~~A~~~~~ 630 (809)
...+..++. ..|..-...-....+..|-.--+++.. .+ .-..+|-.....++..|.++.|-.+.-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 112333322 122211111111112222222222111 12 234589999999999999999998888
Q ss_pred HHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 631 NLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 631 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
++.+..+ +..+.-.+......|+-..|..+++.-.+..
T Consensus 1695 ~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1695 NAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8777764 6788999999999999999999999887653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.19 E-value=86 Score=33.97 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHH
Q 003584 403 ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVY 482 (809)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 482 (809)
...-+++..+.++..+.-...+..+|..-| -+...|..++..|... ..+.--.++..+.+..+ .|+....-|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 344566777777777777777777877654 4566677777777666 45556666776666654 3455556677777
Q ss_pred HhcCCHHHHHHHHHhcC
Q 003584 483 AKCGCINDANRVFDSMH 499 (809)
Q Consensus 483 ~k~g~~~~A~~~~~~~~ 499 (809)
.+ ++.+.+...|.++.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 76 77777777777654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.14 E-value=1.1e+02 Score=35.21 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=27.8
Q ss_pred hcCChhHHHHHHHHHhccC---CCCCc-cH-----HhHhhhhhhcCChhHHHHHHHHHH
Q 003584 618 VHGDLELGERAANNLFELE---PMNAM-PY-----VQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
-.|+..+..........+- |+... .+ ..+.+.|...|+.++|.....+..
T Consensus 546 f~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 546 FEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3677666555544444322 32222 22 244555777888888887776653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.61 E-value=18 Score=39.61 Aligned_cols=148 Identities=16% Similarity=0.020 Sum_probs=97.3
Q ss_pred hcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 003584 484 KCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 484 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
-.|+++.|..++..++++ .-+.++.-+...|..++|+++ .||.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 357777777777666632 234556666777777777764 34433 2322 246788888888765
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 563 SMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
+.. +..-|..|.++...+|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+....|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 432 44568889999999999999999887754 36677777777787765545544444443333
Q ss_pred HHhHhhhhhhcCChhHHHHHHHH
Q 003584 643 YVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.--.+|...|+++++.+++.+
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 233467788999999887754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.55 E-value=46 Score=30.45 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHH--HHHHhhcC
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACM--IDLLGRSG 588 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 588 (809)
+++.+..++|+.-|..+.+.|...=.+ ..........+.|+...|...|+++-.. .-.|... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456677788888888887766443222 2223334456667777777777766544 2222221 11111 11234455
Q ss_pred CHHHHHHHHHhCcCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHH
Q 003584 589 KLIEAKALLDQMVGEPDA---TVWKALLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 589 ~~~eA~~~~~~m~~~p~~---~~~~~ll~a~~~~g~~~~A~~~~~~~ 632 (809)
.+++.....+-+..+.++ ..-.+|.-+-.+.|++..|...|+++
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 555555444444332221 12333444444444444444444444
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.38 E-value=3 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.|..+...+...|+.+.|...+++.+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666677777766666666653
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.33 E-value=2e+02 Score=37.71 Aligned_cols=365 Identities=13% Similarity=0.054 Sum_probs=173.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChHHHHHHHhc-cCCCCeeeHHHHHHHHHhcCChhHH
Q 003584 244 ACAAVSARDFGAQVHGCILSSGF--EANVYVQSALIDMYAKCGDLDSARRLLEY-SEIDNEVSWNSMIVGFARQGFHKEA 320 (809)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A 320 (809)
+--+.+.+..|...++.-..... ......+-.|...|+.-+++|....+... ...+ +...-|--....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHH
Confidence 33445555566655555200000 11223344455578888887776666552 2222 233445556677999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHH-HHHHHHHHhcCCHHHHHHHHhhcCC
Q 003584 321 LSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVN-NALIDMYAKQGNLDCAFMVFNLMQD 399 (809)
Q Consensus 321 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~ 399 (809)
...|+.+.+.+ ++...+++.++......+.++...-..+.....- .+...-+ +.=+.+--+.+++|....... .
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 99999998764 2236778888888777777776665443333221 2222222 223344456677776666555 4
Q ss_pred CCHhHHHHH-H-HHHHhcCC--HHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHH
Q 003584 400 KDVISWTSL-I-TGCAYHGS--YEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVD 475 (809)
Q Consensus 400 ~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 475 (809)
.+..+|.+. + ..+.+... .-.-.++.+.+++.-+. =+.+|+..+.+. ..|
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~------------------~~Y 1597 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYV------------------RSY 1597 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHH------------------HHH
Confidence 555566554 2 22222111 11111222222221111 122222222111 122
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCC-----eeechHHHHHHHhcCChHHHHHHHHHHH-HC----CCCCC-HHHHHHH
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRD-----VITWTALIMGCAQNGKGKEALQFYDQML-AR----GTKPD-YITFVGL 544 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~----g~~pd-~~t~~~l 544 (809)
..++....-+. .+.-.+.+......+ ..-|..-+.-=....+..+-+--+++.. .. +.+-. ..+|...
T Consensus 1598 ~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1598 EILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 22222222221 122222222222111 1123222221111111222222222211 11 12222 2367777
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCC--------HHHHHHHHH
Q 003584 545 LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPD--------ATVWKALLS 614 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~--------~~~~~~ll~ 614 (809)
...+...|.++.|....-...+. + .| ..+--.+..+-..|+-..|+.++++... .|+ +..-|.++.
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 77788888888888776555432 2 23 3344556777788888888888876552 122 222232222
Q ss_pred H--------H-HhcCC--hhHHHHHHHHHhccCCCCCccHHhHh
Q 003584 615 A--------C-RVHGD--LELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 615 a--------~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
. | ...|+ .+.-++.|.++.+..|.....|+.|+
T Consensus 1753 ~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2 1 12233 34455677888888886555555555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 7e-10
Identities = 33/305 (10%), Positives = 87/305 (28%), Gaps = 11/305 (3%)
Query: 317 HKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNA 376
+ A L + +L + L+ ++ + G + A
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 377 LIDMYAKQGNLDCAFMVFNLMQDK-------DVISWTSLITGCAYHGSYEEALKYFSDMR 429
L A + + + + + +++ G A G+++E + ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 430 ISGICPDHVVVSSILSACAELT-VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCI 488
+G+ PD + ++ L ++ + G L+ + +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 489 NDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFAC 548
++V + + ++ K+ Y ++ + L
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL 312
Query: 549 SHAGLAEN-ARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDAT 607
+ + + S + + K L R L E K L++ V E +
Sbjct: 313 ASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCR--ALRETKNRLEREVYEGRFS 370
Query: 608 VWKAL 612
++ L
Sbjct: 371 LYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 3e-09
Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 8/182 (4%)
Query: 226 MRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGD 285
R + +L + D G + A
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 286 LDSARRLLEY-------SEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFT 338
L A LL ++ +N++++G+ARQG KE + + + + D +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 339 YPSVLNCFA-SNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLM 397
Y + L C + D + + + G + L+ + L V
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 398 QD 399
Sbjct: 263 SL 264
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 5e-04
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 12/141 (8%)
Query: 7 KILNFSLRCRSKIIGPARYTHNVGNSVKPASDLNRALVDFS---NSGEIDEAGQLFEKMS 63
+ L R SK + P + L+ + S ++++A +
Sbjct: 62 RRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQA 121
Query: 64 DRDGF--TWNTMIAAYANSGRLREAKKLFN-------ETPFKNFFTWSSLIYGYSNYGLD 114
G + +L A L + +++++ G++ G
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 115 IEAFELFWQMQLEGYRPSQYT 135
E + + ++ G P +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLS 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 4e-09
Identities = 65/494 (13%), Positives = 135/494 (27%), Gaps = 144/494 (29%)
Query: 240 SILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLE----- 294
+ + A + Q + ++ + + +S +LE
Sbjct: 164 TWV---ALDVCLSYKVQCK-------MDFKIF--------WLNLKNCNSPETVLEMLQKL 205
Query: 295 YSEIDNEVSWNSMIVGFARQGFH--KEALS--LFKKMHARDIKI-DDFTYPSVLNCF--- 346
+ID + S + H + L L K + + + + N F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 347 ---------ASNID-LNNAKSVHSLIVKT--GFEGY-------KFVNNALIDM--YAKQG 385
D L+ A + H + K+++ D+
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 386 N-LDCAFMVFNLMQDKDVISW-----------TSLITGCAYHGSYEEALKYFSDMRISGI 433
N + ++ ++D + +W T++I E K F + +
Sbjct: 326 NPRRLS-IIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SV 380
Query: 434 CPDHVVVS----SIL-SACAELTVLEFGQQVHAVFL-KSGGCSSLSVDNSLVLVYAKCGC 487
P + S++ + V+ ++H L + S S+ L K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKL 439
Query: 488 INDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLF 546
N+ ++H R ++ + + L DQ Y + +G
Sbjct: 440 ENEY-----ALH-RSIVDHYNIPKTFDSDDLIPPYL---DQ---------YFYSHIG--- 478
Query: 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDA 606
H E+ V+ +D + +E K D+
Sbjct: 479 --HHLKNIEHPE-RMTLFRMVF------------LDF-----RFLEQKI-------RHDS 511
Query: 607 TVWKALLSACRVHGDLEL-----------GERAANNLFELEPMNAM-----PY---VQLS 647
T W A S L+ ER N + + P Y ++++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 648 NMYSTAGKWEDAAR 661
M +E+A +
Sbjct: 572 LMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 45/269 (16%), Positives = 84/269 (31%), Gaps = 68/269 (25%)
Query: 5 DFKILN-FSLRCRSKIIGPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEK-- 61
+ K N F+L C KI+ R+ V + + A+ + +L S + DE L K
Sbjct: 255 NAKAWNAFNLSC--KILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 62 ---MSD--------------------RDGF-TWNTMIAAYANSGRLREAKKLF--NETP- 94
D RDG TW+ + N +L + P
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPA 369
Query: 95 -----FKNFFTWSSLIYGYSNYGLDIEA--FELFWQMQLEGYRPSQYTLDNVLRLCSLKG 147
F ++ I L W + + + V+
Sbjct: 370 EYRKMFDRLS-----VF---PPSAHIPTILLSLIW------FDVIKSDVMVVVNKLHKYS 415
Query: 148 LLQRGEQFHGYAIKTC-FDLNAFVVT------GLVDMYAKCKCIFEAEYLFKMFPDG--K 198
L+++ + +I + +L + +VD Y K F+++ L + D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT-FDSDDLIPPYLDQYFY 474
Query: 199 NHVAWTTMITGYSQNGYGFKAIECFRDMR 227
+H+ + + F+ + F D R
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV--FLDFR 501
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 18/163 (11%), Positives = 35/163 (21%), Gaps = 9/163 (5%)
Query: 502 DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWY 560
V+ + G + L Q A G P + +
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQ--AHGLTPAQVVAIASHDGGKQALETMQRLL-- 246
Query: 561 FESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACR 617
+ + +G+ P A I + +L Q G PD + +
Sbjct: 247 -PVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305
Query: 618 VHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660
++ L P + +
Sbjct: 306 ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 348
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 16/162 (9%), Positives = 34/162 (20%), Gaps = 9/162 (5%)
Query: 502 DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWY 560
V+ + G + L Q A G P + +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRL--- 125
Query: 561 FESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACR 617
+ + +G+ P A + +L Q G P+ + +
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185
Query: 618 VHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDA 659
++ L P + +
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 34/269 (12%), Positives = 66/269 (24%), Gaps = 18/269 (6%)
Query: 400 KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQV 459
+ V++ S G + + L + G+ P VV +I S LE Q++
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVV--AIASHDGGKQALETVQRL 125
Query: 460 HAVFLKSGGCSSLSVD--NSLVLVYAKCGCINDANRVFD---SMHTRDVITWTALIMGCA 514
V ++ G + V S + V + V+ + G
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185
Query: 515 QNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPG 573
+ L Q A G P + + + + +G+ P
Sbjct: 186 ALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALETVQRL---LPVLCQAHGLTPQ 240
Query: 574 -PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAAN 630
A + +L Q G P + + ++
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300
Query: 631 NLFELEPMNAMPYVQLSNMYSTAGKWEDA 659
L P + +
Sbjct: 301 QAHGLTPQQVVAIASNGGGKQALETVQRL 329
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 7e-05
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 10/172 (5%)
Query: 501 RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL-FACSHAGLAENARW 559
+ L + G +EA++ Y + L P++ L G + A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 560 YFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSAC 616
+++ + I P D Y+ M + L + A + + P A L S
Sbjct: 65 HYK---EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 617 RVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWE-DAARVRKLMK 667
+ G++ + +L+P Y L++ W R++KL+
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 515 QNGKGKEALQFYDQMLARGTKPDYITFVGLL-FACSHAGLAENARWYFESMDKVYGIKPG 573
Q G + A + Q+ + +PD + LL + + P
Sbjct: 11 QAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRS---AHFSTLAIKQNPL 65
Query: 574 -PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAAN 630
+ Y+ + ++ G+L EA + +PD + L +A GD+E +A
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 631 NLFELEPMNAMPYVQLSNMYSTAGKWEDA 659
+ + P L N+ G+ E+A
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEA 154
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)
Query: 513 CAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIK 571
C + + E++ ++D+ LA T P I + + G A Y + + +
Sbjct: 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK---RSLAAQ 143
Query: 572 PG-PDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAAN 630
P P + + +G+L +A + + LL ++ L + A
Sbjct: 144 PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203
Query: 631 NLFELEPMNA 640
+L+
Sbjct: 204 YEAQLQANFP 213
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 15/214 (7%)
Query: 457 QQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR---DVITWTALIMGC 513
QQ + S V +Y V D + ++
Sbjct: 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYL 75
Query: 514 AQNGKGKEALQFYDQMLARGTKPDYITFVGLLFAC-SHAGLAENARWYFESMDKVYGIKP 572
A + + + D+ ++R TF+ + + + + A D
Sbjct: 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS------ 129
Query: 573 GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLELGE--RA 628
+ A + +L + +L A+ L +M + DAT A G +L +
Sbjct: 130 -LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188
Query: 629 ANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARV 662
+ + + + + G+WE A V
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 809 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 8e-07
Identities = 50/384 (13%), Positives = 104/384 (27%), Gaps = 14/384 (3%)
Query: 276 LIDMYAKCGDLDSARRLLEYS---EIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDI 332
L + GD ++A R E DN + + + ++
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 333 KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFM 392
+ + Y ++ N + L A + ++ + N + A
Sbjct: 65 LLAE-AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 393 VFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTV 452
+ +Q + G ++ P+ V S L
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 453 LEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFD---SMHTRDVITWTAL 509
+ H + + L +L V + + A + S+ + L
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 510 IMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVY 568
+ G A+ Y + + +P + + L A G A + + +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTA--LR 299
Query: 569 GIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGE 626
D + ++ G + EA L + + P+ A L S + G L+
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 627 RAANNLFELEPMNAMPYVQLSNMY 650
+ P A Y + N
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTL 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 809 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.31 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.12 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.0 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.97 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.8 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.35 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.93 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.66 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.25 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 95.95 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.75 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.78 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.6e-22 Score=160.14 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q ss_conf 80487499887994099999999997249---99900023999999964994999999999998899988-878999999
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLF 546 (809)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 546 (809)
+...+..+...+...|++++|...++... ..+...+..+...+...|++++|+..|++..+. .|+ ..++..+..
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 279 (388)
T d1w3ba_ 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_conf 49999997155220052999999999857775547999999999999878999999999999984--9998999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHCCCHHH
Q ss_conf 99803979999999999678509998869999999998421998999999986769-99-98789999999996199549
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~ 624 (809)
.+...|++++|...++.... ..+.+...+..+...+...|++++|.+.+++... .| +..+|..++.++...|++++
T Consensus 280 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 357 (388)
T d1w3ba_ 280 ALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99974879999999986540--4873001015799999987899999999999998688989999999999998599999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9999988753699997107869615321599
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
|...++++++++|+++..|..|+.+|.+.|+
T Consensus 358 A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.4e-21 Score=154.74 Aligned_cols=197 Identities=18% Similarity=0.111 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 880487499887994099999999997249---99900023999999964994999999999998899988878999999
Q 003584 470 SSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLF 546 (809)
Q Consensus 470 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (809)
.....+..+...+...|+.+.|...+++.. +.+...|..+...+...|++++|+..+++..... +.+...+..+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 1068998636301024719999999999998494649999997155220052999999999857775-547999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99803979999999999678509998869999999998421998999999986769--9998789999999996199549
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~ 624 (809)
.+...|++++|...|+...+. .+.+...+..++.++...|+.++|.+.++.... +.+...+..+...+...|+++.
T Consensus 246 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 999878999999999999984--999899999999999974879999999986540487300101579999998789999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999998875369999710786961532159926999999999858
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
|+..+++++++.|+++..+..++.+|...|++++|...+++..+.
T Consensus 324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999868898999999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.9e-14 Score=107.05 Aligned_cols=119 Identities=16% Similarity=0.082 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 3979999999999678509998869999999998421998999999986769-9-9987899999999961995499999
Q 003584 551 AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-E-PDATVWKALLSACRVHGDLELGERA 628 (809)
Q Consensus 551 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~~~~A~~~ 628 (809)
.+...++...+........-.++...+..++..+...|++++|...+++... . .+...|..++..+...|+++.|...
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHH
T ss_conf 65799999999999997130122211103688888888775500211122222222211101333012211110137888
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 98875369999710786961532159926999999999858
Q 003584 629 ANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 629 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 77899884324999999999999878999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.5e-13 Score=99.47 Aligned_cols=133 Identities=14% Similarity=-0.002 Sum_probs=92.1
Q ss_pred HHCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 96499499999999999889-99888789999999980397999999999967850999886999999999842199899
Q 003584 514 AQNGKGKEALQFYDQMLARG-TKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~e 592 (809)
...+...+|...|.+..... -.++...+..+...+...|++++|...++..... .+-+...+..++..+.+.|++++
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~ 224 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 224 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHCCCCCCCCHH
T ss_conf 8765799999999999997130122211103688888888775500211122222--22221110133301221111013
Q ss_pred HHHHHHHCCC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 9999986769-99-98789999999996199549999998875369999710786961
Q 003584 593 AKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 593 A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
|.+.++++.. .| +..+|..++.++...|++++|+..+++++++.|++...+..++.
T Consensus 225 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 282 (323)
T d1fcha_ 225 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 282 (323)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7888778998843249999999999998789999999999999709757001124599
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=8.2e-09 Score=71.84 Aligned_cols=160 Identities=17% Similarity=0.083 Sum_probs=83.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHH
Q ss_conf 999999649949999999999988999----88878999999998039799999999996785099988-----699999
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTK----PDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-----PDHYAC 579 (809)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ 579 (809)
+...+...|+++.+...+.+....... ....++......+...+...++...+............ ...+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 87899981456666899999888766300246899998888888764667888899999999998731157269999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCC-C-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHC------CCCCCCCCHHHHH
Q ss_conf 999984219989999999867699-9-----987899999999961995499999988753------6999971078696
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVGE-P-----DATVWKALLSACRVHGDLELGERAANNLFE------LEPMNAMPYVQLS 647 (809)
Q Consensus 580 l~~~~~~~g~~~eA~~~~~~~~~~-p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~ 647 (809)
+...+...|+.++|...+++.... + ....+..+..++...|+.+.|...+++++. ..|.....+..++
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999860448989999999997622466677788999999998758799999999999988764266747999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 153215992699999999985
Q 003584 648 NMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+|...|++++|.+.+++..+
T Consensus 299 ~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
T ss_conf 999987899999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.6e-08 Score=69.96 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 8999999999619954999999887536
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (809)
.+..+...+...|+.+.|...+++++++
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999878999999999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=8.1e-10 Score=78.51 Aligned_cols=146 Identities=13% Similarity=0.194 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999997249---99900023999999964994999999999998899988878999999998039799999999996
Q 003584 488 INDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 488 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
+++|...++... +.+..+|+.+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~a 172 (315)
T d2h6fa1 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL 172 (315)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998877422689887588885053788998875554321-004688998877888888667899999999
Q ss_pred HHHHCCCC-CHHHHHHHHHHHHHCCC------HHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 78509998-86999999999842199------8999999986769-99-9878999999999619954999999887536
Q 003584 565 DKVYGIKP-GPDHYACMIDLLGRSGK------LIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 565 ~~~~~~~p-~~~~~~~l~~~~~~~g~------~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (809)
.+. .| +...|..+..++.+.+. +++|.+.+.++.. .| +...|..+...+.. ...+.+...++.+.++
T Consensus 173 l~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 173 LKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred HHH---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_conf 987---974499998899999874563102354776799999998498856999998779886-2718899999999972
Q ss_pred CCC
Q ss_conf 999
Q 003584 636 EPM 638 (809)
Q Consensus 636 ~p~ 638 (809)
.|.
T Consensus 249 ~~~ 251 (315)
T d2h6fa1 249 QPS 251 (315)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 877
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=5e-08 Score=66.65 Aligned_cols=185 Identities=10% Similarity=0.060 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-C-EEECHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 048999999999919998804874998879940999999999972499--9-9-00023999999964994999999999
Q 003584 453 LEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--R-D-VITWTALIMGCAQNGKGKEALQFYDQ 528 (809)
Q Consensus 453 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~ 528 (809)
.+.+..++..+++...+.+..++...+..+.+.|+++.|..+|+.+.. | + ...|...+....+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 59999999999987499879999999999986133899999999999871578699999999999982786889999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC----
Q ss_conf 9988999888789999999-98039799999999996785099988699999999984219989999999867699----
Q 003584 529 MLARGTKPDYITFVGLLFA-CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE---- 603 (809)
Q Consensus 529 m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---- 603 (809)
+...+ +.+...+...... +...|+.+.|..+|+.+... .+.+...+...++.+.+.|+.+.|..+|++....
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99808-8867999999999987655778999999999986--10038899999999998698689999999999827898
Q ss_pred C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 9--987899999999961995499999988753699997
Q 003584 604 P--DATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 604 p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
| ....|...+.--..+|+.+.+..+.+++.++.|...
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 689999999999999984999999999999998771102
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=7.1e-09 Score=72.26 Aligned_cols=188 Identities=10% Similarity=0.086 Sum_probs=108.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHC
Q ss_conf 499887994099999999997249---9990002399999996499-4999999999998899988-8789999999980
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGK-GKEALQFYDQMLARGTKPD-YITFVGLLFACSH 550 (809)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 550 (809)
+.+...+.+.+..++|.++++++. ..+...|+.....+...|+ +++|+..+++.... .|+ ..++..+...+..
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 9999999958866999999999998798876999999999998376799999999999988--77422689887588885
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHHCCC------H
Q ss_conf 3979999999999678509998869999999998421998999999986769-9-998789999999996199------5
Q 003584 551 AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-E-PDATVWKALLSACRVHGD------L 622 (809)
Q Consensus 551 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~------~ 622 (809)
.|++++|+..+..+.+. -+.+...|..++.++.+.|++++|.+.++++.. . .+...|..+...+...+. .
T Consensus 125 l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 05378899887555432--1004688998877888888667899999999987974499998899999874563102354
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 4999999887536999971078696153215992699999999985
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+.|+..+.++++++|.+...+..++.++...| .+++...++...+
T Consensus 203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 203 EREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_conf 77679999999849885699999877988627-1889999999997
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.3e-09 Score=73.68 Aligned_cols=168 Identities=13% Similarity=-0.018 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC--C-CCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 0487499887994099999999997249--9-990002399999996499499999999999889998887899999999
Q 003584 472 LSVDNSLVLVYAKCGCINDANRVFDSMH--T-RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFAC 548 (809)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 548 (809)
..++..+..+|.+.|++++|...|+++. . .+..+|..+...|...|++++|...|++..+.. +.+......+..+.
T Consensus 71 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAE 149 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 89996004278887778875234468999876111158889999998766799999999998653-00078889999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-----CCC-HHHHHHHHHHHHHCCCH
Q ss_conf 803979999999999678509998869999999998421998999999986769-----999-87899999999961995
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-----EPD-ATVWKALLSACRVHGDL 622 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~p~-~~~~~~ll~~~~~~g~~ 622 (809)
...+..+....+....... .+....+. ++..+.................. .|+ ..+|..++..+...|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 225 (259)
T d1xnfa_ 150 QKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 225 (259)
T ss_dssp HHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCC---CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 8853587899999876403---14443455-7788888877777899999999986640845099999999999987899
Q ss_pred HHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 4999999887536999971078
Q 003584 623 ELGERAANNLFELEPMNAMPYV 644 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~ 644 (809)
+.|...+++++..+|++...|.
T Consensus 226 ~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 226 DSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9999999999983997799999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=3.2e-10 Score=81.20 Aligned_cols=167 Identities=11% Similarity=-0.018 Sum_probs=89.0
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCC---CEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 88799409999999999724999---900023999999964994999999999998899988878999999998039799
Q 003584 479 VLVYAKCGCINDANRVFDSMHTR---DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAE 555 (809)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 555 (809)
...+...+..+.|...++..... +..+|+.+...+...|++++|...+++.... .|+.. .....+...+..+
T Consensus 151 ~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~ 225 (334)
T d1dcea1 151 FVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPND 225 (334)
T ss_dssp HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHCCHH
T ss_conf 999874455289999999988718987999999999999826889899988776776--89999---9999998824414
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999678509998869999999998421998999999986769-99-98789999999996199549999998875
Q 003584 556 NARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLF 633 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (809)
++...+..... ...+....+..++..+...|+.++|...+.+... .| +..+|..++.++...|+.++|...+++++
T Consensus 226 ~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai 303 (334)
T d1dcea1 226 QSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 303 (334)
T ss_dssp SHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 88999998877--1866056788799999998669999999998876291379999999999987899999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 3699997107869615321
Q 003584 634 ELEPMNAMPYVQLSNMYST 652 (809)
Q Consensus 634 ~~~p~~~~~~~~l~~~~~~ 652 (809)
+++|.+...|..|...+.-
T Consensus 304 ~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 304 AVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHCGGGHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHH
T ss_conf 8796639999999999867
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=1.1e-07 Score=64.43 Aligned_cols=182 Identities=9% Similarity=0.038 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHCC----CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999997249----99900023999999964994999999999998899988878999999998039799999999
Q 003584 486 GCINDANRVFDSMH----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYF 561 (809)
Q Consensus 486 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 561 (809)
+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++...........+...+..+.+.|..+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 24599999999999874998799999999999861338999999999998715786999999999999827868899999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99678509998869999999998-421998999999986769--999878999999999619954999999887536999
Q 003584 562 ESMDKVYGIKPGPDHYACMIDLL-GRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 562 ~~m~~~~~~~p~~~~~~~l~~~~-~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
+.+.+. .+.+...|...+... ...|+.+.|..+++.+.. +.+...|...+......|+.+.|..++++++...|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 999980--888679999999999876557789999999999861003889999999999869868999999999982789
Q ss_pred CCC----CHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 971----0786961532159926999999999858
Q 003584 639 NAM----PYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 639 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++. .+...+..-...|+.+.+..+.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 86899999999999999849999999999999987
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=7.4e-09 Score=72.14 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 87499887994099999999997249---99900023999999964994999999999998899988-878999999998
Q 003584 474 VDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACS 549 (809)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 549 (809)
++..+..+|.+.|++++|...|++.. +.++.+|+.+...|...|++++|+..|+++... .|+ ..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 99999999998799999999999854349998899960042788877788752344689998--7611115888999999
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH----CCCHH
Q ss_conf 03979999999999678509998-869999999998421998999999986769-9998789999999996----19954
Q 003584 550 HAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRV----HGDLE 623 (809)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~p~~~~~~~ll~~~~~----~g~~~ 623 (809)
..|++++|...|+...+. .| +......+...+.+.+..+.+..+...... .+....+.. +..+.. .+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 876679999999999865---3000788899999998853587899999876403144434557-788888877777899
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999988753699997107869615321599269999999998589
Q 003584 624 LGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 670 (809)
.+...+.......|....+|..++.+|...|++++|...+++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 99999998664084509999999999998789999999999999839
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=8.5e-10 Score=78.36 Aligned_cols=55 Identities=5% Similarity=-0.105 Sum_probs=20.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999996199549999998875369999710786961532159926999999999
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLM 666 (809)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 666 (809)
++..+...++.+.|...+.+..+.+|.+...+..++.+|...|++++|...+++.
T Consensus 248 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a 302 (334)
T d1dcea1 248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 302 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999866999999999887629137999999999998789999999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=2.7e-07 Score=61.77 Aligned_cols=111 Identities=6% Similarity=-0.166 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CHHHHHHHH
Q ss_conf 8887899999999803979999999999678509998869999999998421998999999986769-99-987899999
Q 003584 536 PDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALL 613 (809)
Q Consensus 536 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll 613 (809)
|+...+......+...|++++|+..|+..... .+.+...|..++.+|.+.|++++|...++++.. .| +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 64999999999999869999999999999985--9998999981789874100000124788888871887389999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99996199549999998875369999710786961
Q 003584 614 SACRVHGDLELGERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
.++...|+++.|...++++++++|.+...+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99998799999999999998749556798999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4.6e-06 Score=53.67 Aligned_cols=138 Identities=7% Similarity=-0.087 Sum_probs=78.6
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8799409999999999724999900023999999964994999999999998899988-878999999998039799999
Q 003584 480 LVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENAR 558 (809)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 558 (809)
..+...|+++.|.+.|.++.+++...|..+...|...|++++|+..|++.++. .|+ ...|..+..++.+.|+.++|.
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99998779999999998648988999999999999858914678789999998--5523466788999998542499999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999678509998869999999998421998999999986769999-87899999999961995499999988753699
Q 003584 559 WYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPD-ATVWKALLSACRVHGDLELGERAANNLFELEP 637 (809)
Q Consensus 559 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (809)
..|+..... ..++... .+...| ...+.+ ..++..+..++...|+++.|...+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHH--CCCCCHH------HHHHHH-----------HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 999999986--7267367------899866-----------543630588999999999997899999999999983699
Q ss_pred C
Q ss_conf 9
Q 003584 638 M 638 (809)
Q Consensus 638 ~ 638 (809)
.
T Consensus 152 ~ 152 (192)
T d1hh8a_ 152 E 152 (192)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=2.8e-06 Score=55.08 Aligned_cols=24 Identities=13% Similarity=-0.008 Sum_probs=10.8
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 999619954999999887536999
Q 003584 615 ACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 615 ~~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.+...|+.+.|...+++..+++|.
T Consensus 208 ~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 208 CQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 999846599999999999975977
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=5.2e-06 Score=53.32 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=8.7
Q ss_pred HHHHHCCCHHHHHHHHHHCC
Q ss_conf 99842199899999998676
Q 003584 582 DLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~~~ 601 (809)
..+...|+.+.|...+++..
T Consensus 207 ~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 207 LCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHCCHHHHHHHHHHHH
T ss_conf 99998465999999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=1e-06 Score=57.92 Aligned_cols=97 Identities=13% Similarity=0.005 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 8869999999998421998999999986769--99987899999999961995499999988753699997107869615
Q 003584 572 PGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 572 p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
|+...+...+..|.+.|++++|...|+++.. +.++..|..++.++...|+++.|+..++++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 64999999999999869999999999999985999899998178987410000012478888887188738999999999
Q ss_pred HHHCCCHHHHHHHHHHHHH
Q ss_conf 3215992699999999985
Q 003584 650 YSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 650 ~~~~g~~~~A~~~~~~m~~ 668 (809)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
T ss_conf 9987999999999999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.7e-06 Score=53.03 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC----------
Q ss_conf 869999999998421998999999986769--99987899999999961995499999988753699997----------
Q 003584 573 GPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA---------- 640 (809)
Q Consensus 573 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---------- 640 (809)
+...+..++.++...|++++|.+.|++... +.++..|..++.++...|++++|...++++++..|.+.
T Consensus 35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~ 114 (192)
T d1hh8a_ 35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 114 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999999999998589146787899999985523466788999998542499999999999986726736789986654
Q ss_pred ------CCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf ------10786961532159926999999999858
Q 003584 641 ------MPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 641 ------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..+..++.+|...|++++|.+.+......
T Consensus 115 ~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 36305889999999999978999999999999836
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.5e-06 Score=53.14 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=41.6
Q ss_pred HHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 998421998999999986769--999878999999999619954999999887536999971078696153215992699
Q 003584 582 DLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDA 659 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 659 (809)
..+.+.|++++|...|++... +.+...|..++..+...|+++.|...++++++++|.+..+|..++.+|...|++++|
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999589999999866021100011333245678887405421288889999987544668779999999994999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999985
Q 003584 660 ARVRKLMKS 668 (809)
Q Consensus 660 ~~~~~~m~~ 668 (809)
...+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 998999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.7e-06 Score=53.06 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=60.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHH
Q ss_conf 99998421998999999986769--9998789999999996199549999998875369999710786961532159926
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWE 657 (809)
Q Consensus 580 l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 657 (809)
-+..+.+.|++++|...|++... +.++..|..++.++...|+++.|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 99999996999999999999886199601343000110110000112100134677740220267788999999812799
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999858
Q 003584 658 DAARVRKLMKSR 669 (809)
Q Consensus 658 ~A~~~~~~m~~~ 669 (809)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999984
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=8.4e-06 Score=51.93 Aligned_cols=105 Identities=14% Similarity=-0.003 Sum_probs=75.6
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCC
Q ss_conf 99999803979999999999678509998869999999998421998999999986769--9998789999999996199
Q 003584 544 LLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGD 621 (809)
Q Consensus 544 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~ 621 (809)
-...+...|++++|...|+...+. -+.+...|..+..++...|++++|...+.++.. +.++..|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999969999999999998861--996013430001101100001121001346777402202677889999998127
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 54999999887536999971078696153
Q 003584 622 LELGERAANNLFELEPMNAMPYVQLSNMY 650 (809)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (809)
++.|+..++++++++|+++..+..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999984989899999999783
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=9.4e-06 Score=51.62 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=70.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHHCCCH
Q ss_conf 9999803979999999999678509998869999999998421998999999986769-9-9987899999999961995
Q 003584 545 LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-E-PDATVWKALLSACRVHGDL 622 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~~ 622 (809)
...+...|++++|...|+...+. -+.+...|..+...+...|++++|...++++.. . .+..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999958999999986602110--0011333245678887405421288889999987544668779999999994999
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHH--HCCCHHHHHH
Q ss_conf 49999998875369999710786961532--1599269999
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYS--TAGKWEDAAR 661 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~ 661 (809)
++|...++++++++|.++..+..+..+.. ..+.++++..
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999899998729997999999999999999898999975
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.4e-07 Score=63.68 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999887159999999999998
Q 003584 404 SWTSLITGCAYHGSYEEALKYFSDM 428 (809)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~m 428 (809)
+|+.+...+...|+..+|+..|.+.
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999869999999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=3.3e-05 Score=48.01 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99999998421998999999986769-99-98789999999996199549999998875369999710786961532159
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 577 ~~~l~~~~~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
|..+..+|.+.|++++|...+++... .| ++..|..++.++...|+++.|...++++++++|+++.....+..+....+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999998864211011000000010022310346777999987222999999999999729898999999999999999
Q ss_pred CH
Q ss_conf 92
Q 003584 655 KW 656 (809)
Q Consensus 655 ~~ 656 (809)
..
T Consensus 145 ~~ 146 (170)
T d1p5qa1 145 RQ 146 (170)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=0.00021 Score=42.69 Aligned_cols=146 Identities=16% Similarity=0.034 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CC
Q ss_conf 99499999999999889998887899999999----80397999999999967850999886999999999842----19
Q 003584 517 GKGKEALQFYDQMLARGTKPDYITFVGLLFAC----SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR----SG 588 (809)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g 588 (809)
.+.+.|...+++....|.... ...+...+ ........+...+...... .+...+..|...+.. ..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHCCCCCCCC
T ss_conf 236779888765543214668---8763433237873310157788875552001----110104455556406887433
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH----CCCHHHHH
Q ss_conf 989999999867699998789999999996----1995499999988753699997107869615321----59926999
Q 003584 589 KLIEAKALLDQMVGEPDATVWKALLSACRV----HGDLELGERAANNLFELEPMNAMPYVQLSNMYST----AGKWEDAA 660 (809)
Q Consensus 589 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 660 (809)
....+..+++......+......|...+.. ..+.+.|+..+++..+.+ ++..+..|+.+|.. ..+.++|.
T Consensus 161 ~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~ 238 (265)
T d1ouva_ 161 DLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAI 238 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 4220001221132322223322113121267654310344454676653036--89999999999983999761899999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999985899
Q 003584 661 RVRKLMKSRGI 671 (809)
Q Consensus 661 ~~~~~m~~~g~ 671 (809)
+++++..+.|.
T Consensus 239 ~~~~kAa~~g~ 249 (265)
T d1ouva_ 239 ENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999998769
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.12 E-value=5.7e-06 Score=53.03 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=77.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9999998421998999999986769-99-987899999999961995499999988753699997107869615321599
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 578 ~~l~~~~~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
..++..+.+.|++++|...+++... .| ++..|..++.++...|+++.|+..++++++++|.++..+..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred HHHHHHHHHHHH
Q ss_conf 269999999998
Q 003584 656 WEDAARVRKLMK 667 (809)
Q Consensus 656 ~~~A~~~~~~m~ 667 (809)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999981
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=5.3e-05 Score=46.67 Aligned_cols=64 Identities=11% Similarity=-0.035 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 7899999999961995499999988753699997107869615321599269999999998589
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 670 (809)
.+|..+..+|...|+++.|+..++++++++|.++.++..++.+|...|++++|...++...+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998864211011000000010022310346777999987222999999999999729
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.07 E-value=8.7e-05 Score=45.21 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99999998421998999999986769--9998789999999996199549999998875369999710786961532159
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 577 ~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
|..+..+|.+.|++++|+..+++... +.+...|..++.++...|+++.|...++++++++|+++.....+..+....+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98499998776220110002232220131048899988999988278999999999999859898999999999999998
Q ss_pred C
Q ss_conf 9
Q 003584 655 K 655 (809)
Q Consensus 655 ~ 655 (809)
.
T Consensus 147 ~ 147 (168)
T d1kt1a1 147 E 147 (168)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=5.7e-05 Score=46.44 Aligned_cols=63 Identities=10% Similarity=0.049 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 789999999996199549999998875369999710786961532159926999999999858
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..|..+..++...|+++.|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999989999986402101366655443100022367776999999804799999999999985
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=3.8e-05 Score=47.60 Aligned_cols=106 Identities=12% Similarity=-0.051 Sum_probs=74.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHCCC-CCCH---HHHHHHHH
Q ss_conf 9999999803979999999999678509998869999999998421998---999999986769-9998---78999999
Q 003584 542 VGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKL---IEAKALLDQMVG-EPDA---TVWKALLS 614 (809)
Q Consensus 542 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~---~eA~~~~~~~~~-~p~~---~~~~~ll~ 614 (809)
..+++.+...+++++|.+.|+..... -+.+..++..++.++.+.++. ++|..+++++.. .|+. .+|..|+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 77988736999999999999998832--9998999999999999851267899999999999860699319999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99961995499999988753699997107869615
Q 003584 615 ACRVHGDLELGERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 615 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
+|...|+++.|+..++++++++|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99997316999999999997690989999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.97 E-value=0.00012 Score=44.30 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 89999999996199549999998875369999710786961532159926999999999858
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++..++.++...|+++.|+..++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99619999998465301110100010000000124677689999968999999999999982
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.00022 Score=42.61 Aligned_cols=85 Identities=6% Similarity=-0.082 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 69999999998421998999999986769--9998789999999996199549999998875369999710786961532
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 574 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
...+..+..++.+.|++++|+..++++.. +.++..|..++.++...|+++.|+..++++++++|++...+..+..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999899999864021013666554431000223677769999998047999999999999859899999999999999
Q ss_pred HCCCHHH
Q ss_conf 1599269
Q 003584 652 TAGKWED 658 (809)
Q Consensus 652 ~~g~~~~ 658 (809)
......+
T Consensus 157 ~l~~~~~ 163 (169)
T d1ihga1 157 KIKAQKD 163 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9998999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=6.4e-05 Score=46.11 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=57.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC-------HHHHHH
Q ss_conf 9999998421998999999986769--9998789999999996199549999998875369999710-------786961
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP-------YVQLSN 648 (809)
Q Consensus 578 ~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~ 648 (809)
..++..+.+.|++++|...|++... +.+...|..+..++...|+++.|+..++++++++|.++.. |..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999859999999999999884964589998688999881860778999999998680127889889999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHH
Q ss_conf 53215992699999999985
Q 003584 649 MYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 649 ~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+...+++++|...+++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHH
T ss_conf 99993889999999999984
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.82 E-value=0.00018 Score=43.09 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 87899999999961995499999988753699997107869615321599269999999998589
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 606 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 670 (809)
..++..+..++...|+++.|+..++++++++|.+..+|..++.+|...|++++|...++++.+..
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99998499998776220110002232220131048899988999988278999999999999859
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.82 E-value=0.00031 Score=41.52 Aligned_cols=123 Identities=11% Similarity=-0.102 Sum_probs=76.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 39999999649949999999999988999888789999999980397999999999967850999886999999999842
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR 586 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 586 (809)
......+...|++.+|+..|++.... .|.... ..-......... .....|..++..|.+
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~~~~~ 79 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCHHH-----------HHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_conf 99999999959999999999987760--730011-----------105778876310--------788999619999998
Q ss_pred CCCHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 1998999999986769-9-99878999999999619954999999887536999971078696153
Q 003584 587 SGKLIEAKALLDQMVG-E-PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMY 650 (809)
Q Consensus 587 ~g~~~eA~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (809)
.|++++|++.++++.. . .+..+|..++.++...|+++.|...++++++++|+++.....+..+.
T Consensus 80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 465301110100010000000124677689999968999999999999982989899999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=6.3e-05 Score=46.16 Aligned_cols=92 Identities=9% Similarity=-0.019 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCC--CCCHHHHHHHH
Q ss_conf 9999998421998999999986769--999878999999999619---9549999998875369999--71078696153
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHG---DLELGERAANNLFELEPMN--AMPYVQLSNMY 650 (809)
Q Consensus 578 ~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 650 (809)
..++..+...+++++|.+.|++... +.++.++..++.++...+ +.+.|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77988736999999999999998832999899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHC
Q ss_conf 2159926999999999858
Q 003584 651 STAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 651 ~~~g~~~~A~~~~~~m~~~ 669 (809)
...|++++|.+.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9973169999999999976
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.00026 Score=42.11 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 78999999999619954999999887536999971078696153215992699999999985
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
..+..++.++...|+++.|+..++++++.+|.+...|..++.+|...|++.+|.+.|+++..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999998879905789999999984985199999999999985579999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.52 E-value=9.4e-05 Score=45.00 Aligned_cols=131 Identities=15% Similarity=-0.002 Sum_probs=88.3
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCHH
Q ss_conf 99649949999999999988999888789999999980397999999999967850999886-99999999984219989
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLI 591 (809)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 591 (809)
....|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+ +.|+. ..+..+..++...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 988889999999999999978-99999999999999987999999999999998---69973899999999998346637
Q ss_pred HHHHHHHHCCC--CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99999986769--9998-78999999999619954999999887536999971078696
Q 003584 592 EAKALLDQMVG--EPDA-TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 592 eA~~~~~~~~~--~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
++..-...... +|+. ..+...+..+...|+.+.|...++++.+..|..+..+....
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~ 140 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89987544420358647999999999999679989999999999833999981001557
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0019 Score=36.35 Aligned_cols=91 Identities=14% Similarity=0.043 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHH
Q ss_conf 999999964994999999999998899988878999999998039799999999996785099988-----699999999
Q 003584 508 ALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-----PDHYACMID 582 (809)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~ 582 (809)
.+...+...|++++|+..|++.+... +.+...+..+..++...|++++|...++.+.+...-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998599999999999998849-64589998688999881860778999999998680127889889999999999
Q ss_pred HHHHCCCHHHHHHHHHH
Q ss_conf 98421998999999986
Q 003584 583 LLGRSGKLIEAKALLDQ 599 (809)
Q Consensus 583 ~~~~~g~~~eA~~~~~~ 599 (809)
.+...+++++|.+.+++
T Consensus 88 ~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHH
T ss_conf 99993889999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.38 E-value=0.0012 Score=37.80 Aligned_cols=87 Identities=11% Similarity=-0.002 Sum_probs=44.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
Q ss_conf 999999964994999999999998899988-87899999999803979999999999678509998-8699999999984
Q 003584 508 ALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLG 585 (809)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 585 (809)
.+...+.+.|++++|+..|++.... .|+ ..++..+..++...|++++|...++...+. .| +...+..++..|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHH
T ss_conf 9999999876058999988610112--1111001233545641012587741000001111---1100000378999999
Q ss_pred HCCCHHHHHHHHHH
Q ss_conf 21998999999986
Q 003584 586 RSGKLIEAKALLDQ 599 (809)
Q Consensus 586 ~~g~~~eA~~~~~~ 599 (809)
..|+.++|.+.+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
T ss_conf 97899999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.35 E-value=0.0035 Score=34.64 Aligned_cols=309 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 99980219999999852799399999998418998235999999987159934899996019999911089999999808
Q 003584 32 SVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNY 111 (809)
Q Consensus 32 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 111 (809)
+.+.......+..-|...|..+.|..++..+.. +..++..|.+.+++..|..++.+.. +..+|..+..++.+.
T Consensus 10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDG 82 (336)
T ss_dssp TCC----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC-----HHHHHHHHHHHCCHHHHHHHHHHCC--CHHHHHHHHHHHHHC
T ss_conf 589857899999999878779999999986789-----9999999970315999999998808--899999999999727
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99046999999979869998914189899886237980599999999999388976688999999436079924799976
Q 003584 112 GLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLF 191 (809)
Q Consensus 112 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 191 (809)
.....+ .+.......++.....++..+-..+..+....+++...... ..+..+++.++.+|++.+.......+-
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~~kl~e~l~ 156 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 156 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 287899-----99998753578878999999987698599999999997577-444679999999999869499999998
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 21899999334889998873079948999999997777999994009999999732399079999999999819998444
Q 003584 192 KMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVY 271 (809)
Q Consensus 192 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 271 (809)
.. .+......++..+-+.+.+.++.-++..+... ......|+.+ +++..
T Consensus 157 ~~----s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~-------------------------~~A~~~~i~~--~~~~~ 205 (336)
T d1b89a_ 157 LF----WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-------------------------DNAIITMMNH--PTDAW 205 (336)
T ss_dssp HH----STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH-------------------------HHHHHHHHHS--TTTTC
T ss_pred HC----CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH-------------------------HHHHHHHHHC--CHHHH
T ss_conf 60----23599999999988748749999999855879-------------------------9999999976--54456
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 89999998880799479999985069999221999999999259916899999997988999996417889998614799
Q 003584 272 VQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351 (809)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 351 (809)
-....+..+.+..+.+...++.....+.++...+.++......-+.....+.+++ .++
T Consensus 206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k----------------------~~~ 263 (336)
T d1b89a_ 206 KEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK----------------------VKQ 263 (336)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHH----------------------TTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHH----------------------CCC
T ss_conf 6999999997247869999999999975999999999985657998999999985----------------------388
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 3779999999998435783479999999999429988999999525999876999999
Q 003584 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLI 409 (809)
Q Consensus 352 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 409 (809)
+......++.....+ +..+.++|...|...++++.-+...+....-|......-.
T Consensus 264 l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~~~~fd~~~l~~~l 318 (336)
T d1b89a_ 264 LPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRL 318 (336)
T ss_dssp TTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHCCCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 077999999999818---0999999999986712467899999871343799999887
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.23 E-value=0.00025 Score=42.18 Aligned_cols=122 Identities=9% Similarity=-0.051 Sum_probs=56.2
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 9649949999999999988999888-789999999980397999999999967850999886999999999842199899
Q 003584 514 AQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~e 592 (809)
-+.+.+++|+..|++..+. .|+. ..+..+..++...++...+.+ ..+.+++
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~~ 59 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHH
T ss_conf 9873699999999999861--88310899999999987621333367--------------------------7887888
Q ss_pred HHHHHHHCCC--CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 9999986769--999878999999999619-----------954999999887536999971078696153215992699
Q 003584 593 AKALLDQMVG--EPDATVWKALLSACRVHG-----------DLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDA 659 (809)
Q Consensus 593 A~~~~~~~~~--~p~~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 659 (809)
|...++++.. +.+..+|..++.++...| +++.|...++++++++|++...+..|.... .|
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka 132 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KA 132 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------TH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-------HH
T ss_conf 99999998873012058776689999870101135788988678763121100025988899999999999-------97
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998589
Q 003584 660 ARVRKLMKSRG 670 (809)
Q Consensus 660 ~~~~~~m~~~g 670 (809)
.++.....++|
T Consensus 133 ~~~~~e~~k~~ 143 (145)
T d1zu2a1 133 PQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHH
T ss_conf 97899999873
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.07 E-value=0.0013 Score=37.41 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=10.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7869615321599269999999998
Q 003584 643 YVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
|..++.+|...|++++|...+++..
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7526999998888888899999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.05 E-value=0.0006 Score=39.67 Aligned_cols=121 Identities=13% Similarity=0.020 Sum_probs=83.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHHCCCHHHH
Q ss_conf 9803979999999999678509998869999999998421998999999986769-9998-7899999999961995499
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDA-TVWKALLSACRVHGDLELG 625 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~p~~-~~~~~ll~~~~~~g~~~~A 625 (809)
....|++++|...++...+ .-+.+...+..++.+|...|++++|...++.... .|+. ..+..+...+...+..+.+
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 9888899999999999999--78999999999999999879999999999999986997389999999999834663789
Q ss_pred HHHHHHHHC-CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999988753-699997107869615321599269999999998589
Q 003584 626 ERAANNLFE-LEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 626 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 670 (809)
......... .+|++...+...+..+...|+.++|...+....+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9875444203586479999999999996799899999999998339
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.93 E-value=0.00032 Score=41.44 Aligned_cols=84 Identities=8% Similarity=-0.010 Sum_probs=46.4
Q ss_pred HCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 21998999999986769--9998789999999996----------19954999999887536999971078696153215
Q 003584 586 RSGKLIEAKALLDQMVG--EPDATVWKALLSACRV----------HGDLELGERAANNLFELEPMNAMPYVQLSNMYSTA 653 (809)
Q Consensus 586 ~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (809)
|.+.+++|...+++... +.++.++..++.++.. .+.++.|+..++++++++|+++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 87369999999999986188310899999999987621333367788788899999998873012058776689999870
Q ss_pred CC-----------HHHHHHHHHHHHHC
Q ss_conf 99-----------26999999999858
Q 003584 654 GK-----------WEDAARVRKLMKSR 669 (809)
Q Consensus 654 g~-----------~~~A~~~~~~m~~~ 669 (809)
|+ +++|.+.+++..+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 101135788988678763121100025
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.82 E-value=0.011 Score=31.43 Aligned_cols=33 Identities=9% Similarity=-0.144 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 899999999961995499999988753699997
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.+..++.++...|++++|...+++++++.|...
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 775269999988888888999999998668742
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.72 E-value=0.013 Score=30.90 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=35.8
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHCCCCCHHH
Q ss_conf 2399999996499499999999999889998887899999999803979999999999678----5099988699
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDK----VYGIKPGPDH 576 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 576 (809)
+..+...+...|++++|+..++++.... +-+...+..++.++...|+..+|.+.|+.+.. ..|+.|...+
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999988799057899999999849-8519999999999998557999999999999998998489968999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0049 Score=33.63 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCC--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 9999999998421998999999986769--------999-8789999999996199549999998875369999710786
Q 003584 575 DHYACMIDLLGRSGKLIEAKALLDQMVG--------EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQ 645 (809)
Q Consensus 575 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~--------~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (809)
+.+..++..+.+.|++++|...+++... .++ ..++..|+.++...|+++.|...++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999999977999999999999998865301476478999987268886577398887887798869297999999
Q ss_pred HHH
Q ss_conf 961
Q 003584 646 LSN 648 (809)
Q Consensus 646 l~~ 648 (809)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.016 Score=30.33 Aligned_cols=61 Identities=13% Similarity=-0.062 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999996199549999998875369999-------710786961532159926999999999858
Q 003584 609 WKALLSACRVHGDLELGERAANNLFELEPMN-------AMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+-.++..+...|+++.|...+++++++.|.+ +.++..|+.+|.+.|++++|...++++.+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999997799999999999999886530147647899998726888657739888788779886
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=95.95 E-value=0.033 Score=28.12 Aligned_cols=48 Identities=10% Similarity=-0.112 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHCCC
Q ss_conf 989999999867699998789999999996----199549999998875369
Q 003584 589 KLIEAKALLDQMVGEPDATVWKALLSACRV----HGDLELGERAANNLFELE 636 (809)
Q Consensus 589 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~ 636 (809)
+.++|..++++.....++..+..|+..+.. ..|.+.|...++++.+.+
T Consensus 197 d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 197 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 0344454676653036899999999999839997618999999999999876
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.24 Score=22.43 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=48.2
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99436079924799976218999993348899988730799489999999977779999940099999997323990799
Q 003584 175 VDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFG 254 (809)
Q Consensus 175 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 254 (809)
+..+.+.++.......+...|. +...--....+....|+...|...+...-..|.. ..+..
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p~--~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c 139 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKPG--TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNAC 139 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCCS--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHH
T ss_pred HHHHHHCCCHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-----------------CCHHH
T ss_conf 9998765688999976668999--9999999999998759848899999999854787-----------------83589
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 999999998199984448999999888079947999998506999
Q 003584 255 AQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEID 299 (809)
Q Consensus 255 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (809)
..++..+.+.| ..+....-.-+......|+...|..+...++..
T Consensus 140 ~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~ 183 (450)
T d1qsaa1 140 DKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD 183 (450)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 99999987447-898999999999998869815699887517855
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.07 E-value=0.54 Score=20.12 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=16.8
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 996199549999998875369999710786961532159926999999
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (809)
+...|....|...+..+.... ++.-...++.+..+.|.++.|+...
T Consensus 391 L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 391 LMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 998699469999999998679--9999999999999879846999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.78 E-value=0.63 Score=19.69 Aligned_cols=47 Identities=11% Similarity=-0.008 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf 5499999988753699997107869615321----599269999999998589
Q 003584 622 LELGERAANNLFELEPMNAMPYVQLSNMYST----AGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 670 (809)
.+.|...+++..+.. ++.....|+.+|.. ..+.++|.+++++..+.|
T Consensus 75 ~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 75 LRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 578888875000257--406778999999829846778999999999999878
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.52 E-value=0.65 Score=19.61 Aligned_cols=141 Identities=9% Similarity=0.028 Sum_probs=79.3
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99649949999999999988999888789999999980397999999999967850999886999999999842199899
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~e 592 (809)
+...|..++..++..+...+ .+..-++.++--....-+-+...+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHH--------------HHCHHH
T ss_conf 98742488679999998466---7755124454524300026899999998763408524--------------326789
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999867699998789999999996199549999998875369999710786961532159926999999999858994
Q 003584 593 AKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIR 672 (809)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 672 (809)
....+-.+- .+.......+.....+|.-+.-..+++.+++.+..+|.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999998836--218999999999998260878999999987537998799999999998852244489999999997599
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.04 E-value=0.9 Score=18.67 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 899999999961995499999988753699997
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.|-.|.-+|...|+++.|...++++++++|++.
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999999999987329999999999982399849
|