Citrus Sinensis ID: 003873

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790
MPQDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLSS
cccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHccccccccccccEEEEEcccccccHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHcccccccccHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHccEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcc
ccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHccEEccccccccEEEEEcccccHHHHHHHHHccccEEcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHcccccccccccccccccccEEcccccccHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccHHHEccccccccccccccccEEEEEEEcccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccEEEccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHcccccccccEEEHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHEEccHHHHccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEcc
mpqdirkwflkphskdkdnatipantalsnlettnsepgcgghesmgrrktskyfatdkqkpedggekeelpakrkaekddgksvrssplkkfhkaddddddfvppsvkknsvgatpskklksgsgravaqksvdidddeeedvkktesplkssgrgrggrgasgapavgrgrgggrggfmnfgerkdpphkgekevpegapdclggltFVISGTLDSLEREEAEDLIKrhggrvtgsvskktnyllcdediagakstkakelgtpfltedglfDMIRASKPMKALAQAESKKSVEKVAAslpkkspqnieakstsapkapiermktvaspakrkgqniqqssltwtekyrpktpneivgNQQLVKQLHTWLAHWNEKFLdtgtkrngkkqndasAEKAAilsgspgmgktTAAKLVCQMLGFQAievnasdsrgkadakiskgiggsnaNSIKELVSNEalsanmdrskhpktvLIMDevdgmsagdrgGIADLIASIKiskipiicicndrYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLssakdedispftavdklfgfnggklrmderidlsmsdpdlvplliqenyinyrpssagrdeVKRLSLIARAAesisdgdifnVQIRRNqqwqlsqssslasciiPAALMHGQRETLEQGERNFnrfggwlgknstmgKNLRLLEDLHFHHLASrksklgrdtLRLDYFSLLLKQLTeplrvlpkDELLRKLLSS
mpqdirkwflkphskdkdnatipantalsnlettnsepgcgghesmgrrktskyfatdkqkpedggekeelpakrkaekddgksvrssplkkfhkaddddddfvppsvkknsvgatpskklksgsgravaqksvdidddeeedvkktesplkssgrgrggrgasgapavgrgrgggrggfmnfGERKDPPHKGEKEVpegapdclgGLTFVISGTLDSLEREEAEDlikrhggrvtgsvskktnylLCDEDIAgakstkakelgtpflTEDGLFDMIRASKPMKALAQAESKKSVEKVAaslpkkspqnieakstsapkapiermktvaspakrkgqniqqssltwtekyrpktpneIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAilsgspgmGKTTAAKLVCQMLGFQAIevnasdsrgkADAKiskgiggsnanSIKELVSNEALsanmdrskhpKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLssakdedispftavdklfgfngGKLRMDERIDLSMSDPDLVPLLIQENYInyrpssagrdeVKRLSLIARAaesisdgdifnVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLAsrksklgrdtLRLDYFSLLLkqlteplrvlpkdellrkllss
MPQDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKAddddddFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVdidddeeedVKKTESPLKssgrgrggrgasgapavgrgrgggrggFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLiasikiskipiicicNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNqqwqlsqssslASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLSS
**********************************************************************************************************************************************************************************************************DCLGGLTFVISGTLDSL********I****GRVTGSVSKKTNYLLCDEDIAGA*******LGTPFLTEDGLFDMI*******************************************************************************EIVGNQQLVKQLHTWLAHWNEKFLD******************************TAAKLVCQMLGFQAIEV**********************************************VLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRP*******VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLP***********
**QDIRK****************************************************************************************************************************************************************************************************CLGGLTFVISGTLDSLE*E***DL***HGGRV**SVSK*TN*******************GTPFLTEDGLFDMI********************************************************************WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFL***************AEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKE*****************KTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIK*********SSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRF************************************LRLDYFSLLLKQLTEPLRVLPKDELLRKLLSS
MPQDIRKWFLKPHSKDKDNATIPANTALSNLETT****************TSKY************************************KKFHKADDDDDDFVPPSVKK*********************************************************AVGRGRGGGRGGFMNFGERK**********PEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKP*************************************APIERM***************QSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGT*************KAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNAS*********ISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQ********SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLSS
*******WF*KP****************************************************************************************************************************************************************************ERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKP***********************************************************SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLD************ASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNE*********KHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDEL****L**
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MPQDIRKWFLKPHSKDKDNATIPANTALSNLETTNSEPGCGGHESMGRRKTSKYFATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query790 2.2.26 [Sep-21-2011]
P35251 1148 Replication factor C subu yes no 0.768 0.528 0.359 1e-107
P35601 1131 Replication factor C subu yes no 0.730 0.510 0.362 1e-107
P35600 986 Replication factor C subu yes no 0.715 0.573 0.350 4e-94
O60182 934 Replication factor C subu yes no 0.677 0.572 0.340 4e-80
Q54MH9 1401 Probable replication fact yes no 0.506 0.285 0.373 4e-78
P38630 861 Replication factor C subu yes no 0.692 0.635 0.339 3e-75
O26342479 Replication factor C larg yes no 0.375 0.620 0.320 5e-32
Q8TZC5510 Replication factor C larg yes no 0.392 0.607 0.294 4e-31
A5UMF4492 Replication factor C larg yes no 0.360 0.579 0.329 9e-31
Q58294 516 Replication factor C larg yes no 0.382 0.585 0.299 2e-30
>sp|P35251|RFC1_HUMAN Replication factor C subunit 1 OS=Homo sapiens GN=RFC1 PE=1 SV=4 Back     alignment and function desciption
 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 75/682 (10%)

Query: 147  TESPLKSSGRGRGGRGASGAPAVGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLG 206
            T++P K+  +    +  S +P     +      + ++  R+ P   G KE+P+GA +CL 
Sbjct: 351  TKTPKKT--KSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLE 408

Query: 207  GLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP 266
            GL FVI+G L+S+ER+EA+ LI+R+GG+VTG+VSKKTNYL+   D   +KS KA  LGT 
Sbjct: 409  GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTK 468

Query: 267  FLTEDGLFDMIRASKPMKALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKA------ 320
             + EDGL ++IR     K+  +   +  ++K  + L +   +N++ K   +P        
Sbjct: 469  IIDEDGLLNLIRTMPGKKSKYEIAVETEMKK-ESKLERTPQKNVQGKRKISPSKKESESK 527

Query: 321  ---PIERMKTVASPAKR-----------------------KGQNIQQSS-------LTWT 347
               P  +  ++A   K+                       K +N+   S       L W 
Sbjct: 528  KSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWV 587

Query: 348  EKYRPKTPNEIVG---NQQLVKQLHTWLAHW------NEKFLDTGTKRNGKKQNDASAEK 398
            +KY+P +   I+G   +Q    +L  WL +W      ++K      K +GK  +D S+ K
Sbjct: 588  DKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGK--DDGSSFK 645

Query: 399  AAILSGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAK--ISKGIGGSNANSIKEL 456
            AA+LSG PG+GKTT A LVCQ LG+  +E+NASD+R K+  K  +++ +   N  SIK  
Sbjct: 646  AALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESL---NNTSIKGF 702

Query: 457  VSNEALSANMDRSKHPKTVLIMDEVDGMSAG-DRGGIADLIASIKISKIPIICICNDRYS 515
             SN A S     S   K  LIMDEVDGM+   DRGGI +LI  IK +KIPIIC+CNDR  
Sbjct: 703  YSNGAAS-----SVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH 757

Query: 516  QKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQ 575
             K++SLV+YC DLRF++PR ++I   +M IA  EGL++   A+ E+    N DIR  ++ 
Sbjct: 758  PKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHN 817

Query: 576  LQYMSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF--GFNGGKLRMDERIDLSMSD 633
            L         + YD  +     + KD  + PF    K+F  G     + + ++ DL   D
Sbjct: 818  LSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHD 877

Query: 634  PDLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSS 693
              + PL +QENYI+ +P +AG D  K L L++RAA+SI DGD+ + QIR  Q W L  + 
Sbjct: 878  YSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQ 937

Query: 694  SLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
            ++ + ++P  LM G           F  F  WLGK+S+ GK+ R+++DL  H   S ++ 
Sbjct: 938  AIYASVLPGELMRGYM-------TQFPTFPSWLGKHSSTGKHDRIVQDLALH--MSLRTY 988

Query: 754  LGRDTLRLDYFSLLLKQLTEPL 775
              + T+ +DY SLL   L +PL
Sbjct: 989  SSKRTVNMDYLSLLRDALVQPL 1010
Interacts with C-terminus of PCNA. 5' phosphate residue is required for binding of the N-terminal DNA-binding domain to duplex DNA, suggesting a role in recognition of non-primer template DNA structures during replication and/or repair.
Homo sapiens (taxid: 9606)
>sp|P35601|RFC1_MOUSE Replication factor C subunit 1 OS=Mus musculus GN=Rfc1 PE=1 SV=2 Back     alignment and function description
>sp|P35600|RFC1_DROME Replication factor C subunit 1 OS=Drosophila melanogaster GN=Gnf1 PE=1 SV=2 Back     alignment and function description
>sp|O60182|RFC1_SCHPO Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc1 PE=1 SV=1 Back     alignment and function description
>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=Dictyostelium discoideum GN=rfc1 PE=3 SV=1 Back     alignment and function description
>sp|P38630|RFC1_YEAST Replication factor C subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC1 PE=1 SV=1 Back     alignment and function description
>sp|O26342|RFCL_METTH Replication factor C large subunit OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rfcL PE=1 SV=1 Back     alignment and function description
>sp|Q8TZC5|RFCL_METKA Replication factor C large subunit OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rfcL PE=3 SV=1 Back     alignment and function description
>sp|A5UMF4|RFCL_METS3 Replication factor C large subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcL PE=3 SV=1 Back     alignment and function description
>sp|Q58294|RFCL_METJA Replication factor C large subunit OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rfcL PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query790
449445013 981 PREDICTED: replication factor C subunit 0.983 0.792 0.700 0.0
449481177 942 PREDICTED: replication factor C subunit 0.967 0.811 0.705 0.0
296083902 941 unnamed protein product [Vitis vinifera] 0.951 0.799 0.709 0.0
359479291 933 PREDICTED: replication factor C subunit 0.941 0.797 0.709 0.0
356517673 947 PREDICTED: replication factor C subunit 0.967 0.806 0.678 0.0
356544778 1112 PREDICTED: replication factor C subunit 0.981 0.696 0.697 0.0
22326948 956 replication factor C1 [Arabidopsis thali 0.977 0.807 0.697 0.0
312282245 933 unnamed protein product [Thellungiella h 0.949 0.803 0.691 0.0
297812313 960 AAA-type ATPase family protein [Arabidop 0.981 0.807 0.693 0.0
115485959 1021 Os11g0572100 [Oryza sativa Japonica Grou 0.986 0.762 0.594 0.0
>gi|449445013|ref|XP_004140268.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1065 bits (2753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/802 (70%), Positives = 653/802 (81%), Gaps = 25/802 (3%)

Query: 4   DIRKWFLKPHSKDKDNATIPANTALSNLETTNS--EPGCGGHESMGRRKTSKYFATDKQK 61
           DIRKWF+K H KD  + +  A  A S+LE + S  + G  G ES GR+ TSKYFA++KQ+
Sbjct: 3   DIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAGKTGPSGGESAGRQITSKYFASEKQE 62

Query: 62  PEDGGEKEELP-------------AKRKAEKDDGKSVRSSPLKKFHKADDDDDDFVPPSV 108
            +D  E E LP             AKRK +K + +S ++SPLKK +K DD+DDD V  S 
Sbjct: 63  AKDAEETEVLPIIRKSPRDTKESPAKRKFQKYNEESPKASPLKKSNKVDDNDDDAVLSSS 122

Query: 109 KKNSVGATPSKKLKSGSGRAVAQKSVDIDDDEEEDVKKTESPLKSSGRGRGGRGASGAPA 168
           KKN    TP+KKLKSGSG+ + QK V+I+  ++E+ K T+S LK SGRGRGG+G+S A  
Sbjct: 123 KKNMSEVTPNKKLKSGSGKGITQKPVEIEASDDEETKGTDSSLKPSGRGRGGKGSSAATI 182

Query: 169 VGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLI 228
            GRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCL GLTFVISGTLDSLEREEAEDLI
Sbjct: 183 GGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLI 242

Query: 229 KRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQ 288
           KRHGGRVTGSVSKKTNYLLCDEDI G KS+KAKELGT FLTEDGLFDMIRAS   KA  +
Sbjct: 243 KRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGK-KAPPR 301

Query: 289 AESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTE 348
            + KKSV K   S  KK+ Q ++AKS        + +   ASPAK+K    + S+LTWTE
Sbjct: 302 QDPKKSVVKSEESPTKKNFQKVQAKSH-------KDLAAGASPAKQKSGTAEFSNLTWTE 354

Query: 349 KYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGM 408
           KYRPK PN+I+GNQ LVKQLH WLAHWNE FLD G+K+  KK +D+ A+KA +L G PG+
Sbjct: 355 KYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGI 414

Query: 409 GKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDR 468
           GKTT+AKLV QMLGF+AIEVNASD+RGK+DAKI KGIGGSNANSIKEL+SNE+L   M++
Sbjct: 415 GKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMNQ 474

Query: 469 SKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCSDL 528
            KH KTVLIMDEVDGMSAGDRGG+ADLIASIK+SKIPIICICNDRYSQKLKSLVNYC  L
Sbjct: 475 PKHHKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLIL 534

Query: 529 RFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKY 588
            FRKP KQ++AKRL+Q+ANAEGL+VNEIALEELA+RVNGD+RMA+NQLQY+SLS+SVIKY
Sbjct: 535 SFRKPTKQQMAKRLVQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKY 594

Query: 589 DDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINY 648
           DDIRQRLLSS KDEDISPFTAVDKLFGFN GKLRMDERIDLSMSD DLVPLLIQENYINY
Sbjct: 595 DDIRQRLLSSKKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINY 654

Query: 649 RPSSAGRDE--VKRLSLIARAAESISDGDIFNVQIRRNQQWQLSQSSSLASCIIPAALMH 706
           RPS+  +D+  +KR+ LIARAAESI+DGDI NVQIRR++QWQLSQSS +ASCIIPA+L+H
Sbjct: 655 RPSAVSKDDTGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCVASCIIPASLLH 714

Query: 707 GQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSL 766
           GQRETLEQ ERNFNRFG WLGKNST GKN+RLLEDLH H LASR+S  GR+ LR++  +L
Sbjct: 715 GQRETLEQYERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTL 774

Query: 767 LLKQLTEPLRVLPKDELLRKLL 788
            LK+LTEPL  LPKDE ++ ++
Sbjct: 775 FLKRLTEPLHTLPKDEAVKTVV 796

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449481177|ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296083902|emb|CBI24290.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479291|ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356517673|ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356544778|ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|22326948|ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana] gi|13374860|emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gi|332005585|gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282245|dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|297812313|ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319877|gb|EFH50299.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115485959|ref|NP_001068123.1| Os11g0572100 [Oryza sativa Japonica Group] gi|108864532|gb|ABA94349.2| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa Japonica Group] gi|113645345|dbj|BAF28486.1| Os11g0572100 [Oryza sativa Japonica Group] gi|215697840|dbj|BAG92033.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query790
TAIR|locus:504956441 956 RFC1 "replication factor C1" [ 0.977 0.807 0.633 4.7e-254
DICTYBASE|DDB_G0285961 1401 rfc1 "replication factor C sub 0.593 0.334 0.342 4.7e-87
FB|FBgn0004913 986 Gnf1 "Germ line transcription 0.579 0.464 0.323 2e-82
SGD|S000005743 861 RFC1 "Subunit of heteropentame 0.694 0.637 0.336 1.2e-73
UNIPROTKB|E1C339 1153 RFC1 "Uncharacterized protein" 0.645 0.442 0.341 1.9e-71
UNIPROTKB|F1NEP9 1147 RFC1 "Uncharacterized protein" 0.643 0.442 0.343 6.4e-71
MGI|MGI:97891 1131 Rfc1 "replication factor C (ac 0.634 0.442 0.329 9.9e-67
UNIPROTKB|F1S4I7 1146 RFC1 "Uncharacterized protein" 0.640 0.441 0.344 1.6e-66
ZFIN|ZDB-GENE-070410-99 1147 rfc1 "replication factor C (ac 0.663 0.456 0.336 2.2e-66
UNIPROTKB|P35251 1148 RFC1 "Replication factor C sub 0.605 0.416 0.346 1.5e-65
TAIR|locus:504956441 RFC1 "replication factor C1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2446 (866.1 bits), Expect = 4.7e-254, P = 4.7e-254
 Identities = 502/793 (63%), Positives = 580/793 (73%)

Query:     4 DIRKWFLKPHSKDKDNATIPANTA-----LSNLETT---NSEPGCGGHESMGRRKTSKYF 55
             DIRKWF+K H  +K N + P +T+     + N   T    SE      E+  RRKTSKYF
Sbjct:     3 DIRKWFMKAH--EKGNGSAPKSTSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYF 60

Query:    56 ATDKQKPEDGGEKEELPAKRKAEKDDGKSVRSSPLKKFHKAXXXXXXFVPPSVKKNSVGA 115
               DK K +D  E E +PAKRK + +    V+  P K           F  P + + +   
Sbjct:    61 GKDKTKVKDEKEVEAIPAKRKLKTESDDLVKPRPRKVTKVVDDDDDDFDVP-ISRKTRDT 119

Query:   116 TPSKKLKSGSGRAVAQKSVXXXXXXXXXVKKTESPLKXXXXXXXXXXXXXXXXXXXXXXX 175
             TPSKKLKSGSGR +A K+V          K+T  PLK                       
Sbjct:   120 TPSKKLKSGSGRGIASKTVDNDDDDDGEDKET--PLKSAGRGRGGRAAPGASTGGRGRGG 177

Query:   176 XXXXFMNFGERKDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRV 235
                 FMNFGERKDPPHKGEKEVPEG PDCL GLTFVISGTLDSLEREEAEDLIKRHGGR+
Sbjct:   178 GRGGFMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRI 237

Query:   236 TGSVSKKTNYLLCDEDIAGAKSTKAKELGTPFLTEDGLFDMIRASKPMKALAQAESKKSV 295
             TGSVSKKT YLLCDEDI G KS KAKELGT FLTEDGLFD+IR+SKP+K      S K  
Sbjct:   238 TGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIRSSKPVKKSLPERSNKGT 297

Query:   296 EKVAASLPKKSPQNIEAKSTSAPKAPIERMKTVASPAKRKGQNIQQSSLTWTEKYRPKTP 355
             EK+ A  PK SPQ  E +     K+  +++     PAK K + I+ +SL WTEKYRPK P
Sbjct:   298 EKICAP-PKTSPQKEETRGKPLAKSSPKKVP----PAKGKNKIIE-TSLPWTEKYRPKVP 351

Query:   356 NEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAK 415
             NEIVGNQ LV QLH WL+HW+++F  TG+K  GKK NDA ++KA +LSG+PG+GKTT+AK
Sbjct:   352 NEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAK 411

Query:   416 LVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSANMDRSKHPKTV 475
             LV QMLGFQA+EVNASDSRGKA++ I+KGIGGSNANS+KELV+NEA++AN DRSKHPKTV
Sbjct:   412 LVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTV 471

Query:   476 LIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKSLVNYCSDLRFRKPRK 535
             LIMDEVDGMSAGDRGG+ADL               NDRYSQKLKSLVNYC  L +RKP K
Sbjct:   472 LIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTK 531

Query:   536 QEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLSVIKYDDIRQRL 595
             Q++AKRLM IA AEGLE+NEIALEELA+RVNGDIR+A+NQLQYMSLS+SVIKYDDIRQRL
Sbjct:   532 QQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRL 591

Query:   596 LSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGR 655
             LSSAKDEDISPFTAVDKLFG+NGGKLRMDERIDLSMSDPDLVPLLIQENY+NYRPS  G+
Sbjct:   592 LSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPS--GK 649

Query:   656 DEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXXXASCIIPAALMHGQRETLEQG 715
             DE KR+ L+ARAAESI+DGDI NVQIRR            AS I+PA+L+HG RE LEQG
Sbjct:   650 DEAKRMDLLARAAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQG 709

Query:   716 ERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPL 775
             ERNFNRFGGWLGKNST GKN RL+EDLH H LASR+S  GR+TLR+DY  LLL +LT PL
Sbjct:   710 ERNFNRFGGWLGKNSTAGKNRRLMEDLHVHVLASRESSAGRETLRVDYLPLLLSRLTSPL 769

Query:   776 RVLPKDELLRKLL 788
             + LPKDE + +++
Sbjct:   770 QTLPKDEAVSEVV 782
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0003689 "DNA clamp loader activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005663 "DNA replication factor C complex" evidence=IEA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0006974 "response to DNA damage stimulus" evidence=IMP
GO:0031935 "regulation of chromatin silencing" evidence=IMP
GO:0051570 "regulation of histone H3-K9 methylation" evidence=IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0007126 "meiosis" evidence=IMP
GO:0000003 "reproduction" evidence=IMP
GO:0000712 "resolution of meiotic recombination intermediates" evidence=IMP
DICTYBASE|DDB_G0285961 rfc1 "replication factor C subunit 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0004913 Gnf1 "Germ line transcription factor 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000005743 RFC1 "Subunit of heteropentameric Replication factor C (RF-C)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|E1C339 RFC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEP9 RFC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:97891 Rfc1 "replication factor C (activator 1) 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4I7 RFC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-99 rfc1 "replication factor C (activator 1) 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P35251 RFC1 "Replication factor C subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query790
PRK04195482 PRK04195, PRK04195, replication factor C large sub 4e-61
pfam08519155 pfam08519, RFC1, Replication factor RFC1 C termina 2e-30
PRK07956665 PRK07956, ligA, NAD-dependent DNA ligase LigA; Val 1e-19
PRK00440319 PRK00440, rfc, replication factor C small subunit; 1e-19
COG0272667 COG0272, Lig, NAD-dependent DNA ligase (contains B 4e-19
PLN03025319 PLN03025, PLN03025, replication factor C subunit; 3e-18
COG5275276 COG5275, COG5275, BRCT domain type II [General fun 3e-17
TIGR00575652 TIGR00575, dnlj, DNA ligase, NAD-dependent 6e-17
cd0002772 cd00027, BRCT, Breast Cancer Suppressor Protein (B 8e-16
pfam0053377 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain 7e-15
PHA02544316 PHA02544, 44, clamp loader, small subunit; Provisi 1e-14
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 5e-13
PRK14351689 PRK14351, ligA, NAD-dependent DNA ligase LigA; Pro 2e-12
PRK12402337 PRK12402, PRK12402, replication factor C small sub 5e-12
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 7e-11
pfam00004131 pfam00004, AAA, ATPase family associated with vari 2e-10
PRK04132846 PRK04132, PRK04132, replication factor C small sub 3e-10
PRK14953486 PRK14953, PRK14953, DNA polymerase III subunits ga 3e-07
TIGR02397355 TIGR02397, dnaX_nterm, DNA polymerase III, subunit 7e-07
PRK06195309 PRK06195, PRK06195, DNA polymerase III subunit eps 1e-06
COG2812515 COG2812, DnaX, DNA polymerase III, gamma/tau subun 1e-06
PRK13342413 PRK13342, PRK13342, recombination factor protein R 1e-06
smart00382148 smart00382, AAA, ATPases associated with a variety 3e-06
COG0470230 COG0470, HolB, ATPase involved in DNA replication 3e-06
PRK14962472 PRK14962, PRK14962, DNA polymerase III subunits ga 1e-05
PRK05896 605 PRK05896, PRK05896, DNA polymerase III subunits ga 1e-05
PRK14961363 PRK14961, PRK14961, DNA polymerase III subunits ga 2e-05
pfam03215490 pfam03215, Rad17, Rad17 cell cycle checkpoint prot 2e-05
PRK08691 709 PRK08691, PRK08691, DNA polymerase III subunits ga 3e-05
PRK14965 576 PRK14965, PRK14965, DNA polymerase III subunits ga 3e-05
COG2256436 COG2256, MGS1, ATPase related to the helicase subu 3e-05
PRK06645507 PRK06645, PRK06645, DNA polymerase III subunits ga 5e-05
PRK06063313 PRK06063, PRK06063, DNA polymerase III subunit eps 2e-04
pfam1273863 pfam12738, PTCB-BRCT, twin BRCT domain 4e-04
PRK14970367 PRK14970, PRK14970, DNA polymerase III subunits ga 5e-04
pfam13401124 pfam13401, AAA_22, AAA domain 0.001
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 0.003
PRK14954 620 PRK14954, PRK14954, DNA polymerase III subunits ga 0.004
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information 
 Score =  213 bits (545), Expect = 4e-61
 Identities = 109/349 (31%), Positives = 172/349 (49%), Gaps = 54/349 (15%)

Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGS 405
           W EKYRPKT +++VGN++  +QL  W+  W            GK +      KA +L G 
Sbjct: 4   WVEKYRPKTLSDVVGNEKAKEQLREWIESW----------LKGKPK------KALLLYGP 47

Query: 406 PGMGKTTAAKLVCQMLGFQAIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSAN 465
           PG+GKT+ A  +    G++ IE+NASD R               A+ I+ +    A S +
Sbjct: 48  PGVGKTSLAHALANDYGWEVIELNASDQR--------------TADVIERVAGEAATSGS 93

Query: 466 MDRSKHPKTVLIMDEVDGMSA-GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNY 524
           +      + ++++DEVDG+    DRGG   ++  IK +K PII   ND Y   L+ L N 
Sbjct: 94  L--FGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNA 151

Query: 525 CSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSLSLS 584
           C  + F++   + I   L +I   EG+E ++ AL+E+A+R  GD+R AIN LQ ++    
Sbjct: 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYG 211

Query: 585 VIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS----DPDLVPLL 640
            +  +D++       +D + S F A+D +F     K R  ++   +      DPD +   
Sbjct: 212 KLTLEDVKT---LGRRDREESIFDALDAVF-----KARNADQALEASYDVDEDPDDLIEW 263

Query: 641 IQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNQQWQL 689
           I EN I          E      IARA +++S  DIF  +++R Q + L
Sbjct: 264 IDEN-IPK--------EYDDPEDIARAYDALSRADIFLGRVKRTQNYDL 303

Length = 482
>gnl|CDD|192054 pfam08519, RFC1, Replication factor RFC1 C terminal domain Back     alignment and domain information
>gnl|CDD|236137 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed Back     alignment and domain information
>gnl|CDD|223350 COG0272, Lig, NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional Back     alignment and domain information
>gnl|CDD|227600 COG5275, COG5275, BRCT domain type II [General function prediction only] Back     alignment and domain information
>gnl|CDD|233030 TIGR00575, dnlj, DNA ligase, NAD-dependent Back     alignment and domain information
>gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain Back     alignment and domain information
>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional Back     alignment and domain information
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|184640 PRK14351, ligA, NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional Back     alignment and domain information
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>gnl|CDD|235735 PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein Back     alignment and domain information
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|180377 PRK06063, PRK06063, DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain Back     alignment and domain information
>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 790
KOG1968 871 consensus Replication factor C, subunit RFC1 (larg 100.0
PRK04195482 replication factor C large subunit; Provisional 100.0
KOG1969 877 consensus DNA replication checkpoint protein CHL12 100.0
PF03215519 Rad17: Rad17 cell cycle checkpoint protein 100.0
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 100.0
KOG1970634 consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 100.0
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 100.0
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 99.97
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.97
PLN03025319 replication factor C subunit; Provisional 99.97
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 99.97
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.97
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 99.96
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.96
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.96
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 99.96
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 99.95
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.95
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 99.95
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 99.95
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.95
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 99.95
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 99.95
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 99.95
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 99.95
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 99.94
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 99.94
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 99.94
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 99.94
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 99.94
PRK00440319 rfc replication factor C small subunit; Reviewed 99.94
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 99.94
PRK12402337 replication factor C small subunit 2; Reviewed 99.94
COG2256436 MGS1 ATPase related to the helicase subunit of the 99.94
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 99.94
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 99.93
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 99.93
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 99.93
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 99.93
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 99.93
PHA02544316 44 clamp loader, small subunit; Provisional 99.93
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.93
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 99.92
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 99.92
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 99.92
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 99.92
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 99.91
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 99.91
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.91
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 99.91
PF08519155 RFC1: Replication factor RFC1 C terminal domain; I 99.91
PRK13342413 recombination factor protein RarA; Reviewed 99.9
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.9
PRK13341 725 recombination factor protein RarA/unknown domain f 99.88
KOG2028554 consensus ATPase related to the helicase subunit o 99.88
COG5275276 BRCT domain type II [General function prediction o 99.87
COG2255332 RuvB Holliday junction resolvasome, helicase subun 99.87
PRK04132846 replication factor C small subunit; Provisional 99.86
KOG0990360 consensus Replication factor C, subunit RFC5 [Repl 99.86
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.86
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 99.84
COG0470325 HolB ATPase involved in DNA replication [DNA repli 99.81
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.8
PRK09112351 DNA polymerase III subunit delta'; Validated 99.76
PRK08084235 DNA replication initiation factor; Provisional 99.76
PRK07940394 DNA polymerase III subunit delta'; Validated 99.75
PRK08727233 hypothetical protein; Validated 99.75
PRK06893229 DNA replication initiation factor; Validated 99.75
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 99.74
PTZ001121164 origin recognition complex 1 protein; Provisional 99.73
PRK08903227 DnaA regulatory inactivator Hda; Validated 99.73
PRK06063313 DNA polymerase III subunit epsilon; Provisional 99.72
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.72
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 99.71
PRK07471365 DNA polymerase III subunit delta'; Validated 99.71
PRK05564313 DNA polymerase III subunit delta'; Validated 99.71
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 99.7
PRK06620214 hypothetical protein; Validated 99.7
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 99.7
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.69
PRK06195309 DNA polymerase III subunit epsilon; Validated 99.68
PRK07399314 DNA polymerase III subunit delta'; Validated 99.67
PRK05642234 DNA replication initiation factor; Validated 99.67
KOG0733 802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 99.67
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 99.67
PRK09087226 hypothetical protein; Validated 99.67
PRK00149450 dnaA chromosomal replication initiation protein; R 99.66
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.64
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 99.64
CHL00195489 ycf46 Ycf46; Provisional 99.64
TIGR00362405 DnaA chromosomal replication initiator protein Dna 99.63
PRK14088440 dnaA chromosomal replication initiation protein; P 99.63
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 99.62
PRK12422445 chromosomal replication initiation protein; Provis 99.61
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.61
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 99.6
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.6
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 99.6
CHL00181287 cbbX CbbX; Provisional 99.59
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 99.58
PRK14086617 dnaA chromosomal replication initiation protein; P 99.58
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 99.57
CHL00176638 ftsH cell division protein; Validated 99.57
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.57
PRK14087450 dnaA chromosomal replication initiation protein; P 99.56
PRK08058329 DNA polymerase III subunit delta'; Validated 99.55
KOG0734752 consensus AAA+-type ATPase containing the peptidas 99.55
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 99.55
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 99.55
PRK03992389 proteasome-activating nucleotidase; Provisional 99.55
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.54
PRK05707328 DNA polymerase III subunit delta'; Validated 99.54
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 99.53
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 99.52
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 99.52
PRK07993334 DNA polymerase III subunit delta'; Validated 99.51
PRK06871325 DNA polymerase III subunit delta'; Validated 99.5
TIGR00763775 lon ATP-dependent protease La. This protein is ind 99.5
KOG0731774 consensus AAA+-type ATPase containing the peptidas 99.5
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 99.49
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 99.49
PRK08769319 DNA polymerase III subunit delta'; Validated 99.48
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 99.45
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 99.43
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 99.42
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 99.42
COG0593408 DnaA ATPase involved in DNA replication initiation 99.42
CHL00095 821 clpC Clp protease ATP binding subunit 99.41
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.4
PRK06090319 DNA polymerase III subunit delta'; Validated 99.39
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 99.39
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 99.37
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 99.36
PF00004132 AAA: ATPase family associated with various cellula 99.35
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 99.35
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 99.35
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.34
PRK10865 857 protein disaggregation chaperone; Provisional 99.33
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 99.33
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 99.33
PRK06964342 DNA polymerase III subunit delta'; Validated 99.32
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 99.32
KOG0736953 consensus Peroxisome assembly factor 2 containing 99.32
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 99.32
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 99.31
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 99.3
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 99.3
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 99.3
CHL00206 2281 ycf2 Ycf2; Provisional 99.29
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 99.29
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 99.28
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 99.27
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.27
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 99.26
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 99.26
KOG0652424 consensus 26S proteasome regulatory complex, ATPas 99.25
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 99.24
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 99.23
PRK08699325 DNA polymerase III subunit delta'; Validated 99.23
PRK05917290 DNA polymerase III subunit delta'; Validated 99.22
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.22
KOG0651388 consensus 26S proteasome regulatory complex, ATPas 99.21
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.21
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 99.18
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 99.17
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.17
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 99.17
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 99.16
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 99.15
KOG1514767 consensus Origin recognition complex, subunit 1, a 99.15
PRK05818261 DNA polymerase III subunit delta'; Validated 99.15
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 99.14
CHL00095821 clpC Clp protease ATP binding subunit 99.14
PRK07132299 DNA polymerase III subunit delta'; Validated 99.14
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 99.14
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 99.13
PRK07276290 DNA polymerase III subunit delta'; Validated 99.12
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.11
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 99.11
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 99.1
PRK10865857 protein disaggregation chaperone; Provisional 99.09
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.08
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 99.08
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 99.07
TIGR01817534 nifA Nif-specific regulatory protein. This model r 99.05
KOG1942456 consensus DNA helicase, TBP-interacting protein [R 99.01
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 98.99
PHA02244383 ATPase-like protein 98.98
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 98.97
TIGR02974329 phageshock_pspF psp operon transcriptional activat 98.96
PRK08116268 hypothetical protein; Validated 98.92
PRK12377248 putative replication protein; Provisional 98.92
KOG2680454 consensus DNA helicase TIP49, TBP-interacting prot 98.91
KOG0735 952 consensus AAA+-type ATPase [Posttranslational modi 98.9
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 98.9
PRK15424538 propionate catabolism operon regulatory protein Pr 98.88
TIGR02329526 propionate_PrpR propionate catabolism operon regul 98.86
PRK13531498 regulatory ATPase RavA; Provisional 98.86
PRK11608326 pspF phage shock protein operon transcriptional ac 98.85
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 98.84
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 98.83
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 98.83
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.83
COG2204464 AtoC Response regulator containing CheY-like recei 98.82
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 98.82
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 98.81
COG0714329 MoxR-like ATPases [General function prediction onl 98.81
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 98.81
COG1221403 PspF Transcriptional regulators containing an AAA- 98.8
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 98.8
PRK07952244 DNA replication protein DnaC; Validated 98.79
PRK15429686 formate hydrogenlyase transcriptional activator Fh 98.76
PRK05601377 DNA polymerase III subunit epsilon; Validated 98.76
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 98.75
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 98.73
PRK11331459 5-methylcytosine-specific restriction enzyme subun 98.73
PRK08181269 transposase; Validated 98.73
smart00382148 AAA ATPases associated with a variety of cellular 98.72
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.68
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 98.65
PF13173128 AAA_14: AAA domain 98.64
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.62
PRK06835329 DNA replication protein DnaC; Validated 98.62
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 98.61
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 98.61
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 98.58
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 98.58
KOG0736 953 consensus Peroxisome assembly factor 2 containing 98.55
PRK06526254 transposase; Provisional 98.55
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 98.54
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 98.53
COG3829560 RocR Transcriptional regulator containing PAS, AAA 98.53
PRK06921266 hypothetical protein; Provisional 98.52
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 98.52
PRK08939306 primosomal protein DnaI; Reviewed 98.52
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 98.52
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 98.52
PRK13765 637 ATP-dependent protease Lon; Provisional 98.51
PRK15115444 response regulator GlrR; Provisional 98.5
PRK06581263 DNA polymerase III subunit delta'; Validated 98.48
PRK14700300 recombination factor protein RarA; Provisional 98.48
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 98.48
PF05729166 NACHT: NACHT domain 98.47
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.47
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.46
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 98.43
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.43
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 98.43
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 98.42
smart00350509 MCM minichromosome maintenance proteins. 98.42
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 98.42
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 98.42
COG1484254 DnaC DNA replication protein [DNA replication, rec 98.38
PRK08485206 DNA polymerase III subunit delta'; Validated 98.35
PRK07452326 DNA polymerase III subunit delta; Validated 98.34
PRK09183259 transposase/IS protein; Provisional 98.31
PRK05574340 holA DNA polymerase III subunit delta; Reviewed 98.3
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 98.29
TIGR01128302 holA DNA polymerase III, delta subunit. subunit ar 98.28
KOG0745564 consensus Putative ATP-dependent Clp-type protease 98.27
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.25
PF07726131 AAA_3: ATPase family associated with various cellu 98.25
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.24
PRK10365441 transcriptional regulatory protein ZraR; Provision 98.21
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 98.21
COG1618179 Predicted nucleotide kinase [Nucleotide transport 98.19
PRK05629318 hypothetical protein; Validated 98.15
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 98.13
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 98.11
PRK06585343 holA DNA polymerase III subunit delta; Reviewed 98.04
PHA00729226 NTP-binding motif containing protein 98.02
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.01
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.98
PRK09862506 putative ATP-dependent protease; Provisional 97.95
PRK05907311 hypothetical protein; Provisional 97.93
PHA02774613 E1; Provisional 97.93
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 97.92
PRK04841 903 transcriptional regulator MalT; Provisional 97.92
PRK07914320 hypothetical protein; Reviewed 97.91
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 97.9
PRK04296190 thymidine kinase; Provisional 97.89
PRK04132 846 replication factor C small subunit; Provisional 97.89
PF14516331 AAA_35: AAA-like domain 97.88
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 97.86
PRK13695174 putative NTPase; Provisional 97.82
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 97.78
KOG0477854 consensus DNA replication licensing factor, MCM2 c 97.77
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 97.76
COG0606490 Predicted ATPase with chaperone activity [Posttran 97.75
PTZ00111915 DNA replication licensing factor MCM4; Provisional 97.75
COG1373398 Predicted ATPase (AAA+ superfamily) [General funct 97.74
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 97.7
KOG2170344 consensus ATPase of the AAA+ superfamily [General 97.68
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 97.68
PRK08487328 DNA polymerase III subunit delta; Validated 97.68
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.67
KOG2543438 consensus Origin recognition complex, subunit 5 [R 97.66
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.61
cd01124187 KaiC KaiC is a circadian clock protein primarily f 97.6
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 97.58
COG3283511 TyrR Transcriptional regulator of aromatic amino a 97.56
KOG2228408 consensus Origin recognition complex, subunit 4 [R 97.54
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 97.49
PTZ00202550 tuzin; Provisional 97.49
COG1241682 MCM2 Predicted ATPase involved in replication cont 97.42
TIGR00174287 miaA tRNA isopentenyltransferase (miaA). Catalyzes 97.37
PF07693325 KAP_NTPase: KAP family P-loop domain; InterPro: IP 97.37
PHA02624647 large T antigen; Provisional 97.37
PRK00091307 miaA tRNA delta(2)-isopentenylpyrophosphate transf 97.35
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 97.35
KOG0482721 consensus DNA replication licensing factor, MCM7 c 97.33
PLN02840421 tRNA dimethylallyltransferase 97.32
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 97.31
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.29
COG1466334 HolA DNA polymerase III, delta subunit [DNA replic 97.26
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 97.25
COG0324308 MiaA tRNA delta(2)-isopentenylpyrophosphate transf 97.25
PRK14729300 miaA tRNA delta(2)-isopentenylpyrophosphate transf 97.23
PRK14532188 adenylate kinase; Provisional 97.23
PRK14737186 gmk guanylate kinase; Provisional 97.22
PLN03123981 poly [ADP-ribose] polymerase; Provisional 97.21
PRK11823446 DNA repair protein RadA; Provisional 97.21
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.2
COG3284606 AcoR Transcriptional activator of acetoin/glycerol 97.2
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 97.2
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 97.17
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 97.17
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 97.17
PRK10536262 hypothetical protein; Provisional 97.16
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 97.14
PRK00131175 aroK shikimate kinase; Reviewed 97.14
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 97.13
PRK14738206 gmk guanylate kinase; Provisional 97.13
PRK08118167 topology modulation protein; Reviewed 97.12
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 97.11
PF06144172 DNA_pol3_delta: DNA polymerase III, delta subunit; 97.1
PRK00771437 signal recognition particle protein Srp54; Provisi 97.1
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 97.08
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 97.07
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 97.06
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 97.05
PRK15455 644 PrkA family serine protein kinase; Provisional 97.03
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 97.02
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.0
PRK14974336 cell division protein FtsY; Provisional 97.0
PRK14528186 adenylate kinase; Provisional 97.0
PF10923416 DUF2791: P-loop Domain of unknown function (DUF279 97.0
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 96.99
TIGR02688449 conserved hypothetical protein TIGR02688. Members 96.98
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 96.97
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.95
PRK03839180 putative kinase; Provisional 96.94
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 96.94
PRK09361225 radB DNA repair and recombination protein RadB; Pr 96.94
PRK08533230 flagellar accessory protein FlaH; Reviewed 96.93
cd01128249 rho_factor Transcription termination factor rho is 96.93
PRK13947171 shikimate kinase; Provisional 96.93
cd03115173 SRP The signal recognition particle (SRP) mediates 96.9
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 96.89
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 96.88
COG1936180 Predicted nucleotide kinase (related to CMP and AM 96.87
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 96.87
PRK00625173 shikimate kinase; Provisional 96.87
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 96.86
KOG0478804 consensus DNA replication licensing factor, MCM4 c 96.85
COG4088261 Predicted nucleotide kinase [Nucleotide transport 96.85
PF12780268 AAA_8: P-loop containing dynein motor region D4; I 96.85
COG4650531 RtcR Sigma54-dependent transcription regulator con 96.84
TIGR02237209 recomb_radB DNA repair and recombination protein R 96.83
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 96.82
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 96.82
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 96.8
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 96.8
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 96.78
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 96.78
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 96.76
PRK13949169 shikimate kinase; Provisional 96.76
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 96.75
PRK13808333 adenylate kinase; Provisional 96.74
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 96.72
PLN02674244 adenylate kinase 96.72
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 96.72
TIGR02012321 tigrfam_recA protein RecA. This model describes or 96.72
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 96.72
PLN02748468 tRNA dimethylallyltransferase 96.71
PRK06067234 flagellar accessory protein FlaH; Validated 96.71
PRK10875615 recD exonuclease V subunit alpha; Provisional 96.71
cd03216163 ABC_Carb_Monos_I This family represents the domain 96.7
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.7
PRK13889 988 conjugal transfer relaxase TraA; Provisional 96.7
PRK06762166 hypothetical protein; Provisional 96.69
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 96.68
cd00983325 recA RecA is a bacterial enzyme which has roles in 96.68
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 96.68
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 96.68
PRK07261171 topology modulation protein; Provisional 96.68
COG0194191 Gmk Guanylate kinase [Nucleotide transport and met 96.67
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 96.66
PRK14531183 adenylate kinase; Provisional 96.64
PRK06217183 hypothetical protein; Validated 96.64
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 96.64
PRK06696223 uridine kinase; Validated 96.63
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 96.63
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 96.63
smart00072184 GuKc Guanylate kinase homologues. Active enzymes c 96.63
PRK14530215 adenylate kinase; Provisional 96.62
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 96.6
cd01394218 radB RadB. The archaeal protein radB shares simila 96.59
PRK05973237 replicative DNA helicase; Provisional 96.59
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 96.59
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 96.58
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 96.57
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 96.57
TIGR03574249 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem 96.56
cd03246173 ABCC_Protease_Secretion This family represents the 96.56
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 96.55
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 96.55
smart00534185 MUTSac ATPase domain of DNA mismatch repair MUTS f 96.55
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 96.55
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 96.53
PRK12337475 2-phosphoglycerate kinase; Provisional 96.53
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 96.51
smart00487201 DEXDc DEAD-like helicases superfamily. 96.51
TIGR02533486 type_II_gspE general secretory pathway protein E. 96.51
TIGR00767415 rho transcription termination factor Rho. Members 96.5
COG4619223 ABC-type uncharacterized transport system, ATPase 96.5
PRK10867433 signal recognition particle protein; Provisional 96.5
PF05272198 VirE: Virulence-associated protein E; InterPro: IP 96.5
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 96.48
PRK06547172 hypothetical protein; Provisional 96.48
cd03284216 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr 96.47
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 96.47
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 96.46
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.46
PRK13948182 shikimate kinase; Provisional 96.46
COG0703172 AroK Shikimate kinase [Amino acid transport and me 96.45
PRK13826 1102 Dtr system oriT relaxase; Provisional 96.44
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 96.44
PRK13946184 shikimate kinase; Provisional 96.44
PRK03731171 aroL shikimate kinase II; Reviewed 96.43
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 96.42
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.42
COG2842297 Uncharacterized ATPase, putative transposase [Gene 96.41
COG1485367 Predicted ATPase [General function prediction only 96.4
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 96.39
PTZ00088229 adenylate kinase 1; Provisional 96.39
PTZ00293211 thymidine kinase; Provisional 96.38
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 96.37
PF1324576 AAA_19: Part of AAA domain 96.37
PRK02496184 adk adenylate kinase; Provisional 96.36
TIGR01613304 primase_Cterm phage/plasmid primase, P4 family, C- 96.35
PRK13833323 conjugal transfer protein TrbB; Provisional 96.35
PRK04040188 adenylate kinase; Provisional 96.33
cd03287222 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS 96.32
TIGR00064272 ftsY signal recognition particle-docking protein F 96.3
PRK10436462 hypothetical protein; Provisional 96.29
PF00488235 MutS_V: MutS domain V C-terminus.; InterPro: IPR00 96.29
PRK05057172 aroK shikimate kinase I; Reviewed 96.29
PF00625183 Guanylate_kin: Guanylate kinase; InterPro: IPR0081 96.29
PLN02200234 adenylate kinase family protein 96.28
PRK14527191 adenylate kinase; Provisional 96.27
PRK09376416 rho transcription termination factor Rho; Provisio 96.27
PRK09354349 recA recombinase A; Provisional 96.26
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 96.24
COG1066456 Sms Predicted ATP-dependent serine protease [Postt 96.24
PF13479213 AAA_24: AAA domain 96.23
TIGR01351210 adk adenylate kinases. Adenylate kinase (EC 2.7.4. 96.22
PRK13894319 conjugal transfer ATPase TrbB; Provisional 96.21
PRK00279215 adk adenylate kinase; Reviewed 96.2
PRK08154309 anaerobic benzoate catabolism transcriptional regu 96.17
PRK01184184 hypothetical protein; Provisional 96.17
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 96.15
cd01393226 recA_like RecA is a bacterial enzyme which has rol 96.15
PRK10416318 signal recognition particle-docking protein FtsY; 96.15
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 96.13
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 96.13
PRK04182180 cytidylate kinase; Provisional 96.11
PF08433270 KTI12: Chromatin associated protein KTI12 ; InterP 96.11
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 96.11
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 96.1
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 96.09
PRK04328249 hypothetical protein; Provisional 96.08
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 96.06
PRK14529223 adenylate kinase; Provisional 96.02
PHA02530300 pseT polynucleotide kinase; Provisional 96.01
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 96.01
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 96.01
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 96.01
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 96.0
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 96.0
TIGR02173171 cyt_kin_arch cytidylate kinase, putative. Proteins 95.99
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 95.99
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 95.98
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 95.97
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.94
PRK00300205 gmk guanylate kinase; Provisional 95.93
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 95.91
cd03215182 ABC_Carb_Monos_II This family represents domain II 95.9
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 95.9
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 95.9
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-55  Score=520.20  Aligned_cols=572  Identities=31%  Similarity=0.440  Sum_probs=432.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcEEEEEecCCCCCHHHHHHHHHHcCCEecccccccccEEEecCCCCcchHHHHHHhCCc
Q 003873          187 KDPPHKGEKEVPEGAPDCLGGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIAGAKSTKAKELGTP  266 (790)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~~vs~kt~~lv~G~~~g~~K~~kA~~~~i~  266 (790)
                      ..+.++..++.|.+.++|+.|.+|++||.++.+.|..++.+++.+|+.++.+++.+|+++++|+++++.|++.++++.|+
T Consensus       156 ~~k~~p~~k~~~~~~~~~~s~~~~~~tg~ld~~~~~s~~~~~k~~~~~~~~~ls~kt~~s~~~~e~~~~kle~~~~~~~~  235 (871)
T KOG1968|consen  156 ELKKNPEEKPTPLDWSKPLSGIKFTPTGVLDDIGTGSAEPSLKEFGASKTESLSDKTVESCLGDEAIAKKLEKIKELEIP  235 (871)
T ss_pred             ccccCccccCCcccccCCCcCceeeecCcccccccccchhhhhhccccccccCCCCcceeecCccccchhhccccccccc
Confidence            34467788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCHHHHHHHHhhcCCch----HHHHHhhhhhHHHHHhcCCCCCCchhhhcccCCCCCcccc-ccccCCCCCCCCCcCCC
Q 003873          267 FLTEDGLFDMIRASKPMK----ALAQAESKKSVEKVAASLPKKSPQNIEAKSTSAPKAPIER-MKTVASPAKRKGQNIQQ  341 (790)
Q Consensus       267 ii~e~~f~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  341 (790)
                      ++.|+ +...+... +..    +.+.....+. +....+    +....+.. . ......+. ......-.... .....
T Consensus       236 ~~~e~-~~~~~~~~-~~~~~~~~kvk~a~~~~-e~~e~~----s~~~~e~~-t-~~~~~~~~~~~~~~~~~~~~-P~~~~  305 (871)
T KOG1968|consen  236 VLLEE-RKELFAPL-LALQKDEPKVKKARRKS-EEGETS----SSKKAEKP-T-ARKRKSNKVIQFSEPRKAYS-PAKSS  305 (871)
T ss_pred             ccchh-hhhhhcch-hcccCCcccchhhhhhh-hhhccc----cccccccc-c-cccccccchhcccccccccC-Ccccc
Confidence            99999 65554321 111    1111100000 000000    00000000 0 00000000 00000000000 01122


Q ss_pred             ccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCc-EEEEECCCCCChHHHHHHHHHH
Q 003873          342 SSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEK-AAILSGSPGMGKTTAAKLVCQM  420 (790)
Q Consensus       342 ~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~-~lLLsGPpGtGKTTlA~~lAke  420 (790)
                      ....|++||+|+...+++|+......+..||..|++. -....+...    .....+ +++++||||+|||++++++|++
T Consensus       306 ~~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~-~~~sy~~~~----~~ss~~~~~l~~G~pGigKT~~~h~~~k~  380 (871)
T KOG1968|consen  306 EGAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDK-EKSSYKENE----PDSSKKKALLLSGPPGIGKTTAAHKAAKE  380 (871)
T ss_pred             cccccccccccccHHhhhcccchhhhhhhHHHhhhcc-ccccccccC----cchhhHHHHHhcCCCCCCchhhHhhhhhh
Confidence            3689999999999999999999999999999999553 111111111    111223 6899999999999999999999


Q ss_pred             hCCcEEEEeCCCCCCchhhhhhcccCC-CchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHh
Q 003873          421 LGFQAIEVNASDSRGKADAKISKGIGG-SNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASI  499 (790)
Q Consensus       421 lg~~iiEinaSd~rsk~~~~i~~~~g~-s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i  499 (790)
                      +|+.++|.|+++.|++..  +...++. .....+...+..  ... .........||||||+|.|+.++++++..+...+
T Consensus       381 ~g~~v~E~Nas~~RSk~~--l~~~~~~~~~s~si~~~~~~--~~~-~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~  455 (871)
T KOG1968|consen  381 LGFKVVEKNASDVRSKKE--LLNKLGNATSSHSIKGSKKK--KGN-RQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLC  455 (871)
T ss_pred             cccceeecCccccccccH--HHhhhhccccccchhhhhcc--ccc-ccccccceeEEEEeccccccchhhhhHHHHHHHH
Confidence            999999999999998753  2222222 122223333311  000 0111233459999999999999999999999999


Q ss_pred             hcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 003873          500 KISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYM  579 (790)
Q Consensus       500 ~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~  579 (790)
                      +.+..||||||||+.+...+++.+.|+.++|..|..+.+..+|+.+|..|++.|++..++.|++.++||||++|++||+|
T Consensus       456 ~ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~  535 (871)
T KOG1968|consen  456 KKSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFW  535 (871)
T ss_pred             HhccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCC---CcccHHHHHhhcCCCcchHHHHHHHHhhhhcCCCCCCc
Q 003873          580 SLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG---GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRD  656 (790)
Q Consensus       580 ~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~---~~~~~~e~id~~~~d~~~~~l~i~ENYl~~~~~~~~~~  656 (790)
                      +..............+....++..+..|++..++|.+.+   .....++..++||.|+.+.|+++++||+++.+.... .
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~L~~~~~~s~~~~~~~k~~~~~ed~~~~p~~v~~n~~~~~~~~~~-~  614 (871)
T KOG1968|consen  536 SLSKPAELPKKKGTPIKTSKKNITVKDFDAAEGLLDISRVASEETSNQSKAELYFEDYSISPLKVQENYLQVLPRSMK-Q  614 (871)
T ss_pred             hccchhhhccccCccccccccccccchhHHHhhhccHhhhhhhhhhccchHHHhccccccchhhcchhhhcccchhhh-h
Confidence            876332111111122333457888899999999998321   223567789999999999999999999999887432 2


Q ss_pred             hHHhHHHHHHHHHhcChhhHhhhHhhcc-cccchhcccchhhcccchhhhccCcchhcccccccccccchhhhhchhhHH
Q 003873          657 EVKRLSLIARAAESISDGDIFNVQIRRN-QQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKN  735 (790)
Q Consensus       657 ~~~~l~~~~~aad~lS~aD~v~~~i~~~-q~wsL~~~~~~~ssv~p~~~~~g~~~~~~~g~~~~~~Fp~wlgk~s~~~K~  735 (790)
                      ...+++.+++++|+||.+|++...+++- +.|.|+++|++++.+.|+..+.|...       +.+.||+|+++|++.++.
T Consensus       615 ~~~~l~~~~~~ad~is~~d~~~~~~r~~~~~~~L~~~~a~~s~~~p~~~~~~~~~-------~~i~f~~~~~~~sk~~~~  687 (871)
T KOG1968|consen  615 ILDELEDVSEAADSISLGDLRPKSIRGPELDWKLNPLHAVDSKVLPASKVGGHLL-------FRLGFPQWLGENSKSGKL  687 (871)
T ss_pred             hHHHHHHHhhhhhhhhhhhhcchhhcCccchhhhhhhhhhhhhhcchhhhhhccc-------cccccccccCccccccch
Confidence            2367889999999999999999999985 55999999999999999997777643       346799999999999999


Q ss_pred             HHHHHHHHHhhccccccccCchhhhhccHHHHHHHhchhhhcCCcchHHHhhhc
Q 003873          736 LRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLS  789 (790)
Q Consensus       736 ~r~l~el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l~~pL~~~~~~~~v~~vi~  789 (790)
                      .|++++++.|++..  .+..+..++.+|.|.+++.+..|+.... .|++..+|+
T Consensus       688 ~~~l~el~~h~~~~--~s~~~~~~~~~y~~i~~~~~~~~~~~~~-~d~~p~~i~  738 (871)
T KOG1968|consen  688 KRFLQELLPHTRLK--QSANKARVRESYNPISRQFSPVPLALQS-KDGKPSAIE  738 (871)
T ss_pred             hHHHHHhchhhhhh--hccchhhhhhhhhhhhhhccCCcccccc-CCCCchhHH
Confidence            99999999999875  4778899999999999999999999876 456666654

>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF08519 RFC1: Replication factor RFC1 C terminal domain; InterPro: IPR013725 This is the C-terminal domain of replication factor C, RFC1 Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>COG5275 BRCT domain type II [General function prediction only] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK06581 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14700 recombination factor protein RarA; Provisional Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08485 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07452 DNA polymerase III subunit delta; Validated Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK05574 holA DNA polymerase III subunit delta; Reviewed Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>TIGR01128 holA DNA polymerase III, delta subunit Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05629 hypothetical protein; Validated Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PRK06585 holA DNA polymerase III subunit delta; Reviewed Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PRK05907 hypothetical protein; Provisional Back     alignment and domain information
>PHA02774 E1; Provisional Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK07914 hypothetical protein; Reviewed Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PRK08487 DNA polymerase III subunit delta; Validated Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00174 miaA tRNA isopentenyltransferase (miaA) Back     alignment and domain information
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] Back     alignment and domain information
>PLN02840 tRNA dimethylallyltransferase Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional Back     alignment and domain information
>PRK14532 adenylate kinase; Provisional Back     alignment and domain information
>PRK14737 gmk guanylate kinase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PRK14738 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK14528 adenylate kinase; Provisional Back     alignment and domain information
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PRK13808 adenylate kinase; Provisional Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PLN02674 adenylate kinase Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>PLN02748 tRNA dimethylallyltransferase Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PRK14531 adenylate kinase; Provisional Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>smart00072 GuKc Guanylate kinase homologues Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12337 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>PRK13946 shikimate kinase; Provisional Back     alignment and domain information
>PRK03731 aroL shikimate kinase II; Reviewed Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only] Back     alignment and domain information
>COG1485 Predicted ATPase [General function prediction only] Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK02496 adk adenylate kinase; Provisional Back     alignment and domain information
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PF00488 MutS_V: MutS domain V C-terminus Back     alignment and domain information
>PRK05057 aroK shikimate kinase I; Reviewed Back     alignment and domain information
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 Back     alignment and domain information
>PLN02200 adenylate kinase family protein Back     alignment and domain information
>PRK14527 adenylate kinase; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>TIGR01351 adk adenylate kinases Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PRK00279 adk adenylate kinase; Reviewed Back     alignment and domain information
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>PRK01184 hypothetical protein; Provisional Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>PRK04182 cytidylate kinase; Provisional Back     alignment and domain information
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>PRK14529 adenylate kinase; Provisional Back     alignment and domain information
>PHA02530 pseT polynucleotide kinase; Provisional Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02173 cyt_kin_arch cytidylate kinase, putative Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query790
1sxj_A516 Crystal Structure Of The Eukaryotic Clamp Loader (R 2e-48
2k7f_A109 Haddock Calculated Model Of The Complex Between The 1e-24
2ebu_A112 Solution Structure Of The Brct Domain From Human Re 4e-23
2chq_A319 Replication Factor C Adpnp Complex Length = 319 4e-16
1iqp_A327 Crystal Structure Of The Clamp Loader Small Subunit 1e-15
2chg_A226 Replication Factor C Domains 1 And 2 Length = 226 4e-15
1sxj_B323 Crystal Structure Of The Eukaryotic Clamp Loader (R 4e-14
1l7b_A92 Solution Nmr Structure Of Brct Domain Of T. Thermop 2e-11
1sxj_C340 Crystal Structure Of The Eukaryotic Clamp Loader (R 4e-10
1dgs_A667 Crystal Structure Of Nad+-Dependent Dna Ligase From 4e-09
1sxj_D353 Crystal Structure Of The Eukaryotic Clamp Loader (R 5e-08
2owo_A671 Last Stop On The Road To Repair: Structure Of E.Col 5e-05
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 516 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/425 (32%), Positives = 205/425 (48%), Gaps = 38/425 (8%)
Query: 346 WTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQ---NDASAEKAAIL 402
           WT KY P    ++ GN+  V +L  WLA+W        +K+N  K    + +   +AA+L
Sbjct: 29  WTVKYAPTNLQQVCGNKGSVMKLKNWLANWEN------SKKNSFKHAGKDGSGVFRAAML 82
Query: 403 SGSPGMGKTTAAKLVCQMLGFQAIEVNASDSRGKA--DAKISKGIGGSNANSIKELVSNE 460
            G PG+GKTTAA LV Q LG+  +E NASD R K   +A +   +   N + +     NE
Sbjct: 83  YGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNAL--DNMSVVGYFKHNE 140
Query: 461 ALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLXXXXXXXXXXXXXXXNDRYSQKLKS 520
             + N++  KH   V+IMDEVDGMS GDRGG+  L               N+R   K++ 
Sbjct: 141 E-AQNLN-GKH--FVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRP 196
Query: 521 LVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMS 580
               C D++FR+P    I  RLM IA  E  +++   ++ L     GDIR  IN L  +S
Sbjct: 197 FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTIS 256
Query: 581 LSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF------GFNGGKLRMDERIDLSMSDP 634
            +   I +++I +   +  K+  + PF    K+               ++++I L   D 
Sbjct: 257 TTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDF 316
Query: 635 DLVPLLIQENYINYRPSSAGRDEVKRLSLIARAAESISDGDIFNVQIRRNXXXXXXXXXX 694
           D  PL+IQENY++ RPS     +   L  +A AA  IS GDI   +IR +          
Sbjct: 317 DFTPLMIQENYLSTRPSVLKPGQ-SHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLH 375
Query: 695 XA-SCIIPAALMHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHFHHLASRKSK 753
              S + PA+ + G       G  NF     WLG+NS   K  RLL+++H+H      ++
Sbjct: 376 AVLSSVYPASKVAGHMA----GRINFT---AWLGQNSKSAKYYRLLQEIHYH------TR 422
Query: 754 LGRDT 758
           LG  T
Sbjct: 423 LGTST 427
>pdb|2K7F|A Chain A, Haddock Calculated Model Of The Complex Between The Brct Region Of Rfc P140 And Dsdna Length = 109 Back     alignment and structure
>pdb|2EBU|A Chain A, Solution Structure Of The Brct Domain From Human Replication Factor C Large Subunit 1 Length = 112 Back     alignment and structure
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319 Back     alignment and structure
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 Back     alignment and structure
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226 Back     alignment and structure
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323 Back     alignment and structure
>pdb|1L7B|A Chain A, Solution Nmr Structure Of Brct Domain Of T. Thermophilus: Northeast Structural Genomics Consortium Target Wr64tt Length = 92 Back     alignment and structure
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340 Back     alignment and structure
>pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T. Filiformis Length = 667 Back     alignment and structure
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353 Back     alignment and structure
>pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna Ligase Bound To Nicked Dna-Adenylate Length = 671 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query790
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 100.0
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 99.95
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 99.92
2chq_A319 Replication factor C small subunit; DNA-binding pr 99.92
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 99.92
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 99.91
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 99.91
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 99.91
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.9
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 99.9
3pvs_A447 Replication-associated recombination protein A; ma 99.9
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 99.9
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 99.89
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 99.88
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.88
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.83
3bos_A242 Putative DNA replication factor; P-loop containing 99.82
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 99.82
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 99.81
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 99.81
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 99.8
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.79
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 99.79
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.77
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 99.77
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.77
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 99.76
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 99.76
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 99.75
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 99.75
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 99.74
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 99.74
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.73
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 99.73
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.73
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 99.73
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 99.72
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 99.72
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 99.72
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 99.72
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 99.72
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 99.71
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 99.71
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 99.7
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 99.7
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 99.69
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 99.68
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 99.68
2gno_A305 DNA polymerase III, gamma subunit-related protein; 99.67
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 99.65
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.64
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.63
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 99.62
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.61
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.6
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 99.6
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.59
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.58
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.58
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.57
2r62_A268 Cell division protease FTSH homolog; ATPase domain 99.56
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 99.55
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.55
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 99.55
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 99.54
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.54
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 99.54
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 99.53
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.53
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.52
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 99.51
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 99.49
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.48
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.46
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.46
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.45
1ojl_A304 Transcriptional regulatory protein ZRAR; response 99.44
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 99.44
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 99.41
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.39
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 99.38
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.38
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 99.35
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 99.32
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 99.27
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 99.26
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 99.24
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 99.23
3co5_A143 Putative two-component system transcriptional RES 99.22
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 99.19
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 99.17
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.17
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 99.11
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 99.03
2fna_A357 Conserved hypothetical protein; structural genomic 98.99
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 98.97
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 98.92
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 98.86
2qgz_A308 Helicase loader, putative primosome component; str 98.86
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 98.79
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.75
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 98.7
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 98.65
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 98.64
1tue_A212 Replication protein E1; helicase, replication, E1E 98.62
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 98.58
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 98.56
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 98.53
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 98.52
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 98.48
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 98.34
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 98.33
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 98.1
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 98.09
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 98.08
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 98.02
3f8t_A506 Predicted ATPase involved in replication control, 97.93
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 97.85
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 97.85
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 97.79
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 97.78
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 97.72
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 97.71
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 97.65
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 97.61
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 97.6
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 97.58
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.58
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 97.52
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 97.5
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 97.47
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 97.45
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 97.43
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 97.43
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.42
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 97.4
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 97.38
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 97.38
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 97.26
1t15_A214 Breast cancer type 1 susceptibility protein; prote 97.25
1xp8_A366 RECA protein, recombinase A; recombination, radior 97.25
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 97.23
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 97.23
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 97.21
1u94_A356 RECA protein, recombinase A; homologous recombinat 97.19
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 97.14
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 97.14
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 97.14
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 97.12
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 97.11
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 97.07
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 97.06
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 97.06
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 97.05
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 97.04
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 97.03
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 97.03
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.03
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 96.99
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.97
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 96.97
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 96.91
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 96.89
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 96.87
2z43_A324 DNA repair and recombination protein RADA; archaea 96.87
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 96.86
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 96.85
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 96.84
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 96.84
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.84
1kag_A173 SKI, shikimate kinase I; transferase, structural g 96.83
1via_A175 Shikimate kinase; structural genomics, transferase 96.83
4a74_A231 DNA repair and recombination protein RADA; hydrola 96.81
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 96.8
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 96.75
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 96.74
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 96.7
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 96.7
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 96.7
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 96.69
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 96.68
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 96.68
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 96.68
2r6a_A454 DNAB helicase, replicative helicase; replication, 96.67
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 96.67
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 96.65
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 96.65
3io5_A333 Recombination and repair protein; storage dimer, i 96.64
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 96.63
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 96.62
2vli_A183 Antibiotic resistance protein; transferase, tunica 96.61
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 96.6
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 96.6
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 96.59
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 96.58
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 96.58
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 96.57
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 96.56
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 96.56
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 96.56
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 96.53
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.53
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 96.52
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 96.49
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 96.49
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 96.48
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 96.48
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 96.47
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 96.47
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 96.47
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 96.43
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 96.43
2eyu_A261 Twitching motility protein PILT; pilus retraction 96.41
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 96.41
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 96.41
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 96.38
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 96.35
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 96.35
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 96.35
3tlx_A243 Adenylate kinase 2; structural genomics, structura 96.34
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 96.33
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 96.33
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.33
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 96.33
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 96.31
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 96.3
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 96.28
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 96.28
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 96.25
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 96.22
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.2
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 96.19
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 96.19
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 96.17
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 96.15
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 96.13
1t15_A214 Breast cancer type 1 susceptibility protein; prote 96.12
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 96.11
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 96.1
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 96.09
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 96.09
2ewv_A372 Twitching motility protein PILT; pilus retraction 96.08
3r20_A233 Cytidylate kinase; structural genomics, seattle st 96.07
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 96.07
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 96.06
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 96.02
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 96.01
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 95.96
3b6e_A216 Interferon-induced helicase C domain-containing P; 95.96
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 95.94
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 95.94
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 95.91
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 95.89
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 95.88
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 95.86
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 95.86
1vma_A306 Cell division protein FTSY; TM0570, structural gen 95.85
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 95.84
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 95.79
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 95.77
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 95.76
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 95.75
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 95.75
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 95.75
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 95.67
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 95.64
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 95.61
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 95.61
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 95.58
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 95.57
3t1o_A198 Gliding protein MGLA; G domain containing protein, 95.56
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 95.49
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 95.48
2h92_A219 Cytidylate kinase; rossmann fold, transferase; HET 95.47
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 95.46
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 95.45
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 95.39
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 95.37
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 95.33
1ltq_A301 Polynucleotide kinase; phosphatase, alpha/beta, P- 95.31
2f6r_A281 COA synthase, bifunctional coenzyme A synthase; 18 95.28
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 95.26
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 95.25
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 95.25
3fdi_A201 Uncharacterized protein; cytidylate kinase like pr 95.24
1z0f_A179 RAB14, member RAS oncogene family; RAB GTPase, ves 95.23
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 95.23
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 95.16
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 95.16
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 95.15
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 95.1
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 95.08
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 95.07
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 95.05
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 95.01
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 95.0
4dkx_A216 RAS-related protein RAB-6A; GTP binding fold, memb 94.95
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 94.94
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 94.92
3lxw_A247 GTPase IMAP family member 1; immunity, structural 94.89
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 94.88
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 94.85
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 94.82
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 94.81
3eph_A409 TRNA isopentenyltransferase; transferase, alternat 94.78
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 94.78
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 94.77
1nrj_B218 SR-beta, signal recognition particle receptor beta 94.75
3dz8_A191 RAS-related protein RAB-3B; GDP, GTPase, structura 94.72
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 94.71
3tkl_A196 RAS-related protein RAB-1A; vesicle trafficking, p 94.69
2p5s_A199 RAS and EF-hand domain containing; G-protein, RAB, 94.69
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 94.62
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 94.57
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 94.56
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 94.54
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 94.52
2efe_B181 Small GTP-binding protein-like; GEF, GTPase, VPS9, 94.52
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 94.5
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 94.45
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 94.45
2fg5_A192 RAB-22B, RAS-related protein RAB-31; G-protein, GT 94.44
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 94.42
3hdt_A223 Putative kinase; structura genomics, PSI-2, protei 94.39
2bme_A186 RAB4A, RAS-related protein RAB4A; GTP-binding prot 94.36
1p9r_A418 General secretion pathway protein E; bacterial typ 94.33
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 94.31
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 94.31
2oil_A193 CATX-8, RAS-related protein RAB-25; G-protein, GDP 94.3
2il1_A192 RAB12; G-protein, GDP, GTPase, predicted, structur 94.28
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 94.26
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 94.25
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 94.24
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 94.24
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 94.22
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 94.21
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 94.2
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 94.16
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 94.14
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 94.13
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 94.12
3llu_A196 RAS-related GTP-binding protein C; structural geno 94.08
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 94.07
2y8e_A179 RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti 94.05
1r8s_A164 ADP-ribosylation factor 1; protein transport/excha 94.03
2hup_A201 RAS-related protein RAB-43; G-protein, GDP, struct 94.02
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 93.94
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 93.91
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 93.91
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 93.89
3bc1_A195 RAS-related protein RAB-27A; RAB27, GTPase, RAB, s 93.87
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 93.85
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 93.85
3gmt_A230 Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle 93.84
1x6v_B 630 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 93.83
3pqc_A195 Probable GTP-binding protein ENGB; rossmann fold, 93.82
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 93.81
1z06_A189 RAS-related protein RAB-33B; RAB GTPase, RAB33B GT 93.8
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 93.76
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 93.76
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 93.69
3bor_A237 Human initiation factor 4A-II; translation initiat 93.69
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 93.68
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 93.66
1g16_A170 RAS-related protein SEC4; G protein RAB, signaling 93.63
3lxx_A239 GTPase IMAP family member 4; structural genomics c 93.61
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 93.58
2wsm_A221 Hydrogenase expression/formation protein (HYPB); m 93.51
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 93.51
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 93.5
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 93.5
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 93.45
2ew1_A201 RAS-related protein RAB-30; G-protein, GTP analogu 93.43
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 93.42
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 93.37
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 93.36
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 93.35
2a9k_A187 RAS-related protein RAL-A; bacterial ADP-ribosyltr 93.35
1xjc_A169 MOBB protein homolog; structural genomics, midwest 93.33
3h1t_A590 Type I site-specific restriction-modification syst 93.33
1ky3_A182 GTP-binding protein YPT7P; vesicular traffic, GTP 93.33
3cph_A213 RAS-related protein SEC4; RAB GTPase, prenylation, 93.3
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 93.27
4djt_A218 GTP-binding nuclear protein GSP1; structural genom 93.27
2a5j_A191 RAS-related protein RAB-2B; GTPase, signal transdu 93.27
1zbd_A203 Rabphilin-3A; G protein, effector, RABCDR, synapti 93.23
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 93.13
1zd9_A188 ADP-ribosylation factor-like 10B; transport protei 93.13
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 93.12
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 93.07
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 93.07
3p32_A355 Probable GTPase RV1496/MT1543; structural genomics 93.06
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 93.03
1fzq_A181 ADP-ribosylation factor-like protein 3; protein-GD 93.02
2g6b_A180 RAS-related protein RAB-26; G-protein, GTP analogu 93.02
2gf9_A189 RAS-related protein RAB-3D; G-protein, structural 93.0
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 92.93
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 92.91
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 92.85
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 92.84
1yks_A440 Genome polyprotein [contains: flavivirin protease 92.82
2bov_A206 RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, 92.8
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 92.8
1upt_A171 ARL1, ADP-ribosylation factor-like protein 1; hydr 92.79
2ocp_A241 DGK, deoxyguanosine kinase; protein-nucleotide com 92.78
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 92.78
4a82_A578 Cystic fibrosis transmembrane conductance regulat; 92.78
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 92.76
3kkq_A183 RAS-related protein M-RAS; GTP-binding, GTPase, si 92.75
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 92.72
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 92.72
3clv_A208 RAB5 protein, putative; malaria, GTPase, structura 92.7
2oap_1511 GSPE-2, type II secretion system protein; hexameri 92.66
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 92.64
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 92.61
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 92.6
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 92.59
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 92.59
3tqf_A181 HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co 92.57
1g8f_A511 Sulfate adenylyltransferase; alpha-beta protein, b 92.55
2hf9_A226 Probable hydrogenase nickel incorporation protein 92.54
3v9p_A227 DTMP kinase, thymidylate kinase; ssgcid, STRU geno 92.48
3qf4_B598 Uncharacterized ABC transporter ATP-binding prote 92.47
2o52_A200 RAS-related protein RAB-4B; G-protein, GDP, struct 92.44
2fh5_B214 SR-beta, signal recognition particle receptor beta 92.43
1m2o_B190 GTP-binding protein SAR1, GTP binding protein; zin 92.41
2yl4_A595 ATP-binding cassette SUB-family B member 10, mitoc 92.4
2axn_A520 6-phosphofructo-2-kinase/fructose-2,6- biphosphata 92.39
1x3s_A195 RAS-related protein RAB-18; GTPase, GNP, structura 92.38
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 92.36
1p5z_B263 DCK, deoxycytidine kinase; nucleoside kinase, P-lo 92.35
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 92.35
2xxa_A433 Signal recognition particle protein; protein trans 92.26
2atv_A196 RERG, RAS-like estrogen-regulated growth inhibitor 92.26
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 92.26
2bcg_Y206 Protein YP2, GTP-binding protein YPT1; RABGTPase, 92.22
1m8p_A573 Sulfate adenylyltransferase; rossmann fold, phosph 92.2
3kta_A182 Chromosome segregation protein SMC; structural mai 92.14
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 92.12
4i1u_A210 Dephospho-COA kinase; structural genomics, niaid, 91.94
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 91.91
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 91.9
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 91.9
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 91.88
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 91.84
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 91.83
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 91.82
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 91.78
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 91.78
2fu5_C183 RAS-related protein RAB-8A; MSS4:RAB8 protein comp 91.74
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 91.72
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 91.67
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 91.66
3qf4_A587 ABC transporter, ATP-binding protein; multidrug tr 91.66
2og2_A359 Putative signal recognition particle receptor; nuc 91.64
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 91.62
1c9k_A180 COBU, adenosylcobinamide kinase; alpha/beta struct 91.59
1zj6_A187 ADP-ribosylation factor-like protein 5; ARL, GTP-b 91.56
1b0u_A262 Histidine permease; ABC transporter, transport pro 91.51
3b1v_A272 Ferrous iron uptake transporter protein B; G prote 91.47
3cpj_B223 GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl 91.43
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 91.42
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 91.34
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 91.33
3tmk_A216 Thymidylate kinase; phosphotransferase; HET: T5A; 91.33
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 91.32
3iby_A256 Ferrous iron transport protein B; G protein, G dom 91.27
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 91.26
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 91.22
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 91.14
1sgw_A214 Putative ABC transporter; structural genomics, P p 91.14
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 91.07
1mky_A439 Probable GTP-binding protein ENGA; GTPase, DER, KH 91.05
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 91.02
1g6h_A257 High-affinity branched-chain amino acid transport 91.0
1ji0_A240 ABC transporter; ATP binding protein, structural g 90.98
2h57_A190 ADP-ribosylation factor-like protein 6; GTP, GTPas 90.97
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 90.94
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 90.94
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 90.93
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 90.92
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 90.92
2ghi_A260 Transport protein; multidrug resistance protein, M 90.9
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 90.9
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 90.88
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 90.85
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 90.82
3a1s_A258 Iron(II) transport protein B; FEOB, iron transport 90.82
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 90.79
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 90.78
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 90.77
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 90.69
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 90.66
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 90.65
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 90.61
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 90.57
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 90.51
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 90.51
1g29_1372 MALK, maltose transport protein MALK; ATPase, acti 90.45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
Probab=100.00  E-value=1.5e-59  Score=543.18  Aligned_cols=431  Identities=32%  Similarity=0.523  Sum_probs=354.9

Q ss_pred             CCccchhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHH
Q 003873          340 QQSSLTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQ  419 (790)
Q Consensus       340 ~~~~~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAk  419 (790)
                      ...+++|++||+|++++||+|++..++.|..||..|..... .+.+..+.  .+....+++||+||||||||++|+++|+
T Consensus        23 ~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~-~~~~~~g~--~~~~~~~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           23 MASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKK-NSFKHAGK--DGSGVFRAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             ---CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHH-TTTCCCCT--TSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhch-hhccccCc--cCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999976431 12222221  1123568999999999999999999999


Q ss_pred             HhCCcEEEEeCCCCCCchhhhhhcccCCC-chhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHH
Q 003873          420 MLGFQAIEVNASDSRGKADAKISKGIGGS-NANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIAS  498 (790)
Q Consensus       420 elg~~iiEinaSd~rsk~~~~i~~~~g~s-~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~  498 (790)
                      ++++.++++|+++.++...  +...+... ....+..++.....   .......+.||||||+|.|...+++++..|+..
T Consensus       100 ~l~~~~i~in~s~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~  174 (516)
T 1sxj_A          100 ELGYDILEQNASDVRSKTL--LNAGVKNALDNMSVVGYFKHNEE---AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF  174 (516)
T ss_dssp             HTTCEEEEECTTSCCCHHH--HHHTGGGGTTBCCSTTTTTC-------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred             HcCCCEEEEeCCCcchHHH--HHHHHHHHhccccHHHHHhhhhh---hhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence            9999999999998776431  11111000 00001111111000   001134578999999999999888888888888


Q ss_pred             hhcCCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 003873          499 IKISKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQY  578 (790)
Q Consensus       499 i~~s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~  578 (790)
                      ++..+.|||||||+.....++++.+||..+.|.+|+.+++..+|..+|..+++.++++++..|++.+.||+|+++++|++
T Consensus       175 l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~  254 (516)
T 1sxj_A          175 CRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST  254 (516)
T ss_dssp             HHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred             HHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            88899999999998877788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHhccCCCCCChHHHHHHHhccCC------CcccHHHHHhhcCCCcchHHHHHHHHhhhhcCCC
Q 003873          579 MSLSLSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNG------GKLRMDERIDLSMSDPDLVPLLIQENYINYRPSS  652 (790)
Q Consensus       579 ~~~~~~~it~~~v~~~~~~~~kd~~ls~F~ai~ki~~~~~------~~~~~~e~id~~~~d~~~~~l~i~ENYl~~~~~~  652 (790)
                      ++.....|+.+++++.+..+.++..+++|+++++||+...      ...+++++++++|.|++++++||||||++++|..
T Consensus       255 ~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eNy~~~~p~~  334 (516)
T 1sxj_A          255 ISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSV  334 (516)
T ss_dssp             HHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGGGTSTTGGGTSCHHHHHHHHTTSTTTHHHHHHHHSSSSEESC
T ss_pred             HHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCCccccccccCCCHHHhhhhhccCHHHHHHHHHHHhhhccccc
Confidence            9998889999999998888889999999999999997321      1357889999999999999999999999998865


Q ss_pred             CCCchHHhHHHHHHHHHhcChhhHhhhHhhc-ccccchhcccchhhcccchhhhccCcchhcccccccccccchhhhhch
Q 003873          653 AGRDEVKRLSLIARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGERNFNRFGGWLGKNST  731 (790)
Q Consensus       653 ~~~~~~~~l~~~~~aad~lS~aD~v~~~i~~-~q~wsL~~~~~~~ssv~p~~~~~g~~~~~~~g~~~~~~Fp~wlgk~s~  731 (790)
                      ...+ ...|+.++.|+|+||++|++++.|++ .|+|+|+|+++++++|+|+.+++|..       .+++.||+|||+||+
T Consensus       335 ~~~~-~~~l~~~~~a~d~ls~~D~~~~~i~~~~q~~~l~~~~~~~~~v~p~~~~~g~~-------~~~~~fp~~~~~~s~  406 (516)
T 1sxj_A          335 LKPG-QSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHM-------AGRINFTAWLGQNSK  406 (516)
T ss_dssp             CCTT-CCHHHHHHHHHHHHHHHHHHHHHHTTCSSCGGGHHHHHHHHTHHHHHTTCEEC-------SSCCCCCSHHHHHHH
T ss_pred             cCCc-hhHHHHHHHHHHHHhHHHHHHHHHccCCCCcccchhhHhhhhhccHHHhCCCC-------CCCCcCCHHHhhhch
Confidence            4321 13689999999999999999999999 89999999999999999998888764       245789999999999


Q ss_pred             hhHHHHHHHHHHHhhccccccccCchhhhhccHHHHHHHhchhhhcCCcchHHHhhhc
Q 003873          732 MGKNLRLLEDLHFHHLASRKSKLGRDTLRLDYFSLLLKQLTEPLRVLPKDELLRKLLS  789 (790)
Q Consensus       732 ~~K~~r~l~el~~~~~~~~~~~~~~~~~~~~Ylp~L~~~l~~pL~~~~~~~~v~~vi~  789 (790)
                      ++|++|++++|+.||+..  +++++.+++++|||+|+.+|++||... +.++|++||+
T Consensus       407 ~~k~~r~~~~l~~~~~~~--~~~~~~~~~~~~lp~l~~~~~~~l~~~-~~~~~~~~i~  461 (516)
T 1sxj_A          407 SAKYYRLLQEIHYHTRLG--TSTXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXX  461 (516)
T ss_dssp             HHHHHHHHHHHHTTTTTC--CCHHHHHTTTHHHHHHHHSCCCCHHHH-HHTTTCCSHH
T ss_pred             hhHHHHHHHHHHHHhhhh--hcccccccccccccccccccccccccc-cccccccccc
Confidence            999999999999999764  578899999999999999999999864 3567888775
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} Back     alignment and structure
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Back     alignment and structure
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} Back     alignment and structure
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Back     alignment and structure
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Back     alignment and structure
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Back     alignment and structure
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Back     alignment and structure
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Back     alignment and structure
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Back     alignment and structure
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Back     alignment and structure
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Back     alignment and structure
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Back     alignment and structure
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Back     alignment and structure
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Back     alignment and structure
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Back     alignment and structure
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Back     alignment and structure
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Back     alignment and structure
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* Back     alignment and structure
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Back     alignment and structure
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Back     alignment and structure
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Back     alignment and structure
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A Back     alignment and structure
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Back     alignment and structure
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 790
d1sxja1146 a.80.1.1 (A:548-693) Replication factor C1 {Baker' 4e-45
d1sxja2253 c.37.1.20 (A:295-547) Replication factor C1 {Baker 8e-34
d1iqpa2231 c.37.1.20 (A:2-232) Replication factor C {Archaeon 6e-25
d1njfa_239 c.37.1.20 (A:) delta prime subunit of DNA polymera 5e-24
d1sxjb2224 c.37.1.20 (B:7-230) Replication factor C4 {Baker's 9e-24
d1sxjd2237 c.37.1.20 (D:26-262) Replication factor C2 {Baker' 7e-22
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 1e-20
d1sxje2252 c.37.1.20 (E:4-255) Replication factor C5 {Baker's 3e-20
d1sxjc2227 c.37.1.20 (C:12-238) Replication factor C3 {Baker' 1e-19
d1l7ba_92 c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 2e-19
d1in4a2238 c.37.1.20 (A:17-254) Holliday junction helicase Ru 2e-17
d1ixsb2239 c.37.1.20 (B:4-242) Holliday junction helicase Ruv 4e-17
d1cdza_96 c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom 4e-11
d1a5ta2207 c.37.1.20 (A:1-207) delta prime subunit of DNA pol 8e-09
d1fnna2276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 3e-08
d1t15a2102 c.15.1.3 (A:1758-1859) Breast cancer associated pr 8e-06
d2gnoa2198 c.37.1.20 (A:11-208) gamma subunit of DNA polymera 3e-05
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 4e-04
d1gvnb_273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 9e-04
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 0.002
>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146 Back     information, alignment and structure

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  156 bits (396), Expect = 4e-45
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 604 ISPFTAVDKLFGFN------GGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGRDE 657
           + PF    K+               ++++I L   D D  PL+IQENY++ RPS   +  
Sbjct: 2   LKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVL-KPG 60

Query: 658 VKRLSLIARAAESISDGDIFNVQIRR-NQQWQLSQSSSLASCIIPAALMHGQRETLEQGE 716
              L  +A AA  IS GDI   +IR   Q W L    ++ S + PA+ + G       G 
Sbjct: 61  QSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMA----GR 116

Query: 717 RNFNRFGGWLGKNSTMGKNLRLLEDLHFH 745
            NF     WLG+NS   K  RLL+++H+H
Sbjct: 117 INFTA---WLGQNSKSAKYYRLLQEIHYH 142
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224 Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227 Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Length = 92 Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query790
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 100.0
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 100.0
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.97
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.97
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.97
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.97
d1sxja1146 Replication factor C1 {Baker's yeast (Saccharomyce 99.96
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.95
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.94
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.94
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 99.82
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 99.81
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 99.79
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 99.78
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.72
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.69
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.68
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.62
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 99.62
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.55
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 99.54
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.52
d1svma_362 Papillomavirus large T antigen helicase domain {Si 99.44
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.36
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.35
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.34
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.3
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 99.23
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 99.12
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 99.02
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.99
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 98.96
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 98.88
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 98.79
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 98.4
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 98.38
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.38
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 98.31
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 98.23
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 97.96
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 97.88
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.85
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 97.83
d1tuea_205 Replication protein E1 helicase domain {Human papi 97.71
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 97.66
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.65
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 97.55
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 97.54
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 97.52
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 97.49
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 97.47
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 97.44
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.42
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 97.41
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 97.38
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 97.3
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 97.28
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 97.23
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 97.21
d1j8yf2211 GTPase domain of the signal sequence recognition p 97.18
d2qy9a2211 GTPase domain of the signal recognition particle r 97.17
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.16
d1okkd2207 GTPase domain of the signal recognition particle r 97.16
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 97.14
d1vmaa2213 GTPase domain of the signal recognition particle r 97.13
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 97.09
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 97.08
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 97.08
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 97.08
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 97.06
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 97.04
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 97.01
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 97.01
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 96.99
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 96.98
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 96.96
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 96.93
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 96.92
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.9
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 96.89
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.89
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 96.87
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 96.85
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.84
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 96.84
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.81
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.67
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 96.65
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 96.61
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 96.56
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 96.55
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 96.52
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 96.5
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 96.47
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 96.4
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 96.39
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 96.27
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 96.09
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 96.06
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 96.04
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 95.99
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 95.96
d2hyda1255 Putative multidrug export ATP-binding/permease pro 95.93
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 95.92
d1g2912240 Maltose transport protein MalK, N-terminal domain 95.88
d2awna2232 Maltose transport protein MalK, N-terminal domain 95.88
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 95.82
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 95.76
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 95.75
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 95.74
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 95.7
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 95.69
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 95.68
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 95.68
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 95.67
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 95.63
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 95.63
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 95.58
d1nrjb_209 Signal recognition particle receptor beta-subunit 95.54
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 95.53
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 95.5
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 95.46
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 95.45
d2fh5b1207 Signal recognition particle receptor beta-subunit 95.28
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 95.28
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 95.23
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 95.17
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 95.15
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 95.11
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 95.03
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 94.9
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 94.85
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 94.83
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 94.82
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 94.72
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 94.67
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 94.65
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 94.6
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 94.59
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 94.59
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 94.59
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 94.57
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 94.57
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 94.51
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 94.5
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 94.45
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 94.44
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 94.39
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 94.35
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 94.35
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 94.2
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 94.06
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 94.05
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 93.85
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 93.84
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 93.82
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 93.79
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 93.74
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 93.66
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 93.61
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 93.57
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 93.47
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 93.47
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 93.45
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 93.44
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 93.36
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 93.27
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 93.26
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 93.24
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 93.21
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 93.21
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 93.2
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 93.17
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 93.15
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 93.06
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 92.88
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 92.79
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 92.77
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 92.73
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 92.7
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 92.68
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 92.62
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 92.59
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 92.59
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 92.58
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 92.57
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 92.55
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 92.5
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 92.41
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 91.95
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 91.87
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 91.78
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 91.78
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 91.77
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 91.76
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 91.72
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 91.57
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 91.53
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 91.4
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 91.38
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 91.34
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 91.2
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 90.83
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 90.59
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 90.48
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 90.21
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 90.2
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 90.07
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 89.94
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 89.94
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 89.94
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 89.94
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 89.93
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 89.93
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 89.82
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 89.82
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 89.37
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 89.34
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 89.19
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 88.92
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 88.66
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 88.31
d1tq4a_400 Interferon-inducible GTPase {Mouse (Mus musculus) 88.28
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 88.16
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 88.06
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 88.02
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 87.59
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 87.5
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 87.4
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 87.03
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 86.78
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 86.73
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 86.56
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 85.99
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 85.95
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 85.9
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 85.42
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 85.25
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 85.18
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 85.06
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 84.95
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 84.89
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 84.44
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 84.19
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 84.07
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 83.77
d1n0ua2341 Elongation factor 2 (eEF-2), N-terminal (G) domain 83.53
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 83.12
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 81.9
d2c78a3204 Elongation factor Tu (EF-Tu), N-terminal (G) domai 81.24
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 81.06
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 80.86
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 80.71
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 80.18
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-35  Score=303.30  Aligned_cols=249  Identities=34%  Similarity=0.574  Sum_probs=198.0

Q ss_pred             chhhhhcCCCCCccccCCHHHHHHHHHHHHhhhhhhhccccccCCCCcCccCCCcEEEEECCCCCChHHHHHHHHHHhCC
Q 003873          344 LTWTEKYRPKTPNEIVGNQQLVKQLHTWLAHWNEKFLDTGTKRNGKKQNDASAEKAAILSGSPGMGKTTAAKLVCQMLGF  423 (790)
Q Consensus       344 ~lW~eKY~P~sl~dLvG~e~~i~~L~~wL~~w~~~~~~~~~k~~~~~~~~~~~~~~lLLsGPpGtGKTTlA~~lAkelg~  423 (790)
                      .||+|||+|++|+||+|+++.+++|+.||..|........   ...........+++||+|||||||||+|+++|+++++
T Consensus         2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~---~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2           2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSF---KHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTT---CCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhh---hhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6999999999999999999999999999999976432211   0111223346789999999999999999999999999


Q ss_pred             cEEEEeCCCCCCchhh--hhhcccCCCchhHHHHHHHHhhhhccccCCCCCceEEEEecCCCCCccchhHHHHHHHHhhc
Q 003873          424 QAIEVNASDSRGKADA--KISKGIGGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKI  501 (790)
Q Consensus       424 ~iiEinaSd~rsk~~~--~i~~~~g~s~~~~i~e~l~~a~~~~~~~~~~~~~~VLIIDEiD~L~~~~~~~l~~Ll~~i~~  501 (790)
                      +++++++++.++....  .+.........  +..+...    ...........+|++||+|.+....++.+..+++....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~  152 (253)
T d1sxja2          79 DILEQNASDVRSKTLLNAGVKNALDNMSV--VGYFKHN----EEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK  152 (253)
T ss_dssp             EEEEECTTSCCCHHHHHHTGGGGTTBCCS--TTTTTC--------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred             hhhccccccchhhHHHHHHHHHHhhcchh--hhhhhhh----hhcccccccceEEEeeeccccccchhhhhHHHhhhhcc
Confidence            9999999988765321  11111100000  0000000    00011234578999999999999999999999998888


Q ss_pred             CCCcEEEEecccchhhhhhccccccccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003873          502 SKIPIICICNDRYSQKLKSLVNYCSDLRFRKPRKQEIAKRLMQIANAEGLEVNEIALEELADRVNGDIRMAINQLQYMSL  581 (790)
Q Consensus       502 s~~pII~I~nd~~~~~l~~L~sR~~~I~F~~pt~~ei~~iL~~I~~~Egi~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~  581 (790)
                      ...++|+|||+.....++++++||..++|.+|+.+++..+|..+|.+|++.+++++++.|+..++||+|.+|+.||+++.
T Consensus       153 ~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~GDiR~ai~~L~~~~~  232 (253)
T d1sxja2         153 TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTIST  232 (253)
T ss_dssp             CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHH
T ss_pred             cccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            89999999999888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhccCC
Q 003873          582 SLSVIKYDDIRQRLLSSAKD  601 (790)
Q Consensus       582 ~~~~it~~~v~~~~~~~~kd  601 (790)
                      ....++.+.+.+......+|
T Consensus       233 ~~~~i~~~~~~~~~~~~~k~  252 (253)
T d1sxja2         233 TTKTINHENINEISKAWEKN  252 (253)
T ss_dssp             HSSCCCTTHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHhchhccC
Confidence            98888888877766555443
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure