Citrus Sinensis ID: 003611

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------
MGSTGEENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR
cccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccHHHHHHccccHHHHHHHcccccccEEEEEEEcccccccccHHHHHcccccccccccccEEccccEEEcccccccccccEEcHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEccccccEEEEEcccccccccccccccEEEEEccccccccccccccEEEEEcccccccEEEEccccccccccEEccccccccccccccccccccEEEEEcEEEcccEEEEEccEEEEEcccEEEEEEEcccccc
ccccccccccccccccccccccEEEEEcccccccccccEcccHHEEHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccccEEccHHHEEEEccccccccccccccccHHccccccHHHcccccccccccccEEEEccEEEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHcEcccccccccccccccccEEEcHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEEccccEEEEEEHHHHHHHHccccccccccEcccEEEEEcccccccccccEEcHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHcccccccHHHHHHcccccccccEEcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccHHHccEEEEEEEEEEEcccccccEEEEEEccccccEEEEEcccccccHHHHcccEEEEEccEccEEEccEEEccEEcEEEcEccccEEEcEcccccccccEcEcccccccccccEcHHHcHHHHHHHHEEEccccEEEEccEEcEEcccEEEEEEEEccccc
mgstgeenpaapppklpipgkrnilitsalpyvnnvphlgNIIGSVLSADVFARFCRlrgynaiyicgtdeygtatetkamedncspkeicdkYHVIHKDVYKWfdisfdnfgrtstpqqTEACQAIFKKLLDnnwlientmqqpycdTCKRFLADrlvegtcpfegcnyesargdqcencgkllnatdlkdpkckvcrnapqirdtnhlflDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRcitrdlkwgvpvplerfkeKVFYVwfdapigyvsITSCYTneweqwwknpenvelyqfmgkdnvpfhtvmfpstllgtgenwTLMKTISVTEYLnyesgkfskskgigvfgndakdtnipVEVWRYYLLtnrpevsdtLFTWADLQAKSNNELLNNLGNFINRVLSFiakppgqgygsivpdangaesHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKlykedqpscsivmRTSVGLVHLLACLlepfmpsfsVEVNKqlnlqpekhislcdekgdvdrarrpweiipaghkigspnplfkelkddEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTkisdgggkkqksakstagakskttaepeiSIARLDIRVGkitkvqkhpdadalyveeidvgevqprTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCastsdntkvelveppksakigervafpgfegepddvlnpkkKVWETVQVDLHTNTELVacykdipfttsagictvssiqsgsir
mgstgeenpaapppklpipgKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLlnatdlkdpkcKVCRnapqirdtnhlfLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKfskskgigvfgndakdtniPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEiipaghkigspnplFKELKDDEVEFFRSkfagsqadRIIRAEAEAAktaeqlkktkisdgggkkqksakstagakskttaepeisiarldirvgkiTKVQKHPDADALYVeeidvgevqprTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCAStsdntkvelveppksakigervafpgfegepddvlnpKKKVWETVQVDLHTNTELVACYKDIpfttsagictvssiqsgsir
MGSTGEENpaapppklpipGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRaeaeaaktaeqlkktkISDgggkkqksakstagakskttaEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR
*********************RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP*********LTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIG****LFKEL***EVEFFR*********************************************************SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCAST********************VAFP********VLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVS********
**********************NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSV**SWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSK*************************************************TAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEP***LNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSG***
***********PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKT*************************EPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVS********
*******************GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQ**RIIRAEAEAAKT**QLK************************TTAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSTGEENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query807 2.2.26 [Sep-21-2011]
Q9ZTS1801 Probable methionine--tRNA yes no 0.973 0.981 0.774 0.0
Q9SVN5797 Probable methionine--tRNA yes no 0.985 0.997 0.771 0.0
Q54X95736 Probable methionine--tRNA yes no 0.900 0.987 0.464 0.0
Q68FL6902 Methionine--tRNA ligase, yes no 0.716 0.640 0.537 0.0
Q2T9L8898 Methionine--tRNA ligase, yes no 0.692 0.622 0.528 0.0
P56192900 Methionine--tRNA ligase, yes no 0.697 0.625 0.534 0.0
Q6PF21905 Methionine--tRNA ligase, N/A no 0.726 0.647 0.512 0.0
Q9UUF2782 Probable methionine--tRNA yes no 0.696 0.718 0.534 0.0
Q73NT9793 Methionine--tRNA ligase O yes no 0.853 0.868 0.438 0.0
Q20970 917 Methionine--tRNA ligase, yes no 0.727 0.640 0.488 1e-177
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2 Back     alignment and function desciption
 Score = 1303 bits (3371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/790 (77%), Positives = 692/790 (87%), Gaps = 4/790 (0%)

Query: 20  GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
           G+RNIL+TSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYN IYICGTDEYGTATETK
Sbjct: 14  GRRNILVTSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNVIYICGTDEYGTATETK 73

Query: 80  AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
           AME+ CSPKEICDKYH +H +VYKWFDI FD FGRTS+PQQTE CQAIF+KL++NNWL E
Sbjct: 74  AMEEKCSPKEICDKYHAVHSEVYKWFDIKFDKFGRTSSPQQTEVCQAIFQKLMENNWLTE 133

Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
           NTMQQ YCDTC+RFLADRLVEG CP EGCNYE+ARGDQCENC KLLN T+L DPKCKVC+
Sbjct: 134 NTMQQLYCDTCQRFLADRLVEGKCPTEGCNYEAARGDQCENCSKLLNPTELIDPKCKVCK 193

Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
           N P++RDT+HLFL+LP L +KL  YIN  SVAG WSQNAIQAT+AWLKEGLK RCITRDL
Sbjct: 194 NTPRVRDTDHLFLELPLLSDKLVNYINETSVAGMWSQNAIQATNAWLKEGLKPRCITRDL 253

Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
           KWGVPVP E++K+KVFYVWFDAPIGYVSIT+ YT +WE+WWK+P+NVEL+QFMGKDNVPF
Sbjct: 254 KWGVPVPHEKYKDKVFYVWFDAPIGYVSITASYTPDWEKWWKDPDNVELFQFMGKDNVPF 313

Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
           HTVMFPSTLLGTGE WT+MKTISVTEYLNYE+GKFSKS GIGVFGNDAKDTNIP EVWRY
Sbjct: 314 HTVMFPSTLLGTGEKWTMMKTISVTEYLNYEAGKFSKSHGIGVFGNDAKDTNIPPEVWRY 373

Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
           YLLTNRPEVSDTLFTWADLQAK N+ELLNNLGNFINRVLSF+AKP G GY SIVPDA  A
Sbjct: 374 YLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFVAKPAGAGYDSIVPDAPNA 433

Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
           ESH LTK L EK  K+VEQYLEAMEKVKLKQGLK+AM ISS+GNAYLQESQFWKLYKED 
Sbjct: 434 ESHPLTKALVEKTNKWVEQYLEAMEKVKLKQGLKSAMGISSDGNAYLQESQFWKLYKEDP 493

Query: 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPW 559
            +C++VM+TSVG+V+LLACLLEPFMPSFS EV  QLN+ PE+ +S CD+KG++ +A+RPW
Sbjct: 494 AACAVVMKTSVGVVYLLACLLEPFMPSFSNEVLLQLNMTPEESLSFCDDKGEIAKAKRPW 553

Query: 560 EIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE--AEAAKTAEQLKKTKI 617
           + + AGHKIG P+PLFKELKD+EVE FR+KFAGSQA+R  +A+  AEA K A++LK TK+
Sbjct: 554 DFVSAGHKIGKPSPLFKELKDEEVESFRNKFAGSQAERSSKAQADAEAKKVADKLKGTKL 613

Query: 618 SDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGE 677
           SDGG KK++  K + G+KSK  AE ++++A+LDIRVG I K QKHPDAD+LYVEEIDVGE
Sbjct: 614 SDGGQKKEQK-KQSGGSKSK-NAEVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGE 671

Query: 678 VQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEP 737
             PRTVVSGLVK IPLEEMQ R VCVLCNLKPVAMRGIKSHAMVL AS  D+TKVELVEP
Sbjct: 672 EAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEP 731

Query: 738 PKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICT 797
           P+SA +GERV F G+ GEP+  LN K K WE +  DLH+N ELVACYKD+PFTTSAG+C 
Sbjct: 732 PESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCK 791

Query: 798 VSSIQSGSIR 807
           V SI SG IR
Sbjct: 792 VKSIASGEIR 801

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1 Back     alignment and function description
>sp|Q54X95|SYMC_DICDI Probable methionine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=metS PE=3 SV=1 Back     alignment and function description
>sp|Q68FL6|SYMC_MOUSE Methionine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Mars PE=2 SV=1 Back     alignment and function description
>sp|Q2T9L8|SYMC_BOVIN Methionine--tRNA ligase, cytoplasmic OS=Bos taurus GN=MARS PE=2 SV=1 Back     alignment and function description
>sp|P56192|SYMC_HUMAN Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2 Back     alignment and function description
>sp|Q6PF21|SYMC_XENLA Methionine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=mars PE=2 SV=1 Back     alignment and function description
>sp|Q9UUF2|SYMC_SCHPO Probable methionine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rar1 PE=3 SV=1 Back     alignment and function description
>sp|Q73NT9|SYM_TREDE Methionine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=metG PE=3 SV=1 Back     alignment and function description
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query807
225433588807 PREDICTED: probable methionyl-tRNA synth 0.982 0.982 0.828 0.0
224129132801 predicted protein [Populus trichocarpa] 0.983 0.991 0.828 0.0
449442335804 PREDICTED: probable methionine--tRNA lig 0.996 1.0 0.806 0.0
225463876804 PREDICTED: probable methionyl-tRNA synth 0.993 0.997 0.781 0.0
224055851805 predicted protein [Populus trichocarpa] 0.980 0.982 0.812 0.0
356543424803 PREDICTED: probable methionyl-tRNA synth 0.982 0.987 0.787 0.0
297800908798 hypothetical protein ARALYDRAFT_493536 [ 0.985 0.996 0.780 0.0
218198281804 hypothetical protein OsI_23153 [Oryza sa 0.973 0.977 0.775 0.0
4091008804 methionyl-tRNA synthetase [Oryza sativa] 0.973 0.977 0.775 0.0
109940177801 RecName: Full=Probable methionine--tRNA 0.973 0.981 0.774 0.0
>gi|225433588|ref|XP_002269672.1| PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1388 bits (3593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/794 (82%), Positives = 718/794 (90%), Gaps = 1/794 (0%)

Query: 14  PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
           PKLPI GKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYICGTDEYG
Sbjct: 15  PKLPIQGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYG 74

Query: 74  TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
           TATETKAME+ C+P++ICDKYH IHK+VYKWF+ISFD FGRTS+PQQTE CQAIFKKL++
Sbjct: 75  TATETKAMEEKCTPQQICDKYHAIHKEVYKWFNISFDEFGRTSSPQQTEVCQAIFKKLME 134

Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
           NNWL EN MQQ YCD C++FLADRLVEG CP + CNY+SARGDQCE CGKLLN  +LKDP
Sbjct: 135 NNWLSENVMQQLYCDKCQKFLADRLVEGICPTQDCNYDSARGDQCEKCGKLLNPIELKDP 194

Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
           +CK C + P IRDTNHLFL+LP L++KLEEYIN MSVAGSWSQNAIQATHAWLKEGLK R
Sbjct: 195 RCKFCHSTPHIRDTNHLFLELPLLKDKLEEYINLMSVAGSWSQNAIQATHAWLKEGLKPR 254

Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
           CITRDLKWGVPVP E+FK+KVFYVWFDAPIGYVSITSCYT +WE+WWKNPENVELYQFMG
Sbjct: 255 CITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPENVELYQFMG 314

Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
           KDNVPFHTVMFPSTLLGT ENWTLMKTISVTEYLNYE+GKFSKSKG+GVFGNDAKDTNIP
Sbjct: 315 KDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIP 374

Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
           VEVWRYYLLTNRPEVSDTLFTW DLQAK N+ELLNNLGNFINRVLSFIAKP G GYGS++
Sbjct: 375 VEVWRYYLLTNRPEVSDTLFTWVDLQAKLNSELLNNLGNFINRVLSFIAKPAGLGYGSVI 434

Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
           PDA GAE HQLTKTLAEKVG++VEQY+EAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK
Sbjct: 435 PDAPGAELHQLTKTLAEKVGRFVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 494

Query: 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
           LYKEDQPSCSIV++TS+GLVHLLACLLEPFMPSFS+EV KQLN+ PE    LCDEKGD++
Sbjct: 495 LYKEDQPSCSIVVKTSLGLVHLLACLLEPFMPSFSLEVLKQLNMPPETSFLLCDEKGDIE 554

Query: 554 RARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLK 613
           RA+RPWEI+PAGH+IG+P PLFKELKD++VEFFR KFAGSQADRI++AEAEA K AEQLK
Sbjct: 555 RAKRPWEIVPAGHRIGTPEPLFKELKDEDVEFFREKFAGSQADRIVKAEAEAKKIAEQLK 614

Query: 614 KTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRVGKITKVQKHPDADALYVEEI 673
           KTK+SDG GKKQ+  KS            EISI+RLDIRVG ITKVQKHPDAD+LYVEEI
Sbjct: 615 KTKVSDGNGKKQRPTKSAEAKPKAAAEA-EISISRLDIRVGLITKVQKHPDADSLYVEEI 673

Query: 674 DVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVE 733
           DVGE   RTVVSGLVK IPLEEMQ R VCVLCNLKP  MRGIKS AMVL AS S++TKVE
Sbjct: 674 DVGEGSTRTVVSGLVKFIPLEEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNSEHTKVE 733

Query: 734 LVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA 793
           LVEPP+SA +GERV FPGFEGEPDDVLNPKKKVWET+QVDL T++ELVA YKD+PFTT+A
Sbjct: 734 LVEPPQSAAVGERVTFPGFEGEPDDVLNPKKKVWETLQVDLRTDSELVALYKDVPFTTTA 793

Query: 794 GICTVSSIQSGSIR 807
           GIC VSSI  GSIR
Sbjct: 794 GICKVSSICDGSIR 807

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129132|ref|XP_002328898.1| predicted protein [Populus trichocarpa] gi|222839328|gb|EEE77665.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442335|ref|XP_004138937.1| PREDICTED: probable methionine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225463876|ref|XP_002268996.1| PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera] gi|296081059|emb|CBI18340.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055851|ref|XP_002298685.1| predicted protein [Populus trichocarpa] gi|222845943|gb|EEE83490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356543424|ref|XP_003540160.1| PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|297800908|ref|XP_002868338.1| hypothetical protein ARALYDRAFT_493536 [Arabidopsis lyrata subsp. lyrata] gi|297314174|gb|EFH44597.1| hypothetical protein ARALYDRAFT_493536 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218198281|gb|EEC80708.1| hypothetical protein OsI_23153 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|4091008|gb|AAC99620.1| methionyl-tRNA synthetase [Oryza sativa] Back     alignment and taxonomy information
>gi|109940177|sp|Q9ZTS1.2|SYM_ORYSJ RecName: Full=Probable methionine--tRNA ligase; AltName: Full=Methionyl-tRNA synthetase; Short=MetRS gi|54290977|dbj|BAD61657.1| methionyl-tRNA synthetase [Oryza sativa Japonica Group] gi|222635658|gb|EEE65790.1| hypothetical protein OsJ_21495 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query807
TAIR|locus:2119515797 AT4G13780 [Arabidopsis thalian 0.970 0.982 0.755 0.0
WB|WBGene00003415 917 mars-1 [Caenorhabditis elegans 0.685 0.603 0.500 1.9e-203
DICTYBASE|DDB_G0279113736 metS "methionyl-tRNA synthetas 0.687 0.754 0.561 1.7e-198
MGI|MGI:1345633902 Mars "methionine-tRNA syntheta 0.690 0.617 0.544 2.9e-174
UNIPROTKB|P56192900 MARS "Methionine--tRNA ligase, 0.691 0.62 0.535 1.8e-172
UNIPROTKB|Q2T9L8898 MARS "Methionine--tRNA ligase, 0.691 0.621 0.531 3e-172
UNIPROTKB|A6NC17635 MARS "Methionine--tRNA ligase, 0.695 0.883 0.530 3e-172
RGD|1305321902 Mars "methionyl-tRNA synthetas 0.691 0.618 0.535 4.9e-172
UNIPROTKB|F1MDW1898 MARS "Methionine--tRNA ligase, 0.691 0.621 0.530 2.7e-171
UNIPROTKB|E2QZ06900 MARS "Uncharacterized protein" 0.691 0.62 0.530 1.2e-170
TAIR|locus:2119515 AT4G13780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3196 (1130.1 bits), Expect = 0., P = 0.
 Identities = 595/788 (75%), Positives = 666/788 (84%)

Query:    20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
             GKRNILITSALPYVNNVPHLGNIIG VLSADV+AR+CRLRGYNAIYICGTDEYGTATETK
Sbjct:    15 GKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNAIYICGTDEYGTATETK 74

Query:    80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
             A+E+NC+PKEICDKYH IHK+VY WF ISFD FGRTSTP+QTE CQAIF KL DN WL E
Sbjct:    75 ALEENCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEVCQAIFNKLWDNKWLSE 134

Query:   140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
             NTMQQ YCDTCK+FLADRLVEG+CPFEGCNY+SARGDQCE CGKLLN T+LKDPKCKVC+
Sbjct:   135 NTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGKLLNPTELKDPKCKVCQ 194

Query:   200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
             N P+IRDT+HLF++LP L+++LE YI   SV GSWSQNAIQ T+AWL++GL+ RCITRDL
Sbjct:   195 NTPRIRDTDHLFIELPLLKDRLEAYIKKTSVTGSWSQNAIQTTNAWLRDGLRQRCITRDL 254

Query:   260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
             KWGVPVP E++K+KVFYVWFDAPIGYVSITSCYT+EWE+WWKNPENVELYQFMGKDNVPF
Sbjct:   255 KWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTSEWEKWWKNPENVELYQFMGKDNVPF 314

Query:   320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
             HTVMFPST LGT ENWTLMKTISVTEYLNYE GKFSKSKG+GVFGND KDTNIPVEVWRY
Sbjct:   315 HTVMFPSTQLGTEENWTLMKTISVTEYLNYEDGKFSKSKGVGVFGNDVKDTNIPVEVWRY 374

Query:   380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
             YLLTNRPEVSDT F+W DLQAK N ELL+NLGNF+NRVLSFIAKP   GYGS++PDA+ A
Sbjct:   375 YLLTNRPEVSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAKPDNAGYGSVIPDAHDA 434

Query:   440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
             ESH LTK+LAEKV K+V +Y+EAMEKVKLKQGLKTAM ISSEGN YLQ SQFWKLYKED+
Sbjct:   435 ESHSLTKSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGNYYLQASQFWKLYKEDK 494

Query:   500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPW 559
             P C++V+RT+ GLVHLLA LLEPFMPSFS EV KQLNL P+   SL DE+G+V  A RPW
Sbjct:   495 PLCAVVIRTAAGLVHLLAQLLEPFMPSFSCEVFKQLNLPPQ--FSLSDERGEVLLASRPW 552

Query:   560 EIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRXXXXXXXXXXXXXXXXISD 619
             +I+P  H+IG+P PLFKEL++DEV  +R KFAGSQ+DR  R                +SD
Sbjct:   553 DILPPSHRIGTPQPLFKELENDEVARYREKFAGSQSDR--RARDEAANLADQLNKTKLSD 610

Query:   620 XXXXXXXXXXXXXXXXXXXXXEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQ 679
                                  + EI++ARLDIRVGKI K +KHP ADALYVEEIDVG  +
Sbjct:   611 AKKQKASSKGGGKPKPQPAA-DREITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGE 669

Query:   680 PRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPK 739
              RTVVSGLVK+IPLEEMQ RMVCVLCNLKP  MR I S AMVL AS+SD +KVELVEPPK
Sbjct:   670 IRTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPK 729

Query:   740 SAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVS 799
             +A IGERV FPGFEGEPDDVLNPKKKVWET+ VDL+T   LVACYKD+PFTTSAG+C VS
Sbjct:   730 TANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVS 789

Query:   800 SIQSGSIR 807
             SI +G+IR
Sbjct:   790 SISNGTIR 797
GO:0000049 "tRNA binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004825 "methionine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006431 "methionyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA;TAS
GO:0046686 "response to cadmium ion" evidence=IEP
WB|WBGene00003415 mars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279113 metS "methionyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1345633 Mars "methionine-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P56192 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2T9L8 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A6NC17 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305321 Mars "methionyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MDW1 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ06 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5JDZ7SYM_PYRKO6, ., 1, ., 1, ., 1, 00.34240.85990.9365yesno
B2RHF5SYM_PORG36, ., 1, ., 1, ., 1, 00.35010.82520.9794yesno
Q5L7I8SYM_BACFN6, ., 1, ., 1, ., 1, 00.34290.82400.9793yesno
O83776SYM_TREPA6, ., 1, ., 1, ., 1, 00.40650.87980.8754yesno
B6YUN0SYM_THEON6, ., 1, ., 1, ., 1, 00.35440.85740.9440yesno
Q8U221SYM_PYRFU6, ., 1, ., 1, ., 1, 00.35680.85620.9544yesno
O58721SYM_PYRHO6, ., 1, ., 1, ., 1, 00.35650.84380.9419yesno
B5RPT6SYM_BORRA6, ., 1, ., 1, ., 1, 00.39110.81280.9035yesno
Q9ZTS1SYM_ORYSJ6, ., 1, ., 1, ., 1, 00.77460.97390.9812yesno
A1R019SYM_BORT96, ., 1, ., 1, ., 1, 00.37120.85500.9504yesno
B7J2F0SYM_BORBZ6, ., 1, ., 1, ., 1, 00.39940.82520.9073yesno
A5FLM7SYM_FLAJ16, ., 1, ., 1, ., 1, 00.33460.83390.9465yesno
Q68FL6SYMC_MOUSE6, ., 1, ., 1, ., 1, 00.53750.71620.6407yesno
Q660T5SYM_BORGA6, ., 1, ., 1, ., 1, 00.39440.81410.9074yesno
Q44951SYM_BORBU6, ., 1, ., 1, ., 1, 00.40080.82520.9073yesno
P56192SYMC_HUMAN6, ., 1, ., 1, ., 1, 00.53410.69760.6255yesno
A6GVQ2SYM_FLAPJ6, ., 1, ., 1, ., 1, 00.34610.82030.9650yesno
Q2T9L8SYMC_BOVIN6, ., 1, ., 1, ., 1, 00.52880.69260.6224yesno
Q0SMS1SYM_BORAP6, ., 1, ., 1, ., 1, 00.39580.81410.9074yesno
Q73NT9SYM_TREDE6, ., 1, ., 1, ., 1, 00.43890.85370.8688yesno
Q64MP7SYM_BACFR6, ., 1, ., 1, ., 1, 00.34430.82400.9793yesno
Q9SVN5SYM_ARATH6, ., 1, ., 1, ., 1, 00.77180.98510.9974yesno
Q54X95SYMC_DICDI6, ., 1, ., 1, ., 1, 00.46450.90080.9877yesno
Q8A3M1SYM_BACTN6, ., 1, ., 1, ., 1, 00.33970.82650.9823yesno
Q9V011SYM_PYRAB6, ., 1, ., 1, ., 1, 00.36180.85620.9570yesno
A6LFP0SYM_PARD86, ., 1, ., 1, ., 1, 00.35560.82770.9837yesno
B5RME0SYM_BORDL6, ., 1, ., 1, ., 1, 00.38410.85130.9462yesno
Q9UUF2SYMC_SCHPO6, ., 1, ., 1, ., 1, 00.53410.69640.7186yesno
A0M5Z9SYM_GRAFK6, ., 1, ., 1, ., 1, 00.35960.81660.9536yesno
Q7MXK7SYM_PORGI6, ., 1, ., 1, ., 1, 00.35010.82520.9794yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.100.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038829001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (807 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00022341001
SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (392 aa)
     •• 0.951
GSVIVG00017439001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (767 aa)
     •• 0.922
GSVIVG00003836001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (765 aa)
     •• 0.922
GSVIVG00001918001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa)
   •••• 0.916
GSVIVG00000520001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (438 aa)
     •• 0.900
GSVIVG00035361001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1090 aa)
     •  0.899
GSVIVG00017573001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (592 aa)
   •  • 0.861
GSVIVG00030361001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (530 aa)
   •••• 0.796
GSVIVG00016648001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (505 aa)
   •••• 0.789
GSVIVG00022843001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)
•  •  • 0.786

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query807
PLN02610801 PLN02610, PLN02610, probable methionyl-tRNA synthe 0.0
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 0.0
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 0.0
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 0.0
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 0.0
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 0.0
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 1e-155
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 1e-108
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 4e-92
cd02799105 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-doma 8e-60
PLN02224616 PLN02224, PLN02224, methionine-tRNA ligase 6e-40
pfam0158895 pfam01588, tRNA_bind, Putative tRNA binding domain 6e-38
cd07957129 cd07957, Anticodon_Ia_Met, Anticodon-binding domai 3e-37
cd0215399 cd02153, tRNA_bindingDomain, The tRNA binding doma 1e-36
cd02800105 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-doma 2e-26
cd02798107 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-conta 8e-25
TIGR00399137 TIGR00399, metG_C_term, methionyl-tRNA synthetase 3e-24
COG0073123 COG0073, ARC1, EMAP domain [General function predi 1e-23
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 1e-19
PRK10089112 PRK10089, PRK10089, tRNA-binding protein; Provisio 2e-16
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 5e-15
TIGR02222107 TIGR02222, chap_CsaA, export-related chaperone pro 1e-08
cd02796103 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain- 8e-08
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 4e-06
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 4e-06
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 9e-06
TIGR00472 797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 1e-05
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 4e-05
TIGR00396842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 5e-05
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 6e-05
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 2e-04
COG0525877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 3e-04
PRK00629 791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 3e-04
COG2517219 COG2517, COG2517, Predicted RNA-binding protein co 3e-04
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 8e-04
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 0.004
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase Back     alignment and domain information 
 Score = 1652 bits (4280), Expect = 0.0
 Identities = 664/802 (82%), Positives = 726/802 (90%), Gaps = 3/802 (0%)

Query: 7   ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYI 66
           E+    PPKLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYI
Sbjct: 2   EDEGKSPPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYI 61

Query: 67  CGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126
           CGTDEYGTATETKA+E+NC+PKEICDKYH IHK+VY WFDISFD FGRTSTPQQTE CQA
Sbjct: 62  CGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQA 121

Query: 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLN 186
           IFKKL++NNWL ENTMQQ YCDTC++FLADRLVEGTCP EGCNY+SARGDQCE CGKLLN
Sbjct: 122 IFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLN 181

Query: 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWL 246
            T+L DPKCKVC+N P+IRDT+HLFL+LP L++KL EYIN  SVAG WSQNAIQ T+AWL
Sbjct: 182 PTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWL 241

Query: 247 KEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENV 306
           ++GLK RCITRDLKWGVPVPLE++K+KVFYVWFDAPIGYVSIT+CYT EWE+WWKNPENV
Sbjct: 242 RDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENV 301

Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
           ELYQFMGKDNVPFHTVMFPSTLLGTGENWT+MKTISVTEYLNYE GKFSKSKG+GVFGND
Sbjct: 302 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGND 361

Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
           AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK N+ELLNNLGNFINRVLSFIAKPPG
Sbjct: 362 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPG 421

Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
            GYGS++PDA GAESH LTK LAEKVGK VEQY+EAMEKVKLKQGLKTAMSISSEGNAYL
Sbjct: 422 AGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYL 481

Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLC 546
           QESQFWKLYKED+PSC+IV++TSVGLV+LLACLLEPFMPSFS EV KQLNL PE  +SL 
Sbjct: 482 QESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLS 540

Query: 547 DEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAA 606
           DEKG+V RA+RPWE++PAGHKIG+P PLFKELKD+EVE +R KFAGSQADR  RAEA  A
Sbjct: 541 DEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAARAEAAEA 600

Query: 607 -KTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRVGKITKVQKHPDA 665
            K A+QLKK  +SDGG KKQ   K+  G KSK  AE EI ++RLDIRVG I K +KHPDA
Sbjct: 601 KKLAKQLKKKALSDGGKKKQGK-KAGGGGKSKAAAEREIDVSRLDIRVGLIVKAEKHPDA 659

Query: 666 DALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCAS 725
           D+LYVEEIDVGE  PRTVVSGLVK+IPLEEMQ R VCVLCNLKP AMRGIKS AMVL AS
Sbjct: 660 DSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAAS 719

Query: 726 TSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYK 785
            SD+TKVELVEPP+SA +GERV FPGFEGEPDDVLNPKKKVWET+Q DLHTN+ELVACYK
Sbjct: 720 NSDHTKVELVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYK 779

Query: 786 DIPFTTSAGICTVSSIQSGSIR 807
           D+PFTTSAG+C V+SI +GSIR
Sbjct: 780 DVPFTTSAGVCKVASIANGSIR 801

Length = 801
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing EMAP2-like proteins Back     alignment and domain information
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase Back     alignment and domain information
>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain Back     alignment and domain information
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins Back     alignment and domain information
>gnl|CDD|239197 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-containing CsaA-like proteins Back     alignment and domain information
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal region/beta chain Back     alignment and domain information
>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|182232 PRK10089, PRK10089, tRNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|131277 TIGR02222, chap_CsaA, export-related chaperone protein CsaA Back     alignment and domain information
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|225315 COG2517, COG2517, Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 807
PLN02610801 probable methionyl-tRNA synthetase 100.0
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 100.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PRK12267648 methionyl-tRNA synthetase; Reviewed 100.0
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
PLN02224616 methionine-tRNA ligase 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 100.0
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PRK149001052 valS valyl-tRNA synthetase; Provisional 100.0
PRK13208800 valS valyl-tRNA synthetase; Reviewed 100.0
PRK05729874 valS valyl-tRNA synthetase; Reviewed 100.0
PLN02943958 aminoacyl-tRNA ligase 100.0
PLN028821159 aminoacyl-tRNA ligase 100.0
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PRK06039975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
COG0525877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
PTZ00419995 valyl-tRNA synthetase-like protein; Provisional 100.0
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
PLN023811066 valyl-tRNA synthetase 100.0
PLN02843974 isoleucyl-tRNA synthetase 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PTZ004271205 isoleucine-tRNA ligase, putative; Provisional 100.0
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
PRK00390805 leuS leucyl-tRNA synthetase; Validated 100.0
PLN02563963 aminoacyl-tRNA ligase 100.0
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 100.0
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
PLN029591084 aminoacyl-tRNA ligase 100.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 100.0
KOG0433937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
KOG0432995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 100.0
KOG04341070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PLN02946557 cysteine-tRNA ligase 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 100.0
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 100.0
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 100.0
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 100.0
PRK12418384 cysteinyl-tRNA synthetase; Provisional 100.0
KOG2241255 consensus tRNA-binding protein [Translation, ribos 100.0
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 100.0
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 100.0
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 100.0
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 100.0
KOG04371080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 100.0
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 100.0
cd00674353 LysRS_core_class_I catalytic core domain of class 100.0
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 100.0
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.97
TIGR02222107 chap_CsaA export-related chaperone CsaA. This mode 99.94
cd02798107 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA 99.94
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.94
PRK10089112 tRNA-binding protein; Provisional 99.94
PRK12451562 arginyl-tRNA synthetase; Reviewed 99.93
cd02799105 tRNA_bind_EMAP-II_like tRNA-binding-domain-contain 99.93
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.91
TIGR00399137 metG_C_term methionyl-tRNA synthetase C-terminal r 99.91
PF0158895 tRNA_bind: Putative tRNA binding domain; InterPro: 99.91
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 99.91
cd02800105 tRNA_bind_EcMetRS_like tRNA-binding-domain-contain 99.91
COG0073123 ARC1 EMAP domain [General function prediction only 99.91
PLN02286576 arginine-tRNA ligase 99.89
cd0215399 tRNA_bindingDomain The tRNA binding domain is also 99.87
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.78
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.77
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 99.75
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.74
cd02796103 tRNA_bind_bactPheRS tRNA-binding-domain-containing 99.72
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 99.65
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.6
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.55
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.52
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.5
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 99.49
TIGR00472 798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 99.43
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.37
PRK00629 791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 99.36
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.33
cd09287240 GluRS_non_core catalytic core domain of non-discri 99.29
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 99.2
COG2517219 Predicted RNA-binding protein containing a C-termi 99.09
KOG4426656 consensus Arginyl-tRNA synthetase [Translation, ri 98.99
PLN03233523 putative glutamate-tRNA ligase; Provisional 98.98
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.97
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.93
PRK05347554 glutaminyl-tRNA synthetase; Provisional 98.88
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 98.88
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 98.87
TIGR02306 341 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me 98.84
PRK14703771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 98.83
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 98.83
PLN02907722 glutamate-tRNA ligase 98.81
PTZ00402601 glutamyl-tRNA synthetase; Provisional 98.79
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.79
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 98.79
PLN02859788 glutamine-tRNA ligase 98.78
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 98.77
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 98.75
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 98.73
cd00808239 GluRS_core catalytic core domain of discriminating 98.69
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 98.64
PLN02627535 glutamyl-tRNA synthetase 98.63
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.46
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 98.29
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 97.91
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 97.86
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 97.74
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 97.64
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 97.46
KOG1147712 consensus Glutamyl-tRNA synthetase [Translation, r 96.95
PF05746119 DALR_1: DALR anticodon binding domain; InterPro: I 95.05
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 94.16
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 93.72
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 93.61
KOG1148764 consensus Glutaminyl-tRNA synthetase [Translation, 93.54
PLN02486383 aminoacyl-tRNA ligase 93.29
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 92.19
PHA02142 366 putative RNA ligase 91.52
smart00836122 DALR_1 DALR anticodon binding domain. This all alp 91.32
PF0919063 DALR_2: DALR domain; InterPro: IPR015273 The amino 90.69
PRK13354410 tyrosyl-tRNA synthetase; Provisional 90.16
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 90.08
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 89.99
PRK08560329 tyrosyl-tRNA synthetase; Validated 89.74
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 89.14
PRK13354410 tyrosyl-tRNA synthetase; Provisional 89.11
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 89.04
COG1656165 Uncharacterized conserved protein [Function unknow 88.96
PLN02886389 aminoacyl-tRNA ligase 88.76
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 88.36
PRK147141337 DNA polymerase II large subunit; Provisional 88.31
PRK05912408 tyrosyl-tRNA synthetase; Validated 87.72
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 87.42
PRK05912408 tyrosyl-tRNA synthetase; Validated 87.05
PF01927147 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T 85.43
smart0084056 DALR_2 This DALR domain is found in cysteinyl-tRNA 84.94
PTZ00385659 lysyl-tRNA synthetase; Provisional 84.83
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 84.38
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 82.57
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 82.17
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 81.97
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 81.78
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 81.43
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 81.08
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 80.58
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 80.36
PRK08560329 tyrosyl-tRNA synthetase; Validated 80.01
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=6.3e-176  Score=1551.40  Aligned_cols=791  Identities=83%  Similarity=1.356  Sum_probs=694.1

Q ss_pred             CCCCCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHH
Q 003611           15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKY   94 (807)
Q Consensus        15 ~~~~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~   94 (807)
                      .+|..|+++||||||+|||||.|||||+++++|.+||++||+||+|++|+|++|||+||+||+.+|+++|++|+++|++|
T Consensus        10 ~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~   89 (801)
T PLN02610         10 KLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKY   89 (801)
T ss_pred             cCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHH
Confidence            56888999999999999999999999999878889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCC
Q 003611           95 HVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR  174 (807)
Q Consensus        95 ~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~  174 (807)
                      ++.|+++|++|||++|.|+||++++|.+.||++|.+|+++|+||++.+++|||++|++||+|++|+|+||..+|++++++
T Consensus        90 ~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~  169 (801)
T PLN02610         90 HAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSAR  169 (801)
T ss_pred             HHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCcccee
Q 003611          175 GDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRC  254 (807)
Q Consensus       175 g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~  254 (807)
                      ||+||.||+.+++.+|++|+|++||+++++++++||||+|++|+++|.+|+++++..+.|+++.++.+.+||++||+|||
T Consensus       170 Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~  249 (801)
T PLN02610        170 GDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRC  249 (801)
T ss_pred             cchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999998776678999999889999999999999


Q ss_pred             eeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCC
Q 003611          255 ITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN  334 (807)
Q Consensus       255 ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~  334 (807)
                      |||++.||||||.+++++||+||||||++||+|++.+|.++|.+||++|.+++++||+||||++||+++|||||||+|++
T Consensus       250 IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~  329 (801)
T PLN02610        250 ITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN  329 (801)
T ss_pred             eeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCC
Confidence            99999999999998888999999999999999998788888999998666888999999999999999999999999998


Q ss_pred             cccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHH
Q 003611          335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI  414 (807)
Q Consensus       335 ~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~  414 (807)
                      |++|++|++||||+++|+|||||+||+|+|.++++..||+|++||||++++|+++|.+|||++|.+++|++|+|+|||++
T Consensus       330 ~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv  409 (801)
T PLN02610        330 WTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFI  409 (801)
T ss_pred             cCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999998339999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003611          415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL  494 (807)
Q Consensus       415 ~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l  494 (807)
                      +|+++|+.+...++++|.+|.....+..+.|+++++.++.+.+++.++|++|+|++|++.|+++++.+|+||+..+||++
T Consensus       410 ~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L  489 (801)
T PLN02610        410 NRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL  489 (801)
T ss_pred             HHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            99999998300016889988643222345688999999999999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCCCCC
Q 003611          495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL  574 (807)
Q Consensus       495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L  574 (807)
                      .+++.+++.+++++++++++.+++||+||||++|++||++||++... .+|.+....+......|..++.|++|+++++|
T Consensus       490 ~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~l  568 (801)
T PLN02610        490 YKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLSDEKGEVARAKRPWELVPAGHKIGTPEPL  568 (801)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCccc-ccchhccccccccccccccCCCCCCCCCCCCC
Confidence            88777778899999999999999999999999999999999986432 12321000010011235556789999999999


Q ss_pred             ccCCChhHHHHHHhhhcCChhhHHHHHHHHH-HHHHHHhhhccccCCCCccccccccccccCCCCCCCCcCCceeeeEEE
Q 003611          575 FKELKDDEVEFFRSKFAGSQADRIIRAEAEA-AKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRV  653 (807)
Q Consensus       575 F~ri~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  653 (807)
                      |+||++++++++.+++.+.+.++.+++++.+ ++.+++.++++ ..+.++++..++++++..+.++....+||++|||||
T Consensus       569 F~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlrV  647 (801)
T PLN02610        569 FKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKA-LSDGGKKKQGKKAGGGGKSKAAAEREIDVSRLDIRV  647 (801)
T ss_pred             CCCCCHHHHHHHHHHhccchhhhhhhhhccccccccccccccc-ccccccccccccccccccccccccccccceeeeeEE
Confidence            9999999998887777654322111111000 00000000000 000000000000000000011112235899999999


Q ss_pred             EEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeeeecCCCCeEE
Q 003611          654 GKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVE  733 (807)
Q Consensus       654 g~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~~~~~~~~~~  733 (807)
                      |+|++|++||+|||||+++||+|++++||||||+++++++|+|+|++|++++||||++|||++|+|||||++++++++++
T Consensus       648 g~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~e~l~G~~Vvv~~nlkp~klrGv~S~GMll~a~~~~~~~~~  727 (801)
T PLN02610        648 GLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNSDHTKVE  727 (801)
T ss_pred             EEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCChHHhCCCEEEEEEEecccccCCcccceeEEecccCCCCceE
Confidence            99999999999999999999999878999999999999999999999999999999999999999999999876655799


Q ss_pred             EEcCCCCCCCCceeecCCCCCCCCCCCCcchhhHHHhccCceECCCeEEEecCeeeEecCCceeecccCCcccC
Q 003611          734 LVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR  807 (807)
Q Consensus       734 ll~~~~~~~~G~~v~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  807 (807)
                      |+.||.++++|++|.|+|++++|++++++|||+|++|+++|+|+++|+|+|+|.+|+|++|+|++++|+||+|+
T Consensus       728 ll~~~~~~~~G~~v~~~~~~~~p~~~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  801 (801)
T PLN02610        728 LVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYKDVPFTTSAGVCKVASIANGSIR  801 (801)
T ss_pred             EEeCCCCCCCCCEEEeCCCCCCcccccCcccchHHHhCCCCEECCceEEEECCEEEEecCCCeEcccCCCCEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996

>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2241 consensus tRNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR02222 chap_CsaA export-related chaperone CsaA Back     alignment and domain information
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK10089 tRNA-binding protein; Provisional Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain Back     alignment and domain information
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins Back     alignment and domain information
>COG0073 ARC1 EMAP domain [General function prediction only] Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information
>smart00836 DALR_1 DALR anticodon binding domain Back     alignment and domain information
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>COG1656 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK14714 DNA polymerase II large subunit; Provisional Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function Back     alignment and domain information
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query807
1rqg_A722 Methionyl-Trna Synthetase From Pyrococcus Abyssi Le 1e-131
1f4l_A551 Crystal Structure Of The E.Coli Methionyl-Trna Synt 3e-59
1p7p_A551 Methionyl-trna Synthetase From Escherichia Coli Com 3e-59
3h9c_A547 Structure Of Methionyl-Trna Synthetase: Crystal For 3e-59
1qqt_A551 Methionyl-Trna Synthetase From Escherichia Coli Len 3e-58
3h97_A560 Structure Of A Mutant Methionyl-trna Synthetase Wit 3e-56
1e7z_A174 Crystal Structure Of The Emap2RNA BINDING DOMAIN OF 2e-51
1euj_A166 A Novel Anti-Tumor Cytokine Contains A Rna-Binding 2e-51
1fl0_A171 Crystal Structure Of The Emap2RNA-Binding Domain Of 2e-51
1ntg_A172 Crystal Structure Of The Emap Ii-Like Cytokine Rele 2e-43
2csx_A497 Crystal Structure Of Aquifex Aeolicus Methionyl-Trn 3e-42
1a8h_A500 Methionyl-Trna Synthetase From Thermus Thermophilus 2e-36
2x1l_A524 Crystal Structure Of Mycobacterium Smegmatis Methio 4e-36
1woy_A500 Crystal Structure Of Methionyl Trna Synthetase Y225 6e-36
2d54_A502 Crystal Structure Of Methionyl Trna Synthetase Y225 2e-35
4dlp_A536 Crystal Structure Of Methionyl-Trna Synthetase Metr 8e-33
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 2e-26
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 3e-26
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 3e-26
3kfl_A564 Leishmania Major Methionyl-Trna Synthetase In Compl 5e-24
1mkh_A107 C-Terminal Domain Of Methionyl-Trna Synthetase From 2e-18
3ers_X118 Crystal Structure Of E. Coli Trbp111 Length = 118 2e-17
2cwp_A112 Crystal Structure Of Metrs Related Protein From Pyr 4e-08
1pyb_A111 Crystal Structure Of Aquifex Aeolicus Trbp111: A St 4e-08
2v0c_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 2e-07
1obh_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 2e-07
1wz2_A 967 The Crystal Structure Of Leucyl-Trna Synthetase And 3e-04
1wkb_A810 Crystal Structure Of Leucyl-Trna Synthetase From Th 4e-04
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 Back     alignment and structure 
Iteration: 1

 Score =  466 bits (1199), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 266/749 (35%), Positives = 398/749 (53%), Gaps = 58/749 (7%)
Query: 25  LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
           ++TSALPY N   H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT    +A+++ 
Sbjct: 5   MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEG 64
Query: 85  CSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQ 144
            SP+EI D++H   K  ++   ISFD FGRT  P   +  Q  F K  +N  L++   +Q
Sbjct: 65  RSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQ 124
Query: 145 PYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
            YC+  K FL DR V GTCP+  C  E  +GDQCE CG+ L    L +P+C +C      
Sbjct: 125 AYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISF 182
Query: 205 RDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVP 264
           RD+ H ++ +     +L+ +I        W  N      +W++EGL+ R ITRDL WG+P
Sbjct: 183 RDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGIP 238
Query: 265 VPL--ERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPE-NVELYQFMGKD 315
           VPL  E  K KV YVWF+APIGY+SIT  +       NEW+++W N +    +  F+GKD
Sbjct: 239 VPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKD 298
Query: 316 NVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDA 367
           N+PFH + +P+ L+  G+         W L   I   EYL  E  KFS S+   ++ ++ 
Sbjct: 299 NIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEF 358
Query: 368 KDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427
            D   P +  RYYL T  PE  D+ F+++D + + N EL+NNLGNF++R L+F+     +
Sbjct: 359 LDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFV----NR 413
Query: 428 GYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487
            +  +VP+    E  +L +   E++ K  ++  E +   + K  LK  MS++S GN Y  
Sbjct: 414 YFDGVVPER--GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFD 471
Query: 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCD 547
             Q WK  KED+      +  S+ +V  L  LLEPF+P  S ++   LNL          
Sbjct: 472 HKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL---------- 521
Query: 548 EKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGS---QADRIIRXX 602
                D  +R WE   +PAGHK+  P  LFK++ DD++ +F   +      +  RI+   
Sbjct: 522 -----DEVKR-WEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDK 575
Query: 603 XXXXXXXXXXXXXXISDXXXXXXXXXXXXXXXXXXXXXEPEI----SIARLDIRVGKITK 658
                           D                     +         A+LD+RVGKI +
Sbjct: 576 YYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGKEMYVKFDDFAKLDLRVGKIIE 635
Query: 659 VQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSH 718
           V+ HP+AD LYV ++D+G+ + RT+V+GL K+   EE+  R V V+ NL+P  +RGI S 
Sbjct: 636 VKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ 694
Query: 719 AMVLCASTSDNTKVELVEPPKSAKIGERV 747
            M+L A   D  +V L+ P K  K+G +V
Sbjct: 695 GMLLAA--DDGERVALLMPDKEVKLGAKV 721
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 Back     alignment and structure
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 Back     alignment and structure
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 Back     alignment and structure
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 Back     alignment and structure
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 Back     alignment and structure
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174 Back     alignment and structure
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166 Back     alignment and structure
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171 Back     alignment and structure
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released From Human Tyrosyl-Trna Synthetase Length = 172 Back     alignment and structure
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 Back     alignment and structure
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 Back     alignment and structure
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 Back     alignment and structure
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 Back     alignment and structure
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 107 Back     alignment and structure
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111 Length = 118 Back     alignment and structure
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus Horikoshii Length = 112 Back     alignment and structure
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture- Specific Trna Binding Protein Length = 111 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query807
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 0.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 0.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 4e-97
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 1e-94
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 8e-93
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 9e-93
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 3e-91
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 7e-87
1fl0_A171 Endothelial-monocyte activating polypeptide II; RN 2e-83
1ntg_A172 Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas 1e-81
1pxf_A111 Hypothetical protein YGJH; oligonucleotide-oligosa 1e-42
1mkh_A107 Metrs;, C-terminal domain of methionyl-tRNA synthe 3e-37
1pyb_A111 Methionyl-tRNA synthetase beta subunit; oligonucle 4e-29
2cwp_A112 Metrs related protein; structural GEN riken struct 7e-29
3g48_A112 Chaperone CSAA; structural genomics, niaid structu 2e-27
2q2h_A131 AGR_C_4014P, secretion chaperone, phage-display de 1e-26
1gd7_A109 CSAA protein; oligonucleotide-binding fold, functi 4e-26
2q2i_A116 AGR_C_4014P, secretion chaperone; beta barrel, OB 4e-25
2nzh_A113 Protein CSAA; beta barrel, oligonucleotide/oligosa 7e-25
2e8g_A241 Hypothetical protein PH0536; oligonucleotide/oligo 6e-20
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 4e-11
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 9e-08
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 1e-07
3bu2_A199 Putative tRNA-binding protein; structural genomics 2e-05
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 4e-05
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
 Score =  943 bits (2439), Expect = 0.0
 Identities = 264/752 (35%), Positives = 401/752 (53%), Gaps = 58/752 (7%)

Query: 22  RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
              ++TSALPY N   H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT    +A+
Sbjct: 2   VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61

Query: 82  EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
           ++  SP+EI D++H   K  ++   ISFD FGRT  P   +  Q  F K  +N  L++  
Sbjct: 62  KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKV 121

Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
            +Q YC+  K FL DR V GTCP+  C  E  +GDQCE CG+ L    L +P+C +C   
Sbjct: 122 TKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179

Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
              RD+ H ++ +     +L+ +I        W  N      +W++EGL+ R ITRDL W
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEK----QPWKPNVKNMVLSWIEEGLEERAITRDLNW 235

Query: 262 GVPVPLER--FKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPE-NVELYQFM 312
           G+PVPL+    K KV YVWF+APIGY+SIT  +       NEW+++W N +    +  F+
Sbjct: 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI 295

Query: 313 GKDNVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364
           GKDN+PFH + +P+ L+  G+         W L   I   EYL  E  KFS S+   ++ 
Sbjct: 296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 355

Query: 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
           ++  D   P +  RYYL T  PE  D+ F+++D + + N EL+NNLGNF++R L+F+ + 
Sbjct: 356 HEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRY 414

Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
               +  +VP+    E  +L +   E++ K  ++  E +   + K  LK  MS++S GN 
Sbjct: 415 ----FDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468

Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
           Y    Q WK  KED+      +  S+ +V  L  LLEPF+P  S ++   LNL   K   
Sbjct: 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKR-- 526

Query: 545 LCDEKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE 602
                         WE   +PAGHK+  P  LFK++ DD++ +F   +         R  
Sbjct: 527 --------------WEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARIL 572

Query: 603 AEAAKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTA----EPEISI---ARLDIRVGK 655
            +     E + +      G + +   +               E  +     A+LD+RVGK
Sbjct: 573 LDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGKEMYVKFDDFAKLDLRVGK 632

Query: 656 ITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGI 715
           I +V+ HP+AD LYV ++D+G+ + RT+V+GL K+   EE+  R V V+ NL+P  +RGI
Sbjct: 633 IIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGI 691

Query: 716 KSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
            S  M+L A   +  +V L+ P K  K+G +V
Sbjct: 692 GSQGMLLAADDGE--RVALLMPDKEVKLGAKV 721
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171 Back     alignment and structure
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172 Back     alignment and structure
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} SCOP: b.40.4.4 PDB: 3ers_X Length = 111 Back     alignment and structure
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Length = 107 Back     alignment and structure
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Length = 111 Back     alignment and structure
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Length = 112 Back     alignment and structure
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} Length = 112 Back     alignment and structure
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Length = 131 Back     alignment and structure
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Length = 109 Back     alignment and structure
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Length = 116 Back     alignment and structure
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Length = 113 Back     alignment and structure
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Length = 241 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Length = 199 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 807
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 1e-71
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 3e-66
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 3e-51
d1ntga_171 b.40.4.4 (A:) C-terminal domain of metazoan tyrosy 7e-51
d1fl0a_164 b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId 7e-49
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 8e-39
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 1e-38
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 2e-29
d1pxfa_111 b.40.4.4 (A:) Structure-specific tRNA-binding prot 5e-26
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 8e-26
d1pyba_107 b.40.4.4 (A:) Structure-specific tRNA-binding prot 1e-24
d1mkha_107 b.40.4.4 (A:) C-terminal domain of methionyl-tRNA 2e-24
d1rqga1210 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me 2e-22
d2d5ba1152 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me 7e-22
d1gd7a_109 b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermo 7e-20
d1pfva1162 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (Me 1e-18
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 8e-16
d1rqga335 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (Me 9e-15
d1pfva335 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (Me 4e-12
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 1e-09
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 3e-04
d1jjcb3113 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT 1e-08
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

 Score =  236 bits (603), Expect = 1e-71
 Identities = 101/394 (25%), Positives = 172/394 (43%), Gaps = 53/394 (13%)

Query: 22  RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
           + IL+T ALPY N   HLG+++  +  ADV+ R+ R+RG+   +IC  D +GT    KA 
Sbjct: 2   KKILVTCALPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60

Query: 82  EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
           +   +P+++  +    H+  +  F+IS+DN+  T + +  +  + I+ +L +N ++   T
Sbjct: 61  QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120

Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
           + Q Y      FL DR V                                     V    
Sbjct: 121 ISQLYDPEKGMFLPDRFV-------------------------------------VSGAT 143

Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
           P +RD+ H F DLP+    L+ +  +    G+  +        W + GL+   I+RD  +
Sbjct: 144 PVMRDSEHFFFDLPSFSEMLQAWTRS----GALQEQVANKMQEWFESGLQQWDISRDAPY 199

Query: 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGKD 315
                +     K FYVW DAPIGY+       ++      ++++WK     ELY F+GKD
Sbjct: 200 -FGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKD 258

Query: 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVE 375
            V FH++ +P+ L G+         + V  Y+     K SKS+G  +  +   +     +
Sbjct: 259 IVYFHSLFWPAMLEGSNFRK--PSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDAD 315

Query: 376 VWRYYLLTN-RPEVSDTLFTWADLQAKSNNELLN 408
             RYY        + D      D   + N +++N
Sbjct: 316 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 349
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Length = 111 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Length = 107 Back     information, alignment and structure
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 107 Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Length = 109 Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Length = 35 Back     information, alignment and structure
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Length = 35 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query807
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 100.0
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 100.0
d1fl0a_164 EMAP II {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ntga_171 C-terminal domain of metazoan tyrosyl-tRNA synthet 100.0
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.96
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.96
d1pxfa_111 Structure-specific tRNA-binding protein TRBP111 {E 99.94
d1pyba_107 Structure-specific tRNA-binding protein TRBP111 {A 99.94
d1mkha_107 C-terminal domain of methionyl-tRNA synthetase, Me 99.94
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.93
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.92
d1gd7a_109 TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 99.92
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.82
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.8
d1jjcb3113 Domain B2 of PheRS-beta, PheT {Thermus thermophilu 99.62
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 99.36
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.35
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.31
d1ffya1273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.27
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.12
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.86
d1rqga335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro 98.47
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.45
d1pfva335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch 98.28
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 95.02
d1f7ua1124 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 94.04
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 93.88
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 93.77
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 93.13
d1iq0a1126 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 92.18
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 92.15
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 90.16
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 89.57
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 85.92
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 85.36
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 84.8
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 81.24
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=536.26  Aligned_cols=342  Identities=30%  Similarity=0.583  Sum_probs=309.6

Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99299990899999924231763453599999999998899155744963150799999998199999999999999999
Q 003611           21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD  100 (807)
Q Consensus        21 ~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~~~  100 (807)
                      .|+|+||+|+|||||+|||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++++++++++...|.+
T Consensus         1 ~~~~~i~~~~P~~nG~lHiGHar~-~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~   79 (350)
T d1pfva2           1 AKKILVTCALPYANGSIHLGHMLE-HIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQT   79 (350)
T ss_dssp             CCEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             981899599988989700001388-9999999999994599668447548762999999998398999988767888999


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf             99654832343457898668999999999898679756400454103898953355401344789877777877830000
Q 003611          101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN  180 (807)
Q Consensus       101 ~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~gd~ce~  180 (807)
                      +++.|+|+++.++.|.++.|.+.+++++.+|.++|++|++.+.++||+.|++|++|+++.                    
T Consensus        80 ~~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~~--------------------  139 (350)
T d1pfva2          80 DFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVV--------------------  139 (350)
T ss_dssp             HHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGTT--------------------
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEEECCCCEECCCCEEC--------------------
T ss_conf             998769876668776785421678888777765160120261598867778684784312--------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             48877754467984566899509954066558260039999999980878998885799999999872866401110258
Q 003611          181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK  260 (807)
Q Consensus       181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~  260 (807)
                                       ||.+++.+.++||||+|+++++.|.++++..    .|+++..+....++.+++.+||+||+..
T Consensus       140 -----------------~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~~  198 (350)
T d1pfva2         140 -----------------SGATPVMRDSEHFFFDLPSFSEMLQAWTRSG----ALQEQVANKMQEWFESGLQQWDISRDAP  198 (350)
T ss_dssp             -----------------TCCCCEEEEEEEEEECGGGGHHHHHHHHTTS----CSCHHHHHHHHHHHHHCCCCEECEEESS
T ss_pred             -----------------CCCCCCCEECCHHEEEHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             -----------------5897541122221222688999999876538----8861257799887650677665554224


Q ss_pred             -CCCCCCCCCCCCCEEEEEECCCCHHHHCCCCC------CHHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHCCC
Q ss_conf             -89744754568967999861552011203689------43676411899985149999721554003159897320799
Q 003611          261 -WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE  333 (807)
Q Consensus       261 -WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~------~~~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~pa~l~a~~~  333 (807)
                       ||+++|.+  ++.++|+|++++..|++....+      ...+..+|......+++|+.|+|+++||+.++++++++.+.
T Consensus       199 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~  276 (350)
T d1pfva2         199 YFGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNF  276 (350)
T ss_dssp             CSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB
T ss_pred             CCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             588454577--775533225443002444303555323201112104567886202104604677777667777531477


Q ss_pred             CCCCCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             845670899611031489844324687559355541299942588998714998-7785434999998886899999
Q 003611          334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNN  409 (807)
Q Consensus       334 ~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~-~~D~~Fs~~~l~~~~n~~l~~~  409 (807)
                        .++.++++|||++++|+|||||+||+|++.|+++ .||+|++||||++..+. .+|++||++.|.+++|++|+|+
T Consensus       277 --~~~~~~~~~g~l~~~G~KMSKS~GN~i~~~dll~-~~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N~~~~n~  350 (350)
T d1pfva2         277 --RKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK  350 (350)
T ss_dssp             --CCCSEEEEECCEEETTBSCCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCC
T ss_pred             --CCCCEEEECCCEEECCEECCCCCCCCCCHHHHHH-HCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             --7424697513188788176673898778999998-7898999999984189988888889999999987870289
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure