Citrus Sinensis ID: 003743

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------80
MVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA
cccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccEEEcccEEEEEEEEcccccccccccccccccccccHHcccccccEEEEEccccccccccccccHHHHHHHHccccccHHHHHHHcccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccEEEEccccHHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccc
cccccccEEEEcccHHHHHcccEEcccccccccccccccccEEEccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccEEEEEEEcccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHccccccccccccccccccEEEcHHHHHHHHcccccccccccccccEcccccccccccccHHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEcccEEcccHHHHHHHHcHcHHHHHHHHHHHHHcccEEEEEEcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccHHHcccccccEEEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHccccHccHHHHHHHHHHccccccHHHEEEEEEcccccHcccccHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEccHHHHHHHHcHcHHHHHHHHHHHHHcccEEEEEccHHHHccccccccccHHHHHHHHHHHHHccHHccccEEEEEEccccccccHHHcccccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccHccccccccc
mvslspchfkMLEKDKAFGigleldnknhKTKKMLEktssgiymddgdlsaEDDIIAAlssepsskedEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEvkgyksgtygkvpascngalenkTKARELRTEIFCVLTfseeslhggknnaYELTLEARGQQNNNTEAVRQLFGklnsgdsvsfYTVKergstqgfdsnvsslswmgtTASDVINRIKVLlspdsglwfstyhlplpghilihgppgsgktSLAKAVAKSLEHHKDLVAHIVFVCCsrlslekgpIIRQALSNFISEaldhapsivifdnldsiissssdpegsqpstsVIALTKFLVDIMDEYGekrksscgigpIAFVASAQslekipqsltssgrfdfhvqlpapaaSERKAILEHEIQRRSLECSDEILLDVaskcdgydaydlEILVDRTVHAAVGrylhsdssfekhikptlvrddFSQAMHEFLPVAMRDItktsaeggrsgwddvggLTDIQNAIKEMIelpskfpnifaqaplrlrsnvllygppgcgkthIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATaaapcllffdefdsiapkrghdntgvTDRVVNQFLTELDGVEVLTGVFVFAatsrpdlldaallrpgrldrllfcdfpsprerLDILKVISrklpladdvdLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNnidsnepgkmpvITDALLKSIAskarpsvseaeKLRLYSIYGqfldskksvAAQSrdakgkratla
mvslspchFKMLEKDKAfgigleldnknhkTKKMLEKTSSGIYMDDGDLSAEDDIIAALssepsskedEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGyksgtygkvpascNGALENKTKARELRTEIFCVLtfseeslhggkNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKergstqgfdsnvssLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSssdpegsqpstSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRylhsdssfekhikptLVRDDFSQAMHEFLPVAMRDITKTSaeggrsgwddvGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLfcdfpspreRLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILnnidsnepgkMPVITDALLKSIASkarpsvseaekLRLYSIYGqfldskksvaaqsrdakgkratla
MVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLdsiissssdpegsqpstsVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGadlqallsdaqlsaVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA
***************KAFGIGL*************************************************VYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELT***************QLFGKLNSGDSVSFYTVK*******FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGP*******LAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIF*********************VIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ**************FDFHVQ**********AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNI*********VITDALL***************KLRLYSIYGQFL*********************
**S*S*******************************************LSAEDDIIA************************ECLLHTWLLAQLTAV**********LVLSNETLLH****************************RELRTEIFCVLTFSEESLHGGKNNAY***************************************************SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS************ALSNFISEALDHAPSIVIFDNLDSI******************LTKFLVDIMDEYGE****SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV****************TLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS****************VNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILN**********PVITDALLKSIAS*******************************************
MVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSS***********YQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPP************KSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS***********TSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIA********EAEKLRLYSIYGQFLDSK******************
*VSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSE********AVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSG***********GSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS****GSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR**DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS*******************
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MVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query799 2.2.26 [Sep-21-2011]
Q9FNP11130 Peroxisome biogenesis pro yes no 0.983 0.695 0.642 0.0
O43933 1283 Peroxisome biogenesis fac yes no 0.576 0.359 0.455 1e-107
Q5BL07 1284 Peroxisome biogenesis fac yes no 0.570 0.355 0.442 1e-101
Q54GX51227 Peroxisome biogenesis fac yes no 0.593 0.386 0.407 1e-100
P464631157 Peroxisome biosynthesis p yes no 0.583 0.402 0.388 2e-98
P240041043 Peroxisomal ATPase PEX1 O yes no 0.625 0.479 0.366 3e-88
O05209745 VCP-like ATPase OS=Thermo yes no 0.629 0.675 0.365 3e-85
O28972733 Cell division cycle prote yes no 0.610 0.665 0.358 4e-85
O74941937 Peroxisomal ATPase pex1 O yes no 0.581 0.496 0.358 7e-85
Q58556 903 Cell division cycle prote yes no 0.568 0.502 0.374 2e-83
>sp|Q9FNP1|PEX1_ARATH Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=2 Back     alignment and function desciption
 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/799 (64%), Positives = 615/799 (76%), Gaps = 13/799 (1%)

Query: 2    VSLSPCHFKMLEKDKAFGIGLE-LDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALS 60
            +SLSPC FK+ E +K    G + L N N   K     +    Y+D  D S  D ++ ALS
Sbjct: 344  LSLSPCVFKISENEKVLDKGTDRLGNNNSVRKSSHPPSGLSTYVDVVDWSVHDKVVTALS 403

Query: 61   SEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVK 120
            SE    E        +NKKGLE L   W LAQL A+AS  G + ++L++  ET  HFEV+
Sbjct: 404  SEGLHDEGNHD----KNKKGLEYLTRLWSLAQLDAMASVTGVDVSSLIVGRETFFHFEVR 459

Query: 121  GYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQ 180
            G +S        S N   E+  K +    EI  V+T S+ESL G K   Y+L+L+ R ++
Sbjct: 460  GLESYKSIDGQPSVNDRWESGKKDKHTPLEILYVMTVSDESLLGDKFAGYDLSLD-RSEK 518

Query: 181  NNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKVLLS 240
            ++N   +  +  K+N G+ +   + KE    +G   ++SSL+WMG   SDVI R+ VLLS
Sbjct: 519  SDNVVHIEPVLEKMNLGEPIYLKSAKETHCNKGVSPDISSLTWMGPIVSDVIKRMTVLLS 578

Query: 241  PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 300
            P +G+WFS + +P PGHILI+GPPGSGKT LA+A AK  E  KDL+AH++ V CS L+LE
Sbjct: 579  PAAGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALE 638

Query: 301  KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 360
            K   I   LS+ I+E L+HAPS++I D+LDSIISSSSD EG+Q S  V  LTKFL D++D
Sbjct: 639  KVQHIHHVLSSVIAEGLEHAPSVIILDDLDSIISSSSDTEGTQASVGVTMLTKFLTDVID 698

Query: 361  EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 420
            +YGE R SSCGIGP+AFVAS QSLE+IPQ+L+SSGRFDFHVQL APA SER AIL+HEIQ
Sbjct: 699  DYGEYRNSSCGIGPLAFVASVQSLEQIPQTLSSSGRFDFHVQLAAPATSERGAILKHEIQ 758

Query: 421  RRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDD 480
            +R L+CS++ILL++A+KC+GYDAYDLEILVDR VHAA+GR+L  +S+  K+    LV++D
Sbjct: 759  KRLLDCSEDILLNLAAKCEGYDAYDLEILVDRAVHAAIGRHLPLESNISKY---NLVKED 815

Query: 481  FSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL 540
            F++AMH+F+PVAMRDITK+++EGGR GW+DVGG+TDI+NAIKEMIELPSKFP IFA++PL
Sbjct: 816  FTRAMHDFVPVAMRDITKSASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPL 875

Query: 541  RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATA 600
            RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA A
Sbjct: 876  RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAA 935

Query: 601  AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 660
            AAPC+LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 
Sbjct: 936  AAPCILFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDP 995

Query: 661  ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALL 720
            ALLRPGRLDRLL CDFPSP ERL+IL V+SRKL +ADD+DLE IA MTEGFSGADLQALL
Sbjct: 996  ALLRPGRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGFSGADLQALL 1055

Query: 721  SDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 780
            SDAQL+AVHE LN  D  E G  P+ITD LLKSIASK +PSVSE EK +LY IY QFLDS
Sbjct: 1056 SDAQLAAVHEYLNREDKPETGTTPIITDPLLKSIASKTKPSVSETEKQKLYDIYSQFLDS 1115

Query: 781  KKSVAAQSRDAKGKRATLA 799
            +KS    SR+AKGKRATLA
Sbjct: 1116 RKS----SREAKGKRATLA 1130
Involved in PTS1- and PTS2-dependent protein import into peroxisomes. May form heteromeric AAA ATPase complexes required for the import of proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1 Back     alignment and function description
>sp|Q5BL07|PEX1_MOUSE Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2 Back     alignment and function description
>sp|Q54GX5|PEX1_DICDI Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1 Back     alignment and function description
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris GN=PEX1 PE=3 SV=1 Back     alignment and function description
>sp|P24004|PEX1_YEAST Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX1 PE=1 SV=2 Back     alignment and function description
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat PE=1 SV=1 Back     alignment and function description
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1 Back     alignment and function description
>sp|O74941|PEX1_SCHPO Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pex1 PE=3 SV=1 Back     alignment and function description
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query799
225465133 1134 PREDICTED: peroxisome biogenesis protein 0.998 0.703 0.738 0.0
255553055 1137 peroxisome biogenesis factor, putative [ 0.993 0.698 0.739 0.0
302143245 1114 unnamed protein product [Vitis vinifera] 0.973 0.698 0.729 0.0
356521604 1130 PREDICTED: peroxisome biogenesis protein 0.987 0.698 0.678 0.0
449487682 1123 PREDICTED: peroxisome biogenesis protein 0.984 0.700 0.657 0.0
297806891 1122 peroxisome biogenesis protein PEX1 [Arab 0.987 0.703 0.647 0.0
12006272 1119 peroxisome biogenesis protein PEX1 [Arab 0.983 0.702 0.642 0.0
30682405 1130 peroxisome 1 [Arabidopsis thaliana] gi|3 0.983 0.695 0.642 0.0
9759341 1125 unnamed protein product [Arabidopsis tha 0.974 0.692 0.639 0.0
297806913642 hypothetical protein ARALYDRAFT_908820 [ 0.627 0.780 0.773 0.0
>gi|225465133|ref|XP_002273767.1| PREDICTED: peroxisome biogenesis protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1196 bits (3094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/802 (73%), Positives = 681/802 (84%), Gaps = 4/802 (0%)

Query: 1    MVSLSPCHFKMLEKDKAFG-IGLE-LDN-KNHKTKKMLEKTSSGIYMDDGDLSAEDDIIA 57
            ++SLSPC FKM EK+KA    GLE LD+  NHKTK ML +T+S  YM+  D S  ++  A
Sbjct: 334  LLSLSPCQFKMFEKNKALEENGLEVLDSLTNHKTKSMLLETNSDTYMNISDWSTHEEFAA 393

Query: 58   ALSSEPSSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHF 117
            ALS E    EDE+   Q  ++KGL+ LL  W LA L A+ SN G+E ++LV+ NETLLHF
Sbjct: 394  ALSFESPGSEDEKTSSQSGSRKGLQSLLQAWFLAHLDAINSNAGTEIDSLVVGNETLLHF 453

Query: 118  EVKGYKSGTYGKVPASCNGALENKTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEAR 177
             V   K GT GK  AS NG+ +N++   +L  EI  +L  SEES H GK NAYEL+   R
Sbjct: 454  NVTSDKFGTLGKFQASSNGSSKNRSSYGDLSVEILYILAISEESQHSGKFNAYELSFPER 513

Query: 178  GQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSWMGTTASDVINRIKV 237
             ++NNN   +  L G L  G+ VSFY +KER S +GF    SSLSW+GT ASD+INR+  
Sbjct: 514  NKRNNNLGNLELLVGNLRLGEPVSFYCMKERTSAKGFSLTASSLSWIGTAASDIINRLTT 573

Query: 238  LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 297
            LLSP SG+WFSTY+LPLPGH+LI+GPPGSGKT LA+ VAK+LE  +DL+ HIVFV CS+L
Sbjct: 574  LLSPASGMWFSTYNLPLPGHVLIYGPPGSGKTLLARTVAKALEEQEDLLTHIVFVSCSQL 633

Query: 298  SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 357
            +LEK   IRQALS+++S+ALDH PS+VIFD+LD IISSSSD EGSQPSTSV ALT++L D
Sbjct: 634  ALEKAVTIRQALSSYLSDALDHVPSLVIFDDLDLIISSSSDLEGSQPSTSVTALTEYLTD 693

Query: 358  IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 417
            I+DEYGEKRK+SCGIGP+AF+ASAQSLE +PQSL+SSGRFDFHVQLPAPAA+ER AIL+H
Sbjct: 694  ILDEYGEKRKNSCGIGPLAFIASAQSLENVPQSLSSSGRFDFHVQLPAPAATERMAILKH 753

Query: 418  EIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLV 477
            EIQ+RSL+C+D+IL DVASKCDGYDAYDLEILVDRT+HAA+GR+  S+S+F+K  KPTLV
Sbjct: 754  EIQKRSLQCADDILSDVASKCDGYDAYDLEILVDRTIHAAIGRFFPSNSAFDKSEKPTLV 813

Query: 478  RDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 537
            RDDFSQAMHEFLPVAMRDITK+++EGGRSGW+DVGGL DI+NAIKEMIELPSKFP+IFAQ
Sbjct: 814  RDDFSQAMHEFLPVAMRDITKSASEGGRSGWEDVGGLVDIRNAIKEMIELPSKFPSIFAQ 873

Query: 538  APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSK 597
            +PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIF K
Sbjct: 874  SPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFLK 933

Query: 598  ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 657
            A+AA+PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL
Sbjct: 934  ASAASPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 993

Query: 658  LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQ 717
            LDAALLRPGRLDRLLFCDFPS RERLDIL V+SRKLPLADDV ++AIA+MTEGFSGADLQ
Sbjct: 994  LDAALLRPGRLDRLLFCDFPSRRERLDILTVLSRKLPLADDVAMDAIAYMTEGFSGADLQ 1053

Query: 718  ALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQF 777
            ALLSDAQL+AVHE+L   D+ EPGKMPVITDALLKS+ASKARPSVS+AEK RLY+IY QF
Sbjct: 1054 ALLSDAQLAAVHEVLATADNKEPGKMPVITDALLKSVASKARPSVSDAEKERLYTIYNQF 1113

Query: 778  LDSKKSVAAQSRDAKGKRATLA 799
            LDSKKS  AQSRDAKGKRATLA
Sbjct: 1114 LDSKKST-AQSRDAKGKRATLA 1134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255553055|ref|XP_002517570.1| peroxisome biogenesis factor, putative [Ricinus communis] gi|223543202|gb|EEF44734.1| peroxisome biogenesis factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302143245|emb|CBI20540.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521604|ref|XP_003529444.1| PREDICTED: peroxisome biogenesis protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449487682|ref|XP_004157748.1| PREDICTED: peroxisome biogenesis protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297806891|ref|XP_002871329.1| peroxisome biogenesis protein PEX1 [Arabidopsis lyrata subsp. lyrata] gi|297317166|gb|EFH47588.1| peroxisome biogenesis protein PEX1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|12006272|gb|AAG44817.1| peroxisome biogenesis protein PEX1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30682405|ref|NP_196464.2| peroxisome 1 [Arabidopsis thaliana] gi|322967561|sp|Q9FNP1.2|PEX1_ARATH RecName: Full=Peroxisome biogenesis protein 1; AltName: Full=Peroxin-1; Short=AtPEX1 gi|332003924|gb|AED91307.1| peroxisome 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9759341|dbj|BAB09996.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806913|ref|XP_002871340.1| hypothetical protein ARALYDRAFT_908820 [Arabidopsis lyrata subsp. lyrata] gi|297317177|gb|EFH47599.1| hypothetical protein ARALYDRAFT_908820 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNP1PEX1_ARATHNo assigned EC number0.64200.98370.6955yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035546001
SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (1067 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
TIGR01243733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 1e-104
COG0464494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 2e-98
COG1222406 COG1222, RPT1, ATP-dependent 26S proteasome regula 2e-67
PRK03992389 PRK03992, PRK03992, proteasome-activating nucleoti 1e-64
TIGR01242364 TIGR01242, 26Sp45, 26S proteasome subunit P45 fami 5e-64
TIGR01243 733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 3e-60
TIGR01241 495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 2e-56
CHL00176 638 CHL00176, ftsH, cell division protein; Validated 2e-52
PTZ00454398 PTZ00454, PTZ00454, 26S protease regulatory subuni 1e-51
pfam00004131 pfam00004, AAA, ATPase family associated with vari 3e-46
PRK10733 644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 1e-45
COG0465 596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 3e-45
TIGR03689512 TIGR03689, pup_AAA, proteasome ATPase 1e-44
PTZ00361438 PTZ00361, PTZ00361, 26 proteosome regulatory subun 3e-42
COG1223368 COG1223, COG1223, Predicted ATPase (AAA+ superfami 9e-38
COG0464 494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 2e-37
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 2e-21
pfam00004131 pfam00004, AAA, ATPase family associated with vari 7e-17
CHL00195489 CHL00195, ycf46, Ycf46; Provisional 3e-15
smart00382148 smart00382, AAA, ATPases associated with a variety 1e-12
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 1e-10
TIGR01241495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 9e-10
COG1222406 COG1222, RPT1, ATP-dependent 26S proteasome regula 2e-09
TIGR01242364 TIGR01242, 26Sp45, 26S proteasome subunit P45 fami 4e-08
smart00382148 smart00382, AAA, ATPases associated with a variety 6e-08
PTZ00454398 PTZ00454, PTZ00454, 26S protease regulatory subuni 6e-07
PRK03992389 PRK03992, PRK03992, proteasome-activating nucleoti 7e-07
PRK10733644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 2e-06
COG0465596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 2e-06
TIGR03689512 TIGR03689, pup_AAA, proteasome ATPase 5e-06
PTZ00361438 PTZ00361, PTZ00361, 26 proteosome regulatory subun 7e-06
COG0714329 COG0714, COG0714, MoxR-like ATPases [General funct 1e-05
CHL00195489 CHL00195, ycf46, Ycf46; Provisional 5e-05
PRK00080328 PRK00080, ruvB, Holliday junction DNA helicase Ruv 8e-05
CHL00176638 CHL00176, ftsH, cell division protein; Validated 1e-04
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 1e-04
pfam13481154 pfam13481, AAA_25, AAA domain 1e-04
pfam13401124 pfam13401, AAA_22, AAA domain 1e-04
pfam13207114 pfam13207, AAA_17, AAA domain 2e-04
COG1223368 COG1223, COG1223, Predicted ATPase (AAA+ superfami 4e-04
COG2255332 COG2255, RuvB, Holliday junction resolvasome, heli 5e-04
COG0593408 COG0593, DnaA, ATPase involved in DNA replication 7e-04
TIGR02928365 TIGR02928, TIGR02928, orc1/cdc6 family replication 0.001
pfam07726131 pfam07726, AAA_3, ATPase family associated with va 0.001
PRK13342413 PRK13342, PRK13342, recombination factor protein R 0.001
pfam05496231 pfam05496, RuvB_N, Holliday junction DNA helicase 0.001
COG0593408 COG0593, DnaA, ATPase involved in DNA replication 0.002
TIGR03922557 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas 0.003
pfam13238128 pfam13238, AAA_18, AAA domain 0.003
COG0714329 COG0714, COG0714, MoxR-like ATPases [General funct 0.004
TIGR00635305 TIGR00635, ruvB, Holliday junction DNA helicase, R 0.004
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information 
 Score =  336 bits (864), Expect = e-104
 Identities = 197/556 (35%), Positives = 296/556 (53%), Gaps = 59/556 (10%)

Query: 255 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII--------R 306
           P  +L++GPPG+GKT LAKAVA          A   F+  +      GP I         
Sbjct: 212 PKGVLLYGPPGTGKTLLAKAVANE--------AGAYFISIN------GPEIMSKYYGESE 257

Query: 307 QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 366
           + L     EA ++APSI+  D +D+I     +  G +    V+A    L+ +MD  G K 
Sbjct: 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG-EVEKRVVAQ---LLTLMD--GLK- 310

Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
               G G +  + +    + +  +L   GRFD  + +  P    RK IL+  +  R++  
Sbjct: 311 ----GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILK--VHTRNMPL 364

Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLHSDS-SFEKHIKPTLV------- 477
           ++++ LD +A    G+   DL  L      AA+ R++     +FE    P  V       
Sbjct: 365 AEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVT 424

Query: 478 RDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 537
             DF +A+    P A+R++     E     W D+GGL +++  ++E +E P K P IF +
Sbjct: 425 MKDFMEALKMVEPSAIREVL---VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEK 481

Query: 538 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSK 597
             +R    VLL+GPPG GKT +  A A      FI+V+GPE+L+K++G SE+A+R+IF K
Sbjct: 482 MGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRK 541

Query: 598 ATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 656
           A  AAP ++FFDE D+IAP RG   +T VTDR+VNQ LTE+DG++ L+ V V AAT+RPD
Sbjct: 542 ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601

Query: 657 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADL 716
           +LD ALLRPGR DRL+    P    R +I K+ +R +PLA+DVDLE +A MTEG++GAD+
Sbjct: 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADI 661

Query: 717 QALLSDAQLSAVHEILNNI-------DSNEPGKMPVITDALLKSIASKARPSVSEAEKLR 769
           +A+  +A ++A+ E + +           E  K   +          K +PSVS+ + LR
Sbjct: 662 EAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLR 721

Query: 770 LYSIYGQFLDSKKSVA 785
               Y +     K + 
Sbjct: 722 ----YERLAKELKRLT 733

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase Back     alignment and domain information
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase Back     alignment and domain information
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional Back     alignment and domain information
>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain Back     alignment and domain information
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein Back     alignment and domain information
>gnl|CDD|116340 pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed Back     alignment and domain information
>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus Back     alignment and domain information
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA Back     alignment and domain information
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain Back     alignment and domain information
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 799
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 100.0
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 100.0
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 100.0
KOG0736953 consensus Peroxisome assembly factor 2 containing 100.0
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 100.0
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 100.0
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 100.0
CHL00195489 ycf46 Ycf46; Provisional 100.0
KOG0733 802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 100.0
KOG0734 752 consensus AAA+-type ATPase containing the peptidas 100.0
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 100.0
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 100.0
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 100.0
KOG0731 774 consensus AAA+-type ATPase containing the peptidas 100.0
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 100.0
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 100.0
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 100.0
PRK03992389 proteasome-activating nucleotidase; Provisional 100.0
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 100.0
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 100.0
COG0465 596 HflB ATP-dependent Zn proteases [Posttranslational 100.0
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 100.0
TIGR01241 495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 100.0
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 100.0
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 100.0
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 100.0
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 100.0
KOG0741 744 consensus AAA+-type ATPase [Posttranslational modi 100.0
CHL00176 638 ftsH cell division protein; Validated 100.0
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 100.0
KOG0734752 consensus AAA+-type ATPase containing the peptidas 100.0
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 100.0
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 100.0
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 100.0
KOG0736953 consensus Peroxisome assembly factor 2 containing 100.0
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 100.0
CHL00206 2281 ycf2 Ycf2; Provisional 100.0
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 99.98
PRK10733 644 hflB ATP-dependent metalloprotease; Reviewed 99.98
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 99.98
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 99.97
KOG0731774 consensus AAA+-type ATPase containing the peptidas 99.97
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 99.97
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 99.97
CHL00195489 ycf46 Ycf46; Provisional 99.97
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 99.97
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 99.97
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.97
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 99.97
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 99.97
PRK03992389 proteasome-activating nucleotidase; Provisional 99.97
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 99.97
CHL00095821 clpC Clp protease ATP binding subunit 99.96
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 99.96
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 99.96
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 99.96
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 99.96
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.96
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 99.96
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 99.96
PRK10865857 protein disaggregation chaperone; Provisional 99.95
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.95
CHL00176638 ftsH cell division protein; Validated 99.95
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 99.95
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 99.95
CHL002062281 ycf2 Ycf2; Provisional 99.95
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 99.94
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 99.93
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 99.93
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 99.92
CHL00181287 cbbX CbbX; Provisional 99.88
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.87
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 99.87
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.87
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 99.86
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.85
PF00004132 AAA: ATPase family associated with various cellula 99.84
CHL00181287 cbbX CbbX; Provisional 99.84
COG2256 436 MGS1 ATPase related to the helicase subunit of the 99.84
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.84
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 99.82
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.81
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.8
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 99.79
PF00004132 AAA: ATPase family associated with various cellula 99.77
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 99.77
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 99.76
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.75
TIGR00763 775 lon ATP-dependent protease La. This protein is ind 99.73
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.73
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.73
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.72
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.72
KOG2028 554 consensus ATPase related to the helicase subunit o 99.72
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.71
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 99.71
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.71
TIGR00763775 lon ATP-dependent protease La. This protein is ind 99.69
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 99.67
PRK13342 413 recombination factor protein RarA; Reviewed 99.67
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 99.65
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 99.65
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.65
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 99.64
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 99.63
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.63
COG0466 782 Lon ATP-dependent Lon protease, bacterial type [Po 99.63
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 99.62
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.62
COG2256436 MGS1 ATPase related to the helicase subunit of the 99.62
PRK04195482 replication factor C large subunit; Provisional 99.62
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 99.61
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 99.61
KOG1051 898 consensus Chaperone HSP104 and related ATP-depende 99.61
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.6
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 99.6
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 99.6
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.6
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 99.6
PRK04195 482 replication factor C large subunit; Provisional 99.6
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 99.59
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.59
PLN03025319 replication factor C subunit; Provisional 99.59
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.59
PLN03025319 replication factor C subunit; Provisional 99.59
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.58
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 99.58
PRK13341 725 recombination factor protein RarA/unknown domain f 99.58
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.58
KOG2004 906 consensus Mitochondrial ATP-dependent protease PIM 99.57
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 99.57
PTZ00112 1164 origin recognition complex 1 protein; Provisional 99.57
PRK10865 857 protein disaggregation chaperone; Provisional 99.57
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.57
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 99.56
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 99.56
PRK06893229 DNA replication initiation factor; Validated 99.56
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.56
PRK12402337 replication factor C small subunit 2; Reviewed 99.55
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 99.55
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 99.55
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 99.55
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 99.55
PRK12402337 replication factor C small subunit 2; Reviewed 99.55
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.55
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 99.55
PRK07940394 DNA polymerase III subunit delta'; Validated 99.54
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 99.54
PRK00149450 dnaA chromosomal replication initiation protein; R 99.53
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.53
PHA02544316 44 clamp loader, small subunit; Provisional 99.53
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.53
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 99.53
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.53
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.53
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.53
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 99.52
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.52
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.52
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 99.52
PRK13342413 recombination factor protein RarA; Reviewed 99.52
CHL00095 821 clpC Clp protease ATP binding subunit 99.51
TIGR00362405 DnaA chromosomal replication initiator protein Dna 99.51
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 99.51
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 99.51
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 99.51
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.51
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 99.51
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 99.51
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.5
TIGR00362405 DnaA chromosomal replication initiator protein Dna 99.5
PRK14088440 dnaA chromosomal replication initiation protein; P 99.5
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 99.5
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.5
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.5
PRK08084235 DNA replication initiation factor; Provisional 99.5
PRK13341 725 recombination factor protein RarA/unknown domain f 99.5
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.5
PRK00149450 dnaA chromosomal replication initiation protein; R 99.5
PHA02544316 44 clamp loader, small subunit; Provisional 99.49
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.49
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 99.49
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.49
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 99.49
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 99.49
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 99.49
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 99.49
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 99.48
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.48
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 99.48
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.47
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 99.46
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 99.46
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 99.46
PRK14953 486 DNA polymerase III subunits gamma and tau; Provisi 99.46
PTZ001121164 origin recognition complex 1 protein; Provisional 99.46
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 99.46
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 99.46
PRK14086617 dnaA chromosomal replication initiation protein; P 99.46
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.45
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 99.45
PRK08903227 DnaA regulatory inactivator Hda; Validated 99.45
PRK08727233 hypothetical protein; Validated 99.45
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 99.45
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 99.44
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 99.44
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 99.44
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 99.44
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 99.44
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 99.43
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.43
PRK06305 451 DNA polymerase III subunits gamma and tau; Validat 99.43
PRK00440319 rfc replication factor C small subunit; Reviewed 99.43
PRK06893229 DNA replication initiation factor; Validated 99.43
PRK05642234 DNA replication initiation factor; Validated 99.43
PRK12422445 chromosomal replication initiation protein; Provis 99.43
PRK14088440 dnaA chromosomal replication initiation protein; P 99.42
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 99.42
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 99.42
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 99.42
PRK07940394 DNA polymerase III subunit delta'; Validated 99.42
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 99.42
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 99.41
PRK00440319 rfc replication factor C small subunit; Reviewed 99.41
PRK12422445 chromosomal replication initiation protein; Provis 99.41
COG2812 515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 99.4
PRK14087450 dnaA chromosomal replication initiation protein; P 99.4
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 99.4
KOG1969877 consensus DNA replication checkpoint protein CHL12 99.4
PRK08084235 DNA replication initiation factor; Provisional 99.39
PRK14086617 dnaA chromosomal replication initiation protein; P 99.39
PRK08903227 DnaA regulatory inactivator Hda; Validated 99.38
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 99.38
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 99.38
KOG1969 877 consensus DNA replication checkpoint protein CHL12 99.37
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.37
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.37
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 99.37
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 99.37
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.36
PRK06620214 hypothetical protein; Validated 99.36
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.35
PRK08727233 hypothetical protein; Validated 99.35
PRK14087450 dnaA chromosomal replication initiation protein; P 99.35
KOG2028554 consensus ATPase related to the helicase subunit o 99.35
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 99.35
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 99.35
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 99.35
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 99.34
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 99.34
PRK05642234 DNA replication initiation factor; Validated 99.34
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.33
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 99.32
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 99.31
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 99.29
PRK09087226 hypothetical protein; Validated 99.28
COG1221403 PspF Transcriptional regulators containing an AAA- 99.27
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.27
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 99.27
COG0593408 DnaA ATPase involved in DNA replication initiation 99.26
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 99.26
PRK06620214 hypothetical protein; Validated 99.26
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.25
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.25
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 99.25
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.25
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 99.24
PRK09112351 DNA polymerase III subunit delta'; Validated 99.23
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 99.22
COG0593408 DnaA ATPase involved in DNA replication initiation 99.21
PRK13531498 regulatory ATPase RavA; Provisional 99.21
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 99.2
TIGR02974329 phageshock_pspF psp operon transcriptional activat 99.2
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 99.2
PRK11608326 pspF phage shock protein operon transcriptional ac 99.2
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 99.18
PHA02244383 ATPase-like protein 99.18
PRK07471365 DNA polymerase III subunit delta'; Validated 99.18
PRK04132846 replication factor C small subunit; Provisional 99.17
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 99.16
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.16
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 99.15
PHA02244383 ATPase-like protein 99.15
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 99.15
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 99.15
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 99.15
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 99.14
PRK05564313 DNA polymerase III subunit delta'; Validated 99.13
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 99.13
TIGR00602 637 rad24 checkpoint protein rad24. This family is bas 99.13
TIGR01817534 nifA Nif-specific regulatory protein. This model r 99.12
PRK04132846 replication factor C small subunit; Provisional 99.12
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 99.12
COG0470325 HolB ATPase involved in DNA replication [DNA repli 99.12
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 99.12
PRK11331459 5-methylcytosine-specific restriction enzyme subun 99.11
COG0714329 MoxR-like ATPases [General function prediction onl 99.1
PRK09087226 hypothetical protein; Validated 99.1
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.1
COG2204464 AtoC Response regulator containing CheY-like recei 99.09
COG3829560 RocR Transcriptional regulator containing PAS, AAA 99.09
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 99.09
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 99.08
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 99.08
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 99.07
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.07
PRK05564313 DNA polymerase III subunit delta'; Validated 99.06
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 99.06
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 99.06
PRK05022509 anaerobic nitric oxide reductase transcription reg 99.05
smart00382148 AAA ATPases associated with a variety of cellular 99.05
PRK07399314 DNA polymerase III subunit delta'; Validated 99.05
COG0714329 MoxR-like ATPases [General function prediction onl 99.05
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 99.04
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 99.04
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 99.03
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.03
PRK11331459 5-methylcytosine-specific restriction enzyme subun 99.03
PRK09112351 DNA polymerase III subunit delta'; Validated 99.03
PRK05707328 DNA polymerase III subunit delta'; Validated 99.03
PRK07471365 DNA polymerase III subunit delta'; Validated 99.03
PRK15424538 propionate catabolism operon regulatory protein Pr 99.02
KOG0745564 consensus Putative ATP-dependent Clp-type protease 99.01
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 99.0
PRK08058329 DNA polymerase III subunit delta'; Validated 99.0
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 99.0
TIGR02329526 propionate_PrpR propionate catabolism operon regul 98.99
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 98.98
PRK13531 498 regulatory ATPase RavA; Provisional 98.96
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 98.94
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 98.94
PF07726131 AAA_3: ATPase family associated with various cellu 98.93
smart00382148 AAA ATPases associated with a variety of cellular 98.93
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.92
smart00350509 MCM minichromosome maintenance proteins. 98.92
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 98.92
PRK05707328 DNA polymerase III subunit delta'; Validated 98.91
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 98.91
KOG1514767 consensus Origin recognition complex, subunit 1, a 98.91
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 98.9
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 98.89
PRK07399314 DNA polymerase III subunit delta'; Validated 98.87
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 98.87
COG0470325 HolB ATPase involved in DNA replication [DNA repli 98.87
PF07726131 AAA_3: ATPase family associated with various cellu 98.87
KOG1942456 consensus DNA helicase, TBP-interacting protein [R 98.86
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 98.86
PRK06964342 DNA polymerase III subunit delta'; Validated 98.85
KOG0745564 consensus Putative ATP-dependent Clp-type protease 98.85
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 98.84
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.84
PRK06871325 DNA polymerase III subunit delta'; Validated 98.8
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 98.8
COG5245 3164 DYN1 Dynein, heavy chain [Cytoskeleton] 98.79
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 98.79
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 98.79
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 98.78
PRK08058329 DNA polymerase III subunit delta'; Validated 98.77
PF03215519 Rad17: Rad17 cell cycle checkpoint protein 98.76
PRK07993334 DNA polymerase III subunit delta'; Validated 98.75
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 98.74
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 98.74
smart00350509 MCM minichromosome maintenance proteins. 98.74
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.73
KOG2680454 consensus DNA helicase TIP49, TBP-interacting prot 98.73
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 98.73
PRK06871325 DNA polymerase III subunit delta'; Validated 98.72
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 98.72
KOG1514767 consensus Origin recognition complex, subunit 1, a 98.72
COG3829560 RocR Transcriptional regulator containing PAS, AAA 98.72
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 98.71
PRK08769319 DNA polymerase III subunit delta'; Validated 98.71
KOG1942456 consensus DNA helicase, TBP-interacting protein [R 98.71
PRK08116268 hypothetical protein; Validated 98.69
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 98.68
PRK07993334 DNA polymerase III subunit delta'; Validated 98.67
TIGR02974329 phageshock_pspF psp operon transcriptional activat 98.67
PRK08116268 hypothetical protein; Validated 98.66
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 98.66
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 98.66
PRK06964342 DNA polymerase III subunit delta'; Validated 98.66
PF13173128 AAA_14: AAA domain 98.66
COG0606490 Predicted ATPase with chaperone activity [Posttran 98.65
PRK06090319 DNA polymerase III subunit delta'; Validated 98.65
PRK15115444 response regulator GlrR; Provisional 98.65
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 98.65
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 98.64
PRK11608326 pspF phage shock protein operon transcriptional ac 98.64
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.63
COG1221403 PspF Transcriptional regulators containing an AAA- 98.63
PRK08769319 DNA polymerase III subunit delta'; Validated 98.62
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 98.62
PRK09862506 putative ATP-dependent protease; Provisional 98.61
PRK12377248 putative replication protein; Provisional 98.61
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 98.6
TIGR01817534 nifA Nif-specific regulatory protein. This model r 98.6
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.6
TIGR02329526 propionate_PrpR propionate catabolism operon regul 98.6
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.58
PRK08699325 DNA polymerase III subunit delta'; Validated 98.57
PRK08181269 transposase; Validated 98.57
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 98.56
PRK07952244 DNA replication protein DnaC; Validated 98.55
PRK15424538 propionate catabolism operon regulatory protein Pr 98.54
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 98.54
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 98.53
KOG2680454 consensus DNA helicase TIP49, TBP-interacting prot 98.53
PRK06090319 DNA polymerase III subunit delta'; Validated 98.52
COG2204464 AtoC Response regulator containing CheY-like recei 98.52
PRK13765 637 ATP-dependent protease Lon; Provisional 98.51
PRK08699325 DNA polymerase III subunit delta'; Validated 98.51
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 98.5
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.49
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.46
PTZ00111 915 DNA replication licensing factor MCM4; Provisional 98.45
PRK08181269 transposase; Validated 98.45
PF05729166 NACHT: NACHT domain 98.45
PF03215 519 Rad17: Rad17 cell cycle checkpoint protein 98.45
PRK07952244 DNA replication protein DnaC; Validated 98.44
PRK15429686 formate hydrogenlyase transcriptional activator Fh 98.44
PRK12377248 putative replication protein; Provisional 98.43
PRK06835329 DNA replication protein DnaC; Validated 98.42
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 98.4
PRK06835329 DNA replication protein DnaC; Validated 98.39
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.39
PTZ00111915 DNA replication licensing factor MCM4; Provisional 98.39
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 98.38
KOG1970634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 98.38
PF13173128 AAA_14: AAA domain 98.38
PRK06526254 transposase; Provisional 98.37
PRK06526254 transposase; Provisional 98.37
PRK09862506 putative ATP-dependent protease; Provisional 98.36
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.36
PRK09302509 circadian clock protein KaiC; Reviewed 98.35
COG1484254 DnaC DNA replication protein [DNA replication, rec 98.35
PRK06921266 hypothetical protein; Provisional 98.34
PRK09183259 transposase/IS protein; Provisional 98.34
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.33
COG3283511 TyrR Transcriptional regulator of aromatic amino a 98.33
PRK06921266 hypothetical protein; Provisional 98.32
COG1484254 DnaC DNA replication protein [DNA replication, rec 98.32
KOG3595 1395 consensus Dyneins, heavy chain [Cytoskeleton] 98.31
PRK08939306 primosomal protein DnaI; Reviewed 98.3
PRK15115444 response regulator GlrR; Provisional 98.3
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.3
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.3
PRK08939306 primosomal protein DnaI; Reviewed 98.29
PRK13406584 bchD magnesium chelatase subunit D; Provisional 98.27
PRK05917290 DNA polymerase III subunit delta'; Validated 98.27
PRK09183259 transposase/IS protein; Provisional 98.27
KOG2170344 consensus ATPase of the AAA+ superfamily [General 98.26
KOG1968871 consensus Replication factor C, subunit RFC1 (larg 98.25
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.25
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 98.24
PRK05917290 DNA polymerase III subunit delta'; Validated 98.17
COG0606490 Predicted ATPase with chaperone activity [Posttran 98.16
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 98.16
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 98.16
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 98.16
KOG1970 634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 98.15
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 98.15
PF14516331 AAA_35: AAA-like domain 98.15
PRK07276290 DNA polymerase III subunit delta'; Validated 98.13
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 98.13
PRK06851367 hypothetical protein; Provisional 98.11
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 98.09
PRK05818261 DNA polymerase III subunit delta'; Validated 98.08
PRK13765637 ATP-dependent protease Lon; Provisional 98.08
COG3284606 AcoR Transcriptional activator of acetoin/glycerol 98.06
PRK07132299 DNA polymerase III subunit delta'; Validated 98.06
PRK07132299 DNA polymerase III subunit delta'; Validated 98.06
PHA02624647 large T antigen; Provisional 98.04
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.01
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 97.98
KOG0478804 consensus DNA replication licensing factor, MCM4 c 97.98
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 97.97
KOG2228408 consensus Origin recognition complex, subunit 4 [R 97.97
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.95
TIGR02237209 recomb_radB DNA repair and recombination protein R 97.95
KOG1968 871 consensus Replication factor C, subunit RFC1 (larg 97.95
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 97.95
COG1618179 Predicted nucleotide kinase [Nucleotide transport 97.94
PF05729166 NACHT: NACHT domain 97.91
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.9
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.87
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 97.86
PRK07276290 DNA polymerase III subunit delta'; Validated 97.86
PRK14700 300 recombination factor protein RarA; Provisional 97.84
TIGR02237209 recomb_radB DNA repair and recombination protein R 97.82
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 97.8
KOG0480764 consensus DNA replication licensing factor, MCM6 c 97.8
PHA02774613 E1; Provisional 97.79
COG4650531 RtcR Sigma54-dependent transcription regulator con 97.78
PRK05818261 DNA polymerase III subunit delta'; Validated 97.76
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-93  Score=768.79  Aligned_cols=543  Identities=36%  Similarity=0.577  Sum_probs=485.5

Q ss_pred             CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743          215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC  294 (799)
Q Consensus       215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~  294 (799)
                      ...|.+++|++....++.+.+....   .++.|..+|+.+|+++|||||||||||+||+++|++++      .+++.+++
T Consensus       186 nv~f~diGG~d~~~~el~~li~~i~---~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isA  256 (802)
T KOG0733|consen  186 NVSFSDIGGLDKTLAELCELIIHIK---HPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISA  256 (802)
T ss_pred             CcchhhccChHHHHHHHHHHHHHhc---CchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecc
Confidence            4569999999999999988887743   78899999999999999999999999999999999999      99999999


Q ss_pred             ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743          295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP  374 (799)
Q Consensus       295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~  374 (799)
                      .++.....|+.+++++++|.+|....|||+||||||++.+.|..   .+. ....++..+|+..||++.....   ...+
T Consensus       257 peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqr-eMErRiVaQLlt~mD~l~~~~~---~g~~  329 (802)
T KOG0733|consen  257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQR-EMERRIVAQLLTSMDELSNEKT---KGDP  329 (802)
T ss_pred             hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHH-HHHHHHHHHHHHhhhccccccc---CCCC
Confidence            99999999999999999999999999999999999999976654   233 3345889999999999875422   2246


Q ss_pred             EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743          375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV  454 (799)
Q Consensus       375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~  454 (799)
                      |+||++||+|+.+||+|+|+|||++.|.+..|+..+|.+||+.++++..+.- +-.+..||+.|.||.|+||..||..|+
T Consensus       330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa  408 (802)
T KOG0733|consen  330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA  408 (802)
T ss_pred             eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998766654 334889999999999999999999999


Q ss_pred             HHHhcccccCCC----------c-----cc------------------------------------ccccccceecccch
Q 003743          455 HAAVGRYLHSDS----------S-----FE------------------------------------KHIKPTLVRDDFSQ  483 (799)
Q Consensus       455 ~~a~~r~~~~~~----------~-----~~------------------------------------~~~~~~l~~edf~~  483 (799)
                      ..|++|.+....          .     .+                                    ....-.+..+||..
T Consensus       409 ~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~  488 (802)
T KOG0733|consen  409 FVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEE  488 (802)
T ss_pred             HHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHH
Confidence            999999764211          0     00                                    00011244678889


Q ss_pred             hcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHH
Q 003743          484 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA  563 (799)
Q Consensus       484 al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~al  563 (799)
                      |+..+.|++.++....+|.   +.|++|+++++++.+|...+.+|+++|++|+..|+..+.|+|||||||||||.+|+|+
T Consensus       489 Al~~iQPSakREGF~tVPd---VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV  565 (802)
T KOG0733|consen  489 ALSKIQPSAKREGFATVPD---VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV  565 (802)
T ss_pred             HHHhcCcchhcccceecCC---CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence            9999999998887776665   8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCCchhhHHHHHHHhhccCcccc
Q 003743          564 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL  643 (799)
Q Consensus       564 A~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~~~~~r~~~~ll~~ld~~~~~  643 (799)
                      |++.+++|+.|.+++|+++|+|++|..++.+|.+|+...||||||||+|+|+++|+........|++|+||++|||++..
T Consensus       566 ANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R  645 (802)
T KOG0733|consen  566 ANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER  645 (802)
T ss_pred             hhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             CcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHHHHHHHc--cCCCCCcccHHHHHHHCC--CCcHHHHHHH
Q 003743          644 TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR--KLPLADDVDLEAIAHMTE--GFSGADLQAL  719 (799)
Q Consensus       644 ~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~~~~~la~~~~--g~sg~di~~~  719 (799)
                      .+|+|||+||+|+.+|||++||||||+.+|+++|+.++|.+|||...+  +.++..++|++.||..+.  ||||+||..+
T Consensus       646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaL  725 (802)
T KOG0733|consen  646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAAL  725 (802)
T ss_pred             cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHH
Confidence            999999999999999999999999999999999999999999999999  888999999999999877  9999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCC-----CCcccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 003743          720 LSDAQLSAVHEILNNIDSNEPGK-----MPVITDALLKSIASKARPSVSEAEKLRLYSIYGQF  777 (799)
Q Consensus       720 ~~~a~~~a~~~~~~~~~~~~~~~-----~~~it~e~l~~a~~~~~~~~~~~~~~~~~~~~~~f  777 (799)
                      |++|...|+++.+..........     ...+|..||++|++.++|++++.+..+|......+
T Consensus       726 vreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~  788 (802)
T KOG0733|consen  726 VREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSR  788 (802)
T ss_pred             HHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhh
Confidence            99999999999887555443221     23578999999999999999999988776665544

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PRK06851 hypothetical protein; Provisional Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14700 recombination factor protein RarA; Provisional Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] Back     alignment and domain information
>PHA02774 E1; Provisional Back     alignment and domain information
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
1r7r_A816 The Crystal Structure Of Murine P97VCP AT 3.6A Leng 8e-72
1r7r_A 816 The Crystal Structure Of Murine P97VCP AT 3.6A Leng 3e-42
3cf1_A806 Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len 1e-71
3cf1_A 806 Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len 4e-42
3cf0_A301 Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH 4e-57
2x8a_A274 Human Nuclear Valosin Containing Protein Like (Nvl) 6e-55
3h4m_A285 Aaa Atpase Domain Of The Proteasome- Activating Nuc 3e-45
1e32_A458 Structure Of The N-Terminal Domain And The D1 Aaa D 2e-42
3hu3_A489 Structure Of P97 N-D1 R155h Mutant In Complex With 2e-42
3hu1_A489 Structure Of P97 N-D1 R95g Mutant In Complex With A 3e-42
3hu2_A489 Structure Of P97 N-D1 R86a Mutant In Complex With A 3e-42
4b4t_L437 Near-Atomic Resolution Structural Model Of The Yeas 5e-41
2ce7_A 476 Edta Treated Length = 476 7e-41
3kds_E 465 Apo-ftsh Crystal Structure Length = 465 4e-40
4eiw_A 508 Whole Cytosolic Region Of Atp-Dependent Metalloprot 7e-40
1lv7_A257 Crystal Structure Of The Aaa Domain Of Ftsh Length 7e-40
2dhr_A 499 Whole Cytosolic Region Of Atp-Dependent Metalloprot 8e-40
1iy2_A278 Crystal Structure Of The Ftsh Atpase Domain From Th 2e-39
1ixz_A254 Crystal Structure Of The Ftsh Atpase Domain From Th 3e-39
4b4t_J405 Near-Atomic Resolution Structural Model Of The Yeas 6e-39
4b4t_K428 Near-Atomic Resolution Structural Model Of The Yeas 7e-38
4b4t_M434 Near-Atomic Resolution Structural Model Of The Yeas 1e-34
2qz4_A262 Human Paraplegin, Aaa Domain In Complex With Adp Le 3e-33
4b4t_I437 Near-Atomic Resolution Structural Model Of The Yeas 2e-32
2r62_A268 Crystal Structure Of Helicobacter Pylori Atp Depend 2e-32
4b4t_H467 Near-Atomic Resolution Structural Model Of The Yeas 9e-32
2qp9_X355 Crystal Structure Of S.Cerevisiae Vps4 Length = 355 1e-29
2rko_A331 Crystal Structure Of The Vps4p-Dimer Length = 331 2e-29
3eih_A340 Crystal Structure Of S.Cerevisiae Vps4 In The Prese 4e-29
3eie_A322 Crystal Structure Of S.Cerevisiae Vps4 In The So4-B 6e-29
1xwi_A322 Crystal Structure Of Vps4b Length = 322 6e-28
2zam_A444 Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt 2e-27
3b9p_A297 Spastin Length = 297 2e-25
3vfd_A389 Human Spastin Aaa Domain Length = 389 4e-25
3d8b_A357 Crystal Structure Of Human Fidgetin-Like Protein 1 5e-24
1ofh_A310 Asymmetric Complex Between Hslv And I-domain Delete 8e-04
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (685), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 174/477 (36%), Positives = 257/477 (53%), Gaps = 32/477 (6%)
Query: 247 FSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR 306
           F    +  P  IL++GPPG+GKT +A+AVA        L+     +  S+L+ E    +R
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLR 287
Query: 307 QALSNFISEALDHAPSIVIFDNLXXXXXXXXXXXXXXXXXXVIALTKFLVDIMDEYGEKR 366
           +A      EA  +AP+I+  D L                  V  L    + +MD  G K+
Sbjct: 288 KAFE----EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL----LTLMD--GLKQ 337
Query: 367 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 426
           ++      +  +A+      I  +L   GRFD  V +  P A+ R  IL+  I  ++++ 
Sbjct: 338 RAH-----VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ--IHTKNMKL 390
Query: 427 SDEILLD-VASKCDGYDAYDLEILVDRTVHAAVGRYLH----SDSSFEKHIKPTL--VRD 479
           +D++ L+ VA++  G+   DL  L       A+ + +      D + +  +  +L    D
Sbjct: 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 480 DFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP 539
           DF  A+ +  P A+R+   T  E  +  W+D+GGL D++  ++E+++ P + P+ F +  
Sbjct: 451 DFRWALSQSNPSALRE---TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 507
Query: 540 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAT 599
           +     VL YGPPGCGKT +  A A  C   FIS+KGPELL  + G SE  VR+IF KA 
Sbjct: 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Query: 600 AAAPCLLFFDEFDSIAPKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 656
            AAPC+LFFDE DSIA  R     D  G  DRV+NQ LTE+DG+     VF+  AT+RPD
Sbjct: 568 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 657 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 713
           ++D A+LRPGRLD+L++   P  + R+ ILK   RK P+A DVDLE +A MT GFSG
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Back     alignment and structure
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 Back     alignment and structure
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 Back     alignment and structure
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 Back     alignment and structure
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 Back     alignment and structure
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 Back     alignment and structure
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 Back     alignment and structure
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|2CE7|A Chain A, Edta Treated Length = 476 Back     alignment and structure
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 Back     alignment and structure
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 Back     alignment and structure
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 Back     alignment and structure
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Back     alignment and structure
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 Back     alignment and structure
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 Back     alignment and structure
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 Back     alignment and structure
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 Back     alignment and structure
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 Back     alignment and structure
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 Back     alignment and structure
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 Back     alignment and structure
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 Back     alignment and structure
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 Back     alignment and structure
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 Back     alignment and structure
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 Back     alignment and structure
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 Back     alignment and structure
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 Back     alignment and structure
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 Back     alignment and structure
>pdb|3B9P|A Chain A, Spastin Length = 297 Back     alignment and structure
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 Back     alignment and structure
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 Back     alignment and structure
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 1e-177
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 7e-84
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 1e-137
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 5e-18
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 1e-123
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 4e-18
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 5e-89
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 2e-26
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 3e-83
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 4e-13
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 2e-78
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 2e-14
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 4e-77
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 3e-12
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 7e-77
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 2e-14
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 1e-76
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 3e-15
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 9e-75
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 2e-15
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 8e-74
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 3e-15
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 5e-73
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 1e-13
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 1e-72
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 4e-13
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 7e-58
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 3e-06
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 3e-57
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 3e-06
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 3e-57
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 2e-06
2r62_A268 Cell division protease FTSH homolog; ATPase domain 6e-56
2r62_A268 Cell division protease FTSH homolog; ATPase domain 2e-05
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 1e-53
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 1e-06
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 7e-53
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 8e-53
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 1e-51
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-15
2krk_A86 26S protease regulatory subunit 8; structural geno 4e-15
3kw6_A78 26S protease regulatory subunit 8; structural geno 6e-15
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 1e-14
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 3e-09
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 3e-14
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 3e-14
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 5e-14
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 3e-10
2chq_A319 Replication factor C small subunit; DNA-binding pr 2e-08
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 4e-08
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 2e-04
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 9e-08
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 7e-07
2chg_A226 Replication factor C small subunit; DNA-binding pr 1e-06
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 1e-06
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 6e-06
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 3e-05
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 1e-05
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 1e-05
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 2e-04
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 2e-05
2qgz_A308 Helicase loader, putative primosome component; str 3e-05
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 4e-05
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 4e-05
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 6e-05
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 2e-04
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 5e-04
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 6e-04
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 8e-04
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193 Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Length = 350 Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query799
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 100.0
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 100.0
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 100.0
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 100.0
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 100.0
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 100.0
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 100.0
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 100.0
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 100.0
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 100.0
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 100.0
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 100.0
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 100.0
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 100.0
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 100.0
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 100.0
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 100.0
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 100.0
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 100.0
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 100.0
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 100.0
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 100.0
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 100.0
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 100.0
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 100.0
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 100.0
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 100.0
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 100.0
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 100.0
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 100.0
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.97
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.97
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.97
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.97
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 99.97
2r62_A268 Cell division protease FTSH homolog; ATPase domain 99.96
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 99.96
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 99.96
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 99.96
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.96
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 99.96
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 99.96
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.95
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 99.95
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 99.95
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 99.95
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 99.95
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 99.95
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.94
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 99.94
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 99.94
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 99.94
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.93
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.92
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 99.92
2r62_A268 Cell division protease FTSH homolog; ATPase domain 99.92
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.91
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 99.88
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.87
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.87
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 99.85
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 99.84
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 99.81
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.79
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.79
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.77
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 99.77
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 99.77
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 99.76
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.76
1g41_A 444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.76
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.75
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 99.74
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.73
3pvs_A 447 Replication-associated recombination protein A; ma 99.73
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.73
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.72
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.72
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.72
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 99.71
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 99.7
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 99.7
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.69
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.69
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 99.68
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 99.68
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.68
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.67
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 99.67
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 99.66
3bos_A242 Putative DNA replication factor; P-loop containing 99.65
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.65
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 99.65
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.65
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 99.64
3pvs_A447 Replication-associated recombination protein A; ma 99.64
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 99.64
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.64
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.63
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 99.63
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 99.63
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.63
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.63
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.62
3bos_A242 Putative DNA replication factor; P-loop containing 99.62
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 99.62
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.61
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 99.61
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 99.61
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.61
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.6
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 99.6
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.6
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 99.6
2chq_A319 Replication factor C small subunit; DNA-binding pr 99.6
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.59
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.59
2chq_A319 Replication factor C small subunit; DNA-binding pr 99.59
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 99.59
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 99.58
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 99.58
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 99.58
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.58
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 99.58
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 99.57
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.56
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 99.56
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 99.55
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.55
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 99.55
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 99.55
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 99.55
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 99.55
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 99.54
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.53
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 99.53
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 99.52
1ojl_A304 Transcriptional regulatory protein ZRAR; response 99.52
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.52
3cmw_A1706 Protein RECA, recombinase A; homologous recombinat 99.51
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.51
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 99.47
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 99.46
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.45
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.45
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 99.44
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.41
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 99.38
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 99.35
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 99.33
1ojl_A304 Transcriptional regulatory protein ZRAR; response 99.33
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.33
2gno_A305 DNA polymerase III, gamma subunit-related protein; 99.33
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.3
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.29
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 99.29
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 99.28
3co5_A143 Putative two-component system transcriptional RES 99.26
3co5_A143 Putative two-component system transcriptional RES 99.21
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 99.21
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.19
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 99.18
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 99.14
2gno_A305 DNA polymerase III, gamma subunit-related protein; 99.13
2krk_A86 26S protease regulatory subunit 8; structural geno 99.08
3kw6_A78 26S protease regulatory subunit 8; structural geno 99.05
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 99.05
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 99.03
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 98.99
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 98.9
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 98.85
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.85
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 98.79
2fna_A357 Conserved hypothetical protein; structural genomic 98.79
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.77
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.77
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 98.77
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 98.76
1tue_A212 Replication protein E1; helicase, replication, E1E 98.7
3f8t_A506 Predicted ATPase involved in replication control, 98.65
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 98.65
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 98.62
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 98.61
2fna_A357 Conserved hypothetical protein; structural genomic 98.59
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 98.58
3f8t_A506 Predicted ATPase involved in replication control, 98.56
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 98.54
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.54
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 98.53
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 98.5
2qgz_A308 Helicase loader, putative primosome component; str 98.47
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 98.46
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 98.4
2qgz_A308 Helicase loader, putative primosome component; str 98.38
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 98.38
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 98.33
2krk_A86 26S protease regulatory subunit 8; structural geno 98.3
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 98.25
3kw6_A78 26S protease regulatory subunit 8; structural geno 98.25
1tue_A212 Replication protein E1; helicase, replication, E1E 98.22
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 98.2
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 98.01
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 98.0
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 97.98
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 97.95
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 97.93
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.71
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.67
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.66
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 97.66
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.62
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 97.61
1xp8_A366 RECA protein, recombinase A; recombination, radior 97.54
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.54
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 97.51
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 97.51
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 97.47
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 97.45
2z43_A324 DNA repair and recombination protein RADA; archaea 97.44
1xp8_A366 RECA protein, recombinase A; recombination, radior 97.44
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.41
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 97.39
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 97.35
1u94_A356 RECA protein, recombinase A; homologous recombinat 97.35
2z43_A324 DNA repair and recombination protein RADA; archaea 97.34
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 97.33
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 97.33
1u94_A356 RECA protein, recombinase A; homologous recombinat 97.3
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 97.27
4a74_A231 DNA repair and recombination protein RADA; hydrola 97.26
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 97.24
3upu_A 459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.23
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 97.23
3io5_A333 Recombination and repair protein; storage dimer, i 97.22
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 97.21
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 97.21
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 97.19
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 97.19
3io5_A333 Recombination and repair protein; storage dimer, i 97.18
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 97.14
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 97.08
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 97.06
4a74_A231 DNA repair and recombination protein RADA; hydrola 97.05
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 97.04
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 97.04
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 97.02
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 97.02
1vma_A306 Cell division protein FTSY; TM0570, structural gen 97.0
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 97.0
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 96.96
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.96
3e1s_A 574 Exodeoxyribonuclease V, subunit RECD; alpha and be 96.96
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 96.95
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 96.95
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 96.94
2eyu_A261 Twitching motility protein PILT; pilus retraction 96.94
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 96.93
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 96.9
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 96.88
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.88
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 96.85
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 96.85
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 96.83
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 96.82
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.81
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.8
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 96.79
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 96.78
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.78
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.76
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 96.76
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 96.75
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 96.74
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.72
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 96.72
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.72
2eyu_A261 Twitching motility protein PILT; pilus retraction 96.71
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.71
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 96.7
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 96.69
2ewv_A372 Twitching motility protein PILT; pilus retraction 96.69
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 96.69
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 96.69
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 96.68
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 96.68
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 96.66
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 96.63
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 96.63
1kag_A173 SKI, shikimate kinase I; transferase, structural g 96.61
1via_A175 Shikimate kinase; structural genomics, transferase 96.6
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 96.57
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.57
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 96.57
1kag_A173 SKI, shikimate kinase I; transferase, structural g 96.57
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 96.56
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 96.54
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 96.54
1via_A175 Shikimate kinase; structural genomics, transferase 96.53
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 96.53
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 96.51
2r6a_A454 DNAB helicase, replicative helicase; replication, 96.51
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 96.47
2r6a_A454 DNAB helicase, replicative helicase; replication, 96.46
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 96.45
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 96.45
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 96.44
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 96.44
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 96.41
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 96.41
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 96.41
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 96.41
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 96.41
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 96.38
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 96.38
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 96.38
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 96.38
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 96.36
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 96.36
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 96.36
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 96.36
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 96.34
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 96.33
1vma_A306 Cell division protein FTSY; TM0570, structural gen 96.31
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 96.31
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 96.31
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 96.3
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 96.3
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 96.29
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 96.28
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 96.28
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 96.28
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 96.27
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 96.27
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 96.27
2ewv_A372 Twitching motility protein PILT; pilus retraction 96.27
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 96.26
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 96.26
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 96.26
1w36_D 608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.25
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 96.25
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 96.25
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 96.25
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 96.23
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 96.23
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 96.23
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 96.2
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 96.18
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 96.17
3tlx_A243 Adenylate kinase 2; structural genomics, structura 96.16
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 96.16
2vli_A183 Antibiotic resistance protein; transferase, tunica 96.16
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 96.15
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 96.15
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 96.14
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 96.14
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 96.14
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 96.12
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 96.12
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 96.12
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 96.11
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 96.11
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 96.11
2vli_A183 Antibiotic resistance protein; transferase, tunica 96.11
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 96.1
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 96.09
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 96.09
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 96.09
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 96.09
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 96.08
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 96.08
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 96.07
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 96.06
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 96.06
3tlx_A243 Adenylate kinase 2; structural genomics, structura 96.05
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 96.04
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 96.04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 96.03
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 96.02
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 96.02
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 95.99
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 95.98
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 95.98
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 95.97
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 95.96
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 95.95
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 95.93
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 95.93
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 95.93
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 95.92
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 95.91
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 95.91
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 95.91
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 95.86
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 95.86
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 95.86
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 95.85
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 95.84
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 95.81
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 95.79
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 95.78
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 95.77
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 95.77
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 95.77
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 95.76
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 95.75
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 95.75
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 95.75
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 95.74
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 95.74
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 95.73
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 95.73
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 95.73
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 95.72
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 95.71
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 95.71
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 95.71
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 95.71
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 95.7
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 95.7
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 95.69
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 95.69
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 95.67
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 95.66
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 95.65
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 95.64
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 95.64
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 95.63
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 95.63
2j37_W 504 Signal recognition particle 54 kDa protein (SRP54) 95.63
3r20_A233 Cytidylate kinase; structural genomics, seattle st 95.63
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 95.61
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 95.61
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 95.6
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 95.57
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 95.57
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 95.54
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 95.52
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 95.51
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 95.44
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 95.44
2og2_A359 Putative signal recognition particle receptor; nuc 95.43
3r20_A233 Cytidylate kinase; structural genomics, seattle st 95.39
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 95.38
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 95.38
3b6e_A216 Interferon-induced helicase C domain-containing P; 95.37
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 95.36
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 95.36
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 95.35
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 95.35
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 95.35
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 95.34
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 95.33
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 95.31
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 95.29
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 95.28
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 95.27
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 95.27
2xxa_A433 Signal recognition particle protein; protein trans 95.27
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 95.26
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 95.25
1p9r_A418 General secretion pathway protein E; bacterial typ 95.25
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 95.21
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 95.21
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 95.18
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 95.18
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 95.17
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 95.17
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 95.14
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 95.12
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 95.12
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 95.12
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 95.09
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 95.09
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 95.07
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 95.05
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 95.04
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 95.03
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 95.03
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 95.02
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 95.02
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 95.0
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 94.99
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 94.99
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 94.99
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 94.97
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 94.97
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 94.95
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 94.93
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 94.93
2oap_1511 GSPE-2, type II secretion system protein; hexameri 94.93
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 94.92
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 94.89
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 94.89
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 94.88
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 94.88
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 94.88
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 94.87
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 94.86
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 94.84
1ltq_A301 Polynucleotide kinase; phosphatase, alpha/beta, P- 94.82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
Probab=100.00  E-value=6.8e-85  Score=772.14  Aligned_cols=545  Identities=34%  Similarity=0.542  Sum_probs=428.6

Q ss_pred             CCccccccCchhHHHHHHHHHHhhcCCCcchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHhccCCceeeEEEEEec
Q 003743          215 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC  294 (799)
Q Consensus       215 ~~~~~~l~g~~~~~~~i~~~l~~~l~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la~alA~~l~~~~~~~~~~~~v~~  294 (799)
                      ...|++|+|++.+++.|.+.+...+.  .++.|..+|+.+|++||||||||||||++|+++|++++      .+++.++|
T Consensus       200 ~v~~~dIgGl~~~~~~l~e~v~~pl~--~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~~  271 (806)
T 3cf2_A          200 EVGYDDIGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING  271 (806)
T ss_dssp             SCCGGGCCSCCTTHHHHHHHHHHHHH--CCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEEH
T ss_pred             CCChhhhcCHHHHHHHHHHHHHHHcc--CHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CeEEEEEh
Confidence            56799999999999999998866555  67899999999999999999999999999999999999      89999999


Q ss_pred             ccccccchhhHHHHHHHHHHHHHhcCCcEEEEccccccccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccCCCC
Q 003743          295 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP  374 (799)
Q Consensus       295 s~l~~~~~~~~~~~l~~~~~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~~~~~l~~~Ll~~ld~~~~~~~~~~~~~~  374 (799)
                      +++...+.+.....++.+|..|....|+||||||||.+++.+....+.    ....+...|+..||++....       +
T Consensus       272 ~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~----~~~riv~~LL~~mdg~~~~~-------~  340 (806)
T 3cf2_A          272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE----VERRIVSQLLTLMDGLKQRA-------H  340 (806)
T ss_dssp             HHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCT----THHHHHHHHHTHHHHCCGGG-------C
T ss_pred             HHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCCh----HHHHHHHHHHHHHhcccccC-------C
Confidence            999999999999999999999999999999999999999766543322    23467888999999876543       4


Q ss_pred             EEEEEecCCCCccchhhhccCceeEEEeccCCCHHHHHHHHHHHhhhcccCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 003743          375 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV  454 (799)
Q Consensus       375 v~vI~ttn~~~~ld~aL~r~gRf~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~  454 (799)
                      |+||++||+++.+|++|+|||||+++|+++.|+..+|.+||+.+++...+. .+..+..++..++||+++||..+|++|+
T Consensus       341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~  419 (806)
T 3cf2_A          341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA  419 (806)
T ss_dssp             EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988765543 3334889999999999999999999999


Q ss_pred             HHHhcccccCCC------cccccccccceecccchhcccccccccccccccccCCCCCCCCCCCChHHHHHHHHHHhhcc
Q 003743          455 HAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP  528 (799)
Q Consensus       455 ~~a~~r~~~~~~------~~~~~~~~~l~~edf~~al~~~~p~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~  528 (799)
                      +.|++|......      ..+......++.+||..|+..+.|+..++.....   +...|++++|++++++.|.+.+.+|
T Consensus       420 ~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~---p~v~w~diggl~~~k~~l~e~v~~p  496 (806)
T 3cf2_A          420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV---PQVTWEDIGGLEDVKRELQELVQYP  496 (806)
T ss_dssp             HHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBC---CCCCSTTCCSCHHHHHHHTTTTTTT
T ss_pred             HHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccC---CCCCHHHhCCHHHHHHHHHHHHHhh
Confidence            999887542111      1111123567889999999999999888765443   4589999999999999999999999


Q ss_pred             CCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhhhcccHHHHHHHHHHhHhcCCeEEEE
Q 003743          529 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF  608 (799)
Q Consensus       529 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~~g~se~~i~~~f~~a~~~~p~ILfi  608 (799)
                      +++++.|...+..+++++|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++++|..|+..+||||||
T Consensus       497 ~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iifi  576 (806)
T 3cf2_A          497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF  576 (806)
T ss_dssp             TTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEEC
T ss_pred             hhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCC---CCCchhhHHHHHHHhhccCccccCcEEEEEecCCCCccChhhcCCCCcceeeecCCCCHHHHHHH
Q 003743          609 DEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI  685 (799)
Q Consensus       609 DEid~l~~~r~~---~~~~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~r~~I  685 (799)
                      ||||+++++|+.   +..+..+|++++||++||++....+|+||+|||+|+.||+|++|||||+++|+||+|+.++|.+|
T Consensus       577 DEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~i  656 (806)
T 3cf2_A          577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI  656 (806)
T ss_dssp             SCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHT
T ss_pred             hhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHH
Confidence            999999999864   34557789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCC--------------CCCCCCCcccHHHH
Q 003743          686 LKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--------------NEPGKMPVITDALL  751 (799)
Q Consensus       686 l~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~--------------~~~~~~~~it~e~l  751 (799)
                      |+.++++.++..++|++.||+.++||||+||.++|++|++.|+++.+.....              ......+.|+.+||
T Consensus       657 l~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df  736 (806)
T 3cf2_A          657 LKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF  736 (806)
T ss_dssp             TTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CC
T ss_pred             HHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHH
Confidence            9999999999999999999999999999999999999999999987653211              11223457999999


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCC
Q 003743          752 KSIASKARPSVSEAEKLRLYSIYGQFLDSKK  782 (799)
Q Consensus       752 ~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~  782 (799)
                      .+|++.++||++++++++|++|..+|.++|.
T Consensus       737 ~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~  767 (806)
T 3cf2_A          737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRG  767 (806)
T ss_dssp             TTTC---------------CCCC--------
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999999999999999885
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 799
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 5e-84
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 3e-24
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 6e-82
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 7e-26
d1r7ra3265 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p 9e-66
d1r7ra3265 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p 5e-15
d1e32a2258 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p 1e-52
d1e32a2258 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p 2e-16
d1w44a_321 c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta 2e-48
d1w44a_321 c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta 3e-11
d1d2na_246 c.37.1.20 (A:) Hexamerization domain of N-ethylmal 4e-30
d1d2na_246 c.37.1.20 (A:) Hexamerization domain of N-ethylmal 7e-09
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 1e-27
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 3e-07
d1gvnb_273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 2e-26
d1gvnb_273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 8e-10
d1ixsb2239 c.37.1.20 (B:4-242) Holliday junction helicase Ruv 9e-20
d1ixsb2239 c.37.1.20 (B:4-242) Holliday junction helicase Ruv 7e-08
d1fnna2276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 1e-16
d1fnna2276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 4e-07
d1ofha_309 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 2e-16
d1ofha_309 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 5e-08
d1in4a2238 c.37.1.20 (A:17-254) Holliday junction helicase Ru 1e-09
d1in4a2238 c.37.1.20 (A:17-254) Holliday junction helicase Ru 2e-06
d1sxja2253 c.37.1.20 (A:295-547) Replication factor C1 {Baker 1e-08
d1sxja2253 c.37.1.20 (A:295-547) Replication factor C1 {Baker 2e-04
d1njfa_239 c.37.1.20 (A:) delta prime subunit of DNA polymera 4e-07
d1a5ta2207 c.37.1.20 (A:1-207) delta prime subunit of DNA pol 2e-06
d2fnaa2283 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo 2e-06
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 3e-05
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 5e-05
d1qvra2387 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus 2e-04
d2i3ba1189 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 3e-04
d1g8pa_333 c.37.1.20 (A:) ATPase subunit of magnesium chelata 3e-04
d2bdta1176 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B 4e-04
d1yj5a2172 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p 5e-04
d1lw7a2192 c.37.1.1 (A:220-411) Transcriptional regulator Nad 6e-04
d1sxje2252 c.37.1.20 (E:4-255) Replication factor C5 {Baker's 7e-04
d1qhxa_178 c.37.1.3 (A:) Chloramphenicol phosphotransferase { 7e-04
d2gnoa2198 c.37.1.20 (A:11-208) gamma subunit of DNA polymera 8e-04
d1ckea_225 c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 8e-04
d1r6bx2268 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A 9e-04
d1sxjd2237 c.37.1.20 (D:26-262) Replication factor C2 {Baker' 0.001
d1kaga_169 c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia 0.001
d1rkba_173 c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien 0.001
d1ly1a_152 c.37.1.1 (A:) Polynucleotide kinase, kinase domain 0.001
d1y63a_174 c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma 0.002
d1khta_190 c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco 0.002
d1m8pa3183 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d 0.002
d1zp6a1176 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { 0.002
d1g41a_443 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 0.002
d1g41a_ 443 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 0.002
d1zaka1189 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai 0.002
d1uaaa1306 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escheri 0.003
d1knqa_171 c.37.1.17 (A:) Gluconate kinase {Escherichia coli 0.003
d1q3ta_223 c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae 0.003
d2iyva1165 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba 0.003
d1nksa_194 c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu 0.003
d1iqpa2231 c.37.1.20 (A:2-232) Replication factor C {Archaeon 0.004
d1bifa1213 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct 0.004
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  265 bits (680), Expect = 5e-84
 Identities = 90/226 (39%), Positives = 131/226 (57%), Gaps = 4/226 (1%)

Query: 508 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 567
           + DV G  + +  + E++E   + P+ F +   ++   VL+ GPPG GKT +  A A   
Sbjct: 11  FADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69

Query: 568 SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--- 624
            + F ++ G + +  ++G     VRD+F +A  AAPC++F DE D++  +RG    G   
Sbjct: 70  KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129

Query: 625 VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 684
             ++ +NQ L E+DG E   G+ V AAT+RPD+LD ALLRPGR DR +    P  R R  
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189

Query: 685 ILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHE 730
           ILKV  R++PLA D+D   IA  T GFSGADL  L+++A L A   
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387 Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225 Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173 Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190 Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189 Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Length = 306 Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223 Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165 Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194 Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query799
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 100.0
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 100.0
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 100.0
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 100.0
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 99.92
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.89
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.87
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.84
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.84
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 99.82
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.81
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.81
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.78
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.77
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.74
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.72
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.72
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.72
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.7
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.7
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.69
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.68
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.67
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.65
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.65
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.65
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.65
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.62
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.57
d1svma_362 Papillomavirus large T antigen helicase domain {Si 99.57
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.56
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.56
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.55
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.53
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.52
d1svma_362 Papillomavirus large T antigen helicase domain {Si 99.51
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 99.51
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 99.48
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.48
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.47
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 99.46
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.45
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.43
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.43
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 99.36
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 99.36
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.34
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 99.33
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.32
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.32
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.32
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 99.2
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 99.13
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.1
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 99.08
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 99.02
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 98.94
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.85
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 98.79
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 98.69
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.53
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 98.36
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.19
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.16
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 98.05
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.78
d1tuea_205 Replication protein E1 helicase domain {Human papi 97.76
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 97.64
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 97.63
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.63
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 97.52
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 97.51
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.51
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.48
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 97.41
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 97.39
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 97.38
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 97.35
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.34
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 97.34
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 97.34
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 97.32
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 97.29
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 97.28
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 97.25
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 97.25
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 97.23
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 97.22
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 97.21
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 97.2
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 97.18
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 97.18
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 97.17
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 97.16
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 97.14
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 97.14
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 97.14
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 97.13
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 97.12
d1okkd2207 GTPase domain of the signal recognition particle r 97.11
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 97.11
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 97.09
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.07
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 97.06
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 97.05
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 97.04
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 97.02
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 97.0
d2qy9a2211 GTPase domain of the signal recognition particle r 97.0
d1okkd2207 GTPase domain of the signal recognition particle r 96.99
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.98
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 96.96
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.96
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 96.96
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.95
d2qy9a2211 GTPase domain of the signal recognition particle r 96.95
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 96.93
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 96.91
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 96.9
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 96.9
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 96.86
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 96.86
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 96.86
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 96.84
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.83
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.83
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 96.82
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 96.82
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.82
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 96.81
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 96.78
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 96.78
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 96.77
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 96.77
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.77
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 96.75
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.75
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 96.74
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 96.74
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.73
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 96.73
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.71
d2awna2232 Maltose transport protein MalK, N-terminal domain 96.71
d1g2912240 Maltose transport protein MalK, N-terminal domain 96.69
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 96.67
d1vmaa2213 GTPase domain of the signal recognition particle r 96.66
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 96.66
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 96.65
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 96.64
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 96.63
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 96.62
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 96.61
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 96.61
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 96.6
d1tuea_205 Replication protein E1 helicase domain {Human papi 96.59
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 96.59
d1vmaa2213 GTPase domain of the signal recognition particle r 96.56
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 96.55
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.54
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 96.53
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 96.52
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.5
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 96.49
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 96.45
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 96.43
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 96.42
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 96.41
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 96.38
d2hyda1255 Putative multidrug export ATP-binding/permease pro 96.3
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 96.29
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 96.29
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 96.29
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 96.27
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 96.26
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 96.25
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 96.23
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 96.23
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 96.2
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 96.14
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 96.12
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 96.11
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 96.07
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 96.01
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 96.01
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 95.93
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 95.92
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 95.9
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 95.89
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 95.87
d2hyda1255 Putative multidrug export ATP-binding/permease pro 95.85
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 95.84
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 95.84
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 95.83
d1g2912240 Maltose transport protein MalK, N-terminal domain 95.83
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 95.83
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 95.83
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 95.81
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 95.75
d2awna2232 Maltose transport protein MalK, N-terminal domain 95.71
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 95.71
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 95.67
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 95.66
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 95.65
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 95.52
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 95.48
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 95.46
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 95.46
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 95.43
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 95.42
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 95.37
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 95.36
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 95.31
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 95.3
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 95.27
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 95.26
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 95.2
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 95.17
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 95.15
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 95.11
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 94.91
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 94.87
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 94.76
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 94.72
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 94.69
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 94.61
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 94.56
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 94.51
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 94.49
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 94.48
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 94.45
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 94.44
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 94.36
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 94.35
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 94.18
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 94.11
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 94.08
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 94.02
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 93.99
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 93.98
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 93.94
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 93.93
d2fh5b1207 Signal recognition particle receptor beta-subunit 93.88
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 93.87
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 93.87
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 93.77
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 93.74
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 93.69
d2fh5b1207 Signal recognition particle receptor beta-subunit 93.67
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 93.66
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 93.64
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 93.62
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 93.61
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 93.59
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 93.59
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 93.56
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 93.44
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 93.42
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 93.35
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 93.24
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 93.2
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 93.17
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 93.14
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 93.12
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 93.02
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 93.02
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 92.98
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 92.95
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 92.93
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 92.91
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 92.88
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 92.87
d1nrjb_209 Signal recognition particle receptor beta-subunit 92.85
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 92.72
d1nrjb_209 Signal recognition particle receptor beta-subunit 92.67
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 92.67
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 92.59
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 92.5
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 92.49
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 92.46
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 92.43
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 92.4
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 92.39
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 92.37
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 92.34
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 92.29
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 92.29
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 92.26
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 92.24
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 92.19
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 92.14
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 92.14
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 92.1
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 92.09
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 92.09
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 92.08
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 92.05
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 92.03
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 91.96
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 91.95
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 91.91
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 91.88
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 91.86
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 91.76
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 91.72
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 91.69
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 91.69
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 91.68
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 91.59
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 91.58
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 91.58
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 91.54
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 91.54
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 91.49
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 91.44
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 91.41
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 91.38
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 91.28
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 91.27
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 91.26
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 91.23
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 91.22
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 91.19
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 91.19
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 91.19
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 91.14
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 91.13
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 91.11
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 91.1
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 90.96
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 90.95
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 90.9
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 90.9
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 90.89
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 90.87
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 90.81
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 90.78
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 90.73
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 90.71
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 90.7
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 90.66
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 90.64
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 90.63
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 90.61
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 90.6
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 90.58
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 90.56
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 90.56
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 90.53
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 90.5
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 90.44
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 90.39
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 90.34
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 90.2
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 90.19
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 90.19
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 90.19
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 90.09
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 90.08
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 89.9
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 89.9
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 89.84
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 89.8
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 89.67
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 89.5
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 89.42
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 89.38
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 89.29
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 89.22
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 89.22
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 89.21
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 89.12
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 89.1
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 89.09
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 89.01
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 88.99
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 88.98
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 88.96
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 88.83
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 88.8
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 88.78
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 88.75
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 88.73
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 88.71
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 88.63
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 88.63
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 88.57
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 88.49
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 88.38
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 88.38
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 88.3
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 88.28
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 88.27
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 88.27
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 88.26
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 88.08
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 87.99
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 87.94
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 87.77
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 87.76
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 87.71
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 87.7
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 87.57
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 87.57
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 87.53
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 87.52
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 87.5
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 87.42
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 87.28
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 87.27
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 87.15
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 87.15
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 87.06
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 87.03
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 87.0
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 86.99
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 86.94
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 86.83
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 86.79
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 86.78
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 86.77
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 86.76
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 86.68
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 86.58
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 86.5
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 86.47
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 86.34
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 86.29
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 86.26
d1xpua3289 Transcription termination factor Rho, ATPase domai 86.25
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 86.21
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 86.19
d1e9ra_ 433 Bacterial conjugative coupling protein TrwB {Esche 86.16
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 86.1
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 86.1
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 86.02
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 85.94
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 85.86
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 85.73
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 85.69
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 85.53
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 85.38
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 85.36
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 85.29
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 85.2
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 85.19
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 85.14
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 85.11
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 84.97
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 84.87
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 84.84
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 84.8
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 84.77
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 84.54
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 84.53
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 84.41
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 84.33
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 84.2
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 84.16
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 84.09
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 84.01
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 83.91
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 83.79
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 83.73
d1xpua3289 Transcription termination factor Rho, ATPase domai 83.71
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 83.5
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 83.45
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 83.35
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 83.2
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 83.01
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 82.84
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 82.74
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 82.69
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 82.62
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 82.04
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 81.91
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 81.9
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 81.81
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 81.44
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 81.19
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 81.14
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 80.86
d1t5la1 413 Nucleotide excision repair enzyme UvrB {Bacillus c 80.71
d1p6xa_333 Thymidine kinase {Equine herpesvirus type 4 [TaxId 80.56
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 80.37
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 80.13
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-42  Score=360.86  Aligned_cols=244  Identities=37%  Similarity=0.649  Sum_probs=220.3

Q ss_pred             CCCCCCCCCChHHHHHHHHHHhhccCCChhHHhhCCCCCCCceeeecCCCCcHHHHHHHHHHhCCCeEEEEeccchhhhh
Q 003743          504 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY  583 (799)
Q Consensus       504 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~alA~~~~~~~i~i~~~~l~~~~  583 (799)
                      +.++|+|++|++++++.|.+.+.. +.+++.|...|..+++++|||||||||||++|+++|++++.+++.++++++.++|
T Consensus         7 ~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~   85 (256)
T d1lv7a_           7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF   85 (256)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred             CCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcc
Confidence            457899999999999999998764 7788999999999999999999999999999999999999999999999999999


Q ss_pred             hcccHHHHHHHHHHhHhcCCeEEEEcccccccCCCCCCCC---chhhHHHHHHHhhccCccccCcEEEEEecCCCCccCh
Q 003743          584 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA  660 (799)
Q Consensus       584 ~g~se~~i~~~f~~a~~~~p~ILfiDEid~l~~~r~~~~~---~~~~r~~~~ll~~ld~~~~~~~vlvi~ttn~~~~ld~  660 (799)
                      +|+++..++.+|+.|+...||||||||+|.+++.|+....   ....+++++|+..||++...++++||||||+|+.+|+
T Consensus        86 ~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~  165 (256)
T d1lv7a_          86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP  165 (256)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred             hhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCH
Confidence            9999999999999999999999999999999988765432   3456789999999999988889999999999999999


Q ss_pred             hhcCCCCcceeeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 003743          661 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP  740 (799)
Q Consensus       661 al~r~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~  740 (799)
                      +++|||||++.|+|++|+.++|.+||+.++++.++..++++..|+..++||+|+||.++|++|+..|+++          
T Consensus       166 al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~----------  235 (256)
T d1lv7a_         166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----------  235 (256)
T ss_dssp             GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred             hHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----------
Confidence            9999999999999999999999999999999999989999999999999999999999999998888754          


Q ss_pred             CCCCcccHHHHHHHHhhcC
Q 003743          741 GKMPVITDALLKSIASKAR  759 (799)
Q Consensus       741 ~~~~~it~e~l~~a~~~~~  759 (799)
                       ....|+.+||..|+.++-
T Consensus       236 -~~~~i~~~d~~~Al~rv~  253 (256)
T d1lv7a_         236 -NKRVVSMVEFEKAKDKIM  253 (256)
T ss_dssp             -TCSSBCHHHHHHHHHHHT
T ss_pred             -CCCccCHHHHHHHHHHHh
Confidence             234689999999998753
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure