Citrus Sinensis ID: 003592

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
MEFDLNHAATTEGEKIAFCNGDCGKNNSGCVCYLNSSSSSSSCSANSSSSSSLSSSIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLLANKENDEVYTQVALLPQPELEGLNLEAKQLEDLGVDEEGGGRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPRMKKLRTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHPLGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFNGTAAGCKLFGFSLTSETPTPSSQSPGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIMEVSVSKSSSVSQPDSSPTVVRV
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEccccHHHHHcccccccccccccccccccccEEEEEEEEEcccccccEEEEHHccccccccccccHHHHcccccccccccccccccccccEEEEEEEccccccccccEEcccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccEEEcccccccccccccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccccHHHHHcccccccEEEEEEccccccccccccHHHHHHHHccccccccEEEEEEcccccccEEEEccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEcccccEEEEccccHHHHHHHccEEEEEcHHHHHccccccccccccccccccccccccccccccccccccccccccc
ccEEccccHEEEEcccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHcccccEccccccEEEEcccccHHHHHHcccccHcccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccHHHHHHcccHHccccccccccccccccccccHHHEEcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccEcccccHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHccccEEEEEEEEEEcccccccEcccEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEcEEEEEEEccccHHHHHHHHHHHHcccccccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHccccccHHcHHHHHcccEEEEEEEcccccccccccccEEEEc
mefdlnhaattegekiafcngdcgknnsgcvcylnssssssscsansssssslsssIYFELWHacagpltslpkkgnvvvyfpqghleqvasssafppievpnfdlqpqifckVVDVQLLANKENDEVYTQVallpqpeleglNLEAKQledlgvdeegggrsptkstphmfcktltasdtsthggfsvprraaedcfppldykqqrpsqeLVAKDLhgvewrfrhiyrgqprrhlltTGWSIFVSQknlvsgdavlflrgkdgelrlgirrsvqprnglpdsilskqnsypNVLSVVANAVstksmfhvfysprathadfvipYQKYVKIIMnpicigtrfkmrfemddsperrcngvvtgitdldpyrwpnskwrclmvrwdecigsdhqeqvspweidrsvslpplsiqssprmkklrtglqapppdypvsargggvldfEESVRSSkvlqgqenvgfvsplygcdtvnhplgfemrapahqslalngirKDNINELVRALptsytgfvesnrfpkvlqgqeicplrsltgkvdlnlgtwgkpnfgcnsmnmyqaskpniypppseslsnmffpygdmpktvqhhtmppyasnlqrenvklnsssiqmpaIGAEIRKANllnehkpveniptptfkanmrshkdgsfngtaagcklfgfsltsetptpssqspgkrsctkvhkqgslVGRAIDLWRLNGYNDLLSELEHLFNmegllrdpakgwrilytdsendvmvvgddpwheFCNEVSKIHIYTQEEvekmtigttddtqscldqapviMEVSVsksssvsqpdssptvvrv
mefdlnhaattegekiAFCNGDCGKNNSGCVCYLNSSSSSSSCSANSSSSSSLSSSIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLLANKENDEVYTQVALLPQPELEGLNLEAKQLEDLGVdeegggrsptkstphMFCKTLTASDTSTHGGFSVPRRAAEDCFPPldykqqrpsqelvaKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLrgkdgelrlgirrsvqprnglpdsilskqnsyPNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNgvvtgitdldpyrwpNSKWRCLMVRWDECIGSdhqeqvspweidrsvslpplsiqssPRMKKLRTGLQAPPPDYPVSARGGGVLDFEESVRSskvlqgqenvgfvspLYGCDTVNHPLGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFNGTAAGCKLFGFSLTSetptpssqspgkrsctkvhkqgslvgraidLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIMEVsvsksssvsqpdssptvvrv
MEFDLNHAATTEGEKIAFCNGDCGKNNSGCVCYLNssssssscsansssssslsssIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLLANKENDEVYTQVALLPQPELEGLNLEAKQledlgvdeegggRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPRMKKLRTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHPLGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFNGTAAGCKLFGFsltsetptpssqspGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIMEvsvsksssvsqpdssptvvRV
********************************************************IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLLANKENDEVYTQVALLPQ**************************************************************************LVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRR****************NSYPNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDH************************************************************VLQGQENVGFVSPLYGCDTVNHPLGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMY************************************************************************************************TAAGCKLFGFS***********************QGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTD****CL*****************************
*E*****AAT**************************************************LWHACAGPLTSLPKKGNVVVYFPQGHLEQV**************DLQPQIFCKVVDVQLLANKENDEVYTQVALLPQPEL*****************************HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLD******S**LVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQP***********************NAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVS*************************************************************************************************************************************************************************************************************************************************************************************************IDLWRLNGYNDLLSELEHLFNME********GWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYT************************************************
********ATTEGEKIAFCNGDCGKNNSGCVCYL*********************SIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLLANKENDEVYTQVALLPQPELEGLNLEAKQLEDLGV***********STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPRMKKLRTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHPLGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFNGTAAGCKLFGFSLT*******************HKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIMEV********************
*EFDLNHAATTEGEKIAFCNGDCGKNNSGC************************SSIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLLANKENDEVYTQVALLPQPELE**NLE********************STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPRMK***********************D****VRSSKVLQGQENVGFVSPLY*****N************************************************************************************************************************************************************************************************************GKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIMEVSVSK*********SPTV***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEFDLNHAATTEGEKIAFCNGDCGKNNSGCVCYLNSSSSSSSCSANSSSSSSLSSSIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLLANKENDEVYTQVALLPQPELEGLNLEAKQLEDLGVDEEGGGRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPRMKKLRTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHPLGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFNGTAAGCKLFGFSLTSETPTPSSQSPGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIMEVSVSKSSSVSQPDSSPTVVRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query808 2.2.26 [Sep-21-2011]
Q9ZTX9788 Auxin response factor 4 O yes no 0.891 0.913 0.638 0.0
Q5JK20808 Auxin response factor 4 O yes no 0.862 0.862 0.379 1e-135
O23661608 Auxin response factor 3 O no no 0.539 0.717 0.512 1e-131
Q8S985712 Auxin response factor 15 no no 0.789 0.896 0.416 1e-127
Q0JKI9718 Auxin response factor 2 O no no 0.763 0.859 0.4 1e-125
Q5JMM1731 Auxin response factor 3 O no no 0.726 0.803 0.426 1e-116
Q94JM3859 Auxin response factor 2 O no no 0.506 0.476 0.468 1e-111
Q2R3F5853 Auxin response factor 23 no no 0.726 0.688 0.391 1e-108
A2ZET6853 Auxin response factor 23 N/A no 0.726 0.688 0.391 1e-107
Q0DGS1687 Auxin response factor 14 no no 0.570 0.671 0.462 1e-107
>sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=1 SV=1 Back     alignment and function desciption
 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/759 (63%), Positives = 553/759 (72%), Gaps = 39/759 (5%)

Query: 57  IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVD 116
           IY ELWHACAGPLT LPKKGNVVVYFPQGHLEQ A  S   P+E+P FDL PQI C+VV+
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVVN 121

Query: 117 VQLLANKENDEVYTQVALLPQPELEGLNLEAKQLEDLGVDEEGGGRSPTKSTPHMFCKTL 176
           VQLLANK+ DEVYTQV LLP  E   LN E K++++LG +EE  G S  K TPHMFCKTL
Sbjct: 122 VQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTL 181

Query: 177 TASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHL 236
           TASDTSTHGGFSVPRRAAEDCF PLDYKQQRPSQEL+AKDLHGVEW+FRHIYRGQPRRHL
Sbjct: 182 TASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHL 241

Query: 237 LTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLS 296
           LTTGWSIFVSQKNLVSGDAVLFLR + GELRLGIRR+ +PRNGLPDSI+ K NS  N+LS
Sbjct: 242 LTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEK-NSCSNILS 300

Query: 297 VVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRC 356
           +VANAVSTKSMFHVFYSPRATHA+FVIPY+KY+  I +P+CIGTRF+MRFEMDDSPERRC
Sbjct: 301 LVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERRC 360

Query: 357 NGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPR 416
            GVVTG+ DLDPYRWPNSKWRCL+VRWDE   SDHQE+VSPWEID SVSLP LSIQSSPR
Sbjct: 361 AGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSPR 420

Query: 417 MKKLRTG-LQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHP- 474
            K+   G L   PP  P++ R GG LDFEESVR SKVLQGQEN+G  SP  G D +N   
Sbjct: 421 PKRPWAGLLDTTPPGNPITKR-GGFLDFEESVRPSKVLQGQENIGSASPSQGFDVMNRRI 479

Query: 475 LGFEMRAPAHQSLALNGIRKDNINELVRA--LPTSYTGFVESNRFPKVLQGQEICPLRSL 532
           L F M++ A+  L  + + KD   E V A  +  + +G ++ +RFP+VLQGQEIC L+S 
Sbjct: 480 LDFAMQSHANPVLVSSRV-KDRFGEFVDATGVNPACSGVMDLDRFPRVLQGQEICSLKSF 538

Query: 533 TGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPP 592
                 +      P         YQA+K + YP     + +   PY +        + PP
Sbjct: 539 PQFAGFSPAAAPNP-------FAYQANKSSYYPLALHGIRSTHVPYQNPYNAGNQSSGPP 591

Query: 593 YASNLQRENVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPT-FKANMRSHKDGS-F 650
                        S +I     G E RK +  NE     N+     FK +M   + GS  
Sbjct: 592 -------------SRAIN---FGEETRKFDAQNEGGLPNNVTADLPFKIDMMGKQKGSEL 635

Query: 651 NGTA-AGCKLFGFSLTSETPTPSSQSPGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSE 709
           N  A +GCKLFGFSL  ETP    QS  KR CTKVHKQGS VGRAIDL RLNGY+DLL E
Sbjct: 636 NMNASSGCKLFGFSLPVETPASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLME 695

Query: 710 LEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTI 769
           LE LFNMEGLLRDP KGWRILYTDSEND+MVVGDDPWH+FCN V KIH+YT+EEVE    
Sbjct: 696 LERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVEN--- 752

Query: 770 GTTDDTQSCLDQAPVIMEVSVSKSSSVSQPDSSPTVVRV 808
              DD +SCL+QA ++ME   SKSSSVSQPDSSPT+ RV
Sbjct: 753 -ANDDNKSCLEQAALMME--ASKSSSVSQPDSSPTITRV 788
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5JK20|ARFD_ORYSJ Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1 Back     alignment and function description
>sp|O23661|ARFC_ARATH Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2 Back     alignment and function description
>sp|Q8S985|ARFO_ORYSJ Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1 Back     alignment and function description
>sp|Q0JKI9|ARFB_ORYSJ Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1 Back     alignment and function description
>sp|Q5JMM1|ARFC_ORYSJ Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1 Back     alignment and function description
>sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2 Back     alignment and function description
>sp|Q2R3F5|ARFW_ORYSJ Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2 Back     alignment and function description
>sp|A2ZET6|ARFW_ORYSI Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1 Back     alignment and function description
>sp|Q0DGS1|ARFN_ORYSJ Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
359479063798 PREDICTED: auxin response factor 4-like 0.985 0.997 0.772 0.0
255570833810 Auxin response factor, putative [Ricinus 0.974 0.971 0.759 0.0
356544621791 PREDICTED: auxin response factor 4-like 0.976 0.997 0.691 0.0
356543436793 PREDICTED: auxin response factor 4-like 0.975 0.993 0.671 0.0
350537149811 auxin response factor 4 [Solanum lycoper 0.996 0.992 0.684 0.0
356541288791 PREDICTED: auxin response factor 4-like 0.976 0.997 0.692 0.0
87241206810 Transcriptional factor B3; Auxin respons 0.992 0.990 0.664 0.0
357453821822 Auxin response factor [Medicago truncatu 0.992 0.975 0.654 0.0
449524944802 PREDICTED: auxin response factor 4-like 0.982 0.990 0.653 0.0
259027688808 putative ARF4 protein [Petunia x hybrida 0.991 0.991 0.645 0.0
>gi|359479063|ref|XP_002285019.2| PREDICTED: auxin response factor 4-like [Vitis vinifera] gi|297746231|emb|CBI16287.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1228 bits (3178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/810 (77%), Positives = 683/810 (84%), Gaps = 14/810 (1%)

Query: 1   MEFDLNHAATTEGEKIAFCNGDCGKNNSGCVCYLNSSSSSSSCSANSSSSSSLSSSIYFE 60
           ME DLNHA T E EK AFCNGDC K +         SSSSSS SA++SS+S  SSSIY E
Sbjct: 1   MEIDLNHAVT-EVEKHAFCNGDCDKASC----VCCLSSSSSSSSASNSSASPDSSSIYLE 55

Query: 61  LWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLL 120
           LWH CAG LTSLPKKGNVVVYFPQGHLEQ ASSS FPP+++  FDL PQIFC+VV+VQLL
Sbjct: 56  LWHVCAGRLTSLPKKGNVVVYFPQGHLEQAASSSPFPPMDISTFDLPPQIFCRVVNVQLL 115

Query: 121 ANKENDEVYTQVALLPQPELEGLNLEAKQLEDLGVDEEGGGRSPTKSTPHMFCKTLTASD 180
           ANKENDEVYTQV LLPQPEL G+NLE K+LE LGVDEEGGG SPTKSTPHMFCKTLTASD
Sbjct: 116 ANKENDEVYTQVTLLPQPELAGINLEGKELEGLGVDEEGGGGSPTKSTPHMFCKTLTASD 175

Query: 181 TSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTG 240
           TSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTG
Sbjct: 176 TSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTG 235

Query: 241 WSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVAN 300
           WSIFVSQKNLVSGDAVLFLRG+ GELRLGIRR+V+PRNGLPDSI+  QNSYPNVLS+ AN
Sbjct: 236 WSIFVSQKNLVSGDAVLFLRGEGGELRLGIRRAVRPRNGLPDSIIGNQNSYPNVLSLAAN 295

Query: 301 AVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVV 360
           AV+TKSMFHVFYSPRA+HA+FVIPYQKYVK I NPI IGTRFKMR++MDDSPERR +GVV
Sbjct: 296 AVATKSMFHVFYSPRASHAEFVIPYQKYVKSITNPISIGTRFKMRYDMDDSPERRSSGVV 355

Query: 361 TGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPRMKKL 420
           TGI DLDPYRWPNSKWRCLMVRWD+ I SD QE+VSPWEID SVSLPPLSIQSSPR+KKL
Sbjct: 356 TGIGDLDPYRWPNSKWRCLMVRWDDDIVSDPQERVSPWEIDPSVSLPPLSIQSSPRLKKL 415

Query: 421 RTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHPLGFEMR 480
           RT LQA PP+ P++  GGG LDFEESVRSSKVLQGQENVGFVSPLYGCD VN  L FEM+
Sbjct: 416 RTSLQATPPNNPING-GGGFLDFEESVRSSKVLQGQENVGFVSPLYGCDKVNRSLDFEMQ 474

Query: 481 APAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNL 540
            P   SLA  GI K N  E +RA PT+YTGF+ES+RFPKVLQGQEI PLRSL GK D NL
Sbjct: 475 NP---SLASTGIEKANFCEFMRAPPTTYTGFLESDRFPKVLQGQEIGPLRSLAGKSDFNL 531

Query: 541 GTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRE 600
           G+WGKPN GCN  NMYQ  KPN YP  SE + NM+FPY D+ K  Q   M  YASN  RE
Sbjct: 532 GSWGKPNLGCNLFNMYQKPKPNFYPLASEGIRNMYFPYNDIYKGGQDPVMLSYASNFPRE 591

Query: 601 NVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPT-PTFKANMRSHKDGSFNGTAAGCKL 659
           NV  N SSI+   IG E+RK N+ NE KP ENI   P  + N++  KD +F+GTAAGCKL
Sbjct: 592 NVPFNPSSIRSGVIGTEVRKLNIPNEPKPPENISAPPNLETNLKHQKDDTFSGTAAGCKL 651

Query: 660 FGFSLTSETPTPSSQSPGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGL 719
           FGFSLT ETP P+SQ+ GKRSCTKVHKQG+LVGRAIDL RLNGY DL SELE LF MEGL
Sbjct: 652 FGFSLTGETP-PNSQNSGKRSCTKVHKQGNLVGRAIDLSRLNGYGDLFSELERLFGMEGL 710

Query: 720 LRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIG-TTDDTQSC 778
           LRDP KGW+ILYTDSEND+MVVGDDPWHEFCN VSKIHIYTQEEVEKMTIG  +DDTQSC
Sbjct: 711 LRDPDKGWQILYTDSENDMMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGIISDDTQSC 770

Query: 779 LDQAPVIMEVSVSKSSSVSQPDSSPTVVRV 808
           L++APVI++  VSKSSSV QPDSSPTV+R+
Sbjct: 771 LEEAPVILD--VSKSSSVGQPDSSPTVIRI 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570833|ref|XP_002526369.1| Auxin response factor, putative [Ricinus communis] gi|223534328|gb|EEF36040.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356544621|ref|XP_003540747.1| PREDICTED: auxin response factor 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356543436|ref|XP_003540166.1| PREDICTED: auxin response factor 4-like [Glycine max] Back     alignment and taxonomy information
>gi|350537149|ref|NP_001233771.1| auxin response factor 4 [Solanum lycopersicum] gi|85069287|gb|ABC69715.1| auxin response factor 4 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|356541288|ref|XP_003539110.1| PREDICTED: auxin response factor 4-like [Glycine max] Back     alignment and taxonomy information
>gi|87241206|gb|ABD33064.1| Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation [Medicago truncatula] Back     alignment and taxonomy information
>gi|357453821|ref|XP_003597191.1| Auxin response factor [Medicago truncatula] gi|355486239|gb|AES67442.1| Auxin response factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|449524944|ref|XP_004169481.1| PREDICTED: auxin response factor 4-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|259027688|gb|ACV91105.1| putative ARF4 protein [Petunia x hybrida] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.740 0.758 0.592 1.2e-232
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.483 0.455 0.469 9.2e-133
TAIR|locus:2057609608 ETT "ETTIN" [Arabidopsis thali 0.492 0.654 0.552 2.8e-125
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.454 0.551 0.471 1.4e-120
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.410 0.305 0.501 7.3e-117
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.433 0.374 0.506 6.1e-114
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.415 0.414 0.509 1.1e-112
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.415 0.526 0.475 1e-111
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.445 0.598 0.462 9e-111
TAIR|locus:2035454 902 MP "MONOPTEROS" [Arabidopsis t 0.417 0.373 0.505 2.4e-108
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1759 (624.3 bits), Expect = 1.2e-232, Sum P(2) = 1.2e-232
 Identities = 366/618 (59%), Positives = 423/618 (68%)

Query:     1 MEFDLN-HAATTEGEK---IAFCNGDCGKNNSGCVCYL-NXXXXXXXXXXXXXXXXXXXX 55
             MEFDLN   A  E E+   +    G   + + G +    +                    
Sbjct:     1 MEFDLNTEIAEVEEEENDDVGVGVGGGTRIDKGRLGISPSSSSSCSSGSSSSSSSTGSAS 60

Query:    56 XIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVV 115
              IY ELWHACAGPLT LPKKGNVVVYFPQGHLEQ A  S   P+E+P FDL PQI C+VV
Sbjct:    61 SIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVV 120

Query:   116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
             +VQLLANK+ DEVYTQV LLP  E   LN E K+             S  K TPHMFCKT
Sbjct:   121 NVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKT 180

Query:   176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
             LTASDTSTHGGFSVPRRAAEDCF PLDYKQQRPSQEL+AKDLHGVEW+FRHIYRGQPRRH
Sbjct:   181 LTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRH 240

Query:   236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
             LLTTGWSIFVSQKNLVSGDAVLFLR + GELRLGIRR+ +PRNGLPDSI+ K NS  N+L
Sbjct:   241 LLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEK-NSCSNIL 299

Query:   296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
             S+VANAVSTKSMFHVFYSPRATHA+FVIPY+KY+  I +P+CIGTRF+MRFEMDDSPERR
Sbjct:   300 SLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERR 359

Query:   356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP 415
             C GVVTG+ DLDPYRWPNSKWRCL+VRWDE   SDHQE+VSPWEID SVSLP LSIQSSP
Sbjct:   360 CAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSP 419

Query:   416 RMKKLRTGL-QAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHP 474
             R K+   GL    PP  P++ RGG  LDFEESVR SKVLQGQEN+G  SP  G D +N  
Sbjct:   420 RPKRPWAGLLDTTPPGNPITKRGG-FLDFEESVRPSKVLQGQENIGSASPSQGFDVMNRR 478

Query:   475 -LGFEMRAPAHQSLALNGIRKDNINELVRA--LPTSYTGFVESNRFPKVLQGQEICPLRS 531
              L F M++ A+  L  + + KD   E V A  +  + +G ++ +RFP+VLQGQEIC L+S
Sbjct:   479 ILDFAMQSHANPVLVSSRV-KDRFGEFVDATGVNPACSGVMDLDRFPRVLQGQEICSLKS 537

Query:   532 LTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMP 591
                    +      P F       YQA+K + YP     + +   PY +        + P
Sbjct:   538 FPQFAGFSPAAAPNP-FA------YQANKSSYYPLALHGIRSTHVPYQNPYNAGNQSSGP 590

Query:   592 PY-ASNLQRENVKLNSSS 608
             P  A N   E  K ++ +
Sbjct:   591 PSRAINFGEETRKFDAQN 608
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010158 "abaxial cell fate specification" evidence=IGI
GO:0010050 "vegetative phase change" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZTX9ARFD_ARATHNo assigned EC number0.63890.89100.9137yesno
Q5JK20ARFD_ORYSJNo assigned EC number0.37910.86260.8626yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024505001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (798 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 1e-44
pfam0236297 pfam02362, B3, B3 DNA binding domain 5e-28
smart0101996 smart01019, B3, B3 DNA binding domain 3e-25
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 7e-22
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 1e-21
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 1e-05
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 2e-05
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  154 bits (392), Expect = 1e-44
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 298 VANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCN 357
            A+A ST S FHVFY+PRA+ ++FV+PY KY+K + NP  +G RFKMRFE +DS ERR +
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 358 GVVTGITDLDPYRWPNSKWRCLM 380
           G ++G++DLDP RWPNSKWR L 
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 808
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.65
KOG06441113 consensus Uncharacterized conserved protein, conta 99.38
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.19
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.47
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 96.83
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 95.99
cd0599281 PB1 The PB1 domain is a modular domain mediating s 95.6
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 95.37
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 95.3
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 95.24
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 94.6
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 93.44
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 93.06
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 92.24
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 90.94
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 90.4
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 85.68
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 83.84
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=9.9e-36  Score=263.64  Aligned_cols=83  Identities=54%  Similarity=0.997  Sum_probs=81.5

Q ss_pred             HHHHhhcCCeEEEEEcCCCCCCceeeehhHHHHhhccCcccccEEEEEeecCCCCcceeeeEEeeeccCCCCCCCCCCce
Q 003592          298 VANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWR  377 (808)
Q Consensus       298 a~~a~~t~~~F~V~Y~PRas~sEFVVp~~ky~~A~~~~ws~GmRFKM~fE~EDs~~~r~~GTI~gi~d~Dp~rWP~S~WR  377 (808)
                      |+|||+++++|+|+||||++++|||||++||++||+++|++||||||+||+||+++++|+|||+||++.||++||+|+||
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR   80 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR   80 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEE
Q 003592          378 CLM  380 (808)
Q Consensus       378 ~L~  380 (808)
                      |||
T Consensus        81 ~Lq   83 (83)
T PF06507_consen   81 MLQ   83 (83)
T ss_pred             cCc
Confidence            997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 3e-10
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 171 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRG 230
           +F K +T SD        +P+  AE  FP            L  +D++G  WRFR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 231 QPRRHLLTTGWSIFVSQKNLVSGDAVLFLR--GKDGELRLGIR 271
             + ++LT GWS FV +KNL +GD V F R  G+D +L +G +
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK 115

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 3e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  149 bits (376), Expect = 3e-42
 Identities = 41/128 (32%), Positives = 59/128 (46%)

Query: 159 GGGRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLH 218
           G   S  +S   +F K +T SD        +P+  AE  FP            L  +D++
Sbjct: 1   GSSGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVN 60

Query: 219 GVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRN 278
           G  WRFR+ Y    + ++LT GWS FV +KNL +GD V F R    + +L I    +  +
Sbjct: 61  GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 279 GLPDSILS 286
            L  S  S
Sbjct: 121 DLDASGPS 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 808
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 5e-36
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-27
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 4e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  129 bits (326), Expect = 5e-36
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 166 KSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFR 225
           +S   +F K +T SD        +P+  AE  FP            L  +D++G  WRFR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 226 HIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLR--GKDGELRLGIRR 272
           + Y    + ++LT GWS FV +KNL +GD V F R  G+D +L +G + 
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKS 109
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query808
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.93
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.85
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.3
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.26
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 94.27
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=6.9e-26  Score=182.80  Aligned_cols=108  Identities=33%  Similarity=0.543  Sum_probs=101.4

Q ss_pred             CCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf             76049985672569999943670110300299999779999519999648998699999992999712551450111102
Q 003592          168 TPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQ  247 (808)
Q Consensus       168 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fPpLd~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FV~~  247 (808)
                      ...+|.|+||+||+++++||+||+++|+++||+++...+.+++++.+.|.+|++|.|+|+||++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf             76479999111200898889977899997389543456777079999959999999999998899834774577998887


Q ss_pred             CCCCCCCEEEEEEC--CCCCEEEEEEECCC
Q ss_conf             68767987999986--89848996883158
Q 003592          248 KNLVSGDAVLFLRG--KDGELRLGIRRSVQ  275 (808)
Q Consensus       248 K~L~aGD~VvF~R~--~~Gel~vGVRRa~r  275 (808)
                      ++|++||.|+|++.  ++++++|++||+..
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEECCC
T ss_conf             499979999999981899889999999999
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure