Citrus Sinensis ID: 003794

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-----
MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYDQEKTWNTPPNGIDRLHQAKK
ccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcEEEEEcccccccEEEccEEEEEEEEEccccccccccccccccccccccccEEEccccEEEEEEccccccccccccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHccccccccccEEEcccccHHHHHcccccccccccccEEEEccccHHHHHHHHHHHHcccccEEEEEEEEEccccccHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHcccccccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccEEEEEEEEEEEEEccccccccEEEEEccccccEEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccHHHHcc
ccccccccEccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccHHHHHEEEEEEcccccccccccccEccccccccccccccccccccEEEEEEEcHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHEccHHcccEEEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEccccccccccccEEEEccccHHHHHHHHHHHcccccEEEEEEEEEccccHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEccccccEEEcccHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccHHHHEEEEEEEEccEccccccccEEEccccccEEEEEcccHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHEEEccccccccEEEEEEEEEEEEccEccccEEEEEcccccEEEEEEcccHHHHHHHHHHHHccccccEEEEcHHHHHHHHccccccccccHHccc
mmnrddipvgvggeggilpngtilpdvggyqpiidqgmstagecryrqaipvgqrlyvntnyglrkaflpqggrkyaplrqpTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGgairsdcfnstnssqseqcdsignlypddsnpyaefnifsdpfaaytvlhsgipvtiipldatktipvsenFFVEFERRQNTYEAQYCFQSLKMIrdtwsgsppfheaycmWDSFMAGVALSIMLnssshngenacsemEYMNLTvvtsnepygisdgsnplidglevpkfnvqkngvhsghvqtgmqdpfclesgkakcqdgyikevkgpEAVRVLVATkakpsqdlgslLEKEFYLSFLNalnfpqqagrfnistqfpyyeeilrkpdfgkklmgkpvvfdidmSAGDFLALIYLLKLPVELINLKGilvsstgwatsaTVDVVYDLLHMmgrddipvglgdvfavgevnpkfppiggckyakaiplgsggfldsdtlyglardlprsprrytaensvrfgasqdnddpelrqpLAVDVWKSIVEsiepgskitiltngpltnlaqiiglqnsssviQDVYIvggnkgqdnekgnvftvpsskyaefnmfldPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLrdrkktpesvFSQRLLQGLMTLqqshhsyhhvDTFLGEVLGAVIlggnphlnqtykiksleiisdgdiskvGQIIVNQEQGKLVKVLESLNVAVYYDHFAEvlgdhkqsavigsfydqektwntppngidrlHQAKK
mmnrddipvgvggeggilpnGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVATkakpsqdlgSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIlvsstgwatSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAensvrfgasqdnddpelRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGgnkgqdnekgNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHklrdrkktpesVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYdqektwntppngidrlhqakk
MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYDQEKTWNTPPNGIDRLHQAKK
********VGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFN************IGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLN********ACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLAR*******************************LAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRK***ESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYDQEKTW***************
*MNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVAT*****************LSFLNALNFPQQAGRFNISTQFPYYEE***********MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSA***************************
MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFN*********CDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYDQEKTWNTPPNGIDRLHQAKK
***RDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYDQEKTWNT*************
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MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLESGKAKCQDGYIKEVKGPEAVRVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYDQEKTWNTPPNGIDRLHQAKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query795 2.2.26 [Sep-21-2011]
B1KHA5312 Pyrimidine-specific ribon yes no 0.169 0.432 0.319 3e-09
B7LKV4311 Pyrimidine-specific ribon yes no 0.138 0.353 0.350 1e-08
Q8ZQY4311 Pyrimidine-specific ribon yes no 0.119 0.305 0.343 1e-08
B4TB65311 Pyrimidine-specific ribon yes no 0.119 0.305 0.343 1e-08
B5R809311 Pyrimidine-specific ribon yes no 0.138 0.353 0.343 1e-08
B5QVR2311 Pyrimidine-specific ribon yes no 0.138 0.353 0.343 1e-08
A7ZXS0311 Pyrimidine-specific ribon yes no 0.138 0.353 0.350 1e-08
Q8Z8H0311 Pyrimidine-specific ribon N/A no 0.119 0.305 0.343 1e-08
A9MUJ0311 Pyrimidine-specific ribon yes no 0.119 0.305 0.343 1e-08
B1IYF7311 Pyrimidine-specific ribon yes no 0.138 0.353 0.343 2e-08
>sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rihA PE=3 SV=1 Back     alignment and function desciption
 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 72/166 (43%), Gaps = 31/166 (18%)

Query: 51  PVGQRLYVNTNY----GLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGS 104
           P+ + L +  N     GL    LP     +AP +  TA +++   I  S  P+T+   G 
Sbjct: 70  PLARELIIADNVHGETGLDGPVLPD--PSFAP-QAMTAVELMALKIKQSQAPVTLVPTGP 126

Query: 105 HTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAE 164
            TN A+ L  +P L  NIE I +MGGA                   +GN       P AE
Sbjct: 127 LTNIALLLATHPELHSNIEQIVLMGGAA-----------------GVGNW-----TPAAE 164

Query: 165 FNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQN 210
           FNIF DP AA  V  +GIP+T+  LD T    V +         +N
Sbjct: 165 FNIFVDPEAADMVFKAGIPITMCGLDVTHQAQVMDEDIARIRAIEN 210
Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively.
Shewanella woodyi (strain ATCC 51908 / MS32) (taxid: 392500)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -
>sp|B7LKV4|RIHA_ESCF3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|Q8ZQY4|RIHA_SALTY Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|B4TB65|RIHA_SALHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella heidelberg (strain SL476) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|B5R809|RIHA_SALG2 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|B5QVR2|RIHA_SALEP Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella enteritidis PT4 (strain P125109) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|A7ZXS0|RIHA_ECOHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O9:H4 (strain HS) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|Q8Z8H0|RIHA_SALTI Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhi GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|A9MUJ0|RIHA_SALPB Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|B1IYF7|RIHA_ECOLC Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rihA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query795
359487958 909 PREDICTED: uncharacterized protein LOC10 0.978 0.855 0.673 0.0
255551579885 inosine-uridine preferring nucleoside hy 0.986 0.885 0.665 0.0
297736939893 unnamed protein product [Vitis vinifera] 0.986 0.877 0.645 0.0
225432438 1054 PREDICTED: uncharacterized protein LOC10 0.986 0.743 0.645 0.0
357447543882 Pyrimidine-specific ribonucleoside hydro 0.981 0.884 0.635 0.0
298205015858 unnamed protein product [Vitis vinifera] 0.953 0.883 0.661 0.0
224144494872 predicted protein [Populus trichocarpa] 0.966 0.880 0.637 0.0
224100283 921 predicted protein [Populus trichocarpa] 0.993 0.857 0.613 0.0
357478551888 Pyrimidine-specific ribonucleoside hydro 0.987 0.884 0.610 0.0
356564566878 PREDICTED: uncharacterized protein LOC10 0.983 0.890 0.628 0.0
>gi|359487958|ref|XP_002264143.2| PREDICTED: uncharacterized protein LOC100245166 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1082 bits (2799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/789 (67%), Positives = 637/789 (80%), Gaps = 11/789 (1%)

Query: 1   MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQR--LYV 58
           MM RDDIPVGVGGEGGILPNGTILPDVGGY PIIDQG STAG CRYRQAIP+G +  L +
Sbjct: 94  MMGRDDIPVGVGGEGGILPNGTILPDVGGYLPIIDQGTSTAGGCRYRQAIPMGAKGLLDI 153

Query: 59  NTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHL 118
           +T YGLRK FLPQG R Y+PL QPTAQQV+INA+SAGPITVF++G+HTNFAIFLM NP L
Sbjct: 154 DTMYGLRKGFLPQGSRGYSPLEQPTAQQVMINAVSAGPITVFLLGTHTNFAIFLMTNPQL 213

Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
           KKNIEHIYVMGG+I   C    N+S+ E+C +IGNL+P D NPYAEFN F DPFAAY VL
Sbjct: 214 KKNIEHIYVMGGSIWPHC-PKKNNSRPEECGNIGNLFPGDDNPYAEFNFFEDPFAAYEVL 272

Query: 179 HSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238
           HSGIPVT+IPLDAT TIP++ENFF  FE++QNTYEAQY F+++KM  DTW  +  FHE  
Sbjct: 273 HSGIPVTLIPLDATNTIPITENFFKAFEQKQNTYEAQYSFKAMKMAHDTWFNNH-FHENV 331

Query: 239 CMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDGSNPLIDGLEVP 298
            MWD FM GVALSIM NS++ NGEN  + MEY N+TVVTSNEPYGISDGSNP  DG    
Sbjct: 332 FMWDYFMVGVALSIMRNSANDNGENEFAVMEYTNITVVTSNEPYGISDGSNPFNDGSTTS 391

Query: 299 KFNVQKNGVHSGHVQTGMQDPFCLESG-KAKCQDGYIKEVKGPEAVRVLVATKAKPSQDL 357
           KF   KNGVHSGHVQTG +DPFCLE   K +C+DGY  EV GP++VRVLVAT+AK +QD 
Sbjct: 392 KF---KNGVHSGHVQTGNRDPFCLEKNQKGRCKDGYTMEVTGPDSVRVLVATEAKRNQDA 448

Query: 358 GSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKKLMGKPVVFDIDMSA 417
            SLL++EFY SFL+ ++ PQQ+GRFNISTQFPYY EI+ KPDFG +  GKP VFD+DMS 
Sbjct: 449 NSLLDREFYKSFLDVISRPQQSGRFNISTQFPYYGEIVYKPDFGTRKKGKPFVFDMDMST 508

Query: 418 GDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAV 477
           GD +AL+YLLKLPVE I+LKGILVS  GWA++AT+D+VYD+LHMMGRDDIPVGLGDVFA+
Sbjct: 509 GDLIALLYLLKLPVEQIDLKGILVSPNGWASAATIDIVYDVLHMMGRDDIPVGLGDVFAI 568

Query: 478 GEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDN 537
           G+    FP  G CKY KAIPLG GG LDSDTLYG ARDLPRSPRRYTAENSV+FGA +D 
Sbjct: 569 GQKEQTFPLFGDCKYRKAIPLGGGGLLDSDTLYGFARDLPRSPRRYTAENSVKFGAPRDT 628

Query: 538 DDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGN 597
           D PE+RQPLA++VWKSIV+S +PGSKIT LTNGPLTNLAQ+I  + +SSVIQD+ IVGG+
Sbjct: 629 DHPEVRQPLALEVWKSIVDSTDPGSKITYLTNGPLTNLAQVISSERASSVIQDLCIVGGH 688

Query: 598 KGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHK 657
              DN+ GN+FTVPS+++AEFNMFLDPLA K V +SKL + LIPL +QR V+SF  +L +
Sbjct: 689 I--DNKTGNLFTVPSNEFAEFNMFLDPLAVKVVMDSKLNVTLIPLGVQRSVSSFNHVLQR 746

Query: 658 LRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGG-NPHLNQTYKIK 716
           L  + +TPE+ F+Q LL  L  LQQ    YHH+DTFLGE+LGAV+L G +P LNQ ++  
Sbjct: 747 LEHKNQTPEAAFTQNLLSRLSQLQQKSDRYHHMDTFLGEILGAVVLAGDDPLLNQAFQHM 806

Query: 717 SLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLGDHKQSAVIGSFYDQ 776
            L+I+++GD+   GQI+++++QG+LVKVL S+N   YYDHFA+VL +  QSA IG+F +Q
Sbjct: 807 PLKILANGDVKNDGQIVIDEKQGRLVKVLRSVNTTEYYDHFADVLNNQSQSARIGNFAEQ 866

Query: 777 EKTWNTPPN 785
           ++ W TPPN
Sbjct: 867 KRIWTTPPN 875

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551579|ref|XP_002516835.1| inosine-uridine preferring nucleoside hydrolase, putative [Ricinus communis] gi|223543923|gb|EEF45449.1| inosine-uridine preferring nucleoside hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297736939|emb|CBI26140.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432438|ref|XP_002277102.1| PREDICTED: uncharacterized protein LOC100263026 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357447543|ref|XP_003594047.1| Pyrimidine-specific ribonucleoside hydrolase rihA [Medicago truncatula] gi|355483095|gb|AES64298.1| Pyrimidine-specific ribonucleoside hydrolase rihA [Medicago truncatula] Back     alignment and taxonomy information
>gi|298205015|emb|CBI34322.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144494|ref|XP_002336154.1| predicted protein [Populus trichocarpa] gi|222874440|gb|EEF11571.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224100283|ref|XP_002311814.1| predicted protein [Populus trichocarpa] gi|222851634|gb|EEE89181.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357478551|ref|XP_003609561.1| Pyrimidine-specific ribonucleoside hydrolase rihB [Medicago truncatula] gi|355510616|gb|AES91758.1| Pyrimidine-specific ribonucleoside hydrolase rihB [Medicago truncatula] Back     alignment and taxonomy information
>gi|356564566|ref|XP_003550523.1| PREDICTED: uncharacterized protein LOC100788041 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query795
TAIR|locus:2144910890 NSH3 "AT5G18860" [Arabidopsis 0.986 0.880 0.607 5.9e-263
TAIR|locus:2144950550 NSH4 "nucleoside hydrolase 4" 0.661 0.956 0.589 3e-165
TAIR|locus:2144925258 NSH5 "AT5G18870" [Arabidopsis 0.210 0.647 0.646 4e-58
POMBASE|SPBC1683.06c310 SPBC1683.06c "uridine ribohydr 0.130 0.335 0.348 2.5e-07
UNIPROTKB|P41409311 rihA [Escherichia coli K-12 (t 0.111 0.286 0.339 1.7e-06
TIGR_CMR|SO_0811318 SO_0811 "inosine-uridine prefe 0.133 0.333 0.273 7.7e-06
UNIPROTKB|G4MNZ6384 MGG_05660 "Uridine nucleosidas 0.192 0.398 0.303 2.2e-05
TAIR|locus:2032008322 URH2 "uridine-ribohydrolase 2" 0.176 0.434 0.281 3.1e-05
POMBASE|SPAC17G8.02330 SPAC17G8.02 "uridine ribohydro 0.300 0.724 0.277 5.9e-05
POMBASE|SPBC800.11389 SPBC800.11 "inosine-uridine pr 0.259 0.529 0.248 6.3e-05
TAIR|locus:2144910 NSH3 "AT5G18860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2530 (895.7 bits), Expect = 5.9e-263, P = 5.9e-263
 Identities = 489/805 (60%), Positives = 621/805 (77%)

Query:     1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIP--VGQRLYV 58
             MM+RDDIPVGVGGEGGI  +GTI  DVGGY PII+QGM+T GECRYRQAIP  +G  L +
Sbjct:    87 MMDRDDIPVGVGGEGGISDDGTIHSDVGGYFPIIEQGMTTTGECRYRQAIPKGLGGLLDI 146

Query:    59 NTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHL 118
             ++NYG RK FLPQG R+Y PL+QPTAQ+V+++ IS GP TV ++GSHTNFA+FLM+NPHL
Sbjct:   147 DSNYGFRKQFLPQGNRRYTPLQQPTAQKVIVDKISEGPTTVILLGSHTNFALFLMSNPHL 206

Query:   119 KKNIEHIYVMGGAIRSD----CF--NSTNSS-QSEQCDSIGNLYPD-DSNPYAEFNIFSD 170
             K NI+HIY+MGG +RS     C   NST +  Q  QC + GNL+ D  SNPY+EFNIF+D
Sbjct:   207 KHNIQHIYIMGGGVRSQNPTGCCPANSTVAECQPRQCGNRGNLFTDYTSNPYSEFNIFAD 266

Query:   171 PFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERR-QNTYEAQYCFQSLKMIRDTWS 229
             PFAAY V HSG+PVT++PLDAT TIP+++ FF  FE   Q TYEAQY F SLK+ RDTW 
Sbjct:   267 PFAAYQVFHSGVPVTLVPLDATNTIPINQKFFETFENNYQRTYEAQYVFLSLKIARDTWF 326

Query:   230 GSPPFHEAYCMWDSFMAGVALSIMLNSSSHN---GENACSEMEYMNLTVVTSNEPYGISD 286
                 F+++Y MWDSF AGVA+SIM NS++ N   GEN  +EMEYMN+TVVTSN+PYG SD
Sbjct:   327 DDE-FYKSYFMWDSFTAGVAVSIMRNSANKNNKNGENDFAEMEYMNITVVTSNKPYGRSD 385

Query:   287 GSNPLIDGLEVPKFNVQKNGVHSGHVQTGMQDPFCLES---GKAKCQDGYIKEVKGPEAV 343
             GSNP  D    PKFN+   GVHSGHVQTG++DP CL     G+ KC+DGY +E+ G ++V
Sbjct:   386 GSNPFFDNRRTPKFNLALGGVHSGHVQTGLRDPTCLPKSGIGRGKCKDGYTQEISGSDSV 445

Query:   344 RVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNISTQFPYYEEILRKPDFGKK 403
             RVLVAT+AKP+ ++ S L++EFY+ FL  LN P++ GRFN S+QFPYY+E L +PD  K 
Sbjct:   446 RVLVATRAKPNINIKSKLDREFYVDFLEVLNRPEETGRFNFSSQFPYYKEELFRPDLSKT 505

Query:   404 LMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMG 463
               GKPVVFD+DMSAGDFL+L YLLK+PV+ I+LK I+VS TGWA +AT+DVVYDLLHMMG
Sbjct:   506 RPGKPVVFDMDMSAGDFLSLFYLLKVPVDKIDLKAIIVSPTGWANAATIDVVYDLLHMMG 565

Query:   464 RDDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRY 523
             RDDIPVGLGD+ A+ + +P FPP+GGCKY KAIP G GGFLDSDTLYGLARDLPRSPRRY
Sbjct:   566 RDDIPVGLGDMLALNQSDPIFPPVGGCKYVKAIPRGCGGFLDSDTLYGLARDLPRSPRRY 625

Query:   524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGL-Q 582
             TAENSV  GA +D D PELRQPLA++VW+++ +S    SKIT+LTNGPLTNLA+II   +
Sbjct:   626 TAENSVTHGAPRDTDRPELRQPLAIEVWQNLTKSGNGVSKITVLTNGPLTNLAKIISSDK 685

Query:   583 NSSSVIQDVYIVGGNKGQD-NEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIP 641
              SSS+I++VYIVGG+  ++ ++KGN+FT+PS+ YAEFNMFLDPLAAK V ES L I L+P
Sbjct:   686 KSSSLIKEVYIVGGHINREKSDKGNIFTIPSNAYAEFNMFLDPLAAKTVLESALNITLVP 745

Query:   642 LHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAV 701
             L  Q +++SF  +L +L    KTPE+ F +RLL  L  L Q H  Y H+D FLGEVLGAV
Sbjct:   746 LATQHKLSSFQTMLDRLYSSTKTPEARFVKRLLVRLQALHQKHRRYTHIDMFLGEVLGAV 805

Query:   702 ILGGNP-HLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEV 760
             +LGG+   L    + + +++I++GD S+ G+I++++ +GK +K+LE +++    + FA  
Sbjct:   806 LLGGDDASLKPKMRAEHIKVIAEGDESRDGKILIDKLRGKQIKILERVDLISISESFASR 865

Query:   761 LGDHKQSAVIGSFYDQEKTWNTPPN 785
             L D KQSAVIGSF +Q+K W+TPP+
Sbjct:   866 LDDKKQSAVIGSFEEQKKIWSTPPS 890
GO:0016787 "hydrolase activity" evidence=ISS
GO:0005618 "cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0006148 "inosine catabolic process" evidence=IMP
GO:0006154 "adenosine catabolic process" evidence=IMP
GO:0009611 "response to wounding" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0047622 "adenosine nucleosidase activity" evidence=IMP
GO:0047724 "inosine nucleosidase activity" evidence=IMP
TAIR|locus:2144950 NSH4 "nucleoside hydrolase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144925 NSH5 "AT5G18870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC1683.06c SPBC1683.06c "uridine ribohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|P41409 rihA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0811 SO_0811 "inosine-uridine preferring nucleoside hydrolase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|G4MNZ6 MGG_05660 "Uridine nucleosidase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2032008 URH2 "uridine-ribohydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC17G8.02 SPAC17G8.02 "uridine ribohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPBC800.11 SPBC800.11 "inosine-uridine preferring nucleoside hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006105001
SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (878 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query795
cd02647312 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleo 1e-60
cd02647312 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleo 5e-54
pfam01156304 pfam01156, IU_nuc_hydro, Inosine-uridine preferrin 2e-30
pfam01156304 pfam01156, IU_nuc_hydro, Inosine-uridine preferrin 2e-26
cd02651302 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIU 7e-21
COG1957311 COG1957, URH1, Inosine-uridine nucleoside N-ribohy 2e-20
COG1957311 COG1957, URH1, Inosine-uridine nucleoside N-ribohy 1e-19
PRK10768304 PRK10768, PRK10768, ribonucleoside hydrolase RihC; 4e-17
PRK10443311 PRK10443, rihA, ribonucleoside hydrolase 1; Provis 2e-15
cd00455295 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolas 1e-14
cd00455295 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolas 8e-14
cd02650304 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subg 1e-13
cd02649306 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleos 9e-13
cd02651302 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIU 7e-12
cd02650304 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subg 1e-11
cd02649306 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleos 1e-11
PRK10443311 PRK10443, rihA, ribonucleoside hydrolase 1; Provis 2e-10
PRK10768304 PRK10768, PRK10768, ribonucleoside hydrolase RihC; 3e-10
cd02653320 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleosi 3e-10
PTZ00313326 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nu 5e-10
PLN02717316 PLN02717, PLN02717, uridine nucleosidase 7e-10
cd02653320 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleosi 3e-09
PTZ00313326 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nu 9e-09
PRK09955313 PRK09955, rihB, ribonucleoside hydrolase 2; Provis 7e-08
cd02654318 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH 1e-07
cd02648367 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleosi 3e-07
PLN02717316 PLN02717, PLN02717, uridine nucleosidase 4e-06
PRK09955313 PRK09955, rihB, ribonucleoside hydrolase 2; Provis 2e-05
cd02654318 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH 0.002
cd02648367 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleosi 0.002
>gnl|CDD|239113 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information 
 Score =  207 bits (528), Expect = 1e-60
 Identities = 107/358 (29%), Positives = 155/358 (43%), Gaps = 56/358 (15%)

Query: 407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDD 466
           K V+FD D +  D +AL+ LLK     ++LKGI VS           +  D         
Sbjct: 1   KNVIFDHDGNVDDLVALLLLLKNEK--VDLKGIGVSG----------IDADCYV---EPA 45

Query: 467 IPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAE 526
           + V    +  +G+               AIP+G GG              PRS RR  A 
Sbjct: 46  VSVTRKLIDRLGQ-------------RDAIPVGKGGSRAV-------NPFPRSWRRDAA- 84

Query: 527 NSVRFGASQDNDDPELRQPLAVDVW-KSIVESI-EPGSKITILTNGPLTNLAQIIGLQ-N 583
            SV       N+   +  PLA +     ++E I      +T+L  GPLTNLA+ +    +
Sbjct: 85  FSVDHL-PILNERYTVETPLAEETAQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPD 143

Query: 584 SSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLH 643
            SS I++VYI+GG     +  GNVFT PS+  AEFN+F DPLAAK VF+S L+I L+PL 
Sbjct: 144 ISSNIEEVYIMGGGV---DAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVPLD 200

Query: 644 MQRRVASFFKILHKLRDR---KKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGA 700
               V    + L   R R   ++ P S  + +    +  L+ +  +Y+  D     VLGA
Sbjct: 201 ATNTVPLTREFLETDRQRFAAQRLPASDLAGQGYALVKPLEFN-STYYMWDVLTTLVLGA 259

Query: 701 VILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFA 758
             +          +   LE+ +DG  +  GQ + +     L  V  S N       F 
Sbjct: 260 KEVDNTK------ESLILEVDTDGLSA--GQTVTSPNGRPLTLVT-SNNSYGSNRFFD 308

Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides. . Length = 312
>gnl|CDD|239113 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information
>gnl|CDD|216336 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase Back     alignment and domain information
>gnl|CDD|216336 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase Back     alignment and domain information
>gnl|CDD|239117 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|224868 COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|224868 COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>gnl|CDD|182465 PRK10443, rihA, ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>gnl|CDD|238257 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|238257 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|239116 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>gnl|CDD|239115 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>gnl|CDD|239117 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|239116 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>gnl|CDD|239115 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>gnl|CDD|182465 PRK10443, rihA, ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>gnl|CDD|239119 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|140334 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|178319 PLN02717, PLN02717, uridine nucleosidase Back     alignment and domain information
>gnl|CDD|239119 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|140334 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|182166 PRK09955, rihB, ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>gnl|CDD|239120 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH Back     alignment and domain information
>gnl|CDD|239114 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|178319 PLN02717, PLN02717, uridine nucleosidase Back     alignment and domain information
>gnl|CDD|182166 PRK09955, rihB, ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>gnl|CDD|239120 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH Back     alignment and domain information
>gnl|CDD|239114 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 795
COG1957311 URH1 Inosine-uridine nucleoside N-ribohydrolase [N 100.0
PRK09955313 rihB ribonucleoside hydrolase 2; Provisional 100.0
PLN02717316 uridine nucleosidase 100.0
PRK10443311 rihA ribonucleoside hydrolase 1; Provisional 100.0
PRK10768304 ribonucleoside hydrolase RihC; Provisional 100.0
cd02651302 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine 100.0
cd02653320 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrola 100.0
cd02649306 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrol 100.0
cd02650304 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nu 100.0
PTZ00313326 inosine-adenosine-guanosine-nucleoside hydrolase; 100.0
PF01156312 IU_nuc_hydro: Inosine-uridine preferring nucleosid 100.0
cd02654318 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolas 100.0
cd02647312 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydro 100.0
cd00455295 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleo 100.0
cd02648367 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrola 100.0
COG1957311 URH1 Inosine-uridine nucleoside N-ribohydrolase [N 100.0
PRK09955313 rihB ribonucleoside hydrolase 2; Provisional 100.0
PLN02717316 uridine nucleosidase 100.0
PRK10443311 rihA ribonucleoside hydrolase 1; Provisional 100.0
PRK10768304 ribonucleoside hydrolase RihC; Provisional 100.0
cd02651302 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine 100.0
cd02650304 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nu 100.0
cd02653320 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrola 100.0
cd02649306 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrol 100.0
PTZ00313326 inosine-adenosine-guanosine-nucleoside hydrolase; 100.0
cd02654318 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolas 100.0
cd02647312 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydro 100.0
KOG2938350 consensus Predicted inosine-uridine preferring nuc 100.0
cd00455295 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleo 100.0
PF01156312 IU_nuc_hydro: Inosine-uridine preferring nucleosid 100.0
cd02648367 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrola 100.0
cd02652293 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrola 100.0
KOG2938350 consensus Predicted inosine-uridine preferring nuc 99.96
cd02652293 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrola 99.94
PF07632260 DUF1593: Protein of unknown function (DUF1593); In 95.63
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-61  Score=516.79  Aligned_cols=304  Identities=27%  Similarity=0.366  Sum_probs=269.3

Q ss_pred             CCCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCC
Q 003794          405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPK  483 (795)
Q Consensus       405 ~~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~  483 (795)
                      +++|||||||+|.||++||+|||.+|  +++|+||| |.||...++. .+|++.+|+.+||.+||||+|+.+||.++.  
T Consensus         1 ~~~kiiiD~DpG~DDaiAlllal~~p--~i~l~giTtv~GNv~le~t-~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~--   75 (311)
T COG1957           1 MMRKIIIDCDPGHDDAIALLLALASP--EIDLLGITTVAGNVPLEQT-TRNALSVLELLGRADIPVYAGAARPLLREP--   75 (311)
T ss_pred             CCceEEEeCCCChhHHHHHHHHhcCC--CceEEEEEEecCcccHhHH-HHHHHHHHHHcCCCCCCeecCCCCCcCCCC--
Confidence            35799999999999999999999999  89999999 8999998874 579999999999999999999999997753  


Q ss_pred             CCCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCc
Q 003794          484 FPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSK  563 (795)
Q Consensus       484 ~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~  563 (795)
                             .++ +..||.+|+++.        .+|++...                   +...+|+++|++.+++ ++ ++
T Consensus        76 -------~~a-~~iHG~~Gl~~~--------~lp~~~~~-------------------~~~~~A~~~ii~~l~~-~~-g~  118 (311)
T COG1957          76 -------ITA-PEIHGESGLGGP--------ELPEPTRK-------------------LESKHAVDAIIDTLMA-NP-GE  118 (311)
T ss_pred             -------cch-hhhcCCcCCCCC--------CCCccccc-------------------ccCCcHHHHHHHHHHh-CC-Cc
Confidence                   233 457999999875        46664222                   2237899999999986 45 79


Q ss_pred             EEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEecc
Q 003794          564 ITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL  642 (795)
Q Consensus       564 VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipl  642 (795)
                      |||+++|||||||.|+ ++|++.++||+|+||||++   ..+||++     +.||||+|.|||||++||+|+++++|+||
T Consensus       119 vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~---~~~GNvt-----p~AEfNi~~DPeAA~iVf~sg~~i~mv~L  190 (311)
T COG1957         119 VTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAF---FVPGNVT-----PAAEFNIWVDPEAAKIVFTSGWPITMVPL  190 (311)
T ss_pred             EEEEecCChHHHHHHHHhCcchhhhhcEEEEecCcc---CCCCCcC-----cchhhhhccCHHHHHHHHhCCCceEEech
Confidence            9999999999999999 9999999999999999999   5789998     58999999999999999999999999999


Q ss_pred             ccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEee
Q 003794          643 HMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIIS  722 (795)
Q Consensus       643 dvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~  722 (795)
                      |+|+|+..+++.++++++.+ ++.++|+.+++++|.++.++..  .-.+.++||++|++|+++| +++ +.+..+|+|++
T Consensus       191 dvT~q~~~t~~~~~~~~~~~-~~~~~~~~d~l~~~~~~~~~~~--g~~g~~~hD~~a~a~l~~p-~l~-~~~~~~V~Ve~  265 (311)
T COG1957         191 DVTHQVLLTPDVLARLRAAG-GPAAELVADLLDFYLAYYKSRQ--GLDGAPLHDPLAVAYLLDP-ELF-TTREANVDVET  265 (311)
T ss_pred             hhhhhhcCCHHHHHHHHHhC-CccHHHHHHHHHHHHHHHhhcc--CCCCCCcccHHHHHHHhCh-hhh-cceEEEEEEEe
Confidence            99999999999999999877 6888999999999998887543  2346799999999999999 576 67889999999


Q ss_pred             cCCcccceeEEEecC----CCcceEEEeecCHHHHHHHHHHHHhcc
Q 003794          723 DGDISKVGQIIVNQE----QGKLVKVLESLNVAVYYDHFAEVLGDH  764 (795)
Q Consensus       723 ~g~~~t~G~tv~d~~----~~~~v~v~~~vD~~~f~~~l~~~L~~~  764 (795)
                      ++. +++|+|++|+.    ..+|++|+.++|.++|++++.++|.+.
T Consensus       266 ~~~-lt~G~Tv~d~~~~~~~~~n~~v~~~vD~~~f~~~i~~~l~~~  310 (311)
T COG1957         266 AGG-LTRGMTVVDWRGVLGKPPNAQVAVDVDVEGFLDLILEALARL  310 (311)
T ss_pred             CCC-CcCcceEEEecccCCCCCCeEEeeccCHHHHHHHHHHHHhcc
Confidence            986 89999999986    357999999999999999999999764

>PRK09955 rihB ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>PLN02717 uridine nucleosidase Back     alignment and domain information
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>PRK10768 ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3 Back     alignment and domain information
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH Back     alignment and domain information
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>PLN02717 uridine nucleosidase Back     alignment and domain information
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>PRK10768 ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH Back     alignment and domain information
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3 Back     alignment and domain information
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases Back     alignment and domain information
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases Back     alignment and domain information
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query795
1yoe_A322 Crystal Structure Of A The E. Coli Pyrimidine Nucle 1e-09
1yoe_A322 Crystal Structure Of A The E. Coli Pyrimidine Nucle 9e-06
3g5i_A312 Crystal Structure Of The E.Coli Riha Pyrimidine Nuc 1e-09
3g5i_A312 Crystal Structure Of The E.Coli Riha Pyrimidine Nuc 9e-06
3b9x_A333 Crystal Structure Of The E. Coli Pyrimidine Nucleos 2e-07
3b9x_A333 Crystal Structure Of The E. Coli Pyrimidine Nucleos 3e-05
1q8f_A313 Crystal Structure Of The E.Coli Pyrimidine Nucleosi 3e-07
1q8f_A313 Crystal Structure Of The E.Coli Pyrimidine Nucleosi 4e-05
3mkm_A316 Crystal Structure Of The E. Coli Pyrimidine Nucleos 3e-07
3mkm_A316 Crystal Structure Of The E. Coli Pyrimidine Nucleos 4e-05
3t8j_A311 Structural Analysis Of Thermostable S. Solfataricus 5e-07
3t8j_A311 Structural Analysis Of Thermostable S. Solfataricus 5e-04
3epw_A338 Crystal Structure Of Trypanosoma Vivax Nucleoside H 1e-06
1hp0_A339 Crystal Structure Of An Inosine-Adenosine-Guanosine 1e-06
1r4f_A339 Inosine-Adenosine-Guanosine Preferring Nucleoside H 2e-06
3t8i_A306 Structural Analysis Of Thermostable S. Solfataricus 2e-06
3t8i_A306 Structural Analysis Of Thermostable S. Solfataricus 2e-04
3b9g_A328 Crystal Structure Of Loop Deletion Mutant Of Trypan 2e-06
1ezr_A314 Crystal Structure Of Nucleoside Hydrolase From Leis 1e-05
1kic_A339 Inosine-adenosine-guanosine Preferring Nucleoside H 1e-05
2c40_A312 Crystal Structure Of Inosine-Uridine Preferring Nuc 7e-05
2c40_A312 Crystal Structure Of Inosine-Uridine Preferring Nuc 5e-04
1mas_A314 Purine Nucleoside Hydrolase Length = 314 9e-05
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside Hydrolase Ybek With Bound Ribose Length = 322 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58  VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
           V+   GL    LP+    +AP +  TA +++   +  SA P+T+   G  TN A+ L ++
Sbjct: 92  VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 148
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
           P L   I  I +MGGA+                  +GN       P AEFNI+ DP AA 
Sbjct: 149 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 186
Query: 176 TVLHSGIPVTIIPLDAT 192
            V  SGIPV +  LD T
Sbjct: 187 IVFQSGIPVVMAGLDVT 203
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside Hydrolase Ybek With Bound Ribose Length = 322 Back     alignment and structure
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine Nucleosidase Bound To A Iminoribitol-Based Inhibitor Length = 312 Back     alignment and structure
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine Nucleosidase Bound To A Iminoribitol-Based Inhibitor Length = 312 Back     alignment and structure
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik In Complex With Inosine Length = 333 Back     alignment and structure
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik In Complex With Inosine Length = 333 Back     alignment and structure
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside Hydrolase Yeik Length = 313 Back     alignment and structure
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside Hydrolase Yeik Length = 313 Back     alignment and structure
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik (Apo-Form) Length = 316 Back     alignment and structure
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik (Apo-Form) Length = 316 Back     alignment and structure
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Pyrimidine- Specific Nucleoside Hydrolase Length = 311 Back     alignment and structure
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Pyrimidine- Specific Nucleoside Hydrolase Length = 311 Back     alignment and structure
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside Hydrolase In Complex With The Inhibitor (2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2- D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3, 4-Diol Length = 338 Back     alignment and structure
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine- Preferring Nucleoside Hydrolase From Trypanosoma Vivax In Complex With The Substrate Analogue 3-Deaza-Adenosine Length = 339 Back     alignment and structure
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In Complex With 3- Deaza-Adenosine Length = 339 Back     alignment and structure
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Purine-Specific Nucleoside Hydrolase Length = 306 Back     alignment and structure
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Purine-Specific Nucleoside Hydrolase Length = 306 Back     alignment and structure
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh Length = 328 Back     alignment and structure
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania Major Length = 314 Back     alignment and structure
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In Complex With Inosine Length = 339 Back     alignment and structure
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside Hydrolase From Bacillus Anthracis At 2.2a Resolution Length = 312 Back     alignment and structure
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside Hydrolase From Bacillus Anthracis At 2.2a Resolution Length = 312 Back     alignment and structure
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase Length = 314 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query795
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 5e-29
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 2e-26
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 1e-25
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 1e-23
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 7e-25
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 2e-20
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 2e-24
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 5e-17
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 3e-24
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 2e-17
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 3e-23
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 1e-20
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 3e-23
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 2e-16
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 1e-19
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Length = 312 Back     alignment and structure
 Score =  116 bits (294), Expect = 5e-29
 Identities = 47/291 (16%), Positives = 85/291 (29%), Gaps = 71/291 (24%)

Query: 1   MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNT 60
              ++ I V      G  P                                         
Sbjct: 54  RFGKNTIEVAASNSRGKNPFPKDWRMHA-------------------------------- 81

Query: 61  NYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHL 118
            Y      L + G+    +    A   LI  +  +    T+   G  T+ A  L   P +
Sbjct: 82  FYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPII 141

Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
           +  I+ +  MGG                   + GN++  + +  AE+N F DP A   V 
Sbjct: 142 ENKIKRLVWMGGTF----------------RTAGNVHEPEHDGTAEWNSFWDPEAVARVW 185

Query: 179 HSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238
            + I + +I L++T  +P++ +   ++  ++  Y           I             Y
Sbjct: 186 EANIEIDLITLESTNQVPLTIDIREQW-AKERKYIGIDFLGQCYAIVPPLVHFAKN-STY 243

Query: 239 CMWDSFMAGVAL--SIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISDG 287
            +WD   A       +              +++ +N  V T     G S G
Sbjct: 244 YLWDVLTAAFVGKADLA-------------KVQTINSIVHTY----GPSQG 277
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Length = 312 Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Length = 338 Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Length = 338 Back     alignment and structure
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Length = 322 Back     alignment and structure
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Length = 322 Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Length = 306 Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Length = 306 Back     alignment and structure
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Length = 311 Back     alignment and structure
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Length = 311 Back     alignment and structure
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Length = 314 Back     alignment and structure
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Length = 314 Back     alignment and structure
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Length = 313 Back     alignment and structure
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Length = 313 Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Length = 360 Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query795
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 100.0
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 100.0
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 100.0
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 100.0
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 100.0
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 100.0
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 100.0
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 100.0
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 100.0
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 100.0
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 100.0
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 100.0
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 100.0
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 100.0
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 100.0
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 100.0
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 98.37
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 93.42
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-60  Score=519.20  Aligned_cols=307  Identities=22%  Similarity=0.297  Sum_probs=257.8

Q ss_pred             CCCCCCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCC
Q 003794          402 KKLMGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEV  480 (795)
Q Consensus       402 ~~~~~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~  480 (795)
                      +....+|||||||+|+||++||+|||.+|  ++||+||| |+||++.++ +.+|++++|+++||.||||+.|+..||..+
T Consensus         9 ~~~~~~~viiD~D~GiDDa~AL~~al~~p--~i~l~gIttv~GN~~~~~-~~~Na~~ll~~~g~~dIPV~~Ga~~Pl~~~   85 (322)
T 1yoe_A            9 HHGSALPILLDCDPGHDDAIAIVLALASP--ELDVKAITSSAGNQTPEK-TLRNVLRMLTLLNRTDIPVAGGAVKPLMRE   85 (322)
T ss_dssp             --CCCEEEEEEECCSHHHHHHHHHHHTCT--TEEEEEEEECSSSSCHHH-HHHHHHHHHHHTTCTTSCEEECCSSCSSSC
T ss_pred             ccCCCceEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEEcCCCCCHHH-HHHHHHHHHHHcCCCCCCEEeCCCccccCC
Confidence            34567899999999999999999999999  89999999 679998876 467999999999999999999999999764


Q ss_pred             CCCCCCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCC
Q 003794          481 NPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEP  560 (795)
Q Consensus       481 ~~~~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~  560 (795)
                      .         .. ...+||.+||++.        .+|++...                   +...+|+++|.+++++ + 
T Consensus        86 ~---------~~-a~~~HG~~Glg~~--------~~p~~~~~-------------------~~~~~Av~~i~~~l~~-~-  126 (322)
T 1yoe_A           86 L---------II-ADNVHGESGLDGP--------ALPEPTFA-------------------PQNCTAVELMAKTLRE-S-  126 (322)
T ss_dssp             C---------CC-C-----CCSSCSS--------CCCCCSSC-------------------CCSSCHHHHHHHHHHH-C-
T ss_pred             C---------cc-ccccCCCCCCCCc--------CCCCCcCC-------------------CCcchHHHHHHHHHHh-C-
Confidence            2         12 2457999999886        46654221                   2346899999998886 3 


Q ss_pred             CCcEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEE
Q 003794          561 GSKITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKL  639 (795)
Q Consensus       561 ~~~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itl  639 (795)
                      +++||||++|||||||.|+ ++|++.++|++||||||++.    .||++     +.||||+|+||+||++||+|++|++|
T Consensus       127 p~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~----~GN~t-----p~AEfN~~~DPeAA~~V~~s~~~i~~  197 (322)
T 1yoe_A          127 AEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMG----LGNWT-----PAAEFNIYVDPEAAEIVFQSGIPVVM  197 (322)
T ss_dssp             SSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSS----CCSSS-----SSCCHHHHHCHHHHHHHHTSSSCEEE
T ss_pred             CCCEEEEEeccHHHHHHHHHHChHHHhhCCEEEEeCCCCC----CCCCC-----cccHhhcccCHHHHHHHHhCCCCEEE
Confidence            4799999999999999999 99999999999999999993    59987     58999999999999999999999999


Q ss_pred             eccccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEE
Q 003794          640 IPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLE  719 (795)
Q Consensus       640 ipldvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~  719 (795)
                      +|||+|+++.++++++++|+..+ ++.++|+.+++++|.++.... .+...++++||++|++|+++| +++ +++..+++
T Consensus       198 v~ldvt~~~~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lhD~lava~~~~P-~~~-~~~~~~v~  273 (322)
T 1yoe_A          198 AGLDVTHKAQIHVEDTERFRAIG-NPVSTIVAELLDFFLEYHKDE-KWGFVGAPLHDPCTIAWLLKP-ELF-TSVERWVG  273 (322)
T ss_dssp             ECHHHHTTSEECHHHHHHHHHHC-SHHHHHHHHHHHHHHC------CCCCSSEECCTHHHHHHHHCG-GGE-EEEEECEE
T ss_pred             ECccccccccCCHHHHHHHHhhC-CcHHHHHHHHHHHHHHHHhhc-ccCCCCCccccHHHhhheecc-cce-EEEEEEEE
Confidence            99999999999999999998766 799999999999887643221 233346889999999999999 576 57888999


Q ss_pred             EeecCCcccceeEEEecCC----CcceEEEeecCHHHHHHHHHHHHhcc
Q 003794          720 IISDGDISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHFAEVLGDH  764 (795)
Q Consensus       720 Ve~~g~~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l~~~L~~~  764 (795)
                      |+++|. +++|+|++|+..    .+|++|++++|.++|+++|.++|...
T Consensus       274 Ve~~g~-~t~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~~  321 (322)
T 1yoe_A          274 VETQGK-YTQGMTVVDYYYLTGNKPNATVMVDVDRQGFVDLLADRLKFY  321 (322)
T ss_dssp             ECCSCS-SCTTCEEECTTCCSSCCCCEEEEEEECHHHHHHHHHHHHGGG
T ss_pred             EEeCCC-CCCceEEEeccccCCCCCCeEEEeecCHHHHHHHHHHHHHhh
Confidence            999875 799999999642    46899999999999999999998753
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Back     alignment and structure
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Back     alignment and structure
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Back     alignment and structure
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Back     alignment and structure
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Back     alignment and structure
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Back     alignment and structure
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Back     alignment and structure
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Back     alignment and structure
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 795
d1kica_327 c.70.1.1 (A:) Inosine-adenosine-guanosine preferri 7e-28
d1kica_327 c.70.1.1 (A:) Inosine-adenosine-guanosine preferri 2e-18
d2masa_313 c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohyd 1e-20
d2masa_313 c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohyd 4e-12
d1q8fa_308 c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK 2e-13
d1q8fa_308 c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK 6e-12
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Length = 327 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleoside hydrolase
superfamily: Nucleoside hydrolase
family: Nucleoside hydrolase
domain: Inosine-adenosine-guanosine preferring nucleoside hydrolase
species: Trypanosoma vivax [TaxId: 5699]

 Score =  112 bits (282), Expect = 7e-28
 Identities = 57/361 (15%), Positives = 114/361 (31%), Gaps = 45/361 (12%)

Query: 407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGI-LVSSTGWATSATVDVVYDLLHMMGRD 465
           K VV D   +  DF+A++ L     E + L G     +  +  +        +  M    
Sbjct: 3   KNVVLDHAGNLDDFVAMVLLASNT-EKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNM 61

Query: 466 DIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRYT 524
           ++P+      A   VNP                       +  +  +   ++P +   + 
Sbjct: 62  NLPLFPIGKSAATAVNP---------------FPKEWRCLAKNMDDMPILNIPENVELW- 105

Query: 525 AENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNS 584
                      D    E  +     +   +V       K+TI   GPL+N+A  I     
Sbjct: 106 -----------DKIKAENEKYEGQQLLADLVM--NSEEKVTICVTGPLSNVAWCIDKYGE 152

Query: 585 SSV--IQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESK-LEIKLIP 641
                +++  I+GG     + +GNVF   +   AE+N++ DP +AK VF    L   +  
Sbjct: 153 KFTSKVEECVIMGGAV---DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFS 209

Query: 642 LHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAV 701
           L     V      + +  ++     S+                        +  + L A 
Sbjct: 210 LDSTNTVPVRSPYVQRFGEQTNFLLSILVG---TMWAMCTHCELLRDGDGYYAWDALTAA 266

Query: 702 ILGGNPHLNQTYKIKSLEIISDGDISKVGQIIVNQEQG-KLVKVLESLNVAVYYDHFAEV 760
            +  +  +        ++++ D   ++ G  +    +   L  V  +     + D     
Sbjct: 267 YV-VDQKVA-NVDPVPIDVVVDKQPNE-GATVRTDAENYPLTFVARNPEAEFFLDMLLRS 323

Query: 761 L 761
            
Sbjct: 324 A 324
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Length = 327 Back     information, alignment and structure
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Length = 313 Back     information, alignment and structure
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Length = 313 Back     information, alignment and structure
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Length = 308 Back     information, alignment and structure
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Length = 308 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query795
d2masa_313 Inosine-uridine nucleoside N-ribohydrolase, IU-NH 100.0
d1q8fa_308 Pyrimidine nucleoside hydrolase YeiK {Escherichia 100.0
d1kica_327 Inosine-adenosine-guanosine preferring nucleoside 100.0
d2masa_313 Inosine-uridine nucleoside N-ribohydrolase, IU-NH 100.0
d1q8fa_308 Pyrimidine nucleoside hydrolase YeiK {Escherichia 100.0
d1kica_327 Inosine-adenosine-guanosine preferring nucleoside 100.0
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleoside hydrolase
superfamily: Nucleoside hydrolase
family: Nucleoside hydrolase
domain: Inosine-uridine nucleoside N-ribohydrolase, IU-NH
species: Crithidia fasciculata [TaxId: 5656]

Probab=100.00  E-value=2.4e-59  Score=505.60  Aligned_cols=303  Identities=18%  Similarity=0.243  Sum_probs=261.0

Q ss_pred             CcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCC
Q 003794          407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFP  485 (795)
Q Consensus       407 kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p  485 (795)
                      ||||||||+|+||++||+|||++|  ++||+||| |+||++.+++ .+|++++|+++||.+|||+.|+..|+..+..   
T Consensus         2 kkvIiDtD~G~DDa~Al~~al~~p--~vel~gIt~v~GN~~~~~~-~~n~~~ll~~~g~~~iPV~~G~~~~~~~~~~---   75 (313)
T d2masa_           2 KKIILDCDPGLDDAVAILLAHGNP--EIELLAITTVVGNQTLAKV-TRNAQLVADIAGITGVPIAAGCDKPLVRKIM---   75 (313)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCT--TEEEEEEEECSSSSCHHHH-HHHHHHHHHHTTCCSCCEEECCSSCSSSCCC---
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCC--CcEEEEEEEccCCcCHHHH-HHHHHHHHHHhCCCCCcEEecCCCccccccc---
Confidence            689999999999999999999999  89999999 6899988764 6799999999999999999999999976421   


Q ss_pred             CCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEE
Q 003794          486 PIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKIT  565 (795)
Q Consensus       486 ~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~Vt  565 (795)
                             ....+||.+|+++.        .+|.....                  ...+..|..++++.+++ +++++||
T Consensus        76 -------~~~~~~g~~g~g~~--------~~p~~~~~------------------~~~~~~a~~~~i~~~~~-~~p~~it  121 (313)
T d2masa_          76 -------TAGHIHGESGMGTV--------AYPAEFKN------------------KVDERHAVNLIIDLVMS-HEPKTIT  121 (313)
T ss_dssp             -------CCHHHHCSSSSTTC--------CCCSSCSS------------------CBCSSCHHHHHHHHHHH-SCTTCEE
T ss_pred             -------chhhccccCCCCCc--------cCCccccc------------------cccchhhhHHHHHHHhh-cCCCcEE
Confidence                   22357999999876        35543221                  12346677777666665 5568999


Q ss_pred             EEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEecccc
Q 003794          566 ILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHM  644 (795)
Q Consensus       566 Ila~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipldv  644 (795)
                      ||++|||||||+|+ ++|++.++|++||||||++.    +||++     +.||||||+|||||++||+|++|++++|||+
T Consensus       122 iva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~----~GN~~-----~~aEfN~~~DPeAA~iVl~s~~~i~~v~ldv  192 (313)
T d2masa_         122 LVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYH----EGNAT-----SVAEFNIIIDPEAAHIVFNESWQVTMVGLDL  192 (313)
T ss_dssp             EEECSCSHHHHHHHHHCTHHHHHSCEEEEECCCSS----CCSSS-----SSCCHHHHTCHHHHHHHHHSSSCEEEECHHH
T ss_pred             EEEcCCchHHHHHHHhhhhhhhhcCeEEEeccCCC----CCCCc-----cccccceeeChHHHHHHhccCCCeEEecchh
Confidence            99999999999999 99999999999999999993    69986     5899999999999999999999999999999


Q ss_pred             chhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeecC
Q 003794          645 QRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDG  724 (795)
Q Consensus       645 t~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~g  724 (795)
                      |+++.++.++++++...+ ++.++|+.+++..|.++.+.+.  ...++.+||++|++++++| +++ +++..+|+|+++|
T Consensus       193 t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~lA~a~~idP-~l~-~~~~~~v~Vet~g  267 (313)
T d2masa_         193 THQALATPPILQRVKEVD-TNPARFMLEIMDYYTKIYQSNR--YMAAAAVHDPCAVAYVIDP-SVM-TTERVPVDIELTG  267 (313)
T ss_dssp             HTTCEECHHHHHHHHTTC-SHHHHHHHHHHHHHHHHHHSTT--CCSSEECCHHHHHHHHHCG-GGE-EEEECCEEECSSC
T ss_pred             hhcccCCHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhcc--CcCCCccCcHHHhHHhcCc-cee-EEEEEeEEEEeCC
Confidence            999999999999998865 8999999999999988776432  3346889999999999999 576 5778899999988


Q ss_pred             CcccceeEEEecCC----CcceEEEeecCHHHHHHHHHHHHhcc
Q 003794          725 DISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHFAEVLGDH  764 (795)
Q Consensus       725 ~~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l~~~L~~~  764 (795)
                      . .+||+|++|+..    ++|++|+.++|.++|+++|.++|.+.
T Consensus       268 ~-~trG~tv~d~~~~~~~~~n~~V~~~vD~~~F~~~l~~~L~r~  310 (313)
T d2masa_         268 K-LTLGMTVADFRNPRPEHCHTQVAVKLDFEKFWGLVLDALERI  310 (313)
T ss_dssp             S-SCTTCEEECCCSSCCSSCSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             C-CCCCeEEEecccCCCCCCCeEEEeeCCHHHHHHHHHHHHHhh
Confidence            5 799999998643    46899999999999999999999865
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Back     information, alignment and structure
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Back     information, alignment and structure